Multiple sequence alignment - TraesCS7A01G252900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G252900 chr7A 100.000 9259 0 0 1 9259 237957714 237948456 0.000000e+00 17099.0
1 TraesCS7A01G252900 chr7A 92.005 863 56 9 1 856 238008652 238007796 0.000000e+00 1199.0
2 TraesCS7A01G252900 chr7A 91.339 866 62 9 1 856 238010528 238009666 0.000000e+00 1171.0
3 TraesCS7A01G252900 chr7A 90.972 864 67 9 1 856 238006790 238005930 0.000000e+00 1153.0
4 TraesCS7A01G252900 chr7A 90.603 862 71 8 1 856 238004916 238004059 0.000000e+00 1134.0
5 TraesCS7A01G252900 chr7A 91.885 801 55 7 1 793 238000768 237999970 0.000000e+00 1110.0
6 TraesCS7A01G252900 chr7A 91.913 779 54 7 1 773 238002756 238001981 0.000000e+00 1081.0
7 TraesCS7A01G252900 chr7A 90.344 611 44 7 1 598 237998694 237998086 0.000000e+00 787.0
8 TraesCS7A01G252900 chr7A 89.552 268 23 3 593 856 237987826 237987560 1.490000e-87 335.0
9 TraesCS7A01G252900 chr7A 100.000 41 0 0 5241 5281 4762827 4762867 9.970000e-10 76.8
10 TraesCS7A01G252900 chr7A 90.909 55 3 2 5230 5282 7699697 7699751 1.290000e-08 73.1
11 TraesCS7A01G252900 chr7D 94.911 5306 181 37 2853 8129 224477173 224471928 0.000000e+00 8220.0
12 TraesCS7A01G252900 chr7D 92.839 2695 137 35 44 2714 224480267 224477605 0.000000e+00 3856.0
13 TraesCS7A01G252900 chr7D 95.728 515 8 5 8169 8681 224471917 224471415 0.000000e+00 817.0
14 TraesCS7A01G252900 chr7D 87.386 547 30 19 8714 9259 224471430 224470922 8.010000e-165 592.0
15 TraesCS7A01G252900 chr7D 95.868 121 5 0 2801 2921 224477295 224477175 7.330000e-46 196.0
16 TraesCS7A01G252900 chr7D 100.000 41 0 0 5241 5281 588679963 588680003 9.970000e-10 76.8
17 TraesCS7A01G252900 chr7B 93.818 3413 117 35 5290 8687 172576563 172579896 0.000000e+00 5048.0
18 TraesCS7A01G252900 chr7B 95.584 2219 69 11 3025 5236 172574159 172576355 0.000000e+00 3528.0
19 TraesCS7A01G252900 chr7B 93.743 1758 74 15 658 2407 172571123 172572852 0.000000e+00 2604.0
20 TraesCS7A01G252900 chr7B 96.624 474 15 1 2439 2912 172573109 172573581 0.000000e+00 785.0
21 TraesCS7A01G252900 chr7B 88.628 554 35 12 8708 9259 172579875 172580402 0.000000e+00 649.0
22 TraesCS7A01G252900 chr7B 80.040 506 64 15 3161 3656 172573109 172573587 3.200000e-89 340.0
23 TraesCS7A01G252900 chr7B 94.475 181 10 0 2853 3033 172573592 172573772 7.080000e-71 279.0
24 TraesCS7A01G252900 chr7B 94.231 104 3 1 5133 5236 172576369 172576469 1.240000e-33 156.0
25 TraesCS7A01G252900 chr3A 80.499 441 64 19 6 433 721911554 721911985 1.500000e-82 318.0
26 TraesCS7A01G252900 chr2D 94.340 53 2 1 5239 5291 36748720 36748669 7.710000e-11 80.5
27 TraesCS7A01G252900 chr3B 100.000 41 0 0 5241 5281 671380736 671380776 9.970000e-10 76.8
28 TraesCS7A01G252900 chr3B 95.556 45 1 1 5241 5285 726296896 726296853 4.640000e-08 71.3
29 TraesCS7A01G252900 chr2A 97.674 43 1 0 5240 5282 295069670 295069628 3.590000e-09 75.0
30 TraesCS7A01G252900 chr5B 92.308 52 1 3 5240 5289 8543962 8543912 4.640000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G252900 chr7A 237948456 237957714 9258 True 17099.000000 17099 100.000000 1 9259 1 chr7A.!!$R1 9258
1 TraesCS7A01G252900 chr7A 237998086 238010528 12442 True 1090.714286 1199 91.294429 1 856 7 chr7A.!!$R3 855
2 TraesCS7A01G252900 chr7D 224470922 224480267 9345 True 2736.200000 8220 93.346400 44 9259 5 chr7D.!!$R1 9215
3 TraesCS7A01G252900 chr7B 172571123 172580402 9279 False 1673.625000 5048 92.142875 658 9259 8 chr7B.!!$F1 8601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 2492 0.460635 GCGTGTGTAGGGCCGAATAA 60.461 55.000 0.00 0.00 0.00 1.40 F
1618 3519 0.249238 GCGACATCTCCGAGCAGAAT 60.249 55.000 0.00 0.00 0.00 2.40 F
1693 3594 0.419459 ATGGAGGAGAGGAGGTTGGT 59.581 55.000 0.00 0.00 0.00 3.67 F
2418 4320 0.603707 CCAGAAGTGTGCACCATCGT 60.604 55.000 15.69 3.14 0.00 3.73 F
2754 4881 0.608130 TGGGACTTGAGGATGACACG 59.392 55.000 0.00 0.00 0.00 4.49 F
2936 5356 0.613260 AGGTCGCCTAAATCAGCACA 59.387 50.000 0.00 0.00 28.47 4.57 F
4688 7531 1.443802 CTTCCTTTTCTCAGCCGTCC 58.556 55.000 0.00 0.00 0.00 4.79 F
5086 7930 0.106167 TGATAGCTACCCTGACGGCT 60.106 55.000 0.00 0.00 38.62 5.52 F
6525 9533 1.165270 CGGTTGGTGAATCTGGGTTC 58.835 55.000 0.00 0.00 0.00 3.62 F
7131 15735 1.546476 CCTGACTGTCACAGTACCCTC 59.454 57.143 11.42 0.00 45.44 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 3594 0.033991 CCTCGTCCTCCTCTTCCTCA 60.034 60.000 0.00 0.00 0.00 3.86 R
2913 5333 1.666189 GCTGATTTAGGCGACCTTGTC 59.334 52.381 3.71 2.08 34.61 3.18 R
2936 5356 3.067742 GCAGATAGCAGATGCCAATTTGT 59.932 43.478 0.14 0.00 44.79 2.83 R
3882 6725 1.496060 CACAGCTATAGGTGGTGGGA 58.504 55.000 30.01 0.00 46.90 4.37 R
4664 7507 1.271597 GGCTGAGAAAAGGAAGGCTCA 60.272 52.381 0.00 0.00 36.13 4.26 R
4721 7564 3.016736 TGGCATTTAAGTGGAAGCTAGC 58.983 45.455 6.62 6.62 0.00 3.42 R
5713 8715 1.529010 CCAAGGCAAGCACTGACCA 60.529 57.895 0.00 0.00 30.58 4.02 R
6592 12989 3.117663 TGGCTCTTAGGGTTCAAGTGTTT 60.118 43.478 0.00 0.00 0.00 2.83 R
7644 17900 0.107848 ACAGCAACTACCATACCCGC 60.108 55.000 0.00 0.00 0.00 6.13 R
9084 19423 0.324091 CCTGCATTGCTTCCTTCCCT 60.324 55.000 10.49 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 171 9.748708 TTGAAGAAAAGTTCATCGAATTTGAAT 57.251 25.926 0.00 0.00 36.34 2.57
165 172 9.748708 TGAAGAAAAGTTCATCGAATTTGAATT 57.251 25.926 0.00 0.00 35.68 2.17
217 225 9.610705 TCATCAATTTTGAAAAAGGTTCATTCA 57.389 25.926 0.00 0.00 41.13 2.57
234 242 9.487790 GGTTCATTCAATTTGAAAAAGGTATCA 57.512 29.630 15.34 0.00 40.12 2.15
242 250 9.947669 CAATTTGAAAAAGGTATCAATTTTGCA 57.052 25.926 0.00 0.00 35.63 4.08
459 2346 2.488355 GTCGCGAGTTCGATCCCA 59.512 61.111 10.24 0.00 43.02 4.37
484 2371 3.317150 CCGGCAACTTTTTCTGGAATTC 58.683 45.455 0.00 0.00 0.00 2.17
492 2379 7.116805 GCAACTTTTTCTGGAATTCATCGAAAT 59.883 33.333 7.93 0.00 0.00 2.17
521 2408 5.858581 GCAGTACAGGATTGCTAACAAAAAG 59.141 40.000 0.00 0.00 39.77 2.27
574 2463 0.526524 CGCCGGTTTGCAAGAAACAA 60.527 50.000 1.90 0.00 32.04 2.83
591 2480 2.294074 ACAATTGTAACCAGCGTGTGT 58.706 42.857 9.97 0.00 0.00 3.72
603 2492 0.460635 GCGTGTGTAGGGCCGAATAA 60.461 55.000 0.00 0.00 0.00 1.40
631 2520 2.231235 CCCCGTGAAATCCCTCAAAAAG 59.769 50.000 0.00 0.00 0.00 2.27
657 2546 0.818296 AAGATCCCGTGACTCCTTCG 59.182 55.000 0.00 0.00 0.00 3.79
765 2660 3.733960 CGGACGAGACGACAGGCA 61.734 66.667 0.00 0.00 0.00 4.75
780 2675 0.833287 AGGCATCGTACCATTCAGCT 59.167 50.000 0.00 0.00 0.00 4.24
956 2855 0.673985 GTCAGTTCAAGCCCCAAACC 59.326 55.000 0.00 0.00 0.00 3.27
1005 2905 2.407210 CTCACGAGGCGAGAGAGC 59.593 66.667 8.26 0.00 44.72 4.09
1160 3060 1.671379 AGCCGTTTTTCTCTCCGCC 60.671 57.895 0.00 0.00 0.00 6.13
1188 3088 1.130749 CCGTCGATCTCGTTTCTCAGT 59.869 52.381 0.00 0.00 40.80 3.41
1347 3247 2.678471 TCGTTTTATTCTCCGGTCCC 57.322 50.000 0.00 0.00 0.00 4.46
1360 3260 1.003718 GGTCCCTGTCGGTCCTTTG 60.004 63.158 0.00 0.00 36.91 2.77
1441 3341 2.826003 AACCGGGGAAAGGCGAAGT 61.826 57.895 6.32 0.00 0.00 3.01
1608 3509 1.066587 CTTCGGAGGGCGACATCTC 59.933 63.158 1.57 0.00 41.91 2.75
1613 3514 3.492311 GAGGGCGACATCTCCGAGC 62.492 68.421 0.00 0.00 38.35 5.03
1618 3519 0.249238 GCGACATCTCCGAGCAGAAT 60.249 55.000 0.00 0.00 0.00 2.40
1693 3594 0.419459 ATGGAGGAGAGGAGGTTGGT 59.581 55.000 0.00 0.00 0.00 3.67
1745 3646 3.423154 CCAACGAGGTGAAGCGGC 61.423 66.667 0.00 0.00 0.00 6.53
1831 3732 1.382695 GGAGGATGAGGACGGGGAA 60.383 63.158 0.00 0.00 0.00 3.97
2097 3999 3.683365 TTGTTGCTGCTATCTGACTGA 57.317 42.857 0.00 0.00 0.00 3.41
2135 4037 6.087291 CGAAGCAACATTTCAGTCTTCATTTC 59.913 38.462 0.00 0.00 32.53 2.17
2146 4048 6.338146 TCAGTCTTCATTTCCTACATAACGG 58.662 40.000 0.00 0.00 0.00 4.44
2187 4089 2.229792 AGTGCACACCATCGATTTTGT 58.770 42.857 21.04 0.00 0.00 2.83
2240 4142 4.593597 ACACGGTGAAAAATATAGCACG 57.406 40.909 16.29 0.00 32.24 5.34
2259 4161 4.378046 GCACGTTGTAGTCTTTTGTATGGG 60.378 45.833 0.00 0.00 0.00 4.00
2361 4263 6.803807 GTCTCAAAGCAACATTTCAGTTATCC 59.196 38.462 0.00 0.00 0.00 2.59
2373 4275 9.533831 ACATTTCAGTTATCCCTCTATTTTTGT 57.466 29.630 0.00 0.00 0.00 2.83
2377 4279 6.816640 TCAGTTATCCCTCTATTTTTGTCACG 59.183 38.462 0.00 0.00 0.00 4.35
2408 4310 5.450818 TTATTTAGCCCATCCAGAAGTGT 57.549 39.130 0.00 0.00 0.00 3.55
2418 4320 0.603707 CCAGAAGTGTGCACCATCGT 60.604 55.000 15.69 3.14 0.00 3.73
2565 4692 8.034804 TCATCTTCGACAGATCTATTGTTTGAA 58.965 33.333 0.00 0.00 40.67 2.69
2626 4753 4.708601 CCTCCATAAAACTTTTGTCGTCG 58.291 43.478 0.00 0.00 0.00 5.12
2648 4775 5.126384 TCGTTCTCCACTCCAAAAATTTGTT 59.874 36.000 5.27 0.00 36.45 2.83
2651 4778 4.161189 TCTCCACTCCAAAAATTTGTTGCA 59.839 37.500 5.27 0.00 36.45 4.08
2687 4814 2.867368 TCTTTCAAACGTCGCTAAAGCA 59.133 40.909 2.44 0.00 42.21 3.91
2754 4881 0.608130 TGGGACTTGAGGATGACACG 59.392 55.000 0.00 0.00 0.00 4.49
2912 5332 3.242867 TCTCAGGGTCACTCAACATCTT 58.757 45.455 0.00 0.00 0.00 2.40
2913 5333 3.007290 TCTCAGGGTCACTCAACATCTTG 59.993 47.826 0.00 0.00 0.00 3.02
2935 5355 1.398390 CAAGGTCGCCTAAATCAGCAC 59.602 52.381 0.00 0.00 31.13 4.40
2936 5356 0.613260 AGGTCGCCTAAATCAGCACA 59.387 50.000 0.00 0.00 28.47 4.57
2986 5406 9.755804 CTCTATGTGAAATAGCAGACAGAATTA 57.244 33.333 0.00 0.00 0.00 1.40
3052 5867 2.590007 GCTATCTGGCTGGCCACG 60.590 66.667 10.55 7.37 41.89 4.94
3080 5895 7.680730 AGTCTTGAAGTACCATGTCAGTTATT 58.319 34.615 0.00 0.00 0.00 1.40
3123 5938 6.018433 ACTTCATTAATTAGCCCATCCAGT 57.982 37.500 0.00 0.00 0.00 4.00
3125 5940 6.998673 ACTTCATTAATTAGCCCATCCAGTAC 59.001 38.462 0.00 0.00 0.00 2.73
3128 5943 5.968676 TTAATTAGCCCATCCAGTACTGT 57.031 39.130 21.18 0.80 0.00 3.55
3136 5951 2.618816 CCATCCAGTACTGTGCACCATT 60.619 50.000 21.18 0.31 0.00 3.16
3137 5952 2.472695 TCCAGTACTGTGCACCATTC 57.527 50.000 21.18 2.74 0.00 2.67
3138 5953 1.977854 TCCAGTACTGTGCACCATTCT 59.022 47.619 21.18 5.17 0.00 2.40
3481 6296 6.208599 GTGATTGTTATTTGGGACTTGAGGAA 59.791 38.462 0.00 0.00 0.00 3.36
3482 6297 6.780031 TGATTGTTATTTGGGACTTGAGGAAA 59.220 34.615 0.00 0.00 0.00 3.13
3483 6298 6.399639 TTGTTATTTGGGACTTGAGGAAAC 57.600 37.500 0.00 0.00 0.00 2.78
3485 6300 6.133356 TGTTATTTGGGACTTGAGGAAACTT 58.867 36.000 0.00 0.00 44.43 2.66
3487 6302 3.943671 TTGGGACTTGAGGAAACTTGA 57.056 42.857 0.00 0.00 44.43 3.02
3489 6304 2.106511 TGGGACTTGAGGAAACTTGAGG 59.893 50.000 0.00 0.00 44.43 3.86
3535 6378 5.663795 AATATGCTTCTCTTATGCACGTG 57.336 39.130 12.28 12.28 40.69 4.49
3840 6683 3.744660 CTGGGAGGCTATTCATTGTACC 58.255 50.000 0.00 0.00 0.00 3.34
3882 6725 2.437359 GCAGCACAGCCGGAGAAT 60.437 61.111 5.05 0.00 0.00 2.40
3924 6767 3.022607 GCTCAAGCATTTCAGCAGTTT 57.977 42.857 0.00 0.00 41.59 2.66
3982 6825 3.414549 TTGAGCAAGGTTCACGTTTTC 57.585 42.857 0.00 0.00 0.00 2.29
4046 6889 3.568430 CAGGTTCCCACTTTTCAAGGTAC 59.432 47.826 0.00 0.00 0.00 3.34
4254 7097 7.453393 TGGTCAAGAATCAGTGTCTTATTCTT 58.547 34.615 10.31 10.31 45.99 2.52
4270 7113 9.995003 GTCTTATTCTTAGTTCTGATGGATCAT 57.005 33.333 0.00 0.00 36.02 2.45
4289 7132 5.749596 TCATACAGTGACAACCAACAAAG 57.250 39.130 0.00 0.00 0.00 2.77
4314 7157 4.021544 ACACTTAGCCTTCTGAGTTCTGAG 60.022 45.833 0.00 0.00 37.08 3.35
4335 7178 3.774766 AGATATGTAGTGGGCAGTGACAA 59.225 43.478 0.00 0.00 0.00 3.18
4371 7214 7.801783 GTCGTAAATACACATCATGATCGACTA 59.198 37.037 22.94 7.20 39.31 2.59
4522 7365 2.223525 CGAAACTAGACGACTGGGATCC 60.224 54.545 1.92 1.92 0.00 3.36
4618 7461 4.102054 TCGGGATTTGGACTTATAGGGTTC 59.898 45.833 0.00 0.00 0.00 3.62
4619 7462 4.141574 CGGGATTTGGACTTATAGGGTTCA 60.142 45.833 0.00 0.00 0.00 3.18
4688 7531 1.443802 CTTCCTTTTCTCAGCCGTCC 58.556 55.000 0.00 0.00 0.00 4.79
4702 7545 1.694696 GCCGTCCCTCCAAGATCTAAT 59.305 52.381 0.00 0.00 0.00 1.73
4721 7564 2.768492 GCTGCAGGGGCGATCAAAG 61.768 63.158 17.12 0.00 45.35 2.77
5028 7872 1.202114 CTGTGAGCTCTGGACTGAGAC 59.798 57.143 16.19 1.53 36.23 3.36
5034 7878 1.404047 GCTCTGGACTGAGACAAGAGC 60.404 57.143 21.88 21.88 40.05 4.09
5041 7885 0.884514 CTGAGACAAGAGCGAGGTCA 59.115 55.000 5.06 0.00 34.04 4.02
5082 7926 3.707102 AGGAGTTTGATAGCTACCCTGAC 59.293 47.826 0.00 0.00 0.00 3.51
5086 7930 0.106167 TGATAGCTACCCTGACGGCT 60.106 55.000 0.00 0.00 38.62 5.52
5112 7956 6.716628 TGGGAATGAATAGCATTGAAGATACC 59.283 38.462 0.00 0.00 46.90 2.73
5330 8330 3.281332 GGCTGGTATTGCCCTTTCA 57.719 52.632 0.00 0.00 44.32 2.69
5670 8672 1.573829 CGCTTTGGACGCTTAGGCAA 61.574 55.000 0.00 0.00 38.60 4.52
5675 8677 1.302192 GGACGCTTAGGCAACACCA 60.302 57.895 0.00 0.00 43.14 4.17
5713 8715 1.452108 GGCGCTTAGGCATCAAGGT 60.452 57.895 7.64 0.00 45.92 3.50
5717 8719 1.383523 GCTTAGGCATCAAGGTGGTC 58.616 55.000 0.00 0.00 38.54 4.02
5753 8755 4.079958 GGGACACCTTACCACCATAAGAAT 60.080 45.833 0.00 0.00 34.59 2.40
5813 8815 1.276989 AGCCCAAATGGATGCAGTTTG 59.723 47.619 0.00 6.22 37.39 2.93
5838 8840 5.106442 GGTTTCGTTCAGTCAAAATTTGGT 58.894 37.500 5.83 0.00 0.00 3.67
5951 8953 9.760077 TCTTGAGAAGTAACTCTAAAATTTCGT 57.240 29.630 0.00 0.00 37.73 3.85
6077 9079 1.732259 GCTTGTACGAGACAATGTGGG 59.268 52.381 14.70 0.00 46.95 4.61
6081 9083 2.094390 TGTACGAGACAATGTGGGTAGC 60.094 50.000 0.00 0.00 34.15 3.58
6198 9201 7.485913 CCATAAGTACAAGCTAATTTGCAACAG 59.514 37.037 14.27 0.00 34.99 3.16
6389 9395 1.239347 GAGTGTGGTTCTCTTTGGCC 58.761 55.000 0.00 0.00 0.00 5.36
6525 9533 1.165270 CGGTTGGTGAATCTGGGTTC 58.835 55.000 0.00 0.00 0.00 3.62
6641 13038 9.071276 CATGTTGCCTACTTTTAAGATCCATAT 57.929 33.333 0.00 0.00 0.00 1.78
6917 15517 6.095860 ACTGATGTAATGTGCTTATGTGCAAT 59.904 34.615 0.00 0.00 45.12 3.56
6932 15532 3.241701 GTGCAATGTGTGTAAAATCCCG 58.758 45.455 0.00 0.00 0.00 5.14
7030 15630 6.106877 TCTATTTTTGCTGCATCGTAGTTC 57.893 37.500 1.84 0.00 0.00 3.01
7131 15735 1.546476 CCTGACTGTCACAGTACCCTC 59.454 57.143 11.42 0.00 45.44 4.30
7166 15770 7.857885 GCTTGTATAACATACTTTTGGCATCTC 59.142 37.037 0.00 0.00 0.00 2.75
7168 15772 8.662781 TGTATAACATACTTTTGGCATCTCTC 57.337 34.615 0.00 0.00 0.00 3.20
7173 15777 6.109359 ACATACTTTTGGCATCTCTCTGTAC 58.891 40.000 0.00 0.00 0.00 2.90
7265 15873 4.578105 GGGAAAGATAATGCTGAAGACCAG 59.422 45.833 0.00 0.00 45.67 4.00
7452 16104 9.558133 AGGTTAGACTTAATAACTCTTAGGGTT 57.442 33.333 2.10 2.10 34.29 4.11
7514 17725 5.825593 TCCTTGTCTCTACCTTTCATTGT 57.174 39.130 0.00 0.00 0.00 2.71
7641 17897 8.937634 ATGAAATGAACTTTTGAAGCATATCC 57.062 30.769 0.00 0.00 0.00 2.59
7644 17900 8.767478 AAATGAACTTTTGAAGCATATCCTTG 57.233 30.769 0.00 0.00 0.00 3.61
7645 17901 5.713025 TGAACTTTTGAAGCATATCCTTGC 58.287 37.500 0.00 0.00 43.09 4.01
7661 17917 0.616371 TTGCGGGTATGGTAGTTGCT 59.384 50.000 0.00 0.00 0.00 3.91
7662 17918 0.107897 TGCGGGTATGGTAGTTGCTG 60.108 55.000 0.00 0.00 0.00 4.41
7699 17955 2.324860 TGAAGCGTTCACGTGATACTG 58.675 47.619 20.80 15.50 42.22 2.74
7703 17959 3.128349 AGCGTTCACGTGATACTGTTTT 58.872 40.909 20.80 0.00 42.22 2.43
7704 17960 3.558418 AGCGTTCACGTGATACTGTTTTT 59.442 39.130 20.80 0.00 42.22 1.94
7824 18150 1.442769 CGACCACAATGGAGGAAGTG 58.557 55.000 0.84 0.00 40.96 3.16
7845 18171 2.949106 CTGCTGTTTGCCCTGACG 59.051 61.111 0.00 0.00 42.00 4.35
7869 18195 0.105964 TCAAAGTGGTGTCGAGGGTG 59.894 55.000 0.00 0.00 0.00 4.61
7881 18207 1.452833 GAGGGTGCTGAGAATGGCC 60.453 63.158 0.00 0.00 0.00 5.36
7884 18210 1.318158 GGGTGCTGAGAATGGCCAAG 61.318 60.000 10.96 2.46 0.00 3.61
7996 18322 0.962356 CTTCCCCTGCTGACGCATTT 60.962 55.000 0.00 0.00 46.74 2.32
7997 18323 0.960364 TTCCCCTGCTGACGCATTTC 60.960 55.000 0.00 0.00 46.74 2.17
8005 18331 0.597568 CTGACGCATTTCCTTTGGCA 59.402 50.000 0.00 0.00 0.00 4.92
8006 18332 0.597568 TGACGCATTTCCTTTGGCAG 59.402 50.000 0.00 0.00 0.00 4.85
8007 18333 0.881118 GACGCATTTCCTTTGGCAGA 59.119 50.000 0.00 0.00 0.00 4.26
8008 18334 0.598065 ACGCATTTCCTTTGGCAGAC 59.402 50.000 0.00 0.00 0.00 3.51
8009 18335 0.597568 CGCATTTCCTTTGGCAGACA 59.402 50.000 0.00 0.00 0.00 3.41
8010 18336 1.203052 CGCATTTCCTTTGGCAGACAT 59.797 47.619 0.00 0.00 0.00 3.06
8011 18337 2.423185 CGCATTTCCTTTGGCAGACATA 59.577 45.455 0.00 0.00 0.00 2.29
8012 18338 3.067180 CGCATTTCCTTTGGCAGACATAT 59.933 43.478 0.00 0.00 0.00 1.78
8013 18339 4.365723 GCATTTCCTTTGGCAGACATATG 58.634 43.478 0.00 0.00 0.00 1.78
8014 18340 4.365723 CATTTCCTTTGGCAGACATATGC 58.634 43.478 1.58 0.00 45.74 3.14
8015 18341 3.370840 TTCCTTTGGCAGACATATGCT 57.629 42.857 1.58 0.00 45.75 3.79
8016 18342 4.502105 TTCCTTTGGCAGACATATGCTA 57.498 40.909 1.58 0.00 45.75 3.49
8017 18343 4.077300 TCCTTTGGCAGACATATGCTAG 57.923 45.455 1.58 0.00 45.75 3.42
8018 18344 3.455910 TCCTTTGGCAGACATATGCTAGT 59.544 43.478 1.58 0.00 45.75 2.57
8019 18345 4.080356 TCCTTTGGCAGACATATGCTAGTT 60.080 41.667 1.58 0.00 45.75 2.24
8042 18375 1.152922 TTCGTTCGTTTGGCCCCTT 60.153 52.632 0.00 0.00 0.00 3.95
8043 18376 1.167781 TTCGTTCGTTTGGCCCCTTC 61.168 55.000 0.00 0.00 0.00 3.46
8061 18394 2.403987 GCAGAGCAAGCGAGCATG 59.596 61.111 6.21 0.00 36.85 4.06
8062 18395 2.396955 GCAGAGCAAGCGAGCATGT 61.397 57.895 6.21 0.00 36.85 3.21
8076 18409 1.751927 CATGTCTGCTTCCTGGGCC 60.752 63.158 0.00 0.00 0.00 5.80
8134 18467 5.402997 AAAGTCAAGTGTAGTACCCTAGC 57.597 43.478 0.00 0.00 0.00 3.42
8135 18468 4.043608 AGTCAAGTGTAGTACCCTAGCA 57.956 45.455 0.00 0.00 0.00 3.49
8143 18476 5.781818 AGTGTAGTACCCTAGCACCTAAAAA 59.218 40.000 0.00 0.00 31.29 1.94
8159 18492 6.209391 CACCTAAAAAGAGATTGGTGTTCCAT 59.791 38.462 0.00 0.00 43.91 3.41
8164 18497 4.387026 AGAGATTGGTGTTCCATTCCAA 57.613 40.909 0.00 0.00 43.91 3.53
8289 18622 0.592247 CACCGTTGCAAGCTGTGAAC 60.592 55.000 14.60 0.00 0.00 3.18
8447 18782 0.925267 CTAAAATGTGCCGCGCATCG 60.925 55.000 19.37 5.65 41.91 3.84
8567 18902 2.837883 GCTGTGTGTGTGTGCCTGG 61.838 63.158 0.00 0.00 0.00 4.45
8568 18903 2.828095 TGTGTGTGTGTGCCTGGC 60.828 61.111 12.87 12.87 0.00 4.85
8569 18904 2.516930 GTGTGTGTGTGCCTGGCT 60.517 61.111 21.03 0.00 0.00 4.75
8570 18905 2.516695 TGTGTGTGTGCCTGGCTG 60.517 61.111 21.03 0.00 0.00 4.85
8571 18906 3.969802 GTGTGTGTGCCTGGCTGC 61.970 66.667 21.03 13.09 0.00 5.25
8572 18907 4.502939 TGTGTGTGCCTGGCTGCA 62.503 61.111 21.03 15.58 39.37 4.41
8652 18987 2.031245 TGCCATAAAACTTCACTGTGCG 60.031 45.455 2.12 0.00 0.00 5.34
8653 18988 2.031157 GCCATAAAACTTCACTGTGCGT 60.031 45.455 2.12 0.00 0.00 5.24
8654 18989 3.554524 CCATAAAACTTCACTGTGCGTG 58.445 45.455 2.12 0.00 45.18 5.34
8655 18990 2.748461 TAAAACTTCACTGTGCGTGC 57.252 45.000 2.12 0.00 43.46 5.34
8656 18991 0.808125 AAAACTTCACTGTGCGTGCA 59.192 45.000 2.12 0.00 43.46 4.57
8657 18992 0.378257 AAACTTCACTGTGCGTGCAG 59.622 50.000 2.12 6.79 43.46 4.41
8659 18994 0.250038 ACTTCACTGTGCGTGCAGAT 60.250 50.000 13.72 0.00 43.46 2.90
8660 18995 0.870393 CTTCACTGTGCGTGCAGATT 59.130 50.000 13.72 0.00 43.46 2.40
8661 18996 0.867746 TTCACTGTGCGTGCAGATTC 59.132 50.000 13.72 0.00 43.46 2.52
8662 18997 0.249826 TCACTGTGCGTGCAGATTCA 60.250 50.000 13.72 0.00 43.46 2.57
8663 18998 0.110509 CACTGTGCGTGCAGATTCAC 60.111 55.000 13.72 0.00 39.62 3.18
8664 18999 0.532640 ACTGTGCGTGCAGATTCACA 60.533 50.000 13.72 9.09 39.62 3.58
8665 19000 0.800631 CTGTGCGTGCAGATTCACAT 59.199 50.000 9.67 0.00 38.56 3.21
8666 19001 0.798159 TGTGCGTGCAGATTCACATC 59.202 50.000 0.00 0.00 36.80 3.06
8667 19002 1.081892 GTGCGTGCAGATTCACATCT 58.918 50.000 0.00 0.00 40.79 2.90
8668 19003 1.061711 GTGCGTGCAGATTCACATCTC 59.938 52.381 0.00 0.00 37.71 2.75
8669 19004 1.066645 TGCGTGCAGATTCACATCTCT 60.067 47.619 0.00 0.00 37.71 3.10
8670 19005 1.592081 GCGTGCAGATTCACATCTCTC 59.408 52.381 0.00 0.00 37.71 3.20
8671 19006 2.738000 GCGTGCAGATTCACATCTCTCT 60.738 50.000 0.00 0.00 37.71 3.10
8672 19007 3.114809 CGTGCAGATTCACATCTCTCTC 58.885 50.000 0.00 0.00 37.71 3.20
8673 19008 3.181488 CGTGCAGATTCACATCTCTCTCT 60.181 47.826 0.00 0.00 37.71 3.10
8674 19009 4.362279 GTGCAGATTCACATCTCTCTCTC 58.638 47.826 0.00 0.00 37.71 3.20
8675 19010 4.098349 GTGCAGATTCACATCTCTCTCTCT 59.902 45.833 0.00 0.00 37.71 3.10
8676 19011 4.338964 TGCAGATTCACATCTCTCTCTCTC 59.661 45.833 0.00 0.00 37.71 3.20
8677 19012 4.581824 GCAGATTCACATCTCTCTCTCTCT 59.418 45.833 0.00 0.00 37.71 3.10
8678 19013 5.278169 GCAGATTCACATCTCTCTCTCTCTC 60.278 48.000 0.00 0.00 37.71 3.20
8679 19014 6.060136 CAGATTCACATCTCTCTCTCTCTCT 58.940 44.000 0.00 0.00 37.71 3.10
8680 19015 6.204301 CAGATTCACATCTCTCTCTCTCTCTC 59.796 46.154 0.00 0.00 37.71 3.20
8681 19016 5.698741 TTCACATCTCTCTCTCTCTCTCT 57.301 43.478 0.00 0.00 0.00 3.10
8682 19017 5.282055 TCACATCTCTCTCTCTCTCTCTC 57.718 47.826 0.00 0.00 0.00 3.20
8683 19018 4.964897 TCACATCTCTCTCTCTCTCTCTCT 59.035 45.833 0.00 0.00 0.00 3.10
8684 19019 5.069648 TCACATCTCTCTCTCTCTCTCTCTC 59.930 48.000 0.00 0.00 0.00 3.20
8685 19020 5.070180 CACATCTCTCTCTCTCTCTCTCTCT 59.930 48.000 0.00 0.00 0.00 3.10
8686 19021 5.304101 ACATCTCTCTCTCTCTCTCTCTCTC 59.696 48.000 0.00 0.00 0.00 3.20
8687 19022 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
8688 19023 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8689 19024 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8690 19025 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8691 19026 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8692 19027 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8693 19028 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8694 19029 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8695 19030 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8696 19031 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8697 19032 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8698 19033 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8699 19034 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8700 19035 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8701 19036 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8702 19037 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8703 19038 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8704 19039 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8705 19040 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8706 19041 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
8739 19074 1.616327 CCTCCCTCCATGGACCACA 60.616 63.158 11.44 0.00 38.35 4.17
8851 19186 1.031571 GGCGATGGCATCTTCCAACA 61.032 55.000 23.97 0.00 42.47 3.33
8855 19190 2.868583 CGATGGCATCTTCCAACAGTAG 59.131 50.000 23.97 1.38 39.96 2.57
8917 19253 0.037605 CTCCCACGTACCAACTGGAC 60.038 60.000 1.86 0.00 38.94 4.02
8949 19285 1.833630 TGTGATGAAGGCAGGAGTAGG 59.166 52.381 0.00 0.00 0.00 3.18
8950 19286 0.833287 TGATGAAGGCAGGAGTAGGC 59.167 55.000 0.00 0.00 0.00 3.93
9046 19385 4.150897 AGTTGCTCTACAGTTTTCACCA 57.849 40.909 0.00 0.00 0.00 4.17
9048 19387 3.838244 TGCTCTACAGTTTTCACCAGT 57.162 42.857 0.00 0.00 0.00 4.00
9049 19388 3.466836 TGCTCTACAGTTTTCACCAGTG 58.533 45.455 0.00 0.00 0.00 3.66
9054 19393 3.627395 ACAGTTTTCACCAGTGACAGA 57.373 42.857 0.00 0.00 39.66 3.41
9055 19394 3.535561 ACAGTTTTCACCAGTGACAGAG 58.464 45.455 0.00 0.00 39.66 3.35
9056 19395 2.289002 CAGTTTTCACCAGTGACAGAGC 59.711 50.000 0.00 0.00 39.66 4.09
9066 19405 1.016627 GTGACAGAGCAGCAAACACA 58.983 50.000 0.00 0.00 0.00 3.72
9076 19415 5.049129 AGAGCAGCAAACACAGTTTCTATTC 60.049 40.000 0.00 0.00 0.00 1.75
9078 19417 5.049129 AGCAGCAAACACAGTTTCTATTCTC 60.049 40.000 0.00 0.00 0.00 2.87
9079 19418 5.693814 CAGCAAACACAGTTTCTATTCTCC 58.306 41.667 0.00 0.00 0.00 3.71
9080 19419 5.471456 CAGCAAACACAGTTTCTATTCTCCT 59.529 40.000 0.00 0.00 0.00 3.69
9082 19421 5.470098 GCAAACACAGTTTCTATTCTCCTCA 59.530 40.000 0.00 0.00 0.00 3.86
9083 19422 6.348050 GCAAACACAGTTTCTATTCTCCTCAG 60.348 42.308 0.00 0.00 0.00 3.35
9084 19423 6.672266 AACACAGTTTCTATTCTCCTCAGA 57.328 37.500 0.00 0.00 0.00 3.27
9085 19424 6.279513 ACACAGTTTCTATTCTCCTCAGAG 57.720 41.667 0.00 0.00 41.93 3.35
9088 19427 4.959210 CAGTTTCTATTCTCCTCAGAGGGA 59.041 45.833 17.10 9.86 40.83 4.20
9089 19428 5.423610 CAGTTTCTATTCTCCTCAGAGGGAA 59.576 44.000 17.10 17.55 40.83 3.97
9090 19429 5.660864 AGTTTCTATTCTCCTCAGAGGGAAG 59.339 44.000 17.10 7.72 40.83 3.46
9095 19434 0.829990 CTCCTCAGAGGGAAGGAAGC 59.170 60.000 17.10 0.00 35.59 3.86
9104 19443 1.514553 GGAAGGAAGCAATGCAGGC 59.485 57.895 8.35 5.05 0.00 4.85
9124 19463 4.216687 AGGCGGTTTGATTTCATAAAACGA 59.783 37.500 10.83 0.00 46.66 3.85
9145 19484 3.481112 CCGTTTTGGTAGGTAACATGC 57.519 47.619 0.00 0.00 41.41 4.06
9183 19524 6.180472 AGTAAACCAAATACAGGACATGGAG 58.820 40.000 0.00 0.00 35.16 3.86
9209 19550 7.389053 GTGGAGAAGTACAGATGAACTCATTTT 59.611 37.037 0.00 0.00 36.57 1.82
9211 19552 7.148340 GGAGAAGTACAGATGAACTCATTTTGG 60.148 40.741 0.00 0.00 36.57 3.28
9212 19553 7.453393 AGAAGTACAGATGAACTCATTTTGGA 58.547 34.615 0.00 0.00 36.57 3.53
9213 19554 8.105829 AGAAGTACAGATGAACTCATTTTGGAT 58.894 33.333 0.00 0.00 36.57 3.41
9214 19555 7.856145 AGTACAGATGAACTCATTTTGGATC 57.144 36.000 0.00 0.00 36.57 3.36
9215 19556 5.808042 ACAGATGAACTCATTTTGGATCG 57.192 39.130 0.00 0.00 36.57 3.69
9216 19557 5.248640 ACAGATGAACTCATTTTGGATCGT 58.751 37.500 0.00 0.00 36.57 3.73
9217 19558 6.406370 ACAGATGAACTCATTTTGGATCGTA 58.594 36.000 0.00 0.00 36.57 3.43
9218 19559 6.536582 ACAGATGAACTCATTTTGGATCGTAG 59.463 38.462 0.00 0.00 36.57 3.51
9220 19561 6.758886 AGATGAACTCATTTTGGATCGTAGTC 59.241 38.462 0.00 0.00 36.57 2.59
9235 19576 1.209504 GTAGTCCTTGTAGCCATGCCA 59.790 52.381 0.00 0.00 0.00 4.92
9236 19577 0.035056 AGTCCTTGTAGCCATGCCAC 60.035 55.000 0.00 0.00 0.00 5.01
9238 19579 2.114670 CCTTGTAGCCATGCCACGG 61.115 63.158 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.410556 CGGTGAACTCTTTTTAAATTTGATGAT 57.589 29.630 0.00 0.00 0.00 2.45
275 283 9.981114 AACCGATGAACTTTTCTTTTCAAATAT 57.019 25.926 0.00 0.00 35.42 1.28
314 324 2.685388 TGCATGGTTTTTCAGTTCGTGA 59.315 40.909 0.00 0.00 0.00 4.35
404 2291 8.454570 TTCTTCGTTTCCCTATTTACTTGTTT 57.545 30.769 0.00 0.00 0.00 2.83
459 2346 0.318120 CAGAAAAAGTTGCCGGGCAT 59.682 50.000 24.49 6.36 38.76 4.40
484 2371 5.109210 TCCTGTACTGCTTGTATTTCGATG 58.891 41.667 0.00 0.00 33.23 3.84
492 2379 3.981071 AGCAATCCTGTACTGCTTGTA 57.019 42.857 0.95 0.00 43.83 2.41
521 2408 1.095807 GTTGAGCTCGGCCCATTACC 61.096 60.000 9.64 0.00 0.00 2.85
567 2454 3.630312 ACACGCTGGTTACAATTGTTTCT 59.370 39.130 17.78 0.00 0.00 2.52
574 2463 2.614481 CCCTACACACGCTGGTTACAAT 60.614 50.000 0.00 0.00 0.00 2.71
591 2480 2.561478 GCCAATCTTATTCGGCCCTA 57.439 50.000 0.00 0.00 38.67 3.53
598 2487 2.341846 TCACGGGGCCAATCTTATTC 57.658 50.000 4.39 0.00 0.00 1.75
603 2492 0.395724 GGATTTCACGGGGCCAATCT 60.396 55.000 4.39 0.00 0.00 2.40
689 2578 1.003580 GTTTCTGACCCTGCAGATGGA 59.996 52.381 17.39 3.07 43.84 3.41
765 2660 1.067212 GACCGAGCTGAATGGTACGAT 59.933 52.381 0.00 0.00 35.75 3.73
1147 3047 1.373748 CGGACGGCGGAGAGAAAAA 60.374 57.895 13.24 0.00 0.00 1.94
1301 3201 0.838122 AGGACAGGAACAGGACAGGG 60.838 60.000 0.00 0.00 0.00 4.45
1302 3202 0.322975 CAGGACAGGAACAGGACAGG 59.677 60.000 0.00 0.00 0.00 4.00
1303 3203 1.001406 GACAGGACAGGAACAGGACAG 59.999 57.143 0.00 0.00 0.00 3.51
1304 3204 1.048601 GACAGGACAGGAACAGGACA 58.951 55.000 0.00 0.00 0.00 4.02
1305 3205 0.321996 GGACAGGACAGGAACAGGAC 59.678 60.000 0.00 0.00 0.00 3.85
1306 3206 0.836400 GGGACAGGACAGGAACAGGA 60.836 60.000 0.00 0.00 0.00 3.86
1307 3207 0.838122 AGGGACAGGACAGGAACAGG 60.838 60.000 0.00 0.00 0.00 4.00
1308 3208 1.059913 AAGGGACAGGACAGGAACAG 58.940 55.000 0.00 0.00 0.00 3.16
1309 3209 1.420138 GAAAGGGACAGGACAGGAACA 59.580 52.381 0.00 0.00 0.00 3.18
1310 3210 1.608283 CGAAAGGGACAGGACAGGAAC 60.608 57.143 0.00 0.00 0.00 3.62
1311 3211 0.685097 CGAAAGGGACAGGACAGGAA 59.315 55.000 0.00 0.00 0.00 3.36
1347 3247 1.300620 TGCGTCAAAGGACCGACAG 60.301 57.895 0.00 0.00 41.13 3.51
1441 3341 0.691078 CCGAAGATTCTCCCTCCCCA 60.691 60.000 0.00 0.00 0.00 4.96
1608 3509 1.227497 GCCTCAGGATTCTGCTCGG 60.227 63.158 0.00 0.00 40.69 4.63
1613 3514 2.203126 GGCCGCCTCAGGATTCTG 60.203 66.667 0.71 0.00 42.21 3.02
1675 3576 0.545309 CACCAACCTCCTCTCCTCCA 60.545 60.000 0.00 0.00 0.00 3.86
1693 3594 0.033991 CCTCGTCCTCCTCTTCCTCA 60.034 60.000 0.00 0.00 0.00 3.86
1745 3646 0.826715 TTCCTCATCTCCTTGAGCCG 59.173 55.000 0.00 0.00 41.50 5.52
1831 3732 2.358826 GCTACTCCCTTCCTCTTCCTCT 60.359 54.545 0.00 0.00 0.00 3.69
2097 3999 7.391148 AATGTTGCTTCGAAACTAATATGGT 57.609 32.000 0.00 0.00 0.00 3.55
2135 4037 6.932400 TGGATAAAATAGTGCCGTTATGTAGG 59.068 38.462 0.00 0.00 0.00 3.18
2146 4048 6.017852 GCACTTCTAGGTGGATAAAATAGTGC 60.018 42.308 0.00 0.00 45.06 4.40
2202 4104 7.092716 TCACCGTGTAGATTTTTAGAACCTAC 58.907 38.462 0.00 0.00 0.00 3.18
2206 4108 9.673454 ATTTTTCACCGTGTAGATTTTTAGAAC 57.327 29.630 0.00 0.00 0.00 3.01
2222 4124 4.965062 ACAACGTGCTATATTTTTCACCG 58.035 39.130 0.00 0.00 0.00 4.94
2240 4142 4.760204 AGCACCCATACAAAAGACTACAAC 59.240 41.667 0.00 0.00 0.00 3.32
2259 4161 6.863126 ACTCAACATGCAAAAACTATAAGCAC 59.137 34.615 0.00 0.00 38.12 4.40
2361 4263 4.466828 CAGTTGCGTGACAAAAATAGAGG 58.533 43.478 0.00 0.00 40.82 3.69
2373 4275 3.181501 GGCTAAATAATGCAGTTGCGTGA 60.182 43.478 0.00 0.00 45.83 4.35
2377 4279 3.799281 TGGGCTAAATAATGCAGTTGC 57.201 42.857 0.00 0.00 42.50 4.17
2496 4623 5.460419 CCGTCAGTTAGCACAAGAATCTATC 59.540 44.000 0.00 0.00 0.00 2.08
2565 4692 9.176460 ACCAAAAAGTGAAAATCATGAAATTGT 57.824 25.926 0.00 0.00 0.00 2.71
2626 4753 5.006649 GCAACAAATTTTTGGAGTGGAGAAC 59.993 40.000 7.85 0.00 42.34 3.01
2648 4775 9.719355 TTTGAAAGAGTTACTTATGAGTATGCA 57.281 29.630 0.00 0.00 38.14 3.96
2651 4778 9.924650 ACGTTTGAAAGAGTTACTTATGAGTAT 57.075 29.630 0.00 0.00 38.14 2.12
2687 4814 4.518970 ACATGCAGAAAAGAAACGGTATGT 59.481 37.500 0.00 0.00 34.43 2.29
2754 4881 2.606272 CGTATTACGCAAGAAAGGGGAC 59.394 50.000 2.88 0.00 43.62 4.46
2826 5176 5.964958 AGATTATCTGCACTCTAGAGAGC 57.035 43.478 28.88 28.88 45.79 4.09
2912 5332 2.935238 GCTGATTTAGGCGACCTTGTCA 60.935 50.000 3.71 5.82 34.61 3.58
2913 5333 1.666189 GCTGATTTAGGCGACCTTGTC 59.334 52.381 3.71 2.08 34.61 3.18
2935 5355 4.607955 CAGATAGCAGATGCCAATTTGTG 58.392 43.478 0.14 0.00 43.38 3.33
2936 5356 3.067742 GCAGATAGCAGATGCCAATTTGT 59.932 43.478 0.14 0.00 44.79 2.83
3052 5867 6.456501 ACTGACATGGTACTTCAAGACTAAC 58.543 40.000 0.00 0.00 0.00 2.34
3103 5918 6.101150 ACAGTACTGGATGGGCTAATTAATGA 59.899 38.462 26.12 0.00 34.19 2.57
3156 5971 9.551734 CACCATGTAGATTTTCAGAATCTATCA 57.448 33.333 10.61 10.55 40.25 2.15
3157 5972 9.770097 TCACCATGTAGATTTTCAGAATCTATC 57.230 33.333 10.61 6.60 40.25 2.08
3840 6683 3.815856 ATCAGACTCAGGTGCATGTAG 57.184 47.619 0.00 0.00 0.00 2.74
3882 6725 1.496060 CACAGCTATAGGTGGTGGGA 58.504 55.000 30.01 0.00 46.90 4.37
3924 6767 3.777106 AATCTCTGCAACAGAACCTGA 57.223 42.857 0.45 0.00 40.18 3.86
3982 6825 4.160736 TCCGAGAACGTGCATATATCTG 57.839 45.455 0.00 0.00 37.88 2.90
4046 6889 7.477144 TGCAATAACTATAATCCAAGTGTCG 57.523 36.000 0.00 0.00 0.00 4.35
4254 7097 6.607198 TGTCACTGTATGATCCATCAGAACTA 59.393 38.462 12.73 3.19 40.28 2.24
4270 7113 3.127895 GTGCTTTGTTGGTTGTCACTGTA 59.872 43.478 0.00 0.00 0.00 2.74
4289 7132 2.464157 ACTCAGAAGGCTAAGTGTGC 57.536 50.000 0.00 0.00 0.00 4.57
4314 7157 3.819564 TGTCACTGCCCACTACATATC 57.180 47.619 0.00 0.00 0.00 1.63
4335 7178 6.263516 TGTGTATTTACGACTGTTAGAGCT 57.736 37.500 0.00 0.00 0.00 4.09
4522 7365 2.525877 ATACCCACCCCCGATCCG 60.526 66.667 0.00 0.00 0.00 4.18
4618 7461 1.732259 GGAAGTTCCGTGTGCAGTATG 59.268 52.381 6.06 0.00 40.87 2.39
4619 7462 1.346395 TGGAAGTTCCGTGTGCAGTAT 59.654 47.619 17.13 0.00 40.17 2.12
4664 7507 1.271597 GGCTGAGAAAAGGAAGGCTCA 60.272 52.381 0.00 0.00 36.13 4.26
4688 7531 3.139850 CTGCAGCATTAGATCTTGGAGG 58.860 50.000 0.00 0.00 0.00 4.30
4702 7545 3.565961 TTTGATCGCCCCTGCAGCA 62.566 57.895 8.66 0.00 37.32 4.41
4721 7564 3.016736 TGGCATTTAAGTGGAAGCTAGC 58.983 45.455 6.62 6.62 0.00 3.42
5028 7872 3.686241 TGAAATGAATGACCTCGCTCTTG 59.314 43.478 0.00 0.00 0.00 3.02
5034 7878 5.385617 GTGAAAGTGAAATGAATGACCTCG 58.614 41.667 0.00 0.00 0.00 4.63
5041 7885 5.835280 ACTCCTTGGTGAAAGTGAAATGAAT 59.165 36.000 0.00 0.00 33.66 2.57
5082 7926 1.679139 TGCTATTCATTCCCAAGCCG 58.321 50.000 0.00 0.00 32.14 5.52
5086 7930 7.231317 GGTATCTTCAATGCTATTCATTCCCAA 59.769 37.037 0.00 0.00 43.21 4.12
5138 7982 7.042119 ACCAATACAGCAAACAAGTAAAATTGC 60.042 33.333 1.31 1.31 46.43 3.56
5313 8313 3.287222 TGTATGAAAGGGCAATACCAGC 58.713 45.455 0.00 0.00 42.05 4.85
5330 8330 7.108841 ACATCTTAGTACCACGTTCATGTAT 57.891 36.000 0.00 0.00 0.00 2.29
5397 8397 4.222588 ACCCAATGTATCCACAAACCATTG 59.777 41.667 0.00 0.00 41.12 2.82
5398 8398 4.424842 ACCCAATGTATCCACAAACCATT 58.575 39.130 0.00 0.00 38.42 3.16
5670 8672 7.614192 CCTAAGGTGGTTAAAATTCTATGGTGT 59.386 37.037 0.00 0.00 0.00 4.16
5675 8677 5.298527 GCGCCTAAGGTGGTTAAAATTCTAT 59.701 40.000 0.00 0.00 33.18 1.98
5713 8715 1.529010 CCAAGGCAAGCACTGACCA 60.529 57.895 0.00 0.00 30.58 4.02
5717 8719 1.529010 TGTCCCAAGGCAAGCACTG 60.529 57.895 0.00 0.00 0.00 3.66
5813 8815 4.316205 AATTTTGACTGAACGAAACCCC 57.684 40.909 0.00 0.00 0.00 4.95
5838 8840 7.942341 ACTAAACAGTTGAACAGATATTGGGAA 59.058 33.333 0.00 0.00 0.00 3.97
5888 8890 4.036852 TGTCGCAAACAATACCAAATGACA 59.963 37.500 0.00 0.00 34.03 3.58
6198 9201 7.328737 TGTAGGGAAGTAAGAATAACTGAAGC 58.671 38.462 0.00 0.00 0.00 3.86
6389 9395 7.556996 ACTTACTGTCCTATTCACCTAGTAGTG 59.443 40.741 0.00 0.00 39.20 2.74
6391 9397 9.275398 CTACTTACTGTCCTATTCACCTAGTAG 57.725 40.741 0.00 0.00 0.00 2.57
6525 9533 5.341462 CACAGATGAATGCGAAACAGAAAAG 59.659 40.000 0.00 0.00 0.00 2.27
6586 9595 3.593442 AGGGTTCAAGTGTTTCCATCA 57.407 42.857 0.00 0.00 0.00 3.07
6592 12989 3.117663 TGGCTCTTAGGGTTCAAGTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
6641 13038 6.349363 CCACTTAGTCATACGCTGAGCATATA 60.349 42.308 4.88 0.00 33.51 0.86
6809 15409 3.201290 ACACATTAGCTGCAGCATCTAC 58.799 45.455 38.24 10.15 45.16 2.59
6917 15517 3.404224 TGCTACGGGATTTTACACACA 57.596 42.857 0.00 0.00 0.00 3.72
6932 15532 8.992835 AAAATCAGATCAAAGGATTTTGCTAC 57.007 30.769 18.39 0.00 44.86 3.58
7030 15630 4.770795 ACTTCTCCATATCAAGGAAACGG 58.229 43.478 0.00 0.00 34.08 4.44
7131 15735 6.817184 AGTATGTTATACAAGCAGTGGTAGG 58.183 40.000 0.00 0.00 0.00 3.18
7166 15770 4.038361 CGTATAGCAGCAAGTGTACAGAG 58.962 47.826 0.00 0.00 0.00 3.35
7500 16152 7.883391 TTTAACCAACACAATGAAAGGTAGA 57.117 32.000 0.00 0.00 0.00 2.59
7571 17793 5.739161 GCGTTAGGAAAAATGCATTCTACTG 59.261 40.000 13.38 5.93 40.41 2.74
7641 17897 1.014352 GCAACTACCATACCCGCAAG 58.986 55.000 0.00 0.00 0.00 4.01
7644 17900 0.107848 ACAGCAACTACCATACCCGC 60.108 55.000 0.00 0.00 0.00 6.13
7645 17901 1.206132 TGACAGCAACTACCATACCCG 59.794 52.381 0.00 0.00 0.00 5.28
7661 17917 1.281577 TCAACTGCCCATATGCTGACA 59.718 47.619 0.00 0.00 34.63 3.58
7662 17918 2.042686 TCAACTGCCCATATGCTGAC 57.957 50.000 0.00 0.00 34.63 3.51
7673 17929 1.082756 CGTGAACGCTTCAACTGCC 60.083 57.895 2.65 0.00 42.15 4.85
7716 17972 8.027189 TGCGGATTTGGAGATATATATATACGC 58.973 37.037 17.81 17.81 38.84 4.42
7717 17973 9.561270 CTGCGGATTTGGAGATATATATATACG 57.439 37.037 5.19 0.00 0.00 3.06
7721 17977 8.642432 CCTTCTGCGGATTTGGAGATATATATA 58.358 37.037 0.00 0.00 36.15 0.86
7723 17979 6.667848 TCCTTCTGCGGATTTGGAGATATATA 59.332 38.462 0.00 0.00 36.15 0.86
7845 18171 2.069273 CTCGACACCACTTTGATGTCC 58.931 52.381 0.00 0.00 37.63 4.02
7869 18195 0.679002 TCAGCTTGGCCATTCTCAGC 60.679 55.000 17.05 17.05 0.00 4.26
7881 18207 1.924320 GCTGCTCCTTGCTCAGCTTG 61.924 60.000 0.00 0.00 46.93 4.01
7902 18228 1.739562 CTTCTCCTCGCACCACAGC 60.740 63.158 0.00 0.00 0.00 4.40
7996 18322 3.455910 ACTAGCATATGTCTGCCAAAGGA 59.544 43.478 4.29 0.00 43.33 3.36
7997 18323 3.813443 ACTAGCATATGTCTGCCAAAGG 58.187 45.455 4.29 0.00 43.33 3.11
8005 18331 6.452494 ACGAACACTAACTAGCATATGTCT 57.548 37.500 4.29 4.86 0.00 3.41
8006 18332 6.075519 CGAACGAACACTAACTAGCATATGTC 60.076 42.308 4.29 0.00 0.00 3.06
8007 18333 5.742453 CGAACGAACACTAACTAGCATATGT 59.258 40.000 4.29 0.00 0.00 2.29
8008 18334 5.742453 ACGAACGAACACTAACTAGCATATG 59.258 40.000 0.00 0.00 0.00 1.78
8009 18335 5.888105 ACGAACGAACACTAACTAGCATAT 58.112 37.500 0.14 0.00 0.00 1.78
8010 18336 5.300969 ACGAACGAACACTAACTAGCATA 57.699 39.130 0.14 0.00 0.00 3.14
8011 18337 4.170292 ACGAACGAACACTAACTAGCAT 57.830 40.909 0.14 0.00 0.00 3.79
8012 18338 3.631145 ACGAACGAACACTAACTAGCA 57.369 42.857 0.14 0.00 0.00 3.49
8013 18339 4.375706 CCAAACGAACGAACACTAACTAGC 60.376 45.833 0.14 0.00 0.00 3.42
8014 18340 4.375706 GCCAAACGAACGAACACTAACTAG 60.376 45.833 0.14 0.00 0.00 2.57
8015 18341 3.490526 GCCAAACGAACGAACACTAACTA 59.509 43.478 0.14 0.00 0.00 2.24
8016 18342 2.286025 GCCAAACGAACGAACACTAACT 59.714 45.455 0.14 0.00 0.00 2.24
8017 18343 2.600556 GGCCAAACGAACGAACACTAAC 60.601 50.000 0.00 0.00 0.00 2.34
8018 18344 1.598601 GGCCAAACGAACGAACACTAA 59.401 47.619 0.00 0.00 0.00 2.24
8019 18345 1.219646 GGCCAAACGAACGAACACTA 58.780 50.000 0.00 0.00 0.00 2.74
8061 18394 1.686325 TATCGGCCCAGGAAGCAGAC 61.686 60.000 0.00 0.00 37.27 3.51
8062 18395 0.764369 ATATCGGCCCAGGAAGCAGA 60.764 55.000 0.00 0.00 38.78 4.26
8073 18406 5.069251 AGCCTAAGATGTACATATATCGGCC 59.931 44.000 23.08 12.46 32.40 6.13
8076 18409 7.334844 TCCAGCCTAAGATGTACATATATCG 57.665 40.000 8.71 0.00 0.00 2.92
8135 18468 5.701224 TGGAACACCAATCTCTTTTTAGGT 58.299 37.500 0.00 0.00 0.00 3.08
8159 18492 2.622942 GAGCAACACAACTGGATTGGAA 59.377 45.455 0.00 0.00 43.20 3.53
8164 18497 1.242076 GCAGAGCAACACAACTGGAT 58.758 50.000 0.00 0.00 0.00 3.41
8166 18499 0.956633 ATGCAGAGCAACACAACTGG 59.043 50.000 0.00 0.00 43.62 4.00
8307 18642 4.168922 CATGTGCCAATACCTGCATATG 57.831 45.455 6.79 6.79 45.96 1.78
8447 18782 0.607489 ATGCTGGTTCTGGCTGTGAC 60.607 55.000 0.00 0.00 0.00 3.67
8576 18911 0.812549 TTACACTGCCTGCATGCATG 59.187 50.000 22.97 22.70 41.16 4.06
8577 18912 1.100510 CTTACACTGCCTGCATGCAT 58.899 50.000 22.97 6.91 41.16 3.96
8586 18921 2.162408 GGATCAGTTTGCTTACACTGCC 59.838 50.000 0.00 0.00 40.33 4.85
8652 18987 4.098349 AGAGAGAGAGATGTGAATCTGCAC 59.902 45.833 0.00 0.00 39.22 4.57
8653 18988 4.279982 AGAGAGAGAGATGTGAATCTGCA 58.720 43.478 0.00 0.00 0.00 4.41
8654 18989 4.581824 AGAGAGAGAGAGATGTGAATCTGC 59.418 45.833 0.00 0.00 0.00 4.26
8655 18990 6.060136 AGAGAGAGAGAGAGATGTGAATCTG 58.940 44.000 0.00 0.00 0.00 2.90
8656 18991 6.100859 AGAGAGAGAGAGAGAGATGTGAATCT 59.899 42.308 0.00 0.00 0.00 2.40
8657 18992 6.294473 AGAGAGAGAGAGAGAGATGTGAATC 58.706 44.000 0.00 0.00 0.00 2.52
8659 18994 5.426509 AGAGAGAGAGAGAGAGAGATGTGAA 59.573 44.000 0.00 0.00 0.00 3.18
8660 18995 4.964897 AGAGAGAGAGAGAGAGAGATGTGA 59.035 45.833 0.00 0.00 0.00 3.58
8661 18996 5.070180 AGAGAGAGAGAGAGAGAGAGATGTG 59.930 48.000 0.00 0.00 0.00 3.21
8662 18997 5.215069 AGAGAGAGAGAGAGAGAGAGATGT 58.785 45.833 0.00 0.00 0.00 3.06
8663 18998 5.539574 AGAGAGAGAGAGAGAGAGAGAGATG 59.460 48.000 0.00 0.00 0.00 2.90
8664 18999 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
8665 19000 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8666 19001 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8667 19002 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8668 19003 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8669 19004 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8670 19005 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8671 19006 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8672 19007 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8673 19008 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8674 19009 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8675 19010 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8676 19011 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8677 19012 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8678 19013 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8679 19014 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8680 19015 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8681 19016 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8682 19017 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8683 19018 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8684 19019 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8685 19020 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8686 19021 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8687 19022 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8688 19023 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8689 19024 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8690 19025 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8691 19026 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8692 19027 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8693 19028 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8694 19029 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8695 19030 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
8696 19031 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
8697 19032 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
8698 19033 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
8699 19034 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
8700 19035 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
8701 19036 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
8702 19037 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
8703 19038 3.309296 GAGGGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
8704 19039 2.370189 GGAGGGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
8705 19040 2.408565 GGAGGGAGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
8706 19041 1.421646 GGGAGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
8851 19186 4.202367 CCGAGGAATTCCATTAAGGCTACT 60.202 45.833 26.22 0.42 38.89 2.57
8855 19190 2.618709 CACCGAGGAATTCCATTAAGGC 59.381 50.000 26.22 5.61 38.89 4.35
8917 19253 1.441738 TCATCACATGACCTGTTGCG 58.558 50.000 0.00 0.00 35.29 4.85
8949 19285 1.135746 GCACTCAGCACTGAAGAATGC 60.136 52.381 1.42 6.06 44.79 3.56
8950 19286 2.896243 GCACTCAGCACTGAAGAATG 57.104 50.000 1.42 0.17 44.79 2.67
8986 19322 5.591877 GGATCGAACTAGTAAAGTGTCCCTA 59.408 44.000 0.00 0.00 38.88 3.53
8989 19325 5.579564 AGGATCGAACTAGTAAAGTGTCC 57.420 43.478 0.00 0.00 38.88 4.02
9020 19359 6.365518 GGTGAAAACTGTAGAGCAACTAGTAC 59.634 42.308 0.00 0.00 0.00 2.73
9021 19360 6.041182 TGGTGAAAACTGTAGAGCAACTAGTA 59.959 38.462 0.00 0.00 0.00 1.82
9022 19361 5.163343 TGGTGAAAACTGTAGAGCAACTAGT 60.163 40.000 0.00 0.00 0.00 2.57
9046 19385 1.303309 GTGTTTGCTGCTCTGTCACT 58.697 50.000 0.00 0.00 0.00 3.41
9048 19387 1.302366 CTGTGTTTGCTGCTCTGTCA 58.698 50.000 0.00 0.00 0.00 3.58
9049 19388 1.303309 ACTGTGTTTGCTGCTCTGTC 58.697 50.000 0.00 0.00 0.00 3.51
9054 19393 4.823989 AGAATAGAAACTGTGTTTGCTGCT 59.176 37.500 0.00 0.00 0.00 4.24
9055 19394 5.113502 AGAATAGAAACTGTGTTTGCTGC 57.886 39.130 0.10 0.00 0.00 5.25
9056 19395 5.471456 AGGAGAATAGAAACTGTGTTTGCTG 59.529 40.000 0.10 0.00 0.00 4.41
9066 19405 5.213868 TCCCTCTGAGGAGAATAGAAACT 57.786 43.478 25.18 0.00 41.86 2.66
9076 19415 0.829990 GCTTCCTTCCCTCTGAGGAG 59.170 60.000 25.18 14.61 37.67 3.69
9078 19417 0.987294 TTGCTTCCTTCCCTCTGAGG 59.013 55.000 17.02 17.02 34.30 3.86
9079 19418 2.641305 CATTGCTTCCTTCCCTCTGAG 58.359 52.381 0.00 0.00 0.00 3.35
9080 19419 1.340405 GCATTGCTTCCTTCCCTCTGA 60.340 52.381 0.16 0.00 0.00 3.27
9082 19421 0.700564 TGCATTGCTTCCTTCCCTCT 59.299 50.000 10.49 0.00 0.00 3.69
9083 19422 1.101331 CTGCATTGCTTCCTTCCCTC 58.899 55.000 10.49 0.00 0.00 4.30
9084 19423 0.324091 CCTGCATTGCTTCCTTCCCT 60.324 55.000 10.49 0.00 0.00 4.20
9085 19424 1.953231 GCCTGCATTGCTTCCTTCCC 61.953 60.000 10.49 0.00 0.00 3.97
9088 19427 2.345760 CCGCCTGCATTGCTTCCTT 61.346 57.895 10.49 0.00 0.00 3.36
9089 19428 2.753043 CCGCCTGCATTGCTTCCT 60.753 61.111 10.49 0.00 0.00 3.36
9090 19429 2.158561 AAACCGCCTGCATTGCTTCC 62.159 55.000 10.49 0.00 0.00 3.46
9095 19434 1.994779 GAAATCAAACCGCCTGCATTG 59.005 47.619 0.00 0.00 0.00 2.82
9104 19443 4.551892 CGGTCGTTTTATGAAATCAAACCG 59.448 41.667 11.23 11.23 37.17 4.44
9158 19499 6.177610 TCCATGTCCTGTATTTGGTTTACTC 58.822 40.000 0.00 0.00 0.00 2.59
9183 19524 5.392767 TGAGTTCATCTGTACTTCTCCAC 57.607 43.478 0.00 0.00 0.00 4.02
9209 19550 2.029623 GGCTACAAGGACTACGATCCA 58.970 52.381 7.66 0.00 41.73 3.41
9211 19552 3.643763 CATGGCTACAAGGACTACGATC 58.356 50.000 0.00 0.00 0.00 3.69
9212 19553 2.224066 GCATGGCTACAAGGACTACGAT 60.224 50.000 0.00 0.00 0.00 3.73
9213 19554 1.136305 GCATGGCTACAAGGACTACGA 59.864 52.381 0.00 0.00 0.00 3.43
9214 19555 1.571919 GCATGGCTACAAGGACTACG 58.428 55.000 0.00 0.00 0.00 3.51
9215 19556 1.209504 TGGCATGGCTACAAGGACTAC 59.790 52.381 21.08 0.00 0.00 2.73
9216 19557 1.209504 GTGGCATGGCTACAAGGACTA 59.790 52.381 21.08 0.00 39.80 2.59
9217 19558 0.035056 GTGGCATGGCTACAAGGACT 60.035 55.000 21.08 0.00 39.80 3.85
9218 19559 1.369091 CGTGGCATGGCTACAAGGAC 61.369 60.000 21.08 7.18 40.02 3.85
9220 19561 2.114670 CCGTGGCATGGCTACAAGG 61.115 63.158 21.08 8.19 40.02 3.61
9238 19579 2.820037 GCTTCAGGTACGGCTGCC 60.820 66.667 9.11 9.11 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.