Multiple sequence alignment - TraesCS7A01G252300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G252300 chr7A 100.000 3257 0 0 1 3257 237502020 237505276 0.000000e+00 6015
1 TraesCS7A01G252300 chr7A 94.595 111 6 0 154 264 495544246 495544356 4.320000e-39 172
2 TraesCS7A01G252300 chr7D 94.519 2463 100 17 822 3257 222517088 222519542 0.000000e+00 3768
3 TraesCS7A01G252300 chr7B 92.890 1505 69 14 822 2305 174072624 174071137 0.000000e+00 2152
4 TraesCS7A01G252300 chr7B 94.665 956 41 8 2307 3257 174071039 174070089 0.000000e+00 1474
5 TraesCS7A01G252300 chr1B 91.687 409 33 1 398 805 108867122 108867530 1.700000e-157 566
6 TraesCS7A01G252300 chr6B 90.931 419 34 3 398 814 23547733 23547317 7.890000e-156 560
7 TraesCS7A01G252300 chr6B 93.252 163 11 0 1 163 558595394 558595556 1.170000e-59 241
8 TraesCS7A01G252300 chr6B 92.994 157 11 0 1 157 243907603 243907447 2.530000e-56 230
9 TraesCS7A01G252300 chr2D 90.931 419 34 4 398 814 632465935 632465519 7.890000e-156 560
10 TraesCS7A01G252300 chr2D 90.670 418 36 3 398 814 201822280 201821865 1.320000e-153 553
11 TraesCS7A01G252300 chr6A 90.670 418 38 1 398 814 580322198 580321781 3.670000e-154 555
12 TraesCS7A01G252300 chr4D 90.692 419 36 2 398 814 506936058 506936475 3.670000e-154 555
13 TraesCS7A01G252300 chr5B 91.198 409 33 3 398 805 672112000 672112406 1.320000e-153 553
14 TraesCS7A01G252300 chr4A 90.499 421 35 5 398 814 304782539 304782120 4.750000e-153 551
15 TraesCS7A01G252300 chr4A 90.476 420 37 3 398 814 403172194 403171775 4.750000e-153 551
16 TraesCS7A01G252300 chr4A 96.262 107 4 0 156 262 594031546 594031440 3.340000e-40 176
17 TraesCS7A01G252300 chr4A 92.308 117 9 0 146 262 416231385 416231501 2.010000e-37 167
18 TraesCS7A01G252300 chrUn 97.196 107 3 0 156 262 12279384 12279490 7.180000e-42 182
19 TraesCS7A01G252300 chr5A 94.828 116 5 1 150 265 362173232 362173346 2.580000e-41 180
20 TraesCS7A01G252300 chr3A 95.455 110 5 0 153 262 674679441 674679550 3.340000e-40 176
21 TraesCS7A01G252300 chr2A 93.860 114 7 0 149 262 554451987 554451874 4.320000e-39 172
22 TraesCS7A01G252300 chr1A 93.860 114 7 0 152 265 498178706 498178593 4.320000e-39 172
23 TraesCS7A01G252300 chr3D 91.129 124 9 2 143 265 572127550 572127428 2.010000e-37 167
24 TraesCS7A01G252300 chr2B 92.045 88 7 0 76 163 333278241 333278328 1.230000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G252300 chr7A 237502020 237505276 3256 False 6015 6015 100.0000 1 3257 1 chr7A.!!$F1 3256
1 TraesCS7A01G252300 chr7D 222517088 222519542 2454 False 3768 3768 94.5190 822 3257 1 chr7D.!!$F1 2435
2 TraesCS7A01G252300 chr7B 174070089 174072624 2535 True 1813 2152 93.7775 822 3257 2 chr7B.!!$R1 2435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 579 0.033781 GCTGGGCTGCACATTTTCAA 59.966 50.0 4.43 0.0 0.00 2.69 F
679 680 0.108233 TAAACGGGTCGTACCATGCC 60.108 55.0 6.41 0.0 41.02 4.40 F
765 766 0.676466 TTTAGCCCATGTCGTGCCTG 60.676 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 1535 2.362503 ACGGCGTCCTCCATGAGA 60.363 61.111 6.77 0.0 0.00 3.27 R
1651 1674 2.444895 GGAGATGAGGAGGCCGGT 60.445 66.667 1.90 0.0 0.00 5.28 R
2453 2580 2.753452 CAGCTGGCATTTCAGAATCAGT 59.247 45.455 5.57 0.0 36.93 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.146847 GTGTTTAACCAGAGGGAACAGG 58.853 50.000 0.00 0.00 38.05 4.00
22 23 3.050089 TGTTTAACCAGAGGGAACAGGA 58.950 45.455 0.00 0.00 38.05 3.86
23 24 3.460340 TGTTTAACCAGAGGGAACAGGAA 59.540 43.478 0.00 0.00 38.05 3.36
24 25 4.079672 TGTTTAACCAGAGGGAACAGGAAA 60.080 41.667 0.00 0.00 38.05 3.13
25 26 4.799715 TTAACCAGAGGGAACAGGAAAA 57.200 40.909 0.00 0.00 38.05 2.29
26 27 2.959465 ACCAGAGGGAACAGGAAAAG 57.041 50.000 0.00 0.00 38.05 2.27
27 28 2.418669 ACCAGAGGGAACAGGAAAAGA 58.581 47.619 0.00 0.00 38.05 2.52
28 29 2.783510 ACCAGAGGGAACAGGAAAAGAA 59.216 45.455 0.00 0.00 38.05 2.52
29 30 3.149981 CCAGAGGGAACAGGAAAAGAAC 58.850 50.000 0.00 0.00 35.59 3.01
30 31 2.808543 CAGAGGGAACAGGAAAAGAACG 59.191 50.000 0.00 0.00 0.00 3.95
31 32 2.438392 AGAGGGAACAGGAAAAGAACGT 59.562 45.455 0.00 0.00 0.00 3.99
32 33 3.118000 AGAGGGAACAGGAAAAGAACGTT 60.118 43.478 0.00 0.00 0.00 3.99
33 34 2.949644 AGGGAACAGGAAAAGAACGTTG 59.050 45.455 5.00 0.00 0.00 4.10
34 35 2.946990 GGGAACAGGAAAAGAACGTTGA 59.053 45.455 5.00 0.00 0.00 3.18
35 36 3.568430 GGGAACAGGAAAAGAACGTTGAT 59.432 43.478 5.00 0.00 0.00 2.57
36 37 4.537015 GGAACAGGAAAAGAACGTTGATG 58.463 43.478 5.00 0.00 0.00 3.07
37 38 4.274950 GGAACAGGAAAAGAACGTTGATGA 59.725 41.667 5.00 0.00 0.00 2.92
38 39 5.424121 AACAGGAAAAGAACGTTGATGAG 57.576 39.130 5.00 0.00 0.00 2.90
39 40 4.451900 ACAGGAAAAGAACGTTGATGAGT 58.548 39.130 5.00 0.00 0.00 3.41
40 41 4.881850 ACAGGAAAAGAACGTTGATGAGTT 59.118 37.500 5.00 0.00 0.00 3.01
41 42 5.207768 CAGGAAAAGAACGTTGATGAGTTG 58.792 41.667 5.00 0.00 0.00 3.16
42 43 3.975035 GGAAAAGAACGTTGATGAGTTGC 59.025 43.478 5.00 0.00 0.00 4.17
43 44 4.497340 GGAAAAGAACGTTGATGAGTTGCA 60.497 41.667 5.00 0.00 0.00 4.08
44 45 4.836125 AAAGAACGTTGATGAGTTGCAT 57.164 36.364 5.00 0.00 40.77 3.96
45 46 4.836125 AAGAACGTTGATGAGTTGCATT 57.164 36.364 5.00 0.00 37.34 3.56
46 47 4.836125 AGAACGTTGATGAGTTGCATTT 57.164 36.364 5.00 0.00 37.34 2.32
47 48 4.539870 AGAACGTTGATGAGTTGCATTTG 58.460 39.130 5.00 0.00 37.34 2.32
48 49 2.664916 ACGTTGATGAGTTGCATTTGC 58.335 42.857 0.00 0.00 37.34 3.68
60 61 1.621107 GCATTTGCACATCCTCAACG 58.379 50.000 0.00 0.00 41.59 4.10
61 62 1.199789 GCATTTGCACATCCTCAACGA 59.800 47.619 0.00 0.00 41.59 3.85
62 63 2.730090 GCATTTGCACATCCTCAACGAG 60.730 50.000 0.00 0.00 41.59 4.18
63 64 0.874390 TTTGCACATCCTCAACGAGC 59.126 50.000 0.00 0.00 0.00 5.03
64 65 0.035317 TTGCACATCCTCAACGAGCT 59.965 50.000 0.00 0.00 0.00 4.09
65 66 0.390340 TGCACATCCTCAACGAGCTC 60.390 55.000 2.73 2.73 0.00 4.09
66 67 0.390340 GCACATCCTCAACGAGCTCA 60.390 55.000 15.40 0.00 0.00 4.26
67 68 1.941209 GCACATCCTCAACGAGCTCAA 60.941 52.381 15.40 0.00 0.00 3.02
68 69 1.998315 CACATCCTCAACGAGCTCAAG 59.002 52.381 15.40 5.06 0.00 3.02
69 70 1.066573 ACATCCTCAACGAGCTCAAGG 60.067 52.381 15.40 13.87 0.00 3.61
70 71 1.205655 CATCCTCAACGAGCTCAAGGA 59.794 52.381 20.24 20.24 40.27 3.36
71 72 0.891373 TCCTCAACGAGCTCAAGGAG 59.109 55.000 15.40 15.23 32.45 3.69
72 73 0.605589 CCTCAACGAGCTCAAGGAGT 59.394 55.000 15.40 0.00 31.39 3.85
73 74 1.671261 CCTCAACGAGCTCAAGGAGTG 60.671 57.143 15.40 6.98 31.39 3.51
74 75 0.318441 TCAACGAGCTCAAGGAGTGG 59.682 55.000 15.40 0.35 31.39 4.00
75 76 0.318441 CAACGAGCTCAAGGAGTGGA 59.682 55.000 15.40 0.00 31.39 4.02
76 77 1.048601 AACGAGCTCAAGGAGTGGAA 58.951 50.000 15.40 0.00 31.39 3.53
77 78 0.605589 ACGAGCTCAAGGAGTGGAAG 59.394 55.000 15.40 0.00 31.39 3.46
78 79 0.108424 CGAGCTCAAGGAGTGGAAGG 60.108 60.000 15.40 0.00 31.39 3.46
79 80 1.270907 GAGCTCAAGGAGTGGAAGGA 58.729 55.000 9.40 0.00 31.39 3.36
80 81 1.836802 GAGCTCAAGGAGTGGAAGGAT 59.163 52.381 9.40 0.00 31.39 3.24
81 82 1.558756 AGCTCAAGGAGTGGAAGGATG 59.441 52.381 0.00 0.00 31.39 3.51
82 83 2.016096 GCTCAAGGAGTGGAAGGATGC 61.016 57.143 0.00 0.00 31.39 3.91
83 84 1.280133 CTCAAGGAGTGGAAGGATGCA 59.720 52.381 0.00 0.00 0.00 3.96
84 85 1.280133 TCAAGGAGTGGAAGGATGCAG 59.720 52.381 0.00 0.00 0.00 4.41
85 86 0.622665 AAGGAGTGGAAGGATGCAGG 59.377 55.000 0.00 0.00 0.00 4.85
86 87 1.452833 GGAGTGGAAGGATGCAGGC 60.453 63.158 0.00 0.00 0.00 4.85
87 88 1.452833 GAGTGGAAGGATGCAGGCC 60.453 63.158 0.00 0.00 0.00 5.19
88 89 1.919600 GAGTGGAAGGATGCAGGCCT 61.920 60.000 0.00 0.00 37.35 5.19
89 90 0.621571 AGTGGAAGGATGCAGGCCTA 60.622 55.000 3.98 0.00 33.76 3.93
90 91 0.179034 GTGGAAGGATGCAGGCCTAG 60.179 60.000 3.98 0.47 33.76 3.02
91 92 1.348008 TGGAAGGATGCAGGCCTAGG 61.348 60.000 3.98 3.67 33.76 3.02
92 93 1.348775 GGAAGGATGCAGGCCTAGGT 61.349 60.000 3.98 0.00 33.76 3.08
93 94 0.179034 GAAGGATGCAGGCCTAGGTG 60.179 60.000 3.98 2.48 33.76 4.00
94 95 0.916358 AAGGATGCAGGCCTAGGTGT 60.916 55.000 3.98 0.00 33.76 4.16
95 96 0.916358 AGGATGCAGGCCTAGGTGTT 60.916 55.000 3.98 0.00 32.92 3.32
96 97 0.749454 GGATGCAGGCCTAGGTGTTG 60.749 60.000 3.98 7.71 0.00 3.33
97 98 0.749454 GATGCAGGCCTAGGTGTTGG 60.749 60.000 3.98 0.00 0.00 3.77
98 99 1.500783 ATGCAGGCCTAGGTGTTGGT 61.501 55.000 3.98 0.00 0.00 3.67
99 100 0.838554 TGCAGGCCTAGGTGTTGGTA 60.839 55.000 3.98 0.00 0.00 3.25
100 101 0.107654 GCAGGCCTAGGTGTTGGTAG 60.108 60.000 3.98 0.00 0.00 3.18
101 102 0.107654 CAGGCCTAGGTGTTGGTAGC 60.108 60.000 3.98 0.00 0.00 3.58
102 103 0.252742 AGGCCTAGGTGTTGGTAGCT 60.253 55.000 1.29 0.00 0.00 3.32
103 104 0.618981 GGCCTAGGTGTTGGTAGCTT 59.381 55.000 11.31 0.00 0.00 3.74
104 105 1.835531 GGCCTAGGTGTTGGTAGCTTA 59.164 52.381 11.31 0.00 0.00 3.09
105 106 2.419713 GGCCTAGGTGTTGGTAGCTTAC 60.420 54.545 11.31 0.00 0.00 2.34
106 107 2.235402 GCCTAGGTGTTGGTAGCTTACA 59.765 50.000 11.31 0.00 0.00 2.41
107 108 3.118371 GCCTAGGTGTTGGTAGCTTACAT 60.118 47.826 11.31 0.00 0.00 2.29
108 109 4.694339 CCTAGGTGTTGGTAGCTTACATC 58.306 47.826 0.00 3.98 0.00 3.06
109 110 4.161565 CCTAGGTGTTGGTAGCTTACATCA 59.838 45.833 0.00 0.00 0.00 3.07
110 111 4.844349 AGGTGTTGGTAGCTTACATCAT 57.156 40.909 11.68 0.51 0.00 2.45
111 112 5.179452 AGGTGTTGGTAGCTTACATCATT 57.821 39.130 11.68 0.00 0.00 2.57
112 113 5.570320 AGGTGTTGGTAGCTTACATCATTT 58.430 37.500 11.68 0.00 0.00 2.32
113 114 6.010219 AGGTGTTGGTAGCTTACATCATTTT 58.990 36.000 11.68 0.00 0.00 1.82
114 115 7.172342 AGGTGTTGGTAGCTTACATCATTTTA 58.828 34.615 11.68 0.00 0.00 1.52
115 116 7.834181 AGGTGTTGGTAGCTTACATCATTTTAT 59.166 33.333 11.68 0.00 0.00 1.40
116 117 7.915397 GGTGTTGGTAGCTTACATCATTTTATG 59.085 37.037 0.00 0.00 0.00 1.90
117 118 8.673711 GTGTTGGTAGCTTACATCATTTTATGA 58.326 33.333 0.00 0.00 44.55 2.15
118 119 8.892723 TGTTGGTAGCTTACATCATTTTATGAG 58.107 33.333 0.00 0.00 43.53 2.90
119 120 9.109393 GTTGGTAGCTTACATCATTTTATGAGA 57.891 33.333 0.00 0.00 43.53 3.27
120 121 8.893219 TGGTAGCTTACATCATTTTATGAGAG 57.107 34.615 0.00 0.00 43.53 3.20
121 122 8.704668 TGGTAGCTTACATCATTTTATGAGAGA 58.295 33.333 0.00 0.00 43.53 3.10
122 123 9.202273 GGTAGCTTACATCATTTTATGAGAGAG 57.798 37.037 0.00 0.00 43.53 3.20
123 124 9.202273 GTAGCTTACATCATTTTATGAGAGAGG 57.798 37.037 0.00 0.00 43.53 3.69
124 125 8.027524 AGCTTACATCATTTTATGAGAGAGGA 57.972 34.615 0.00 0.00 43.53 3.71
125 126 8.149647 AGCTTACATCATTTTATGAGAGAGGAG 58.850 37.037 0.00 0.00 43.53 3.69
126 127 7.095271 GCTTACATCATTTTATGAGAGAGGAGC 60.095 40.741 0.00 0.00 43.53 4.70
127 128 6.497624 ACATCATTTTATGAGAGAGGAGCT 57.502 37.500 0.00 0.00 43.53 4.09
128 129 6.897986 ACATCATTTTATGAGAGAGGAGCTT 58.102 36.000 0.00 0.00 43.53 3.74
129 130 7.344913 ACATCATTTTATGAGAGAGGAGCTTT 58.655 34.615 0.00 0.00 43.53 3.51
130 131 8.489489 ACATCATTTTATGAGAGAGGAGCTTTA 58.511 33.333 0.00 0.00 43.53 1.85
131 132 8.991026 CATCATTTTATGAGAGAGGAGCTTTAG 58.009 37.037 0.00 0.00 43.53 1.85
132 133 7.504403 TCATTTTATGAGAGAGGAGCTTTAGG 58.496 38.462 0.00 0.00 33.59 2.69
133 134 4.946478 TTATGAGAGAGGAGCTTTAGGC 57.054 45.455 0.00 0.00 42.19 3.93
134 135 2.238084 TGAGAGAGGAGCTTTAGGCA 57.762 50.000 0.00 0.00 44.79 4.75
135 136 2.756907 TGAGAGAGGAGCTTTAGGCAT 58.243 47.619 0.00 0.00 44.79 4.40
136 137 3.916035 TGAGAGAGGAGCTTTAGGCATA 58.084 45.455 0.00 0.00 44.79 3.14
137 138 3.894427 TGAGAGAGGAGCTTTAGGCATAG 59.106 47.826 0.00 0.00 44.79 2.23
138 139 3.238597 AGAGAGGAGCTTTAGGCATAGG 58.761 50.000 0.00 0.00 44.79 2.57
139 140 2.969262 GAGAGGAGCTTTAGGCATAGGT 59.031 50.000 0.00 0.00 44.79 3.08
140 141 2.703007 AGAGGAGCTTTAGGCATAGGTG 59.297 50.000 0.00 0.00 44.79 4.00
141 142 2.436173 GAGGAGCTTTAGGCATAGGTGT 59.564 50.000 0.00 0.00 44.79 4.16
142 143 2.846827 AGGAGCTTTAGGCATAGGTGTT 59.153 45.455 0.00 0.00 44.79 3.32
143 144 2.945668 GGAGCTTTAGGCATAGGTGTTG 59.054 50.000 0.00 0.00 44.79 3.33
144 145 2.945668 GAGCTTTAGGCATAGGTGTTGG 59.054 50.000 0.00 0.00 44.79 3.77
145 146 2.308866 AGCTTTAGGCATAGGTGTTGGT 59.691 45.455 0.00 0.00 44.79 3.67
146 147 2.423538 GCTTTAGGCATAGGTGTTGGTG 59.576 50.000 0.00 0.00 41.35 4.17
147 148 3.686016 CTTTAGGCATAGGTGTTGGTGT 58.314 45.455 0.00 0.00 0.00 4.16
148 149 3.799432 TTAGGCATAGGTGTTGGTGTT 57.201 42.857 0.00 0.00 0.00 3.32
149 150 1.909700 AGGCATAGGTGTTGGTGTTG 58.090 50.000 0.00 0.00 0.00 3.33
150 151 1.423541 AGGCATAGGTGTTGGTGTTGA 59.576 47.619 0.00 0.00 0.00 3.18
151 152 1.812571 GGCATAGGTGTTGGTGTTGAG 59.187 52.381 0.00 0.00 0.00 3.02
152 153 2.504367 GCATAGGTGTTGGTGTTGAGT 58.496 47.619 0.00 0.00 0.00 3.41
153 154 2.884639 GCATAGGTGTTGGTGTTGAGTT 59.115 45.455 0.00 0.00 0.00 3.01
154 155 3.304659 GCATAGGTGTTGGTGTTGAGTTG 60.305 47.826 0.00 0.00 0.00 3.16
155 156 2.507407 AGGTGTTGGTGTTGAGTTGT 57.493 45.000 0.00 0.00 0.00 3.32
156 157 3.637911 AGGTGTTGGTGTTGAGTTGTA 57.362 42.857 0.00 0.00 0.00 2.41
157 158 3.275999 AGGTGTTGGTGTTGAGTTGTAC 58.724 45.455 0.00 0.00 0.00 2.90
158 159 3.054655 AGGTGTTGGTGTTGAGTTGTACT 60.055 43.478 0.00 0.00 0.00 2.73
159 160 3.311596 GGTGTTGGTGTTGAGTTGTACTC 59.688 47.826 0.00 0.00 45.26 2.59
160 161 3.311596 GTGTTGGTGTTGAGTTGTACTCC 59.688 47.826 4.52 0.00 44.44 3.85
161 162 2.876550 GTTGGTGTTGAGTTGTACTCCC 59.123 50.000 4.52 0.00 44.44 4.30
162 163 2.404559 TGGTGTTGAGTTGTACTCCCT 58.595 47.619 4.52 0.00 44.44 4.20
163 164 2.367567 TGGTGTTGAGTTGTACTCCCTC 59.632 50.000 4.52 0.00 44.44 4.30
164 165 2.289506 GGTGTTGAGTTGTACTCCCTCC 60.290 54.545 4.52 2.77 44.44 4.30
165 166 1.616865 TGTTGAGTTGTACTCCCTCCG 59.383 52.381 4.52 0.00 44.44 4.63
166 167 1.617357 GTTGAGTTGTACTCCCTCCGT 59.383 52.381 4.52 0.00 44.44 4.69
167 168 2.005370 TGAGTTGTACTCCCTCCGTT 57.995 50.000 4.52 0.00 44.44 4.44
168 169 1.891150 TGAGTTGTACTCCCTCCGTTC 59.109 52.381 4.52 0.00 44.44 3.95
169 170 1.204231 GAGTTGTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 39.28 3.62
170 171 0.108945 GTTGTACTCCCTCCGTTCCG 60.109 60.000 0.00 0.00 0.00 4.30
171 172 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
172 173 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
173 174 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
174 175 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
175 176 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
176 177 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
177 178 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
178 179 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
179 180 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
180 181 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
181 182 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
182 183 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
183 184 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
184 185 1.266211 CGTTCCGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 35.93 5.87
185 186 1.060122 GTTCCGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 40.06 6.46
186 187 0.458889 TCCGAATTACTTGTCGCGGG 60.459 55.000 6.13 0.00 39.24 6.13
187 188 0.738412 CCGAATTACTTGTCGCGGGT 60.738 55.000 6.13 3.16 35.93 5.28
188 189 1.469595 CCGAATTACTTGTCGCGGGTA 60.470 52.381 6.13 2.12 35.93 3.69
189 190 2.466846 CGAATTACTTGTCGCGGGTAT 58.533 47.619 6.13 0.00 0.00 2.73
190 191 2.217847 CGAATTACTTGTCGCGGGTATG 59.782 50.000 6.13 0.00 0.00 2.39
191 192 3.450578 GAATTACTTGTCGCGGGTATGA 58.549 45.455 6.13 0.00 0.00 2.15
192 193 3.530265 ATTACTTGTCGCGGGTATGAA 57.470 42.857 6.13 0.00 0.00 2.57
193 194 3.530265 TTACTTGTCGCGGGTATGAAT 57.470 42.857 6.13 0.00 0.00 2.57
194 195 1.651987 ACTTGTCGCGGGTATGAATG 58.348 50.000 6.13 0.00 0.00 2.67
195 196 1.066430 ACTTGTCGCGGGTATGAATGT 60.066 47.619 6.13 0.00 0.00 2.71
196 197 2.166870 ACTTGTCGCGGGTATGAATGTA 59.833 45.455 6.13 0.00 0.00 2.29
197 198 3.181469 ACTTGTCGCGGGTATGAATGTAT 60.181 43.478 6.13 0.00 0.00 2.29
198 199 3.021269 TGTCGCGGGTATGAATGTATC 57.979 47.619 6.13 0.00 0.00 2.24
199 200 2.626266 TGTCGCGGGTATGAATGTATCT 59.374 45.455 6.13 0.00 0.00 1.98
200 201 3.822167 TGTCGCGGGTATGAATGTATCTA 59.178 43.478 6.13 0.00 0.00 1.98
201 202 4.082949 TGTCGCGGGTATGAATGTATCTAG 60.083 45.833 6.13 0.00 0.00 2.43
202 203 4.155462 GTCGCGGGTATGAATGTATCTAGA 59.845 45.833 6.13 0.00 0.00 2.43
203 204 4.948004 TCGCGGGTATGAATGTATCTAGAT 59.052 41.667 10.73 10.73 0.00 1.98
204 205 5.037385 CGCGGGTATGAATGTATCTAGATG 58.963 45.833 15.79 0.00 0.00 2.90
205 206 5.393135 CGCGGGTATGAATGTATCTAGATGT 60.393 44.000 15.79 0.00 0.00 3.06
206 207 6.183360 CGCGGGTATGAATGTATCTAGATGTA 60.183 42.308 15.79 4.44 0.00 2.29
207 208 7.468768 CGCGGGTATGAATGTATCTAGATGTAT 60.469 40.741 15.79 6.61 0.00 2.29
208 209 8.198109 GCGGGTATGAATGTATCTAGATGTATT 58.802 37.037 15.79 14.21 0.00 1.89
235 236 9.529325 TTTGTTCTAGATACATCCATTTCTACG 57.471 33.333 0.00 0.00 0.00 3.51
236 237 8.459911 TGTTCTAGATACATCCATTTCTACGA 57.540 34.615 0.00 0.00 0.00 3.43
237 238 9.078990 TGTTCTAGATACATCCATTTCTACGAT 57.921 33.333 0.00 0.00 0.00 3.73
238 239 9.347934 GTTCTAGATACATCCATTTCTACGATG 57.652 37.037 0.00 0.00 39.44 3.84
239 240 8.863872 TCTAGATACATCCATTTCTACGATGA 57.136 34.615 3.44 0.00 37.44 2.92
240 241 8.951243 TCTAGATACATCCATTTCTACGATGAG 58.049 37.037 3.44 0.00 37.44 2.90
241 242 7.531857 AGATACATCCATTTCTACGATGAGT 57.468 36.000 3.44 0.00 37.44 3.41
242 243 8.637196 AGATACATCCATTTCTACGATGAGTA 57.363 34.615 3.44 0.00 37.44 2.59
243 244 8.516234 AGATACATCCATTTCTACGATGAGTAC 58.484 37.037 3.44 0.00 37.44 2.73
244 245 6.716934 ACATCCATTTCTACGATGAGTACT 57.283 37.500 0.00 0.00 37.44 2.73
245 246 7.113658 ACATCCATTTCTACGATGAGTACTT 57.886 36.000 0.00 0.00 37.44 2.24
246 247 7.556844 ACATCCATTTCTACGATGAGTACTTT 58.443 34.615 0.00 0.00 37.44 2.66
247 248 7.492669 ACATCCATTTCTACGATGAGTACTTTG 59.507 37.037 0.00 0.00 37.44 2.77
248 249 7.165460 TCCATTTCTACGATGAGTACTTTGA 57.835 36.000 0.00 0.00 0.00 2.69
249 250 7.608153 TCCATTTCTACGATGAGTACTTTGAA 58.392 34.615 0.00 0.00 0.00 2.69
250 251 8.092068 TCCATTTCTACGATGAGTACTTTGAAA 58.908 33.333 0.00 0.34 33.36 2.69
251 252 8.169268 CCATTTCTACGATGAGTACTTTGAAAC 58.831 37.037 0.00 0.00 32.37 2.78
252 253 6.922980 TTCTACGATGAGTACTTTGAAACG 57.077 37.500 0.00 0.97 0.00 3.60
253 254 5.396484 TCTACGATGAGTACTTTGAAACGG 58.604 41.667 0.00 0.00 0.00 4.44
254 255 4.247267 ACGATGAGTACTTTGAAACGGA 57.753 40.909 0.00 0.00 0.00 4.69
255 256 4.235360 ACGATGAGTACTTTGAAACGGAG 58.765 43.478 0.00 0.00 0.00 4.63
256 257 3.612860 CGATGAGTACTTTGAAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
257 258 3.396260 TGAGTACTTTGAAACGGAGGG 57.604 47.619 0.00 0.00 0.00 4.30
258 259 2.967201 TGAGTACTTTGAAACGGAGGGA 59.033 45.455 0.00 0.00 0.00 4.20
259 260 3.006537 TGAGTACTTTGAAACGGAGGGAG 59.993 47.826 0.00 0.00 0.00 4.30
260 261 2.970640 AGTACTTTGAAACGGAGGGAGT 59.029 45.455 0.00 0.00 0.00 3.85
261 262 4.154942 AGTACTTTGAAACGGAGGGAGTA 58.845 43.478 0.00 0.00 0.00 2.59
262 263 3.397849 ACTTTGAAACGGAGGGAGTAC 57.602 47.619 0.00 0.00 0.00 2.73
263 264 2.970640 ACTTTGAAACGGAGGGAGTACT 59.029 45.455 0.00 0.00 0.00 2.73
264 265 3.390311 ACTTTGAAACGGAGGGAGTACTT 59.610 43.478 0.00 0.00 0.00 2.24
265 266 3.672767 TTGAAACGGAGGGAGTACTTC 57.327 47.619 0.00 0.00 0.00 3.01
266 267 1.897802 TGAAACGGAGGGAGTACTTCC 59.102 52.381 12.91 12.91 46.00 3.46
267 268 2.177734 GAAACGGAGGGAGTACTTCCT 58.822 52.381 23.71 23.71 45.98 3.36
268 269 2.322339 AACGGAGGGAGTACTTCCTT 57.678 50.000 24.27 5.55 45.98 3.36
269 270 1.558233 ACGGAGGGAGTACTTCCTTG 58.442 55.000 24.27 20.46 45.98 3.61
270 271 1.203149 ACGGAGGGAGTACTTCCTTGT 60.203 52.381 24.27 21.08 45.98 3.16
271 272 1.204941 CGGAGGGAGTACTTCCTTGTG 59.795 57.143 24.27 12.77 45.98 3.33
272 273 1.066071 GGAGGGAGTACTTCCTTGTGC 60.066 57.143 24.27 10.93 45.98 4.57
273 274 0.608640 AGGGAGTACTTCCTTGTGCG 59.391 55.000 17.90 0.00 45.98 5.34
274 275 0.391263 GGGAGTACTTCCTTGTGCGG 60.391 60.000 13.55 0.00 45.98 5.69
275 276 0.606604 GGAGTACTTCCTTGTGCGGA 59.393 55.000 0.00 0.00 43.16 5.54
276 277 1.207329 GGAGTACTTCCTTGTGCGGAT 59.793 52.381 0.00 0.00 43.16 4.18
277 278 2.271800 GAGTACTTCCTTGTGCGGATG 58.728 52.381 0.00 0.00 35.11 3.51
278 279 1.623811 AGTACTTCCTTGTGCGGATGT 59.376 47.619 0.00 0.00 42.22 3.06
279 280 2.038557 AGTACTTCCTTGTGCGGATGTT 59.961 45.455 4.09 0.00 40.61 2.71
280 281 1.523758 ACTTCCTTGTGCGGATGTTC 58.476 50.000 0.00 0.00 38.00 3.18
281 282 0.443869 CTTCCTTGTGCGGATGTTCG 59.556 55.000 0.00 0.00 32.02 3.95
289 290 4.191485 CGGATGTTCGCGTCGCAC 62.191 66.667 18.75 9.42 34.02 5.34
290 291 4.191485 GGATGTTCGCGTCGCACG 62.191 66.667 18.75 1.43 45.88 5.34
299 300 3.406361 CGTCGCACGCAAGCTCTT 61.406 61.111 0.00 0.00 45.62 2.85
300 301 2.171940 GTCGCACGCAAGCTCTTG 59.828 61.111 5.31 5.31 45.62 3.02
301 302 2.280119 TCGCACGCAAGCTCTTGT 60.280 55.556 10.86 0.00 42.31 3.16
302 303 1.006688 TCGCACGCAAGCTCTTGTA 60.007 52.632 10.86 0.00 42.31 2.41
303 304 0.598942 TCGCACGCAAGCTCTTGTAA 60.599 50.000 10.86 0.00 42.31 2.41
304 305 0.234625 CGCACGCAAGCTCTTGTAAA 59.765 50.000 10.86 0.00 42.31 2.01
305 306 1.135972 CGCACGCAAGCTCTTGTAAAT 60.136 47.619 10.86 0.00 42.31 1.40
306 307 2.093625 CGCACGCAAGCTCTTGTAAATA 59.906 45.455 10.86 0.00 42.31 1.40
307 308 3.424302 CGCACGCAAGCTCTTGTAAATAA 60.424 43.478 10.86 0.00 42.31 1.40
308 309 3.846335 GCACGCAAGCTCTTGTAAATAAC 59.154 43.478 10.86 0.00 42.31 1.89
309 310 4.403453 CACGCAAGCTCTTGTAAATAACC 58.597 43.478 10.86 0.00 42.31 2.85
310 311 4.154195 CACGCAAGCTCTTGTAAATAACCT 59.846 41.667 10.86 0.00 42.31 3.50
311 312 4.760204 ACGCAAGCTCTTGTAAATAACCTT 59.240 37.500 10.86 0.00 42.31 3.50
312 313 5.106673 ACGCAAGCTCTTGTAAATAACCTTC 60.107 40.000 10.86 0.00 42.31 3.46
313 314 5.122396 CGCAAGCTCTTGTAAATAACCTTCT 59.878 40.000 10.86 0.00 42.31 2.85
314 315 6.317857 GCAAGCTCTTGTAAATAACCTTCTG 58.682 40.000 10.86 0.00 42.31 3.02
315 316 6.072452 GCAAGCTCTTGTAAATAACCTTCTGT 60.072 38.462 10.86 0.00 42.31 3.41
316 317 7.522374 CAAGCTCTTGTAAATAACCTTCTGTC 58.478 38.462 1.61 0.00 35.92 3.51
317 318 7.010339 AGCTCTTGTAAATAACCTTCTGTCT 57.990 36.000 0.00 0.00 0.00 3.41
318 319 7.454225 AGCTCTTGTAAATAACCTTCTGTCTT 58.546 34.615 0.00 0.00 0.00 3.01
319 320 7.939588 AGCTCTTGTAAATAACCTTCTGTCTTT 59.060 33.333 0.00 0.00 0.00 2.52
320 321 8.231161 GCTCTTGTAAATAACCTTCTGTCTTTC 58.769 37.037 0.00 0.00 0.00 2.62
321 322 9.273016 CTCTTGTAAATAACCTTCTGTCTTTCA 57.727 33.333 0.00 0.00 0.00 2.69
322 323 9.793259 TCTTGTAAATAACCTTCTGTCTTTCAT 57.207 29.630 0.00 0.00 0.00 2.57
333 334 9.533831 ACCTTCTGTCTTTCATAAAAATATGGT 57.466 29.630 0.00 0.00 0.00 3.55
337 338 9.661563 TCTGTCTTTCATAAAAATATGGTACGT 57.338 29.630 0.00 0.00 0.00 3.57
338 339 9.916397 CTGTCTTTCATAAAAATATGGTACGTC 57.084 33.333 0.00 0.00 0.00 4.34
339 340 9.438228 TGTCTTTCATAAAAATATGGTACGTCA 57.562 29.630 0.00 0.00 0.00 4.35
344 345 8.160521 TCATAAAAATATGGTACGTCATTGGG 57.839 34.615 0.00 0.00 0.00 4.12
345 346 5.845391 AAAAATATGGTACGTCATTGGGG 57.155 39.130 0.00 0.00 0.00 4.96
346 347 4.513406 AAATATGGTACGTCATTGGGGT 57.487 40.909 0.00 0.00 0.00 4.95
347 348 5.633655 AAATATGGTACGTCATTGGGGTA 57.366 39.130 0.00 0.00 0.00 3.69
348 349 2.994186 ATGGTACGTCATTGGGGTAC 57.006 50.000 0.00 8.68 36.63 3.34
349 350 1.941377 TGGTACGTCATTGGGGTACT 58.059 50.000 13.87 0.00 37.33 2.73
350 351 1.826720 TGGTACGTCATTGGGGTACTC 59.173 52.381 13.87 0.00 37.33 2.59
351 352 2.105766 GGTACGTCATTGGGGTACTCT 58.894 52.381 13.87 0.00 37.33 3.24
352 353 2.100418 GGTACGTCATTGGGGTACTCTC 59.900 54.545 13.87 0.00 37.33 3.20
353 354 0.815734 ACGTCATTGGGGTACTCTCG 59.184 55.000 0.00 0.00 0.00 4.04
354 355 1.100510 CGTCATTGGGGTACTCTCGA 58.899 55.000 0.00 0.00 0.00 4.04
355 356 1.475280 CGTCATTGGGGTACTCTCGAA 59.525 52.381 0.00 0.00 0.00 3.71
356 357 2.479730 CGTCATTGGGGTACTCTCGAAG 60.480 54.545 0.00 0.00 0.00 3.79
357 358 2.758979 GTCATTGGGGTACTCTCGAAGA 59.241 50.000 0.00 0.00 0.00 2.87
358 359 3.194968 GTCATTGGGGTACTCTCGAAGAA 59.805 47.826 0.00 0.00 34.09 2.52
359 360 3.835978 TCATTGGGGTACTCTCGAAGAAA 59.164 43.478 0.00 0.00 34.09 2.52
360 361 4.285003 TCATTGGGGTACTCTCGAAGAAAA 59.715 41.667 0.00 0.00 34.09 2.29
361 362 4.693042 TTGGGGTACTCTCGAAGAAAAA 57.307 40.909 0.00 0.00 34.09 1.94
383 384 7.881775 AAAAAGAGTACAATGAGTCCTGTTT 57.118 32.000 0.00 0.00 32.22 2.83
384 385 6.867662 AAAGAGTACAATGAGTCCTGTTTG 57.132 37.500 0.00 0.00 30.20 2.93
385 386 4.899502 AGAGTACAATGAGTCCTGTTTGG 58.100 43.478 0.00 0.00 37.10 3.28
386 387 4.593206 AGAGTACAATGAGTCCTGTTTGGA 59.407 41.667 0.00 0.00 43.86 3.53
397 398 3.109847 TGTTTGGAACAGACCTGGC 57.890 52.632 0.00 0.00 43.34 4.85
398 399 0.817634 TGTTTGGAACAGACCTGGCG 60.818 55.000 0.00 0.00 43.34 5.69
399 400 1.228124 TTTGGAACAGACCTGGCGG 60.228 57.895 0.00 0.00 42.39 6.13
400 401 3.842925 TTGGAACAGACCTGGCGGC 62.843 63.158 0.00 0.00 42.39 6.53
401 402 4.329545 GGAACAGACCTGGCGGCA 62.330 66.667 12.58 12.58 34.19 5.69
402 403 3.050275 GAACAGACCTGGCGGCAC 61.050 66.667 7.97 0.00 34.19 5.01
425 426 4.506255 GGCCCGGCCTGTGCTAAT 62.506 66.667 22.31 0.00 46.69 1.73
426 427 2.902343 GCCCGGCCTGTGCTAATC 60.902 66.667 0.00 0.00 37.74 1.75
427 428 2.588877 CCCGGCCTGTGCTAATCG 60.589 66.667 0.00 0.00 37.74 3.34
428 429 2.186903 CCGGCCTGTGCTAATCGT 59.813 61.111 0.00 0.00 37.74 3.73
429 430 2.173669 CCGGCCTGTGCTAATCGTG 61.174 63.158 0.00 0.00 37.74 4.35
430 431 2.813179 CGGCCTGTGCTAATCGTGC 61.813 63.158 0.00 0.00 37.74 5.34
431 432 2.472909 GGCCTGTGCTAATCGTGCC 61.473 63.158 0.00 0.00 37.74 5.01
432 433 1.450312 GCCTGTGCTAATCGTGCCT 60.450 57.895 0.00 0.00 33.53 4.75
433 434 1.709147 GCCTGTGCTAATCGTGCCTG 61.709 60.000 0.00 0.00 33.53 4.85
434 435 1.091771 CCTGTGCTAATCGTGCCTGG 61.092 60.000 0.00 0.00 0.00 4.45
435 436 1.709147 CTGTGCTAATCGTGCCTGGC 61.709 60.000 12.87 12.87 0.00 4.85
436 437 2.124736 TGCTAATCGTGCCTGGCC 60.125 61.111 17.53 6.66 0.00 5.36
437 438 2.902343 GCTAATCGTGCCTGGCCC 60.902 66.667 17.53 2.94 0.00 5.80
438 439 2.588877 CTAATCGTGCCTGGCCCG 60.589 66.667 17.67 17.67 0.00 6.13
439 440 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
461 462 4.966787 ACCCGCCATGGCACGTTT 62.967 61.111 34.93 12.23 42.06 3.60
462 463 2.748251 CCCGCCATGGCACGTTTA 60.748 61.111 34.93 0.00 42.06 2.01
463 464 2.336478 CCCGCCATGGCACGTTTAA 61.336 57.895 34.93 0.00 42.06 1.52
464 465 1.662438 CCCGCCATGGCACGTTTAAT 61.662 55.000 34.93 0.00 42.06 1.40
465 466 1.018148 CCGCCATGGCACGTTTAATA 58.982 50.000 34.93 0.00 42.06 0.98
466 467 1.002900 CCGCCATGGCACGTTTAATAG 60.003 52.381 34.93 15.02 42.06 1.73
467 468 1.596954 CGCCATGGCACGTTTAATAGC 60.597 52.381 34.93 4.60 42.06 2.97
471 472 2.019337 GGCACGTTTAATAGCCGGG 58.981 57.895 2.18 0.00 37.41 5.73
472 473 1.354155 GCACGTTTAATAGCCGGGC 59.646 57.895 12.11 12.11 44.35 6.13
473 474 2.019337 CACGTTTAATAGCCGGGCC 58.981 57.895 17.02 0.00 0.00 5.80
474 475 1.522130 ACGTTTAATAGCCGGGCCG 60.522 57.895 21.46 21.46 0.00 6.13
475 476 1.522130 CGTTTAATAGCCGGGCCGT 60.522 57.895 26.32 10.07 0.00 5.68
476 477 1.768112 CGTTTAATAGCCGGGCCGTG 61.768 60.000 26.32 17.25 0.00 4.94
477 478 1.153127 TTTAATAGCCGGGCCGTGG 60.153 57.895 26.32 11.84 0.00 4.94
503 504 4.711949 CCCACTGGCGCTGCTCTT 62.712 66.667 7.64 0.00 0.00 2.85
504 505 2.670934 CCACTGGCGCTGCTCTTT 60.671 61.111 7.64 0.00 0.00 2.52
505 506 2.559840 CACTGGCGCTGCTCTTTG 59.440 61.111 7.64 0.00 0.00 2.77
506 507 2.670934 ACTGGCGCTGCTCTTTGG 60.671 61.111 7.64 0.00 0.00 3.28
507 508 4.112341 CTGGCGCTGCTCTTTGGC 62.112 66.667 7.64 0.00 0.00 4.52
511 512 3.437795 CGCTGCTCTTTGGCCCAG 61.438 66.667 0.00 0.00 0.00 4.45
512 513 3.066814 GCTGCTCTTTGGCCCAGG 61.067 66.667 0.00 0.00 0.00 4.45
513 514 3.066814 CTGCTCTTTGGCCCAGGC 61.067 66.667 0.00 0.00 41.06 4.85
514 515 3.873679 CTGCTCTTTGGCCCAGGCA 62.874 63.158 11.50 7.56 44.11 4.75
515 516 3.376918 GCTCTTTGGCCCAGGCAC 61.377 66.667 11.50 0.50 44.11 5.01
516 517 3.058160 CTCTTTGGCCCAGGCACG 61.058 66.667 11.50 0.00 44.11 5.34
517 518 3.551496 CTCTTTGGCCCAGGCACGA 62.551 63.158 11.50 0.00 44.11 4.35
518 519 3.365265 CTTTGGCCCAGGCACGAC 61.365 66.667 11.50 0.00 44.11 4.34
519 520 3.850098 CTTTGGCCCAGGCACGACT 62.850 63.158 11.50 0.00 44.11 4.18
520 521 3.429372 TTTGGCCCAGGCACGACTT 62.429 57.895 11.50 0.00 44.11 3.01
521 522 4.641645 TGGCCCAGGCACGACTTG 62.642 66.667 11.50 0.00 44.11 3.16
522 523 4.329545 GGCCCAGGCACGACTTGA 62.330 66.667 11.50 0.00 44.11 3.02
523 524 2.045926 GCCCAGGCACGACTTGAT 60.046 61.111 3.12 0.00 41.49 2.57
524 525 1.675641 GCCCAGGCACGACTTGATT 60.676 57.895 3.12 0.00 41.49 2.57
525 526 0.392461 GCCCAGGCACGACTTGATTA 60.392 55.000 3.12 0.00 41.49 1.75
526 527 1.656652 CCCAGGCACGACTTGATTAG 58.343 55.000 0.00 0.00 0.00 1.73
527 528 1.066143 CCCAGGCACGACTTGATTAGT 60.066 52.381 0.00 0.00 40.71 2.24
528 529 2.167693 CCCAGGCACGACTTGATTAGTA 59.832 50.000 0.00 0.00 37.17 1.82
529 530 3.369052 CCCAGGCACGACTTGATTAGTAA 60.369 47.826 0.00 0.00 37.17 2.24
530 531 4.250464 CCAGGCACGACTTGATTAGTAAA 58.750 43.478 0.00 0.00 37.17 2.01
531 532 4.876107 CCAGGCACGACTTGATTAGTAAAT 59.124 41.667 0.00 0.00 37.17 1.40
532 533 5.220662 CCAGGCACGACTTGATTAGTAAATG 60.221 44.000 0.00 0.00 37.17 2.32
533 534 4.876107 AGGCACGACTTGATTAGTAAATGG 59.124 41.667 0.00 0.00 37.17 3.16
534 535 4.035208 GGCACGACTTGATTAGTAAATGGG 59.965 45.833 0.00 0.00 37.17 4.00
535 536 4.495844 GCACGACTTGATTAGTAAATGGGC 60.496 45.833 0.00 0.00 37.17 5.36
536 537 4.035208 CACGACTTGATTAGTAAATGGGCC 59.965 45.833 0.00 0.00 37.17 5.80
537 538 3.247648 CGACTTGATTAGTAAATGGGCCG 59.752 47.826 0.00 0.00 37.17 6.13
538 539 3.551846 ACTTGATTAGTAAATGGGCCGG 58.448 45.455 0.00 0.00 34.56 6.13
539 540 1.975660 TGATTAGTAAATGGGCCGGC 58.024 50.000 21.18 21.18 0.00 6.13
540 541 1.244816 GATTAGTAAATGGGCCGGCC 58.755 55.000 38.57 38.57 0.00 6.13
541 542 0.850784 ATTAGTAAATGGGCCGGCCT 59.149 50.000 42.70 27.02 36.10 5.19
542 543 0.106918 TTAGTAAATGGGCCGGCCTG 60.107 55.000 42.70 0.00 36.10 4.85
543 544 0.983905 TAGTAAATGGGCCGGCCTGA 60.984 55.000 42.70 30.21 36.10 3.86
544 545 1.152756 GTAAATGGGCCGGCCTGAT 60.153 57.895 42.70 30.99 36.10 2.90
545 546 1.152777 TAAATGGGCCGGCCTGATG 60.153 57.895 42.70 0.00 36.10 3.07
546 547 2.638981 TAAATGGGCCGGCCTGATGG 62.639 60.000 42.70 0.00 36.10 3.51
556 557 3.827634 CCTGATGGCCCGTTTAGC 58.172 61.111 0.00 0.00 0.00 3.09
557 558 1.077787 CCTGATGGCCCGTTTAGCA 60.078 57.895 0.00 0.00 0.00 3.49
558 559 1.376609 CCTGATGGCCCGTTTAGCAC 61.377 60.000 0.00 0.00 0.00 4.40
566 567 2.742372 CGTTTAGCACGCTGGGCT 60.742 61.111 10.07 10.07 43.37 5.19
567 568 2.870372 GTTTAGCACGCTGGGCTG 59.130 61.111 14.30 0.00 42.62 4.85
568 569 3.055719 TTTAGCACGCTGGGCTGC 61.056 61.111 14.30 9.91 42.62 5.25
569 570 3.841137 TTTAGCACGCTGGGCTGCA 62.841 57.895 14.30 0.00 42.62 4.41
573 574 3.367743 CACGCTGGGCTGCACATT 61.368 61.111 4.43 0.00 0.00 2.71
574 575 2.598394 ACGCTGGGCTGCACATTT 60.598 55.556 4.43 0.00 0.00 2.32
575 576 2.202395 ACGCTGGGCTGCACATTTT 61.202 52.632 4.43 0.00 0.00 1.82
576 577 1.444895 CGCTGGGCTGCACATTTTC 60.445 57.895 4.43 0.00 0.00 2.29
577 578 1.667151 GCTGGGCTGCACATTTTCA 59.333 52.632 4.43 0.00 0.00 2.69
578 579 0.033781 GCTGGGCTGCACATTTTCAA 59.966 50.000 4.43 0.00 0.00 2.69
579 580 1.787012 CTGGGCTGCACATTTTCAAC 58.213 50.000 4.43 0.00 0.00 3.18
580 581 0.392336 TGGGCTGCACATTTTCAACC 59.608 50.000 0.00 0.00 0.00 3.77
581 582 0.681175 GGGCTGCACATTTTCAACCT 59.319 50.000 0.50 0.00 0.00 3.50
582 583 1.606224 GGGCTGCACATTTTCAACCTG 60.606 52.381 0.50 0.00 0.00 4.00
583 584 1.069049 GGCTGCACATTTTCAACCTGT 59.931 47.619 0.50 0.00 0.00 4.00
584 585 2.483538 GGCTGCACATTTTCAACCTGTT 60.484 45.455 0.50 0.00 0.00 3.16
585 586 2.540931 GCTGCACATTTTCAACCTGTTG 59.459 45.455 3.61 3.61 41.71 3.33
586 587 3.737663 GCTGCACATTTTCAACCTGTTGA 60.738 43.478 8.58 8.58 46.72 3.18
676 677 5.963176 AAAAATTAAACGGGTCGTACCAT 57.037 34.783 6.41 0.00 41.02 3.55
677 678 4.950434 AAATTAAACGGGTCGTACCATG 57.050 40.909 6.41 0.00 41.02 3.66
678 679 1.724429 TTAAACGGGTCGTACCATGC 58.276 50.000 6.41 0.00 41.02 4.06
679 680 0.108233 TAAACGGGTCGTACCATGCC 60.108 55.000 6.41 0.00 41.02 4.40
680 681 2.114488 AAACGGGTCGTACCATGCCA 62.114 55.000 6.41 0.00 41.02 4.92
681 682 2.202878 CGGGTCGTACCATGCCAG 60.203 66.667 6.41 0.00 41.02 4.85
682 683 2.513897 GGGTCGTACCATGCCAGC 60.514 66.667 6.41 0.00 41.02 4.85
683 684 2.513897 GGTCGTACCATGCCAGCC 60.514 66.667 0.00 0.00 38.42 4.85
684 685 2.513897 GTCGTACCATGCCAGCCC 60.514 66.667 0.00 0.00 0.00 5.19
685 686 4.155733 TCGTACCATGCCAGCCCG 62.156 66.667 0.00 0.00 0.00 6.13
701 702 4.514577 CGCGTACCCAGGCTCCAG 62.515 72.222 0.00 0.00 33.32 3.86
702 703 4.162690 GCGTACCCAGGCTCCAGG 62.163 72.222 0.00 0.00 32.73 4.45
703 704 4.162690 CGTACCCAGGCTCCAGGC 62.163 72.222 0.00 0.00 41.43 4.85
759 760 2.006772 GCTCGTTTAGCCCATGTCG 58.993 57.895 0.00 0.00 46.25 4.35
760 761 0.739813 GCTCGTTTAGCCCATGTCGT 60.740 55.000 0.00 0.00 46.25 4.34
761 762 0.999406 CTCGTTTAGCCCATGTCGTG 59.001 55.000 0.00 0.00 0.00 4.35
762 763 1.017177 TCGTTTAGCCCATGTCGTGC 61.017 55.000 0.00 0.00 0.00 5.34
763 764 1.800681 GTTTAGCCCATGTCGTGCC 59.199 57.895 0.00 0.00 0.00 5.01
764 765 0.676782 GTTTAGCCCATGTCGTGCCT 60.677 55.000 0.00 0.00 0.00 4.75
765 766 0.676466 TTTAGCCCATGTCGTGCCTG 60.676 55.000 0.00 0.00 0.00 4.85
766 767 2.535485 TTAGCCCATGTCGTGCCTGG 62.535 60.000 0.00 0.00 33.33 4.45
770 771 4.720902 CATGTCGTGCCTGGCCCA 62.721 66.667 17.53 8.02 0.00 5.36
771 772 3.731728 ATGTCGTGCCTGGCCCAT 61.732 61.111 17.53 10.02 0.00 4.00
772 773 4.720902 TGTCGTGCCTGGCCCATG 62.721 66.667 17.53 3.88 0.00 3.66
911 912 6.956299 TTCGTGTTAAGCTACAAATAGGAC 57.044 37.500 0.00 0.00 0.00 3.85
946 948 7.939039 TCTTGTGAAAACTACTCTTGGATCAAT 59.061 33.333 0.00 0.00 0.00 2.57
947 949 7.439157 TGTGAAAACTACTCTTGGATCAATG 57.561 36.000 0.00 0.00 0.00 2.82
950 952 8.180267 GTGAAAACTACTCTTGGATCAATGATG 58.820 37.037 0.00 0.00 0.00 3.07
952 954 4.712476 ACTACTCTTGGATCAATGATGGC 58.288 43.478 0.00 0.00 0.00 4.40
953 955 3.657398 ACTCTTGGATCAATGATGGCA 57.343 42.857 0.00 0.00 0.00 4.92
954 956 3.552875 ACTCTTGGATCAATGATGGCAG 58.447 45.455 0.00 0.00 0.00 4.85
955 957 3.053842 ACTCTTGGATCAATGATGGCAGT 60.054 43.478 0.00 0.00 0.00 4.40
956 958 3.548770 TCTTGGATCAATGATGGCAGTC 58.451 45.455 0.00 0.00 0.00 3.51
957 959 3.201487 TCTTGGATCAATGATGGCAGTCT 59.799 43.478 0.00 0.00 0.00 3.24
958 960 3.657398 TGGATCAATGATGGCAGTCTT 57.343 42.857 0.00 0.00 0.00 3.01
1005 1028 3.181440 TGAAAGGATGAGGTGATATGGGC 60.181 47.826 0.00 0.00 0.00 5.36
1016 1039 1.224120 TGATATGGGCTCCCTCTTCCT 59.776 52.381 6.50 0.00 36.94 3.36
1151 1174 1.268283 CCTCCTCCCCTTTCTTCGCT 61.268 60.000 0.00 0.00 0.00 4.93
1188 1211 2.154798 CTCAAACTGACCTCGCCCGA 62.155 60.000 0.00 0.00 0.00 5.14
1239 1262 2.429930 CGTCCAAGAACTGCCCCA 59.570 61.111 0.00 0.00 0.00 4.96
1482 1505 3.823330 CTCTACCCGCTCGCCGTT 61.823 66.667 0.00 0.00 34.38 4.44
1651 1674 2.994995 TCGGCCGGCTCAAGAAGA 60.995 61.111 28.56 11.41 0.00 2.87
1797 1820 2.183679 CTGCTCTGGAACCTCTACCTT 58.816 52.381 0.00 0.00 0.00 3.50
2299 2327 3.402628 ACACTAGTGCAACAAGGTAGG 57.597 47.619 22.90 0.00 41.43 3.18
2331 2455 3.641436 TGCTACGATGTACAGGGATGATT 59.359 43.478 0.33 0.00 0.00 2.57
2332 2456 3.990469 GCTACGATGTACAGGGATGATTG 59.010 47.826 0.33 0.00 0.00 2.67
2334 2458 4.487714 ACGATGTACAGGGATGATTGTT 57.512 40.909 0.33 0.00 0.00 2.83
2335 2459 5.607939 ACGATGTACAGGGATGATTGTTA 57.392 39.130 0.33 0.00 0.00 2.41
2336 2460 6.174720 ACGATGTACAGGGATGATTGTTAT 57.825 37.500 0.33 0.00 0.00 1.89
2337 2461 5.991606 ACGATGTACAGGGATGATTGTTATG 59.008 40.000 0.33 0.00 0.00 1.90
2338 2462 5.106948 CGATGTACAGGGATGATTGTTATGC 60.107 44.000 0.33 0.00 0.00 3.14
2339 2463 5.372343 TGTACAGGGATGATTGTTATGCT 57.628 39.130 0.00 0.00 0.00 3.79
2340 2464 6.493189 TGTACAGGGATGATTGTTATGCTA 57.507 37.500 0.00 0.00 0.00 3.49
2341 2465 6.894682 TGTACAGGGATGATTGTTATGCTAA 58.105 36.000 0.00 0.00 0.00 3.09
2395 2520 8.254508 ACTATGGAAGAGTCTTTGTAAGATGAC 58.745 37.037 6.88 0.00 40.18 3.06
2453 2580 9.890629 AATTACAGTACTAGCATCAATTTCTCA 57.109 29.630 0.00 0.00 0.00 3.27
2484 2611 1.019673 ATGCCAGCTGCTACAAATCG 58.980 50.000 8.66 0.00 42.00 3.34
2650 2778 6.372659 TCATGAAATGCAACTTAAGAGGAGTC 59.627 38.462 10.09 5.38 46.21 3.36
2857 2985 1.825191 CACCATCTCCCGGCAATGG 60.825 63.158 20.40 20.40 44.54 3.16
3162 3292 3.781846 CACCGTGTTACAAAACAAACTCG 59.218 43.478 0.00 0.00 46.84 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.146847 CCTGTTCCCTCTGGTTAAACAC 58.853 50.000 0.00 0.00 0.00 3.32
1 2 3.050089 TCCTGTTCCCTCTGGTTAAACA 58.950 45.455 0.00 0.00 0.00 2.83
2 3 3.782656 TCCTGTTCCCTCTGGTTAAAC 57.217 47.619 0.00 0.00 0.00 2.01
3 4 4.799715 TTTCCTGTTCCCTCTGGTTAAA 57.200 40.909 0.00 0.00 0.00 1.52
4 5 4.414182 TCTTTTCCTGTTCCCTCTGGTTAA 59.586 41.667 0.00 0.00 0.00 2.01
5 6 3.977999 TCTTTTCCTGTTCCCTCTGGTTA 59.022 43.478 0.00 0.00 0.00 2.85
6 7 2.783510 TCTTTTCCTGTTCCCTCTGGTT 59.216 45.455 0.00 0.00 0.00 3.67
7 8 2.418669 TCTTTTCCTGTTCCCTCTGGT 58.581 47.619 0.00 0.00 0.00 4.00
8 9 3.149981 GTTCTTTTCCTGTTCCCTCTGG 58.850 50.000 0.00 0.00 0.00 3.86
9 10 2.808543 CGTTCTTTTCCTGTTCCCTCTG 59.191 50.000 0.00 0.00 0.00 3.35
10 11 2.438392 ACGTTCTTTTCCTGTTCCCTCT 59.562 45.455 0.00 0.00 0.00 3.69
11 12 2.847441 ACGTTCTTTTCCTGTTCCCTC 58.153 47.619 0.00 0.00 0.00 4.30
12 13 2.949644 CAACGTTCTTTTCCTGTTCCCT 59.050 45.455 0.00 0.00 0.00 4.20
13 14 2.946990 TCAACGTTCTTTTCCTGTTCCC 59.053 45.455 0.00 0.00 0.00 3.97
14 15 4.274950 TCATCAACGTTCTTTTCCTGTTCC 59.725 41.667 0.00 0.00 0.00 3.62
15 16 5.007724 ACTCATCAACGTTCTTTTCCTGTTC 59.992 40.000 0.00 0.00 0.00 3.18
16 17 4.881850 ACTCATCAACGTTCTTTTCCTGTT 59.118 37.500 0.00 0.00 0.00 3.16
17 18 4.451900 ACTCATCAACGTTCTTTTCCTGT 58.548 39.130 0.00 0.00 0.00 4.00
18 19 5.207768 CAACTCATCAACGTTCTTTTCCTG 58.792 41.667 0.00 0.00 0.00 3.86
19 20 4.261197 GCAACTCATCAACGTTCTTTTCCT 60.261 41.667 0.00 0.00 0.00 3.36
20 21 3.975035 GCAACTCATCAACGTTCTTTTCC 59.025 43.478 0.00 0.00 0.00 3.13
21 22 4.597079 TGCAACTCATCAACGTTCTTTTC 58.403 39.130 0.00 0.00 0.00 2.29
22 23 4.630894 TGCAACTCATCAACGTTCTTTT 57.369 36.364 0.00 0.00 0.00 2.27
23 24 4.836125 ATGCAACTCATCAACGTTCTTT 57.164 36.364 0.00 0.00 0.00 2.52
24 25 4.836125 AATGCAACTCATCAACGTTCTT 57.164 36.364 0.00 0.00 33.40 2.52
25 26 4.539870 CAAATGCAACTCATCAACGTTCT 58.460 39.130 0.00 0.00 33.40 3.01
26 27 3.120121 GCAAATGCAACTCATCAACGTTC 59.880 43.478 0.00 0.00 41.59 3.95
27 28 3.052036 GCAAATGCAACTCATCAACGTT 58.948 40.909 0.00 0.00 41.59 3.99
28 29 2.664916 GCAAATGCAACTCATCAACGT 58.335 42.857 0.00 0.00 41.59 3.99
41 42 1.199789 TCGTTGAGGATGTGCAAATGC 59.800 47.619 0.00 0.00 42.50 3.56
42 43 2.730090 GCTCGTTGAGGATGTGCAAATG 60.730 50.000 0.00 0.00 34.65 2.32
43 44 1.470098 GCTCGTTGAGGATGTGCAAAT 59.530 47.619 0.00 0.00 34.65 2.32
44 45 0.874390 GCTCGTTGAGGATGTGCAAA 59.126 50.000 0.00 0.00 34.65 3.68
45 46 0.035317 AGCTCGTTGAGGATGTGCAA 59.965 50.000 0.00 0.00 36.47 4.08
46 47 0.390340 GAGCTCGTTGAGGATGTGCA 60.390 55.000 0.00 0.00 36.47 4.57
47 48 0.390340 TGAGCTCGTTGAGGATGTGC 60.390 55.000 9.64 0.00 34.71 4.57
48 49 1.998315 CTTGAGCTCGTTGAGGATGTG 59.002 52.381 9.64 0.00 0.00 3.21
49 50 1.066573 CCTTGAGCTCGTTGAGGATGT 60.067 52.381 16.09 0.00 0.00 3.06
50 51 1.205655 TCCTTGAGCTCGTTGAGGATG 59.794 52.381 18.48 0.41 31.82 3.51
51 52 1.480137 CTCCTTGAGCTCGTTGAGGAT 59.520 52.381 21.08 0.00 36.05 3.24
52 53 0.891373 CTCCTTGAGCTCGTTGAGGA 59.109 55.000 20.15 20.15 35.36 3.71
53 54 0.605589 ACTCCTTGAGCTCGTTGAGG 59.394 55.000 22.46 19.07 32.04 3.86
54 55 1.671261 CCACTCCTTGAGCTCGTTGAG 60.671 57.143 19.03 19.03 32.04 3.02
55 56 0.318441 CCACTCCTTGAGCTCGTTGA 59.682 55.000 9.64 4.03 32.04 3.18
56 57 0.318441 TCCACTCCTTGAGCTCGTTG 59.682 55.000 9.64 1.28 32.04 4.10
57 58 1.001406 CTTCCACTCCTTGAGCTCGTT 59.999 52.381 9.64 0.00 32.04 3.85
58 59 0.605589 CTTCCACTCCTTGAGCTCGT 59.394 55.000 9.64 0.00 32.04 4.18
59 60 0.108424 CCTTCCACTCCTTGAGCTCG 60.108 60.000 9.64 0.00 32.04 5.03
60 61 1.270907 TCCTTCCACTCCTTGAGCTC 58.729 55.000 6.82 6.82 32.04 4.09
61 62 1.558756 CATCCTTCCACTCCTTGAGCT 59.441 52.381 0.00 0.00 32.04 4.09
62 63 2.016096 GCATCCTTCCACTCCTTGAGC 61.016 57.143 0.00 0.00 32.04 4.26
63 64 1.280133 TGCATCCTTCCACTCCTTGAG 59.720 52.381 0.00 0.00 35.52 3.02
64 65 1.280133 CTGCATCCTTCCACTCCTTGA 59.720 52.381 0.00 0.00 0.00 3.02
65 66 1.681166 CCTGCATCCTTCCACTCCTTG 60.681 57.143 0.00 0.00 0.00 3.61
66 67 0.622665 CCTGCATCCTTCCACTCCTT 59.377 55.000 0.00 0.00 0.00 3.36
67 68 1.919600 GCCTGCATCCTTCCACTCCT 61.920 60.000 0.00 0.00 0.00 3.69
68 69 1.452833 GCCTGCATCCTTCCACTCC 60.453 63.158 0.00 0.00 0.00 3.85
69 70 1.452833 GGCCTGCATCCTTCCACTC 60.453 63.158 0.00 0.00 0.00 3.51
70 71 0.621571 TAGGCCTGCATCCTTCCACT 60.622 55.000 17.99 0.00 35.21 4.00
71 72 0.179034 CTAGGCCTGCATCCTTCCAC 60.179 60.000 17.99 0.00 35.21 4.02
72 73 1.348008 CCTAGGCCTGCATCCTTCCA 61.348 60.000 17.99 0.00 35.21 3.53
73 74 1.348775 ACCTAGGCCTGCATCCTTCC 61.349 60.000 17.99 0.00 35.21 3.46
74 75 0.179034 CACCTAGGCCTGCATCCTTC 60.179 60.000 17.99 0.00 35.21 3.46
75 76 0.916358 ACACCTAGGCCTGCATCCTT 60.916 55.000 17.99 0.00 35.21 3.36
76 77 0.916358 AACACCTAGGCCTGCATCCT 60.916 55.000 17.99 11.76 37.72 3.24
77 78 0.749454 CAACACCTAGGCCTGCATCC 60.749 60.000 17.99 0.00 0.00 3.51
78 79 0.749454 CCAACACCTAGGCCTGCATC 60.749 60.000 17.99 0.00 0.00 3.91
79 80 1.304282 CCAACACCTAGGCCTGCAT 59.696 57.895 17.99 0.00 0.00 3.96
80 81 0.838554 TACCAACACCTAGGCCTGCA 60.839 55.000 17.99 0.00 0.00 4.41
81 82 0.107654 CTACCAACACCTAGGCCTGC 60.108 60.000 17.99 0.00 0.00 4.85
82 83 0.107654 GCTACCAACACCTAGGCCTG 60.108 60.000 17.99 0.87 0.00 4.85
83 84 0.252742 AGCTACCAACACCTAGGCCT 60.253 55.000 11.78 11.78 0.00 5.19
84 85 0.618981 AAGCTACCAACACCTAGGCC 59.381 55.000 9.30 0.00 0.00 5.19
85 86 2.235402 TGTAAGCTACCAACACCTAGGC 59.765 50.000 9.30 0.00 0.00 3.93
86 87 4.161565 TGATGTAAGCTACCAACACCTAGG 59.838 45.833 7.41 7.41 0.00 3.02
87 88 5.339008 TGATGTAAGCTACCAACACCTAG 57.661 43.478 0.00 0.00 0.00 3.02
88 89 5.950544 ATGATGTAAGCTACCAACACCTA 57.049 39.130 0.00 0.00 0.00 3.08
89 90 4.844349 ATGATGTAAGCTACCAACACCT 57.156 40.909 0.00 0.00 0.00 4.00
90 91 5.897377 AAATGATGTAAGCTACCAACACC 57.103 39.130 0.00 0.00 0.00 4.16
91 92 8.673711 TCATAAAATGATGTAAGCTACCAACAC 58.326 33.333 0.00 0.00 33.59 3.32
92 93 8.800370 TCATAAAATGATGTAAGCTACCAACA 57.200 30.769 0.00 0.00 33.59 3.33
93 94 9.109393 TCTCATAAAATGATGTAAGCTACCAAC 57.891 33.333 0.00 0.00 38.85 3.77
94 95 9.330063 CTCTCATAAAATGATGTAAGCTACCAA 57.670 33.333 0.00 0.00 38.85 3.67
95 96 8.704668 TCTCTCATAAAATGATGTAAGCTACCA 58.295 33.333 0.00 0.00 38.85 3.25
96 97 9.202273 CTCTCTCATAAAATGATGTAAGCTACC 57.798 37.037 0.00 0.00 38.85 3.18
97 98 9.202273 CCTCTCTCATAAAATGATGTAAGCTAC 57.798 37.037 0.00 0.00 38.85 3.58
98 99 9.147732 TCCTCTCTCATAAAATGATGTAAGCTA 57.852 33.333 0.00 0.00 38.85 3.32
99 100 8.027524 TCCTCTCTCATAAAATGATGTAAGCT 57.972 34.615 0.00 0.00 38.85 3.74
100 101 7.095271 GCTCCTCTCTCATAAAATGATGTAAGC 60.095 40.741 0.00 0.00 38.85 3.09
101 102 8.149647 AGCTCCTCTCTCATAAAATGATGTAAG 58.850 37.037 0.00 0.00 38.85 2.34
102 103 8.027524 AGCTCCTCTCTCATAAAATGATGTAA 57.972 34.615 0.00 0.00 38.85 2.41
103 104 7.609097 AGCTCCTCTCTCATAAAATGATGTA 57.391 36.000 0.00 0.00 38.85 2.29
104 105 6.497624 AGCTCCTCTCTCATAAAATGATGT 57.502 37.500 0.00 0.00 38.85 3.06
105 106 7.804843 AAAGCTCCTCTCTCATAAAATGATG 57.195 36.000 0.00 0.00 38.85 3.07
106 107 8.156165 CCTAAAGCTCCTCTCTCATAAAATGAT 58.844 37.037 0.00 0.00 38.85 2.45
107 108 7.504403 CCTAAAGCTCCTCTCTCATAAAATGA 58.496 38.462 0.00 0.00 37.76 2.57
108 109 6.204495 GCCTAAAGCTCCTCTCTCATAAAATG 59.796 42.308 0.00 0.00 38.99 2.32
109 110 6.126652 TGCCTAAAGCTCCTCTCTCATAAAAT 60.127 38.462 0.00 0.00 44.23 1.82
110 111 5.189736 TGCCTAAAGCTCCTCTCTCATAAAA 59.810 40.000 0.00 0.00 44.23 1.52
111 112 4.716784 TGCCTAAAGCTCCTCTCTCATAAA 59.283 41.667 0.00 0.00 44.23 1.40
112 113 4.290093 TGCCTAAAGCTCCTCTCTCATAA 58.710 43.478 0.00 0.00 44.23 1.90
113 114 3.916035 TGCCTAAAGCTCCTCTCTCATA 58.084 45.455 0.00 0.00 44.23 2.15
114 115 2.756907 TGCCTAAAGCTCCTCTCTCAT 58.243 47.619 0.00 0.00 44.23 2.90
115 116 2.238084 TGCCTAAAGCTCCTCTCTCA 57.762 50.000 0.00 0.00 44.23 3.27
116 117 3.258123 CCTATGCCTAAAGCTCCTCTCTC 59.742 52.174 0.00 0.00 44.23 3.20
117 118 3.238597 CCTATGCCTAAAGCTCCTCTCT 58.761 50.000 0.00 0.00 44.23 3.10
118 119 2.969262 ACCTATGCCTAAAGCTCCTCTC 59.031 50.000 0.00 0.00 44.23 3.20
119 120 2.703007 CACCTATGCCTAAAGCTCCTCT 59.297 50.000 0.00 0.00 44.23 3.69
120 121 2.436173 ACACCTATGCCTAAAGCTCCTC 59.564 50.000 0.00 0.00 44.23 3.71
121 122 2.482494 ACACCTATGCCTAAAGCTCCT 58.518 47.619 0.00 0.00 44.23 3.69
122 123 2.945668 CAACACCTATGCCTAAAGCTCC 59.054 50.000 0.00 0.00 44.23 4.70
123 124 2.945668 CCAACACCTATGCCTAAAGCTC 59.054 50.000 0.00 0.00 44.23 4.09
124 125 2.308866 ACCAACACCTATGCCTAAAGCT 59.691 45.455 0.00 0.00 44.23 3.74
125 126 2.423538 CACCAACACCTATGCCTAAAGC 59.576 50.000 0.00 0.00 44.14 3.51
126 127 3.686016 ACACCAACACCTATGCCTAAAG 58.314 45.455 0.00 0.00 0.00 1.85
127 128 3.799432 ACACCAACACCTATGCCTAAA 57.201 42.857 0.00 0.00 0.00 1.85
128 129 3.073209 TCAACACCAACACCTATGCCTAA 59.927 43.478 0.00 0.00 0.00 2.69
129 130 2.640332 TCAACACCAACACCTATGCCTA 59.360 45.455 0.00 0.00 0.00 3.93
130 131 1.423541 TCAACACCAACACCTATGCCT 59.576 47.619 0.00 0.00 0.00 4.75
131 132 1.812571 CTCAACACCAACACCTATGCC 59.187 52.381 0.00 0.00 0.00 4.40
132 133 2.504367 ACTCAACACCAACACCTATGC 58.496 47.619 0.00 0.00 0.00 3.14
133 134 3.882888 ACAACTCAACACCAACACCTATG 59.117 43.478 0.00 0.00 0.00 2.23
134 135 4.164843 ACAACTCAACACCAACACCTAT 57.835 40.909 0.00 0.00 0.00 2.57
135 136 3.637911 ACAACTCAACACCAACACCTA 57.362 42.857 0.00 0.00 0.00 3.08
136 137 2.507407 ACAACTCAACACCAACACCT 57.493 45.000 0.00 0.00 0.00 4.00
137 138 3.275999 AGTACAACTCAACACCAACACC 58.724 45.455 0.00 0.00 0.00 4.16
138 139 3.311596 GGAGTACAACTCAACACCAACAC 59.688 47.826 9.15 0.00 46.79 3.32
139 140 3.537580 GGAGTACAACTCAACACCAACA 58.462 45.455 9.15 0.00 46.79 3.33
140 141 2.876550 GGGAGTACAACTCAACACCAAC 59.123 50.000 9.15 0.00 46.79 3.77
141 142 2.775384 AGGGAGTACAACTCAACACCAA 59.225 45.455 9.15 0.00 46.79 3.67
142 143 2.367567 GAGGGAGTACAACTCAACACCA 59.632 50.000 9.15 0.00 46.79 4.17
143 144 2.289506 GGAGGGAGTACAACTCAACACC 60.290 54.545 9.15 5.78 46.79 4.16
144 145 2.609737 CGGAGGGAGTACAACTCAACAC 60.610 54.545 9.15 0.94 46.79 3.32
145 146 1.616865 CGGAGGGAGTACAACTCAACA 59.383 52.381 9.15 0.00 46.79 3.33
146 147 1.617357 ACGGAGGGAGTACAACTCAAC 59.383 52.381 9.15 1.91 46.79 3.18
147 148 2.005370 ACGGAGGGAGTACAACTCAA 57.995 50.000 9.15 0.00 46.79 3.02
148 149 1.891150 GAACGGAGGGAGTACAACTCA 59.109 52.381 9.15 0.00 46.79 3.41
149 150 1.204231 GGAACGGAGGGAGTACAACTC 59.796 57.143 0.00 0.00 44.32 3.01
150 151 1.264295 GGAACGGAGGGAGTACAACT 58.736 55.000 0.00 0.00 0.00 3.16
151 152 3.828657 GGAACGGAGGGAGTACAAC 57.171 57.895 0.00 0.00 0.00 3.32
165 166 1.060122 CCGCGACAAGTAATTCGGAAC 59.940 52.381 8.23 0.00 39.23 3.62
166 167 1.352114 CCGCGACAAGTAATTCGGAA 58.648 50.000 8.23 0.00 39.23 4.30
167 168 0.458889 CCCGCGACAAGTAATTCGGA 60.459 55.000 8.23 0.00 39.23 4.55
168 169 0.738412 ACCCGCGACAAGTAATTCGG 60.738 55.000 8.23 0.00 35.73 4.30
169 170 1.912001 TACCCGCGACAAGTAATTCG 58.088 50.000 8.23 0.00 38.31 3.34
170 171 3.450578 TCATACCCGCGACAAGTAATTC 58.549 45.455 8.23 0.00 0.00 2.17
171 172 3.530265 TCATACCCGCGACAAGTAATT 57.470 42.857 8.23 0.00 0.00 1.40
172 173 3.530265 TTCATACCCGCGACAAGTAAT 57.470 42.857 8.23 0.00 0.00 1.89
173 174 3.191669 CATTCATACCCGCGACAAGTAA 58.808 45.455 8.23 0.00 0.00 2.24
174 175 2.166870 ACATTCATACCCGCGACAAGTA 59.833 45.455 8.23 4.04 0.00 2.24
175 176 1.066430 ACATTCATACCCGCGACAAGT 60.066 47.619 8.23 1.45 0.00 3.16
176 177 1.651987 ACATTCATACCCGCGACAAG 58.348 50.000 8.23 0.00 0.00 3.16
177 178 2.963548 TACATTCATACCCGCGACAA 57.036 45.000 8.23 0.00 0.00 3.18
178 179 2.626266 AGATACATTCATACCCGCGACA 59.374 45.455 8.23 0.00 0.00 4.35
179 180 3.299340 AGATACATTCATACCCGCGAC 57.701 47.619 8.23 0.00 0.00 5.19
180 181 4.329392 TCTAGATACATTCATACCCGCGA 58.671 43.478 8.23 0.00 0.00 5.87
181 182 4.696899 TCTAGATACATTCATACCCGCG 57.303 45.455 0.00 0.00 0.00 6.46
182 183 5.967088 ACATCTAGATACATTCATACCCGC 58.033 41.667 4.54 0.00 0.00 6.13
209 210 9.529325 CGTAGAAATGGATGTATCTAGAACAAA 57.471 33.333 0.00 0.00 0.00 2.83
210 211 8.909923 TCGTAGAAATGGATGTATCTAGAACAA 58.090 33.333 0.00 0.00 0.00 2.83
211 212 8.459911 TCGTAGAAATGGATGTATCTAGAACA 57.540 34.615 0.00 3.39 0.00 3.18
212 213 9.347934 CATCGTAGAAATGGATGTATCTAGAAC 57.652 37.037 0.00 0.00 43.58 3.01
213 214 9.297037 TCATCGTAGAAATGGATGTATCTAGAA 57.703 33.333 0.00 0.00 43.58 2.10
214 215 8.863872 TCATCGTAGAAATGGATGTATCTAGA 57.136 34.615 0.00 0.00 43.58 2.43
215 216 8.735315 ACTCATCGTAGAAATGGATGTATCTAG 58.265 37.037 0.80 0.00 43.58 2.43
216 217 8.637196 ACTCATCGTAGAAATGGATGTATCTA 57.363 34.615 0.80 0.00 43.58 1.98
217 218 7.531857 ACTCATCGTAGAAATGGATGTATCT 57.468 36.000 0.80 0.00 43.58 1.98
218 219 8.516234 AGTACTCATCGTAGAAATGGATGTATC 58.484 37.037 0.00 0.00 43.58 2.24
219 220 8.410673 AGTACTCATCGTAGAAATGGATGTAT 57.589 34.615 0.00 0.00 43.58 2.29
220 221 7.818997 AGTACTCATCGTAGAAATGGATGTA 57.181 36.000 0.00 0.00 43.58 2.29
221 222 6.716934 AGTACTCATCGTAGAAATGGATGT 57.283 37.500 0.00 0.00 43.58 3.06
222 223 7.706607 TCAAAGTACTCATCGTAGAAATGGATG 59.293 37.037 0.00 0.00 43.58 3.51
223 224 7.782049 TCAAAGTACTCATCGTAGAAATGGAT 58.218 34.615 0.00 0.00 43.58 3.41
224 225 7.165460 TCAAAGTACTCATCGTAGAAATGGA 57.835 36.000 0.00 0.00 43.58 3.41
225 226 7.827819 TTCAAAGTACTCATCGTAGAAATGG 57.172 36.000 0.00 0.00 43.58 3.16
226 227 7.893236 CGTTTCAAAGTACTCATCGTAGAAATG 59.107 37.037 0.00 2.02 43.58 2.32
227 228 7.063074 CCGTTTCAAAGTACTCATCGTAGAAAT 59.937 37.037 0.00 0.00 43.58 2.17
228 229 6.364165 CCGTTTCAAAGTACTCATCGTAGAAA 59.636 38.462 0.00 0.00 43.58 2.52
229 230 5.860182 CCGTTTCAAAGTACTCATCGTAGAA 59.140 40.000 0.00 0.00 43.58 2.10
230 231 5.181811 TCCGTTTCAAAGTACTCATCGTAGA 59.818 40.000 0.00 0.00 45.75 2.59
231 232 5.396484 TCCGTTTCAAAGTACTCATCGTAG 58.604 41.667 0.00 0.00 0.00 3.51
232 233 5.375417 TCCGTTTCAAAGTACTCATCGTA 57.625 39.130 0.00 0.00 0.00 3.43
233 234 4.235360 CTCCGTTTCAAAGTACTCATCGT 58.765 43.478 0.00 0.00 0.00 3.73
234 235 3.612860 CCTCCGTTTCAAAGTACTCATCG 59.387 47.826 0.00 0.00 0.00 3.84
235 236 3.933332 CCCTCCGTTTCAAAGTACTCATC 59.067 47.826 0.00 0.00 0.00 2.92
236 237 3.581332 TCCCTCCGTTTCAAAGTACTCAT 59.419 43.478 0.00 0.00 0.00 2.90
237 238 2.967201 TCCCTCCGTTTCAAAGTACTCA 59.033 45.455 0.00 0.00 0.00 3.41
238 239 3.006644 ACTCCCTCCGTTTCAAAGTACTC 59.993 47.826 0.00 0.00 0.00 2.59
239 240 2.970640 ACTCCCTCCGTTTCAAAGTACT 59.029 45.455 0.00 0.00 0.00 2.73
240 241 3.397849 ACTCCCTCCGTTTCAAAGTAC 57.602 47.619 0.00 0.00 0.00 2.73
241 242 4.154942 AGTACTCCCTCCGTTTCAAAGTA 58.845 43.478 0.00 0.00 0.00 2.24
242 243 2.970640 AGTACTCCCTCCGTTTCAAAGT 59.029 45.455 0.00 0.00 0.00 2.66
243 244 3.679824 AGTACTCCCTCCGTTTCAAAG 57.320 47.619 0.00 0.00 0.00 2.77
244 245 3.244318 GGAAGTACTCCCTCCGTTTCAAA 60.244 47.826 0.00 0.00 38.44 2.69
245 246 2.301009 GGAAGTACTCCCTCCGTTTCAA 59.699 50.000 0.00 0.00 38.44 2.69
246 247 1.897802 GGAAGTACTCCCTCCGTTTCA 59.102 52.381 0.00 0.00 38.44 2.69
247 248 2.177734 AGGAAGTACTCCCTCCGTTTC 58.822 52.381 0.00 0.00 46.81 2.78
248 249 2.302157 CAAGGAAGTACTCCCTCCGTTT 59.698 50.000 0.00 0.00 46.81 3.60
249 250 1.900486 CAAGGAAGTACTCCCTCCGTT 59.100 52.381 0.00 0.00 46.81 4.44
250 251 1.203149 ACAAGGAAGTACTCCCTCCGT 60.203 52.381 0.00 0.00 46.81 4.69
251 252 1.204941 CACAAGGAAGTACTCCCTCCG 59.795 57.143 0.00 0.00 46.81 4.63
252 253 1.066071 GCACAAGGAAGTACTCCCTCC 60.066 57.143 0.00 2.10 46.81 4.30
253 254 1.404315 CGCACAAGGAAGTACTCCCTC 60.404 57.143 0.00 0.00 46.81 4.30
254 255 0.608640 CGCACAAGGAAGTACTCCCT 59.391 55.000 0.00 0.00 46.81 4.20
255 256 0.391263 CCGCACAAGGAAGTACTCCC 60.391 60.000 0.00 0.00 46.81 4.30
256 257 0.606604 TCCGCACAAGGAAGTACTCC 59.393 55.000 0.00 0.00 45.81 3.85
257 258 2.271800 CATCCGCACAAGGAAGTACTC 58.728 52.381 0.00 0.00 44.50 2.59
258 259 1.623811 ACATCCGCACAAGGAAGTACT 59.376 47.619 0.00 0.00 44.50 2.73
259 260 2.094762 ACATCCGCACAAGGAAGTAC 57.905 50.000 0.00 0.00 44.50 2.73
260 261 2.695359 GAACATCCGCACAAGGAAGTA 58.305 47.619 0.00 0.00 40.85 2.24
261 262 1.523758 GAACATCCGCACAAGGAAGT 58.476 50.000 0.00 0.00 43.22 3.01
262 263 0.443869 CGAACATCCGCACAAGGAAG 59.556 55.000 0.00 0.00 44.50 3.46
263 264 2.539003 CGAACATCCGCACAAGGAA 58.461 52.632 0.00 0.00 44.50 3.36
264 265 4.277239 CGAACATCCGCACAAGGA 57.723 55.556 0.00 0.00 45.54 3.36
272 273 4.191485 GTGCGACGCGAACATCCG 62.191 66.667 15.93 7.25 35.17 4.18
273 274 4.191485 CGTGCGACGCGAACATCC 62.191 66.667 15.93 0.00 39.94 3.51
282 283 3.406361 AAGAGCTTGCGTGCGACG 61.406 61.111 4.61 4.61 45.88 5.12
283 284 1.282248 TACAAGAGCTTGCGTGCGAC 61.282 55.000 9.99 0.00 44.03 5.19
284 285 0.598942 TTACAAGAGCTTGCGTGCGA 60.599 50.000 9.99 0.00 44.03 5.10
285 286 0.234625 TTTACAAGAGCTTGCGTGCG 59.765 50.000 9.99 0.00 44.03 5.34
286 287 2.619013 ATTTACAAGAGCTTGCGTGC 57.381 45.000 9.99 0.00 44.03 5.34
287 288 4.154195 AGGTTATTTACAAGAGCTTGCGTG 59.846 41.667 9.99 0.00 44.03 5.34
288 289 4.324267 AGGTTATTTACAAGAGCTTGCGT 58.676 39.130 9.99 0.00 44.03 5.24
289 290 4.946784 AGGTTATTTACAAGAGCTTGCG 57.053 40.909 9.99 0.00 44.03 4.85
290 291 6.072452 ACAGAAGGTTATTTACAAGAGCTTGC 60.072 38.462 9.99 0.00 44.03 4.01
291 292 7.389053 AGACAGAAGGTTATTTACAAGAGCTTG 59.611 37.037 8.60 8.60 45.58 4.01
292 293 7.454225 AGACAGAAGGTTATTTACAAGAGCTT 58.546 34.615 0.00 0.00 33.04 3.74
293 294 7.010339 AGACAGAAGGTTATTTACAAGAGCT 57.990 36.000 0.00 0.00 0.00 4.09
294 295 7.674471 AAGACAGAAGGTTATTTACAAGAGC 57.326 36.000 0.00 0.00 0.00 4.09
295 296 9.273016 TGAAAGACAGAAGGTTATTTACAAGAG 57.727 33.333 0.00 0.00 0.00 2.85
296 297 9.793259 ATGAAAGACAGAAGGTTATTTACAAGA 57.207 29.630 0.00 0.00 0.00 3.02
307 308 9.533831 ACCATATTTTTATGAAAGACAGAAGGT 57.466 29.630 0.00 0.00 31.27 3.50
311 312 9.661563 ACGTACCATATTTTTATGAAAGACAGA 57.338 29.630 0.00 0.00 0.00 3.41
312 313 9.916397 GACGTACCATATTTTTATGAAAGACAG 57.084 33.333 0.00 0.00 0.00 3.51
313 314 9.438228 TGACGTACCATATTTTTATGAAAGACA 57.562 29.630 0.00 0.00 0.00 3.41
318 319 8.625651 CCCAATGACGTACCATATTTTTATGAA 58.374 33.333 0.00 0.00 0.00 2.57
319 320 7.229707 CCCCAATGACGTACCATATTTTTATGA 59.770 37.037 0.00 0.00 0.00 2.15
320 321 7.013846 ACCCCAATGACGTACCATATTTTTATG 59.986 37.037 0.00 0.00 0.00 1.90
321 322 7.064229 ACCCCAATGACGTACCATATTTTTAT 58.936 34.615 0.00 0.00 0.00 1.40
322 323 6.424883 ACCCCAATGACGTACCATATTTTTA 58.575 36.000 0.00 0.00 0.00 1.52
323 324 5.265989 ACCCCAATGACGTACCATATTTTT 58.734 37.500 0.00 0.00 0.00 1.94
324 325 4.862371 ACCCCAATGACGTACCATATTTT 58.138 39.130 0.00 0.00 0.00 1.82
325 326 4.513406 ACCCCAATGACGTACCATATTT 57.487 40.909 0.00 0.00 0.00 1.40
326 327 4.657039 AGTACCCCAATGACGTACCATATT 59.343 41.667 0.00 0.00 34.22 1.28
327 328 4.228824 AGTACCCCAATGACGTACCATAT 58.771 43.478 0.00 0.00 34.22 1.78
328 329 3.638160 GAGTACCCCAATGACGTACCATA 59.362 47.826 0.00 0.00 34.22 2.74
329 330 2.433239 GAGTACCCCAATGACGTACCAT 59.567 50.000 0.00 0.00 34.22 3.55
330 331 1.826720 GAGTACCCCAATGACGTACCA 59.173 52.381 0.00 0.00 34.22 3.25
331 332 2.100418 GAGAGTACCCCAATGACGTACC 59.900 54.545 0.00 0.00 34.22 3.34
332 333 2.223433 CGAGAGTACCCCAATGACGTAC 60.223 54.545 0.00 2.82 33.97 3.67
333 334 2.019249 CGAGAGTACCCCAATGACGTA 58.981 52.381 0.00 0.00 0.00 3.57
334 335 0.815734 CGAGAGTACCCCAATGACGT 59.184 55.000 0.00 0.00 0.00 4.34
335 336 1.100510 TCGAGAGTACCCCAATGACG 58.899 55.000 0.00 0.00 0.00 4.35
336 337 2.758979 TCTTCGAGAGTACCCCAATGAC 59.241 50.000 0.00 0.00 0.00 3.06
337 338 3.095912 TCTTCGAGAGTACCCCAATGA 57.904 47.619 0.00 0.00 0.00 2.57
338 339 3.887621 TTCTTCGAGAGTACCCCAATG 57.112 47.619 0.00 0.00 0.00 2.82
339 340 4.903045 TTTTCTTCGAGAGTACCCCAAT 57.097 40.909 0.00 0.00 0.00 3.16
340 341 4.693042 TTTTTCTTCGAGAGTACCCCAA 57.307 40.909 0.00 0.00 0.00 4.12
359 360 7.201821 CCAAACAGGACTCATTGTACTCTTTTT 60.202 37.037 0.00 0.00 37.88 1.94
360 361 6.263168 CCAAACAGGACTCATTGTACTCTTTT 59.737 38.462 0.00 0.00 37.88 2.27
361 362 5.765182 CCAAACAGGACTCATTGTACTCTTT 59.235 40.000 0.00 0.00 37.88 2.52
362 363 5.071788 TCCAAACAGGACTCATTGTACTCTT 59.928 40.000 0.00 0.00 43.07 2.85
363 364 4.593206 TCCAAACAGGACTCATTGTACTCT 59.407 41.667 0.00 0.00 43.07 3.24
364 365 4.894784 TCCAAACAGGACTCATTGTACTC 58.105 43.478 0.00 0.00 43.07 2.59
365 366 4.974645 TCCAAACAGGACTCATTGTACT 57.025 40.909 0.00 0.00 43.07 2.73
379 380 0.817634 CGCCAGGTCTGTTCCAAACA 60.818 55.000 0.00 0.00 39.52 2.83
380 381 1.515521 CCGCCAGGTCTGTTCCAAAC 61.516 60.000 0.00 0.00 0.00 2.93
381 382 1.228124 CCGCCAGGTCTGTTCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
382 383 2.429930 CCGCCAGGTCTGTTCCAA 59.570 61.111 0.00 0.00 0.00 3.53
383 384 4.329545 GCCGCCAGGTCTGTTCCA 62.330 66.667 0.00 0.00 40.50 3.53
384 385 4.329545 TGCCGCCAGGTCTGTTCC 62.330 66.667 0.00 0.00 40.50 3.62
385 386 3.050275 GTGCCGCCAGGTCTGTTC 61.050 66.667 0.00 0.00 40.50 3.18
386 387 4.988598 CGTGCCGCCAGGTCTGTT 62.989 66.667 0.00 0.00 40.50 3.16
409 410 2.902343 GATTAGCACAGGCCGGGC 60.902 66.667 22.67 22.67 42.56 6.13
410 411 2.588877 CGATTAGCACAGGCCGGG 60.589 66.667 8.08 1.20 42.56 5.73
411 412 2.173669 CACGATTAGCACAGGCCGG 61.174 63.158 0.00 0.00 42.56 6.13
412 413 2.813179 GCACGATTAGCACAGGCCG 61.813 63.158 0.00 0.00 42.56 6.13
413 414 2.472909 GGCACGATTAGCACAGGCC 61.473 63.158 0.00 0.00 42.56 5.19
414 415 1.450312 AGGCACGATTAGCACAGGC 60.450 57.895 0.00 0.00 41.61 4.85
415 416 1.091771 CCAGGCACGATTAGCACAGG 61.092 60.000 0.00 0.00 0.00 4.00
416 417 1.709147 GCCAGGCACGATTAGCACAG 61.709 60.000 6.55 0.00 0.00 3.66
417 418 1.745115 GCCAGGCACGATTAGCACA 60.745 57.895 6.55 0.00 0.00 4.57
418 419 2.472909 GGCCAGGCACGATTAGCAC 61.473 63.158 15.19 0.00 0.00 4.40
419 420 2.124736 GGCCAGGCACGATTAGCA 60.125 61.111 15.19 0.00 0.00 3.49
420 421 2.902343 GGGCCAGGCACGATTAGC 60.902 66.667 15.19 0.00 0.00 3.09
444 445 3.554696 TAAACGTGCCATGGCGGGT 62.555 57.895 30.87 26.42 45.51 5.28
445 446 1.662438 ATTAAACGTGCCATGGCGGG 61.662 55.000 30.87 25.76 45.51 6.13
446 447 1.002900 CTATTAAACGTGCCATGGCGG 60.003 52.381 30.87 26.12 45.51 6.13
447 448 1.596954 GCTATTAAACGTGCCATGGCG 60.597 52.381 30.87 20.22 45.51 5.69
448 449 1.269051 GGCTATTAAACGTGCCATGGC 60.269 52.381 30.54 30.54 44.34 4.40
449 450 1.002900 CGGCTATTAAACGTGCCATGG 60.003 52.381 7.63 7.63 45.13 3.66
450 451 1.002900 CCGGCTATTAAACGTGCCATG 60.003 52.381 12.24 0.00 45.13 3.66
451 452 1.305201 CCGGCTATTAAACGTGCCAT 58.695 50.000 12.24 0.00 45.13 4.40
452 453 0.745128 CCCGGCTATTAAACGTGCCA 60.745 55.000 12.24 0.00 45.13 4.92
453 454 2.019337 CCCGGCTATTAAACGTGCC 58.981 57.895 0.00 2.35 41.76 5.01
454 455 1.354155 GCCCGGCTATTAAACGTGC 59.646 57.895 0.71 0.00 0.00 5.34
455 456 1.768112 CGGCCCGGCTATTAAACGTG 61.768 60.000 9.86 0.00 0.00 4.49
456 457 1.522130 CGGCCCGGCTATTAAACGT 60.522 57.895 9.86 0.00 0.00 3.99
457 458 1.522130 ACGGCCCGGCTATTAAACG 60.522 57.895 8.57 4.87 0.00 3.60
458 459 1.441732 CCACGGCCCGGCTATTAAAC 61.442 60.000 8.57 0.00 0.00 2.01
459 460 1.153127 CCACGGCCCGGCTATTAAA 60.153 57.895 8.57 0.00 0.00 1.52
460 461 2.506962 CCACGGCCCGGCTATTAA 59.493 61.111 8.57 0.00 0.00 1.40
461 462 4.244463 GCCACGGCCCGGCTATTA 62.244 66.667 21.17 0.00 46.56 0.98
486 487 4.711949 AAGAGCAGCGCCAGTGGG 62.712 66.667 12.15 2.02 37.18 4.61
487 488 2.670934 AAAGAGCAGCGCCAGTGG 60.671 61.111 2.29 4.20 0.00 4.00
488 489 2.559840 CAAAGAGCAGCGCCAGTG 59.440 61.111 2.29 0.00 0.00 3.66
489 490 2.670934 CCAAAGAGCAGCGCCAGT 60.671 61.111 2.29 0.00 0.00 4.00
490 491 4.112341 GCCAAAGAGCAGCGCCAG 62.112 66.667 2.29 0.00 0.00 4.85
494 495 3.437795 CTGGGCCAAAGAGCAGCG 61.438 66.667 8.04 0.00 0.00 5.18
495 496 3.066814 CCTGGGCCAAAGAGCAGC 61.067 66.667 8.04 0.00 0.00 5.25
496 497 3.066814 GCCTGGGCCAAAGAGCAG 61.067 66.667 8.04 0.46 34.56 4.24
497 498 3.900862 TGCCTGGGCCAAAGAGCA 61.901 61.111 8.04 11.87 41.09 4.26
498 499 3.376918 GTGCCTGGGCCAAAGAGC 61.377 66.667 8.04 9.14 41.09 4.09
499 500 3.058160 CGTGCCTGGGCCAAAGAG 61.058 66.667 8.04 0.00 41.09 2.85
500 501 3.565214 TCGTGCCTGGGCCAAAGA 61.565 61.111 8.04 0.00 41.09 2.52
501 502 3.365265 GTCGTGCCTGGGCCAAAG 61.365 66.667 8.04 2.77 41.09 2.77
502 503 3.429372 AAGTCGTGCCTGGGCCAAA 62.429 57.895 8.04 0.00 41.09 3.28
503 504 3.884774 AAGTCGTGCCTGGGCCAA 61.885 61.111 8.04 0.00 41.09 4.52
504 505 4.641645 CAAGTCGTGCCTGGGCCA 62.642 66.667 5.85 5.85 41.09 5.36
505 506 3.628646 ATCAAGTCGTGCCTGGGCC 62.629 63.158 9.28 0.00 41.09 5.80
506 507 0.392461 TAATCAAGTCGTGCCTGGGC 60.392 55.000 4.43 4.43 42.35 5.36
507 508 1.066143 ACTAATCAAGTCGTGCCTGGG 60.066 52.381 0.00 0.00 30.33 4.45
508 509 2.386661 ACTAATCAAGTCGTGCCTGG 57.613 50.000 0.00 0.00 30.33 4.45
509 510 5.220662 CCATTTACTAATCAAGTCGTGCCTG 60.221 44.000 0.00 0.00 39.80 4.85
510 511 4.876107 CCATTTACTAATCAAGTCGTGCCT 59.124 41.667 0.00 0.00 39.80 4.75
511 512 4.035208 CCCATTTACTAATCAAGTCGTGCC 59.965 45.833 0.00 0.00 39.80 5.01
512 513 4.495844 GCCCATTTACTAATCAAGTCGTGC 60.496 45.833 0.00 0.00 39.80 5.34
513 514 4.035208 GGCCCATTTACTAATCAAGTCGTG 59.965 45.833 0.00 0.00 39.80 4.35
514 515 4.196971 GGCCCATTTACTAATCAAGTCGT 58.803 43.478 0.00 0.00 39.80 4.34
515 516 3.247648 CGGCCCATTTACTAATCAAGTCG 59.752 47.826 0.00 0.00 39.80 4.18
516 517 3.564225 CCGGCCCATTTACTAATCAAGTC 59.436 47.826 0.00 0.00 39.80 3.01
517 518 3.551846 CCGGCCCATTTACTAATCAAGT 58.448 45.455 0.00 0.00 42.62 3.16
518 519 2.293399 GCCGGCCCATTTACTAATCAAG 59.707 50.000 18.11 0.00 0.00 3.02
519 520 2.303175 GCCGGCCCATTTACTAATCAA 58.697 47.619 18.11 0.00 0.00 2.57
520 521 1.477923 GGCCGGCCCATTTACTAATCA 60.478 52.381 36.64 0.00 0.00 2.57
521 522 1.202891 AGGCCGGCCCATTTACTAATC 60.203 52.381 41.72 12.41 36.58 1.75
522 523 0.850784 AGGCCGGCCCATTTACTAAT 59.149 50.000 41.72 16.98 36.58 1.73
523 524 0.106918 CAGGCCGGCCCATTTACTAA 60.107 55.000 41.72 0.00 36.58 2.24
524 525 0.983905 TCAGGCCGGCCCATTTACTA 60.984 55.000 41.72 15.30 36.58 1.82
525 526 1.645402 ATCAGGCCGGCCCATTTACT 61.645 55.000 41.72 19.56 36.58 2.24
526 527 1.152756 ATCAGGCCGGCCCATTTAC 60.153 57.895 41.72 15.73 36.58 2.01
527 528 1.152777 CATCAGGCCGGCCCATTTA 60.153 57.895 41.72 22.56 36.58 1.40
528 529 2.442643 CATCAGGCCGGCCCATTT 60.443 61.111 41.72 21.73 36.58 2.32
529 530 4.528039 CCATCAGGCCGGCCCATT 62.528 66.667 41.72 22.17 36.58 3.16
539 540 1.077787 TGCTAAACGGGCCATCAGG 60.078 57.895 4.39 0.00 38.23 3.86
540 541 2.098293 GTGCTAAACGGGCCATCAG 58.902 57.895 4.39 0.00 0.00 2.90
541 542 4.312052 GTGCTAAACGGGCCATCA 57.688 55.556 4.39 0.00 0.00 3.07
550 551 2.870372 CAGCCCAGCGTGCTAAAC 59.130 61.111 0.00 0.00 36.81 2.01
551 552 3.055719 GCAGCCCAGCGTGCTAAA 61.056 61.111 0.00 0.00 36.81 1.85
552 553 4.328025 TGCAGCCCAGCGTGCTAA 62.328 61.111 0.00 0.00 40.54 3.09
556 557 2.424705 AAAATGTGCAGCCCAGCGTG 62.425 55.000 0.00 0.00 37.31 5.34
557 558 2.146073 GAAAATGTGCAGCCCAGCGT 62.146 55.000 0.00 0.00 37.31 5.07
558 559 1.444895 GAAAATGTGCAGCCCAGCG 60.445 57.895 0.00 0.00 37.31 5.18
559 560 0.033781 TTGAAAATGTGCAGCCCAGC 59.966 50.000 0.00 0.00 0.00 4.85
560 561 1.606224 GGTTGAAAATGTGCAGCCCAG 60.606 52.381 0.00 0.00 30.17 4.45
561 562 0.392336 GGTTGAAAATGTGCAGCCCA 59.608 50.000 0.00 0.00 30.17 5.36
562 563 0.681175 AGGTTGAAAATGTGCAGCCC 59.319 50.000 0.00 0.00 36.20 5.19
563 564 1.069049 ACAGGTTGAAAATGTGCAGCC 59.931 47.619 0.00 0.00 35.85 4.85
564 565 2.514205 ACAGGTTGAAAATGTGCAGC 57.486 45.000 0.00 0.00 0.00 5.25
565 566 4.044336 TCAACAGGTTGAAAATGTGCAG 57.956 40.909 12.15 0.00 45.56 4.41
568 569 8.783637 AACCAGCTCAACAGGTTGAAAATGTG 62.784 42.308 15.03 8.42 45.73 3.21
569 570 6.852641 AACCAGCTCAACAGGTTGAAAATGT 61.853 40.000 15.03 8.26 45.73 2.71
570 571 4.441913 AACCAGCTCAACAGGTTGAAAATG 60.442 41.667 15.03 12.79 45.73 2.32
571 572 3.706086 AACCAGCTCAACAGGTTGAAAAT 59.294 39.130 15.03 2.72 45.73 1.82
572 573 3.096092 AACCAGCTCAACAGGTTGAAAA 58.904 40.909 15.03 0.00 45.73 2.29
573 574 2.733956 AACCAGCTCAACAGGTTGAAA 58.266 42.857 15.03 0.00 45.73 2.69
574 575 2.435372 AACCAGCTCAACAGGTTGAA 57.565 45.000 15.03 1.30 45.73 2.69
575 576 2.435372 AAACCAGCTCAACAGGTTGA 57.565 45.000 13.67 13.67 46.70 3.18
576 577 3.525268 AAAAACCAGCTCAACAGGTTG 57.475 42.857 6.20 5.81 46.70 3.77
654 655 5.701855 CATGGTACGACCCGTTTAATTTTT 58.298 37.500 0.00 0.00 41.54 1.94
655 656 4.379708 GCATGGTACGACCCGTTTAATTTT 60.380 41.667 0.00 0.00 41.54 1.82
656 657 3.127376 GCATGGTACGACCCGTTTAATTT 59.873 43.478 0.00 0.00 41.54 1.82
657 658 2.679336 GCATGGTACGACCCGTTTAATT 59.321 45.455 0.00 0.00 41.54 1.40
658 659 2.282407 GCATGGTACGACCCGTTTAAT 58.718 47.619 0.00 0.00 41.54 1.40
659 660 1.675415 GGCATGGTACGACCCGTTTAA 60.675 52.381 0.00 0.00 41.54 1.52
660 661 0.108233 GGCATGGTACGACCCGTTTA 60.108 55.000 0.00 0.00 41.54 2.01
661 662 1.376295 GGCATGGTACGACCCGTTT 60.376 57.895 0.00 0.00 41.54 3.60
662 663 2.266689 GGCATGGTACGACCCGTT 59.733 61.111 0.00 0.00 41.54 4.44
663 664 2.998480 TGGCATGGTACGACCCGT 60.998 61.111 0.00 0.00 44.35 5.28
664 665 2.202878 CTGGCATGGTACGACCCG 60.203 66.667 0.00 0.00 37.50 5.28
665 666 2.513897 GCTGGCATGGTACGACCC 60.514 66.667 0.00 0.00 37.50 4.46
666 667 2.513897 GGCTGGCATGGTACGACC 60.514 66.667 0.00 0.00 39.22 4.79
667 668 2.513897 GGGCTGGCATGGTACGAC 60.514 66.667 2.88 0.00 0.00 4.34
668 669 4.155733 CGGGCTGGCATGGTACGA 62.156 66.667 2.88 0.00 0.00 3.43
684 685 4.514577 CTGGAGCCTGGGTACGCG 62.515 72.222 3.53 3.53 0.00 6.01
685 686 4.162690 CCTGGAGCCTGGGTACGC 62.163 72.222 3.24 2.35 0.00 4.42
686 687 4.162690 GCCTGGAGCCTGGGTACG 62.163 72.222 13.48 0.00 35.85 3.67
733 734 3.186047 CTAAACGAGCCGTGCCCG 61.186 66.667 0.94 0.00 39.99 6.13
734 735 3.497031 GCTAAACGAGCCGTGCCC 61.497 66.667 0.94 0.00 46.41 5.36
742 743 0.999406 CACGACATGGGCTAAACGAG 59.001 55.000 0.00 0.00 0.00 4.18
743 744 1.017177 GCACGACATGGGCTAAACGA 61.017 55.000 0.00 0.00 0.00 3.85
744 745 1.423845 GCACGACATGGGCTAAACG 59.576 57.895 0.00 0.00 0.00 3.60
745 746 0.676782 AGGCACGACATGGGCTAAAC 60.677 55.000 0.00 0.00 38.25 2.01
746 747 0.676466 CAGGCACGACATGGGCTAAA 60.676 55.000 0.00 0.00 37.90 1.85
747 748 1.078497 CAGGCACGACATGGGCTAA 60.078 57.895 0.00 0.00 37.90 3.09
748 749 2.584064 CAGGCACGACATGGGCTA 59.416 61.111 0.00 0.00 37.90 3.93
749 750 4.415150 CCAGGCACGACATGGGCT 62.415 66.667 0.00 0.00 41.01 5.19
753 754 4.720902 TGGGCCAGGCACGACATG 62.721 66.667 15.19 0.00 32.76 3.21
754 755 3.731728 ATGGGCCAGGCACGACAT 61.732 61.111 15.19 8.97 32.76 3.06
755 756 4.720902 CATGGGCCAGGCACGACA 62.721 66.667 15.19 6.80 32.76 4.35
803 804 2.664402 ACTATAGCTGGCCAAATGGG 57.336 50.000 7.01 0.00 40.85 4.00
804 805 3.068590 CCAAACTATAGCTGGCCAAATGG 59.931 47.826 7.01 5.55 38.53 3.16
805 806 3.953612 TCCAAACTATAGCTGGCCAAATG 59.046 43.478 7.01 0.00 0.00 2.32
806 807 4.249638 TCCAAACTATAGCTGGCCAAAT 57.750 40.909 7.01 3.30 0.00 2.32
807 808 3.730215 TCCAAACTATAGCTGGCCAAA 57.270 42.857 7.01 0.00 0.00 3.28
808 809 3.352648 GTTCCAAACTATAGCTGGCCAA 58.647 45.455 7.01 0.00 0.00 4.52
809 810 2.679639 CGTTCCAAACTATAGCTGGCCA 60.680 50.000 4.71 4.71 0.00 5.36
810 811 1.940613 CGTTCCAAACTATAGCTGGCC 59.059 52.381 14.18 0.00 0.00 5.36
811 812 1.940613 CCGTTCCAAACTATAGCTGGC 59.059 52.381 14.18 3.80 0.00 4.85
812 813 2.169769 TCCCGTTCCAAACTATAGCTGG 59.830 50.000 13.18 13.18 0.00 4.85
813 814 3.132289 TCTCCCGTTCCAAACTATAGCTG 59.868 47.826 0.00 0.00 0.00 4.24
814 815 3.371965 TCTCCCGTTCCAAACTATAGCT 58.628 45.455 0.00 0.00 0.00 3.32
815 816 3.814005 TCTCCCGTTCCAAACTATAGC 57.186 47.619 0.00 0.00 0.00 2.97
816 817 6.260271 GGAAAATCTCCCGTTCCAAACTATAG 59.740 42.308 0.00 0.00 40.53 1.31
817 818 6.069847 AGGAAAATCTCCCGTTCCAAACTATA 60.070 38.462 4.60 0.00 46.81 1.31
818 819 4.948004 GGAAAATCTCCCGTTCCAAACTAT 59.052 41.667 0.00 0.00 40.53 2.12
819 820 4.042435 AGGAAAATCTCCCGTTCCAAACTA 59.958 41.667 4.60 0.00 46.81 2.24
820 821 3.154710 GGAAAATCTCCCGTTCCAAACT 58.845 45.455 0.00 0.00 40.53 2.66
1005 1028 0.182299 GCCATGGAAGGAAGAGGGAG 59.818 60.000 18.40 0.00 0.00 4.30
1036 1059 2.434359 CGGGAGAGGACAAACGGC 60.434 66.667 0.00 0.00 0.00 5.68
1104 1127 1.313772 CGTGATGAGACGAGGAGGAT 58.686 55.000 0.00 0.00 42.10 3.24
1151 1174 4.821935 TGAGACGGAGCTCACTGA 57.178 55.556 17.19 2.99 39.84 3.41
1170 1193 2.154798 CTCGGGCGAGGTCAGTTTGA 62.155 60.000 0.00 0.00 38.51 2.69
1220 1243 2.359975 GGGCAGTTCTTGGACGGG 60.360 66.667 0.00 0.00 0.00 5.28
1298 1321 2.685017 AGATGGACTGAGCCCGCA 60.685 61.111 0.00 0.00 0.00 5.69
1512 1535 2.362503 ACGGCGTCCTCCATGAGA 60.363 61.111 6.77 0.00 0.00 3.27
1615 1638 3.209812 CGCCGTCTCCATCTCCGA 61.210 66.667 0.00 0.00 0.00 4.55
1651 1674 2.444895 GGAGATGAGGAGGCCGGT 60.445 66.667 1.90 0.00 0.00 5.28
1797 1820 2.994995 TTGGCCGCGAAGGAGAGA 60.995 61.111 8.23 0.00 45.00 3.10
2150 2178 3.217017 CGGCCGCCTCTAGCAGTA 61.217 66.667 14.67 0.00 44.04 2.74
2299 2327 3.992260 ACATCGTAGCATCTGGTACTC 57.008 47.619 15.29 0.00 44.35 2.59
2395 2520 8.645110 AGGGAGATTATAAATCAAATTTGGCAG 58.355 33.333 17.90 0.00 33.82 4.85
2428 2555 9.319143 GTGAGAAATTGATGCTAGTACTGTAAT 57.681 33.333 5.39 0.00 0.00 1.89
2439 2566 6.178324 TCAGAATCAGTGAGAAATTGATGCT 58.822 36.000 0.00 0.00 40.68 3.79
2449 2576 4.259356 CTGGCATTTCAGAATCAGTGAGA 58.741 43.478 0.00 0.00 36.93 3.27
2450 2577 3.181499 GCTGGCATTTCAGAATCAGTGAG 60.181 47.826 0.00 0.00 36.93 3.51
2453 2580 2.753452 CAGCTGGCATTTCAGAATCAGT 59.247 45.455 5.57 0.00 36.93 3.41
2484 2611 3.486383 TCTTTGGGATTGTCAGGTTGTC 58.514 45.455 0.00 0.00 0.00 3.18
2547 2675 5.301045 CACATGGAGTGGCATATTCTGAAAT 59.699 40.000 0.00 0.00 44.69 2.17
2600 2728 3.056107 TGACCCCTTTAAGATCACTGACG 60.056 47.826 0.00 0.00 0.00 4.35
2613 2741 3.196254 GCATTTCATGATGTGACCCCTTT 59.804 43.478 10.96 0.00 36.32 3.11
2740 2868 3.490933 CGAATCTCCTAAGGTTCATCGCA 60.491 47.826 0.00 0.00 41.91 5.10
2857 2985 0.538287 AAGTCCCTTTGCTGCACCTC 60.538 55.000 0.00 0.00 0.00 3.85
3146 3275 4.359971 ACACCCGAGTTTGTTTTGTAAC 57.640 40.909 0.00 0.00 34.75 2.50
3162 3292 1.173913 CGATTTCCCCTTCAACACCC 58.826 55.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.