Multiple sequence alignment - TraesCS7A01G251700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G251700 chr7A 100.000 3779 0 0 1 3779 235472505 235476283 0.000000e+00 6979.0
1 TraesCS7A01G251700 chr7A 96.226 53 2 0 2560 2612 235475034 235475086 1.870000e-13 87.9
2 TraesCS7A01G251700 chr7A 96.226 53 2 0 2530 2582 235475064 235475116 1.870000e-13 87.9
3 TraesCS7A01G251700 chr7D 92.200 1577 72 18 619 2169 220989477 220991028 0.000000e+00 2183.0
4 TraesCS7A01G251700 chr7D 91.779 596 45 4 3183 3778 220993749 220994340 0.000000e+00 826.0
5 TraesCS7A01G251700 chr7D 95.197 458 16 1 2161 2612 220992262 220992719 0.000000e+00 719.0
6 TraesCS7A01G251700 chr7D 95.335 343 12 1 2530 2868 220992667 220993009 3.320000e-150 542.0
7 TraesCS7A01G251700 chr7D 93.007 286 10 7 2895 3180 220993073 220993348 3.510000e-110 409.0
8 TraesCS7A01G251700 chr7D 96.226 53 2 0 2530 2582 220992697 220992749 1.870000e-13 87.9
9 TraesCS7A01G251700 chr7B 89.411 1341 83 26 623 1935 175993380 175992071 0.000000e+00 1635.0
10 TraesCS7A01G251700 chr7B 94.354 797 35 5 2075 2868 175991908 175991119 0.000000e+00 1214.0
11 TraesCS7A01G251700 chr7B 90.436 596 53 4 3183 3778 175990097 175989506 0.000000e+00 782.0
12 TraesCS7A01G251700 chr7B 87.970 266 16 5 2895 3159 175991044 175990794 2.210000e-77 300.0
13 TraesCS7A01G251700 chr7B 94.340 53 3 0 2560 2612 175991458 175991406 8.700000e-12 82.4
14 TraesCS7A01G251700 chr2B 93.974 531 27 2 1 526 47247798 47247268 0.000000e+00 798.0
15 TraesCS7A01G251700 chr2B 89.385 179 19 0 1030 1208 624404382 624404204 3.800000e-55 226.0
16 TraesCS7A01G251700 chr2B 87.978 183 21 1 1344 1526 624403771 624403590 8.220000e-52 215.0
17 TraesCS7A01G251700 chr5D 93.173 542 26 5 1 537 136192378 136192913 0.000000e+00 785.0
18 TraesCS7A01G251700 chr5D 89.299 542 21 8 1 536 379273387 379272877 0.000000e+00 645.0
19 TraesCS7A01G251700 chr3B 93.524 525 29 2 7 526 323461132 323461656 0.000000e+00 776.0
20 TraesCS7A01G251700 chr3B 93.657 268 13 1 7 270 323460671 323460938 7.610000e-107 398.0
21 TraesCS7A01G251700 chr1B 92.655 531 32 3 1 526 311620578 311621106 0.000000e+00 758.0
22 TraesCS7A01G251700 chr4D 90.145 345 19 7 2 337 455350395 455350057 5.800000e-118 435.0
23 TraesCS7A01G251700 chr4D 92.754 138 9 1 393 529 455349739 455349602 8.280000e-47 198.0
24 TraesCS7A01G251700 chr3A 85.841 339 22 5 1 337 259320163 259320477 1.680000e-88 337.0
25 TraesCS7A01G251700 chr3A 85.503 338 23 5 1 337 259319125 259319437 2.810000e-86 329.0
26 TraesCS7A01G251700 chr3A 85.159 283 17 7 1 282 259323318 259323576 2.240000e-67 267.0
27 TraesCS7A01G251700 chr3A 90.256 195 14 4 335 526 259323933 259324125 2.250000e-62 250.0
28 TraesCS7A01G251700 chr3A 100.000 34 0 0 1042 1075 479481917 479481884 3.150000e-06 63.9
29 TraesCS7A01G251700 chr2A 89.773 176 18 0 1030 1205 672338954 672338779 3.800000e-55 226.0
30 TraesCS7A01G251700 chr6B 93.421 152 9 1 376 526 72329629 72329780 1.370000e-54 224.0
31 TraesCS7A01G251700 chr6B 92.500 40 2 1 1030 1069 574021454 574021416 5.270000e-04 56.5
32 TraesCS7A01G251700 chr2D 88.827 179 20 0 1030 1208 527308291 527308113 1.770000e-53 220.0
33 TraesCS7A01G251700 chr5B 93.939 132 7 1 375 505 245716788 245716919 8.280000e-47 198.0
34 TraesCS7A01G251700 chr3D 100.000 34 0 0 1042 1075 360048982 360048949 3.150000e-06 63.9
35 TraesCS7A01G251700 chr4B 92.683 41 3 0 1027 1067 413499465 413499505 4.080000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G251700 chr7A 235472505 235476283 3778 False 2384.933333 6979 97.484000 1 3779 3 chr7A.!!$F1 3778
1 TraesCS7A01G251700 chr7D 220989477 220994340 4863 False 794.483333 2183 93.957333 619 3778 6 chr7D.!!$F1 3159
2 TraesCS7A01G251700 chr7B 175989506 175993380 3874 True 802.680000 1635 91.302200 623 3778 5 chr7B.!!$R1 3155
3 TraesCS7A01G251700 chr2B 47247268 47247798 530 True 798.000000 798 93.974000 1 526 1 chr2B.!!$R1 525
4 TraesCS7A01G251700 chr2B 624403590 624404382 792 True 220.500000 226 88.681500 1030 1526 2 chr2B.!!$R2 496
5 TraesCS7A01G251700 chr5D 136192378 136192913 535 False 785.000000 785 93.173000 1 537 1 chr5D.!!$F1 536
6 TraesCS7A01G251700 chr5D 379272877 379273387 510 True 645.000000 645 89.299000 1 536 1 chr5D.!!$R1 535
7 TraesCS7A01G251700 chr3B 323460671 323461656 985 False 587.000000 776 93.590500 7 526 2 chr3B.!!$F1 519
8 TraesCS7A01G251700 chr1B 311620578 311621106 528 False 758.000000 758 92.655000 1 526 1 chr1B.!!$F1 525
9 TraesCS7A01G251700 chr4D 455349602 455350395 793 True 316.500000 435 91.449500 2 529 2 chr4D.!!$R1 527
10 TraesCS7A01G251700 chr3A 259319125 259324125 5000 False 295.750000 337 86.689750 1 526 4 chr3A.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 5531 0.027586 GGATCGTACCAATGTTGCGC 59.972 55.0 0.00 0.0 0.00 6.09 F
588 5555 0.039978 ACGTGTTCTGACAGAGAGCG 60.040 55.0 17.20 17.2 36.20 5.03 F
589 5556 0.238553 CGTGTTCTGACAGAGAGCGA 59.761 55.0 15.04 0.0 36.20 4.93 F
2029 7329 0.394565 ACTGACACTCTTCAGGTGGC 59.605 55.0 5.19 0.0 46.38 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 7063 0.527113 CATGTCGCCCAATTCAGCAA 59.473 50.000 0.00 0.0 0.00 3.91 R
2119 7475 0.613260 TGACTGGGTTCGAGAATGGG 59.387 55.000 0.00 0.0 0.00 4.00 R
2224 8824 1.003118 CGTCTGTTGGAAGGGGATCAA 59.997 52.381 0.00 0.0 0.00 2.57 R
3634 11024 0.178068 TCTTCTTAGACGGCATGGCC 59.822 55.000 14.46 0.0 46.75 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 2821 7.172868 TCATGAAAGTTGGCATAATGACATT 57.827 32.000 5.87 5.87 33.90 2.71
291 2835 5.728637 AATGACATTTGTTTCCTTCTCCC 57.271 39.130 0.00 0.00 0.00 4.30
306 2850 1.502039 TCTCCCCACCCACGACTATAT 59.498 52.381 0.00 0.00 0.00 0.86
365 5331 5.713792 TCTTCTCTTCCACACTACTTCAG 57.286 43.478 0.00 0.00 0.00 3.02
497 5464 7.645058 ATCAATCTATCAAAAATTGACGGGT 57.355 32.000 0.00 0.00 43.48 5.28
506 5473 4.858680 TTGACGGGTGCGGCAACA 62.859 61.111 21.07 5.75 0.00 3.33
530 5497 4.260334 CGCGCATTCATGATCTAGTCAAAA 60.260 41.667 8.75 0.00 40.97 2.44
531 5498 4.966366 GCGCATTCATGATCTAGTCAAAAC 59.034 41.667 0.30 0.00 40.97 2.43
532 5499 5.447683 GCGCATTCATGATCTAGTCAAAACA 60.448 40.000 0.30 0.00 40.97 2.83
534 5501 7.191551 CGCATTCATGATCTAGTCAAAACATT 58.808 34.615 0.00 0.00 40.97 2.71
535 5502 7.165318 CGCATTCATGATCTAGTCAAAACATTG 59.835 37.037 0.00 0.00 40.97 2.82
536 5503 7.972277 GCATTCATGATCTAGTCAAAACATTGT 59.028 33.333 0.00 0.00 40.97 2.71
539 5506 9.725019 TTCATGATCTAGTCAAAACATTGTACT 57.275 29.630 0.00 0.00 40.97 2.73
540 5507 9.371136 TCATGATCTAGTCAAAACATTGTACTC 57.629 33.333 0.00 0.00 40.97 2.59
541 5508 9.376075 CATGATCTAGTCAAAACATTGTACTCT 57.624 33.333 0.00 0.00 40.97 3.24
542 5509 8.763049 TGATCTAGTCAAAACATTGTACTCTG 57.237 34.615 0.00 0.00 32.78 3.35
543 5510 8.585018 TGATCTAGTCAAAACATTGTACTCTGA 58.415 33.333 0.00 0.00 32.78 3.27
544 5511 8.764524 ATCTAGTCAAAACATTGTACTCTGAC 57.235 34.615 10.29 10.29 33.51 3.51
545 5512 5.907197 AGTCAAAACATTGTACTCTGACG 57.093 39.130 11.58 0.00 37.40 4.35
546 5513 4.750098 AGTCAAAACATTGTACTCTGACGG 59.250 41.667 11.58 0.00 37.40 4.79
547 5514 4.748102 GTCAAAACATTGTACTCTGACGGA 59.252 41.667 0.00 0.00 0.00 4.69
548 5515 5.408604 GTCAAAACATTGTACTCTGACGGAT 59.591 40.000 0.00 0.00 0.00 4.18
549 5516 5.637810 TCAAAACATTGTACTCTGACGGATC 59.362 40.000 0.00 0.00 0.00 3.36
550 5517 3.422417 ACATTGTACTCTGACGGATCG 57.578 47.619 0.00 0.00 0.00 3.69
551 5518 2.753452 ACATTGTACTCTGACGGATCGT 59.247 45.455 0.00 0.00 45.10 3.73
552 5519 3.943381 ACATTGTACTCTGACGGATCGTA 59.057 43.478 0.00 0.00 41.37 3.43
553 5520 4.201891 ACATTGTACTCTGACGGATCGTAC 60.202 45.833 6.81 6.81 41.37 3.67
554 5521 2.283298 TGTACTCTGACGGATCGTACC 58.717 52.381 9.98 0.00 41.37 3.34
555 5522 2.283298 GTACTCTGACGGATCGTACCA 58.717 52.381 3.49 0.00 41.37 3.25
556 5523 1.830279 ACTCTGACGGATCGTACCAA 58.170 50.000 0.00 0.00 41.37 3.67
557 5524 2.376109 ACTCTGACGGATCGTACCAAT 58.624 47.619 0.00 0.00 41.37 3.16
558 5525 2.099263 ACTCTGACGGATCGTACCAATG 59.901 50.000 0.00 0.00 41.37 2.82
559 5526 2.097036 TCTGACGGATCGTACCAATGT 58.903 47.619 0.00 0.00 41.37 2.71
560 5527 2.494471 TCTGACGGATCGTACCAATGTT 59.506 45.455 0.00 0.00 41.37 2.71
561 5528 2.603110 CTGACGGATCGTACCAATGTTG 59.397 50.000 0.00 0.00 41.37 3.33
562 5529 1.326548 GACGGATCGTACCAATGTTGC 59.673 52.381 0.00 0.00 41.37 4.17
563 5530 0.300491 CGGATCGTACCAATGTTGCG 59.700 55.000 0.00 0.00 0.00 4.85
564 5531 0.027586 GGATCGTACCAATGTTGCGC 59.972 55.000 0.00 0.00 0.00 6.09
565 5532 1.006832 GATCGTACCAATGTTGCGCT 58.993 50.000 9.73 0.00 0.00 5.92
566 5533 1.396996 GATCGTACCAATGTTGCGCTT 59.603 47.619 9.73 0.00 0.00 4.68
567 5534 1.231221 TCGTACCAATGTTGCGCTTT 58.769 45.000 9.73 0.00 0.00 3.51
568 5535 1.604755 TCGTACCAATGTTGCGCTTTT 59.395 42.857 9.73 0.00 0.00 2.27
569 5536 2.806818 TCGTACCAATGTTGCGCTTTTA 59.193 40.909 9.73 0.00 0.00 1.52
570 5537 2.906161 CGTACCAATGTTGCGCTTTTAC 59.094 45.455 9.73 2.11 0.00 2.01
571 5538 2.044888 ACCAATGTTGCGCTTTTACG 57.955 45.000 9.73 0.00 0.00 3.18
572 5539 1.335496 ACCAATGTTGCGCTTTTACGT 59.665 42.857 9.73 0.00 34.88 3.57
573 5540 1.713404 CCAATGTTGCGCTTTTACGTG 59.287 47.619 9.73 4.37 34.88 4.49
574 5541 2.380660 CAATGTTGCGCTTTTACGTGT 58.619 42.857 9.73 0.00 34.88 4.49
575 5542 2.766970 ATGTTGCGCTTTTACGTGTT 57.233 40.000 9.73 0.00 34.88 3.32
576 5543 2.093972 TGTTGCGCTTTTACGTGTTC 57.906 45.000 9.73 0.00 34.88 3.18
577 5544 1.666700 TGTTGCGCTTTTACGTGTTCT 59.333 42.857 9.73 0.00 34.88 3.01
578 5545 2.034076 GTTGCGCTTTTACGTGTTCTG 58.966 47.619 9.73 0.00 34.88 3.02
579 5546 1.573026 TGCGCTTTTACGTGTTCTGA 58.427 45.000 9.73 0.00 34.88 3.27
580 5547 1.259507 TGCGCTTTTACGTGTTCTGAC 59.740 47.619 9.73 0.00 34.88 3.51
581 5548 1.259507 GCGCTTTTACGTGTTCTGACA 59.740 47.619 0.00 0.00 34.88 3.58
582 5549 2.659291 GCGCTTTTACGTGTTCTGACAG 60.659 50.000 0.00 0.00 36.20 3.51
583 5550 2.792674 CGCTTTTACGTGTTCTGACAGA 59.207 45.455 0.00 0.00 36.20 3.41
584 5551 3.121328 CGCTTTTACGTGTTCTGACAGAG 60.121 47.826 5.10 0.00 36.20 3.35
585 5552 4.049186 GCTTTTACGTGTTCTGACAGAGA 58.951 43.478 5.10 0.00 36.20 3.10
586 5553 4.149046 GCTTTTACGTGTTCTGACAGAGAG 59.851 45.833 5.10 1.69 36.20 3.20
587 5554 2.991434 TACGTGTTCTGACAGAGAGC 57.009 50.000 5.10 1.50 36.20 4.09
588 5555 0.039978 ACGTGTTCTGACAGAGAGCG 60.040 55.000 17.20 17.20 36.20 5.03
589 5556 0.238553 CGTGTTCTGACAGAGAGCGA 59.761 55.000 15.04 0.00 36.20 4.93
590 5557 1.335051 CGTGTTCTGACAGAGAGCGAA 60.335 52.381 15.04 0.00 36.20 4.70
591 5558 2.743938 GTGTTCTGACAGAGAGCGAAA 58.256 47.619 5.10 0.00 36.20 3.46
592 5559 3.321497 GTGTTCTGACAGAGAGCGAAAT 58.679 45.455 5.10 0.00 36.20 2.17
593 5560 3.743396 GTGTTCTGACAGAGAGCGAAATT 59.257 43.478 5.10 0.00 36.20 1.82
594 5561 3.990469 TGTTCTGACAGAGAGCGAAATTC 59.010 43.478 5.10 0.00 34.69 2.17
595 5562 3.238108 TCTGACAGAGAGCGAAATTCC 57.762 47.619 0.00 0.00 0.00 3.01
596 5563 2.828520 TCTGACAGAGAGCGAAATTCCT 59.171 45.455 0.00 0.00 0.00 3.36
597 5564 3.259374 TCTGACAGAGAGCGAAATTCCTT 59.741 43.478 0.00 0.00 0.00 3.36
598 5565 3.329386 TGACAGAGAGCGAAATTCCTTG 58.671 45.455 0.00 0.00 0.00 3.61
599 5566 2.675348 GACAGAGAGCGAAATTCCTTGG 59.325 50.000 0.00 0.00 0.00 3.61
600 5567 2.039084 ACAGAGAGCGAAATTCCTTGGT 59.961 45.455 0.00 0.00 0.00 3.67
601 5568 2.675348 CAGAGAGCGAAATTCCTTGGTC 59.325 50.000 0.00 0.00 0.00 4.02
602 5569 1.661112 GAGAGCGAAATTCCTTGGTCG 59.339 52.381 0.00 0.00 36.59 4.79
603 5570 1.275291 AGAGCGAAATTCCTTGGTCGA 59.725 47.619 0.00 0.00 35.54 4.20
604 5571 2.093447 AGAGCGAAATTCCTTGGTCGAT 60.093 45.455 0.00 0.00 35.54 3.59
605 5572 2.678336 GAGCGAAATTCCTTGGTCGATT 59.322 45.455 0.00 0.00 35.54 3.34
606 5573 3.081804 AGCGAAATTCCTTGGTCGATTT 58.918 40.909 0.00 1.44 35.54 2.17
607 5574 3.119849 AGCGAAATTCCTTGGTCGATTTG 60.120 43.478 0.00 0.00 35.54 2.32
608 5575 3.758300 CGAAATTCCTTGGTCGATTTGG 58.242 45.455 0.00 0.00 35.54 3.28
609 5576 3.438781 CGAAATTCCTTGGTCGATTTGGA 59.561 43.478 0.00 0.00 35.54 3.53
610 5577 4.083003 CGAAATTCCTTGGTCGATTTGGAA 60.083 41.667 12.24 12.24 40.49 3.53
611 5578 4.783764 AATTCCTTGGTCGATTTGGAAC 57.216 40.909 12.15 0.00 39.26 3.62
612 5579 2.194201 TCCTTGGTCGATTTGGAACC 57.806 50.000 0.00 0.00 0.00 3.62
613 5580 1.422024 TCCTTGGTCGATTTGGAACCA 59.578 47.619 0.00 0.00 0.00 3.67
614 5581 2.041081 TCCTTGGTCGATTTGGAACCAT 59.959 45.455 0.00 0.00 0.00 3.55
615 5582 2.164219 CCTTGGTCGATTTGGAACCATG 59.836 50.000 0.00 0.00 0.00 3.66
616 5583 2.869101 TGGTCGATTTGGAACCATGA 57.131 45.000 0.00 0.00 0.00 3.07
617 5584 3.364460 TGGTCGATTTGGAACCATGAT 57.636 42.857 0.00 0.00 0.00 2.45
622 5589 5.180117 GGTCGATTTGGAACCATGATGATAG 59.820 44.000 0.00 0.00 0.00 2.08
676 5643 2.271944 TCCAGACGAGAGAGTTGTGA 57.728 50.000 0.00 0.00 0.00 3.58
712 5679 3.697747 CGTCCCGTTGTGCCCCTA 61.698 66.667 0.00 0.00 0.00 3.53
721 5688 3.243907 CCGTTGTGCCCCTAAATTGAAAA 60.244 43.478 0.00 0.00 0.00 2.29
762 5729 1.434696 CGCCTGGTTTGGATGATGC 59.565 57.895 0.00 0.00 0.00 3.91
763 5730 1.033746 CGCCTGGTTTGGATGATGCT 61.034 55.000 0.00 0.00 0.00 3.79
786 5753 0.721718 CCCGCTCTCGCTTACAAAAG 59.278 55.000 0.00 0.00 35.68 2.27
860 5827 2.287584 TGTCCATTTCCATTCTCCCCT 58.712 47.619 0.00 0.00 0.00 4.79
871 5838 3.265791 CATTCTCCCCTTCTTCTGAACG 58.734 50.000 0.00 0.00 0.00 3.95
876 5843 1.493311 CCTTCTTCTGAACGCGCAC 59.507 57.895 5.73 0.00 0.00 5.34
878 5845 2.215478 CTTCTTCTGAACGCGCACGG 62.215 60.000 5.73 5.74 46.04 4.94
879 5846 4.430423 CTTCTGAACGCGCACGGC 62.430 66.667 5.73 0.00 46.04 5.68
927 5899 0.665298 GAAGCGGAATCCCATTGAGC 59.335 55.000 0.00 0.00 0.00 4.26
930 5903 2.546494 CGGAATCCCATTGAGCGCC 61.546 63.158 2.29 0.00 0.00 6.53
1507 6783 4.292178 CGCCTCGCCAGGATCCTC 62.292 72.222 12.69 0.00 43.65 3.71
1508 6784 3.934962 GCCTCGCCAGGATCCTCC 61.935 72.222 12.69 5.00 43.65 4.30
1787 7063 2.828877 TGATCGAACGACACCTGTTTT 58.171 42.857 0.00 0.00 0.00 2.43
1841 7128 2.743126 ACTCGTTGTTTTGGACGACAAA 59.257 40.909 6.06 6.06 46.82 2.83
1954 7253 5.230306 GTCATATCTTAGTCGTCTTGTGTGC 59.770 44.000 0.00 0.00 0.00 4.57
1978 7278 7.148474 TGCGTAGTGATCAAATTTTCTCCTAAC 60.148 37.037 0.00 0.00 0.00 2.34
2017 7317 4.558538 ACTTCATTGCTGAAACTGACAC 57.441 40.909 0.00 0.00 40.78 3.67
2029 7329 0.394565 ACTGACACTCTTCAGGTGGC 59.605 55.000 5.19 0.00 46.38 5.01
2051 7370 9.308318 GTGGCAAAAGTTTTAAGAGTTCAAATA 57.692 29.630 0.00 0.00 0.00 1.40
2052 7371 9.308318 TGGCAAAAGTTTTAAGAGTTCAAATAC 57.692 29.630 0.00 0.00 0.00 1.89
2091 7447 7.837202 ACAACATTTTCAATCCAGCATAATG 57.163 32.000 0.00 0.00 0.00 1.90
2224 8824 2.284699 AGTACCCCTGCTTCGGCT 60.285 61.111 0.00 0.00 42.37 5.52
2285 8891 3.882025 CGAGAGCAGCCAAGAACC 58.118 61.111 0.00 0.00 0.00 3.62
2456 9062 3.449227 CCTCTACGCCGCTGACCA 61.449 66.667 0.00 0.00 0.00 4.02
2658 9294 0.034380 TGGAGGAGGAAGTCGACGAT 60.034 55.000 10.46 2.88 0.00 3.73
2768 9404 4.162690 GCCTCCTTCGCCGTCCAT 62.163 66.667 0.00 0.00 0.00 3.41
2780 9416 0.249073 CCGTCCATTCGGCTGTAGAG 60.249 60.000 0.00 0.00 43.96 2.43
2797 9433 1.084289 GAGTGTTATTGACCCACGCC 58.916 55.000 0.00 0.00 34.34 5.68
2868 9509 1.605058 TTCGGGGTGCACTCTAGCTC 61.605 60.000 18.03 0.00 34.99 4.09
2869 9510 2.055042 CGGGGTGCACTCTAGCTCT 61.055 63.158 18.03 0.00 34.99 4.09
2871 9512 1.261238 GGGGTGCACTCTAGCTCTGT 61.261 60.000 18.03 0.00 34.99 3.41
2872 9513 0.610687 GGGTGCACTCTAGCTCTGTT 59.389 55.000 17.98 0.00 34.99 3.16
2873 9514 1.404851 GGGTGCACTCTAGCTCTGTTC 60.405 57.143 17.98 0.00 34.99 3.18
2875 9516 0.528017 TGCACTCTAGCTCTGTTCGG 59.472 55.000 0.00 0.00 34.99 4.30
2877 9518 1.202245 GCACTCTAGCTCTGTTCGGAG 60.202 57.143 0.00 4.45 36.50 4.63
2888 9549 4.377431 GCTCTGTTCGGAGTATGTTGTTTG 60.377 45.833 9.89 0.00 35.89 2.93
2889 9550 4.951254 TCTGTTCGGAGTATGTTGTTTGA 58.049 39.130 0.00 0.00 0.00 2.69
2904 9593 7.537596 TGTTGTTTGATTGTATCCAAGGAAT 57.462 32.000 0.00 0.00 33.17 3.01
2905 9594 8.642935 TGTTGTTTGATTGTATCCAAGGAATA 57.357 30.769 0.00 0.00 33.17 1.75
2930 9619 6.518493 TGTGTTACTGTAGTTTTAGGGACAG 58.482 40.000 0.00 0.00 43.97 3.51
2939 9628 4.974399 AGTTTTAGGGACAGGTCTTTCTG 58.026 43.478 0.00 0.00 40.40 3.02
2940 9629 4.658901 AGTTTTAGGGACAGGTCTTTCTGA 59.341 41.667 0.00 0.00 38.11 3.27
2941 9630 4.618920 TTTAGGGACAGGTCTTTCTGAC 57.381 45.455 0.00 0.00 44.63 3.51
3050 9739 0.950555 GTGACATCTCCTGTGCGCAA 60.951 55.000 14.00 1.19 38.54 4.85
3159 9863 6.469782 CCATTTGGCATACTTAAGATGGTT 57.530 37.500 10.09 0.00 0.00 3.67
3160 9864 6.877236 CCATTTGGCATACTTAAGATGGTTT 58.123 36.000 10.09 0.00 0.00 3.27
3161 9865 8.006298 CCATTTGGCATACTTAAGATGGTTTA 57.994 34.615 10.09 0.00 0.00 2.01
3162 9866 8.474025 CCATTTGGCATACTTAAGATGGTTTAA 58.526 33.333 10.09 0.00 0.00 1.52
3166 9870 8.815565 TGGCATACTTAAGATGGTTTAATTGA 57.184 30.769 10.09 0.00 0.00 2.57
3167 9871 9.420118 TGGCATACTTAAGATGGTTTAATTGAT 57.580 29.630 10.09 0.00 0.00 2.57
3168 9872 9.683069 GGCATACTTAAGATGGTTTAATTGATG 57.317 33.333 10.09 0.00 0.00 3.07
3181 9922 9.083422 TGGTTTAATTGATGATGGTAGTTTTCA 57.917 29.630 0.00 0.00 0.00 2.69
3285 10675 9.673454 AGAAATCCGTTTTAGAACAAAATACAC 57.327 29.630 0.00 0.00 35.44 2.90
3420 10810 7.516198 AGAAGTTGCATACAAGATTTGAAGT 57.484 32.000 0.00 0.00 36.16 3.01
3426 10816 6.602179 TGCATACAAGATTTGAAGTCTTTCG 58.398 36.000 0.00 0.00 33.82 3.46
3550 10940 2.831685 TTAAAGAGCCGCTTGAGTCA 57.168 45.000 0.00 0.00 36.80 3.41
3555 10945 2.281484 GCCGCTTGAGTCACCCAA 60.281 61.111 0.00 0.00 0.00 4.12
3572 10962 5.009631 CACCCAACCAAATAGATGAGAACA 58.990 41.667 0.00 0.00 0.00 3.18
3604 10994 1.221840 CGCACTATGGCCAAGGACT 59.778 57.895 10.96 0.00 0.00 3.85
3605 10995 1.091771 CGCACTATGGCCAAGGACTG 61.092 60.000 10.96 1.90 0.00 3.51
3608 10998 1.278985 CACTATGGCCAAGGACTGACA 59.721 52.381 10.96 0.00 0.00 3.58
3621 11011 0.966370 ACTGACAGGAGGCTACCGAC 60.966 60.000 7.51 0.00 34.73 4.79
3623 11013 0.622136 TGACAGGAGGCTACCGACTA 59.378 55.000 0.00 0.00 34.73 2.59
3631 11021 3.887716 GGAGGCTACCGACTAACTGATTA 59.112 47.826 0.00 0.00 0.00 1.75
3634 11024 5.844004 AGGCTACCGACTAACTGATTAATG 58.156 41.667 0.00 0.00 0.00 1.90
3684 11074 3.633525 AGCACAAAAGAGTGAAGCATGAA 59.366 39.130 0.00 0.00 42.05 2.57
3742 11132 1.838112 TCACCACCATCAAGATTGGC 58.162 50.000 1.59 0.00 31.76 4.52
3755 11145 0.953960 GATTGGCCGAGACAAACCGT 60.954 55.000 0.00 0.00 32.77 4.83
3769 11159 1.629043 AACCGTCAGACCTAGAGCAA 58.371 50.000 0.00 0.00 0.00 3.91
3778 11168 6.520272 GTCAGACCTAGAGCAAATGATATGT 58.480 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 477 1.393883 GATCGACGGCCAACTTCTTTC 59.606 52.381 2.24 0.00 0.00 2.62
22 478 1.270625 TGATCGACGGCCAACTTCTTT 60.271 47.619 2.24 0.00 0.00 2.52
258 2802 7.173047 GGAAACAAATGTCATTATGCCAACTTT 59.827 33.333 0.00 0.00 0.00 2.66
277 2821 0.481128 GGGTGGGGAGAAGGAAACAA 59.519 55.000 0.00 0.00 0.00 2.83
291 2835 3.757270 AGAGAGATATAGTCGTGGGTGG 58.243 50.000 0.00 0.00 0.00 4.61
332 3916 0.678048 AAGAGAAGATTGGGTGCGCC 60.678 55.000 8.12 8.12 0.00 6.53
365 5331 5.920840 GGAGAGAAATTTAACCAGTTTGCAC 59.079 40.000 0.00 0.00 0.00 4.57
412 5378 9.947433 TGAGAAATCATTTTTCATAAATTGGCT 57.053 25.926 0.00 0.00 0.00 4.75
506 5473 2.223805 TGACTAGATCATGAATGCGCGT 60.224 45.455 8.43 0.00 29.99 6.01
530 5497 2.753452 ACGATCCGTCAGAGTACAATGT 59.247 45.455 0.00 0.00 33.69 2.71
531 5498 3.422417 ACGATCCGTCAGAGTACAATG 57.578 47.619 0.00 0.00 33.69 2.82
532 5499 3.314635 GGTACGATCCGTCAGAGTACAAT 59.685 47.826 0.00 0.00 41.54 2.71
534 5501 2.283298 GGTACGATCCGTCAGAGTACA 58.717 52.381 0.00 0.00 41.54 2.90
535 5502 2.283298 TGGTACGATCCGTCAGAGTAC 58.717 52.381 0.00 0.00 41.54 2.73
536 5503 2.696989 TGGTACGATCCGTCAGAGTA 57.303 50.000 0.00 0.00 41.54 2.59
537 5504 1.830279 TTGGTACGATCCGTCAGAGT 58.170 50.000 0.00 0.00 41.54 3.24
538 5505 2.099263 ACATTGGTACGATCCGTCAGAG 59.901 50.000 0.00 0.00 41.54 3.35
539 5506 2.097036 ACATTGGTACGATCCGTCAGA 58.903 47.619 0.00 0.00 41.54 3.27
540 5507 2.579207 ACATTGGTACGATCCGTCAG 57.421 50.000 0.00 0.00 41.54 3.51
541 5508 2.612604 CAACATTGGTACGATCCGTCA 58.387 47.619 0.00 0.00 41.54 4.35
542 5509 1.326548 GCAACATTGGTACGATCCGTC 59.673 52.381 0.00 0.00 41.54 4.79
543 5510 1.365699 GCAACATTGGTACGATCCGT 58.634 50.000 0.00 0.00 44.35 4.69
544 5511 0.300491 CGCAACATTGGTACGATCCG 59.700 55.000 0.00 0.00 0.00 4.18
545 5512 0.027586 GCGCAACATTGGTACGATCC 59.972 55.000 0.30 0.00 0.00 3.36
546 5513 1.006832 AGCGCAACATTGGTACGATC 58.993 50.000 11.47 0.00 0.00 3.69
547 5514 1.448985 AAGCGCAACATTGGTACGAT 58.551 45.000 11.47 0.00 0.00 3.73
548 5515 1.231221 AAAGCGCAACATTGGTACGA 58.769 45.000 11.47 0.00 0.00 3.43
549 5516 2.044888 AAAAGCGCAACATTGGTACG 57.955 45.000 11.47 0.00 0.00 3.67
550 5517 2.906161 CGTAAAAGCGCAACATTGGTAC 59.094 45.455 11.47 1.05 0.00 3.34
551 5518 2.548904 ACGTAAAAGCGCAACATTGGTA 59.451 40.909 11.47 0.00 34.88 3.25
552 5519 1.335496 ACGTAAAAGCGCAACATTGGT 59.665 42.857 11.47 0.00 34.88 3.67
553 5520 1.713404 CACGTAAAAGCGCAACATTGG 59.287 47.619 11.47 0.00 34.88 3.16
554 5521 2.380660 ACACGTAAAAGCGCAACATTG 58.619 42.857 11.47 4.91 34.88 2.82
555 5522 2.766970 ACACGTAAAAGCGCAACATT 57.233 40.000 11.47 0.74 34.88 2.71
556 5523 2.289547 AGAACACGTAAAAGCGCAACAT 59.710 40.909 11.47 0.00 34.88 2.71
557 5524 1.666700 AGAACACGTAAAAGCGCAACA 59.333 42.857 11.47 0.00 34.88 3.33
558 5525 2.034076 CAGAACACGTAAAAGCGCAAC 58.966 47.619 11.47 0.62 34.88 4.17
559 5526 1.934525 TCAGAACACGTAAAAGCGCAA 59.065 42.857 11.47 0.00 34.88 4.85
560 5527 1.259507 GTCAGAACACGTAAAAGCGCA 59.740 47.619 11.47 0.00 34.88 6.09
561 5528 1.259507 TGTCAGAACACGTAAAAGCGC 59.740 47.619 0.00 0.00 34.88 5.92
562 5529 2.792674 TCTGTCAGAACACGTAAAAGCG 59.207 45.455 0.00 0.00 37.94 4.68
563 5530 4.049186 TCTCTGTCAGAACACGTAAAAGC 58.951 43.478 3.67 0.00 0.00 3.51
564 5531 4.149046 GCTCTCTGTCAGAACACGTAAAAG 59.851 45.833 3.67 0.00 0.00 2.27
565 5532 4.049186 GCTCTCTGTCAGAACACGTAAAA 58.951 43.478 3.67 0.00 0.00 1.52
566 5533 3.639538 GCTCTCTGTCAGAACACGTAAA 58.360 45.455 3.67 0.00 0.00 2.01
567 5534 2.350484 CGCTCTCTGTCAGAACACGTAA 60.350 50.000 3.67 0.00 0.00 3.18
568 5535 1.197036 CGCTCTCTGTCAGAACACGTA 59.803 52.381 3.67 0.00 0.00 3.57
569 5536 0.039978 CGCTCTCTGTCAGAACACGT 60.040 55.000 3.67 0.00 0.00 4.49
570 5537 0.238553 TCGCTCTCTGTCAGAACACG 59.761 55.000 3.67 7.71 0.00 4.49
571 5538 2.423926 TTCGCTCTCTGTCAGAACAC 57.576 50.000 3.67 0.00 0.00 3.32
572 5539 3.667497 ATTTCGCTCTCTGTCAGAACA 57.333 42.857 3.67 0.00 0.00 3.18
573 5540 3.369451 GGAATTTCGCTCTCTGTCAGAAC 59.631 47.826 3.67 0.00 0.00 3.01
574 5541 3.259374 AGGAATTTCGCTCTCTGTCAGAA 59.741 43.478 3.67 0.00 0.00 3.02
575 5542 2.828520 AGGAATTTCGCTCTCTGTCAGA 59.171 45.455 1.78 1.78 0.00 3.27
576 5543 3.244033 AGGAATTTCGCTCTCTGTCAG 57.756 47.619 0.00 0.00 0.00 3.51
577 5544 3.329386 CAAGGAATTTCGCTCTCTGTCA 58.671 45.455 0.00 0.00 0.00 3.58
578 5545 2.675348 CCAAGGAATTTCGCTCTCTGTC 59.325 50.000 0.00 0.00 0.00 3.51
579 5546 2.039084 ACCAAGGAATTTCGCTCTCTGT 59.961 45.455 0.00 0.00 0.00 3.41
580 5547 2.675348 GACCAAGGAATTTCGCTCTCTG 59.325 50.000 0.00 0.00 0.00 3.35
581 5548 2.675317 CGACCAAGGAATTTCGCTCTCT 60.675 50.000 0.00 0.00 0.00 3.10
582 5549 1.661112 CGACCAAGGAATTTCGCTCTC 59.339 52.381 0.00 0.00 0.00 3.20
583 5550 1.275291 TCGACCAAGGAATTTCGCTCT 59.725 47.619 0.00 0.00 0.00 4.09
584 5551 1.722011 TCGACCAAGGAATTTCGCTC 58.278 50.000 0.00 0.00 0.00 5.03
585 5552 2.403252 ATCGACCAAGGAATTTCGCT 57.597 45.000 0.00 0.00 0.00 4.93
586 5553 3.171277 CAAATCGACCAAGGAATTTCGC 58.829 45.455 0.00 0.00 0.00 4.70
587 5554 3.438781 TCCAAATCGACCAAGGAATTTCG 59.561 43.478 0.00 0.00 0.00 3.46
588 5555 5.161358 GTTCCAAATCGACCAAGGAATTTC 58.839 41.667 11.95 0.00 40.18 2.17
589 5556 4.021456 GGTTCCAAATCGACCAAGGAATTT 60.021 41.667 11.95 0.00 40.18 1.82
590 5557 3.509967 GGTTCCAAATCGACCAAGGAATT 59.490 43.478 11.95 0.00 40.18 2.17
591 5558 3.089284 GGTTCCAAATCGACCAAGGAAT 58.911 45.455 11.95 0.00 40.18 3.01
592 5559 2.158593 TGGTTCCAAATCGACCAAGGAA 60.159 45.455 6.41 6.41 40.31 3.36
593 5560 1.422024 TGGTTCCAAATCGACCAAGGA 59.578 47.619 0.00 0.00 40.31 3.36
594 5561 1.904287 TGGTTCCAAATCGACCAAGG 58.096 50.000 0.00 0.00 40.31 3.61
595 5562 3.081061 TCATGGTTCCAAATCGACCAAG 58.919 45.455 0.00 0.00 45.73 3.61
596 5563 3.147553 TCATGGTTCCAAATCGACCAA 57.852 42.857 0.00 0.00 45.73 3.67
597 5564 2.869101 TCATGGTTCCAAATCGACCA 57.131 45.000 0.00 0.00 46.57 4.02
598 5565 3.278574 TCATCATGGTTCCAAATCGACC 58.721 45.455 0.00 0.00 0.00 4.79
599 5566 5.180117 CCTATCATCATGGTTCCAAATCGAC 59.820 44.000 0.00 0.00 0.00 4.20
600 5567 5.308014 CCTATCATCATGGTTCCAAATCGA 58.692 41.667 0.00 0.00 0.00 3.59
601 5568 4.456911 CCCTATCATCATGGTTCCAAATCG 59.543 45.833 0.00 0.00 0.00 3.34
602 5569 5.634118 TCCCTATCATCATGGTTCCAAATC 58.366 41.667 0.00 0.00 0.00 2.17
603 5570 5.668135 TCCCTATCATCATGGTTCCAAAT 57.332 39.130 0.00 0.00 0.00 2.32
604 5571 5.668135 ATCCCTATCATCATGGTTCCAAA 57.332 39.130 0.00 0.00 0.00 3.28
605 5572 5.668135 AATCCCTATCATCATGGTTCCAA 57.332 39.130 0.00 0.00 0.00 3.53
606 5573 5.373555 AGAAATCCCTATCATCATGGTTCCA 59.626 40.000 0.00 0.00 0.00 3.53
607 5574 5.709164 CAGAAATCCCTATCATCATGGTTCC 59.291 44.000 0.00 0.00 0.00 3.62
608 5575 6.302269 ACAGAAATCCCTATCATCATGGTTC 58.698 40.000 0.00 0.00 0.00 3.62
609 5576 6.271585 ACAGAAATCCCTATCATCATGGTT 57.728 37.500 0.00 0.00 0.00 3.67
610 5577 5.919348 ACAGAAATCCCTATCATCATGGT 57.081 39.130 0.00 0.00 0.00 3.55
611 5578 6.774170 TCAAACAGAAATCCCTATCATCATGG 59.226 38.462 0.00 0.00 0.00 3.66
612 5579 7.812690 TCAAACAGAAATCCCTATCATCATG 57.187 36.000 0.00 0.00 0.00 3.07
613 5580 9.430399 AATTCAAACAGAAATCCCTATCATCAT 57.570 29.630 0.00 0.00 40.22 2.45
614 5581 8.827832 AATTCAAACAGAAATCCCTATCATCA 57.172 30.769 0.00 0.00 40.22 3.07
615 5582 9.525409 CAAATTCAAACAGAAATCCCTATCATC 57.475 33.333 0.00 0.00 40.22 2.92
616 5583 9.258629 TCAAATTCAAACAGAAATCCCTATCAT 57.741 29.630 0.00 0.00 40.22 2.45
617 5584 8.648698 TCAAATTCAAACAGAAATCCCTATCA 57.351 30.769 0.00 0.00 40.22 2.15
622 5589 8.382030 ACAAATCAAATTCAAACAGAAATCCC 57.618 30.769 0.00 0.00 40.22 3.85
676 5643 3.958860 AGCAACCGCCTCCTTGCT 61.959 61.111 0.00 0.00 46.63 3.91
709 5676 3.669557 CGGACGGCTGTTTTCAATTTAGG 60.670 47.826 0.00 0.00 0.00 2.69
712 5679 1.950909 TCGGACGGCTGTTTTCAATTT 59.049 42.857 0.00 0.00 0.00 1.82
721 5688 2.337749 GATCGTGATCGGACGGCTGT 62.338 60.000 0.00 0.00 39.88 4.40
744 5711 1.033746 AGCATCATCCAAACCAGGCG 61.034 55.000 0.00 0.00 0.00 5.52
746 5713 2.295885 GAGAGCATCATCCAAACCAGG 58.704 52.381 0.00 0.00 37.82 4.45
757 5724 2.042537 AGAGCGGGGAGAGCATCA 60.043 61.111 0.00 0.00 37.82 3.07
786 5753 2.370849 TGTAGGGAGAAGTGGGACAAAC 59.629 50.000 0.00 0.00 44.16 2.93
839 5806 2.861317 AGGGGAGAATGGAAATGGACAT 59.139 45.455 0.00 0.00 0.00 3.06
860 5827 2.307309 CCGTGCGCGTTCAGAAGAA 61.307 57.895 19.61 0.00 36.15 2.52
878 5845 4.778415 TGCTTCTCGCCGACTCGC 62.778 66.667 0.00 0.00 38.05 5.03
879 5846 2.126463 TTGCTTCTCGCCGACTCG 60.126 61.111 0.00 0.00 38.05 4.18
880 5847 1.347817 CTGTTGCTTCTCGCCGACTC 61.348 60.000 0.00 0.00 38.05 3.36
881 5848 1.373497 CTGTTGCTTCTCGCCGACT 60.373 57.895 0.00 0.00 38.05 4.18
882 5849 1.372997 TCTGTTGCTTCTCGCCGAC 60.373 57.895 0.00 0.00 38.05 4.79
883 5850 1.372997 GTCTGTTGCTTCTCGCCGA 60.373 57.895 0.00 0.00 38.05 5.54
913 5880 2.546494 CGGCGCTCAATGGGATTCC 61.546 63.158 7.64 0.00 0.00 3.01
986 5959 4.593864 GCATCGTCGCCCTCCTCC 62.594 72.222 0.00 0.00 0.00 4.30
1330 6443 1.751924 CCCCTTCACACGGAACAAAAA 59.248 47.619 0.00 0.00 0.00 1.94
1594 6870 2.430244 TTCGACGCCGCAGAAGAC 60.430 61.111 0.00 0.00 35.37 3.01
1787 7063 0.527113 CATGTCGCCCAATTCAGCAA 59.473 50.000 0.00 0.00 0.00 3.91
1841 7128 2.806608 TTAGAGTTGGCGTCGAACTT 57.193 45.000 0.00 1.44 33.71 2.66
1926 7223 8.561212 ACACAAGACGACTAAGATATGACTATC 58.439 37.037 0.00 0.00 35.00 2.08
1942 7239 0.664224 TCACTACGCACACAAGACGA 59.336 50.000 0.00 0.00 0.00 4.20
1954 7253 8.251750 TGTTAGGAGAAAATTTGATCACTACG 57.748 34.615 0.00 0.00 0.00 3.51
1978 7278 0.640768 GTTAGTAGCTGCGCTCGTTG 59.359 55.000 9.73 0.00 40.44 4.10
1991 7291 6.989759 TGTCAGTTTCAGCAATGAAGTTAGTA 59.010 34.615 0.00 0.00 0.00 1.82
2017 7317 4.391405 AAAACTTTTGCCACCTGAAGAG 57.609 40.909 0.00 0.00 0.00 2.85
2051 7370 6.463995 AATGTTGTTTTAGGATGTGTGTGT 57.536 33.333 0.00 0.00 0.00 3.72
2052 7371 7.490725 TGAAAATGTTGTTTTAGGATGTGTGTG 59.509 33.333 0.00 0.00 0.00 3.82
2119 7475 0.613260 TGACTGGGTTCGAGAATGGG 59.387 55.000 0.00 0.00 0.00 4.00
2224 8824 1.003118 CGTCTGTTGGAAGGGGATCAA 59.997 52.381 0.00 0.00 0.00 2.57
2285 8891 2.813908 GGTTAGCCGCGAGTGGTG 60.814 66.667 8.23 0.00 0.00 4.17
2319 8925 2.203029 GATTCGGCTCCGGGGAAC 60.203 66.667 4.80 0.00 40.25 3.62
2456 9062 1.893808 GGATCAACCATCGGCGCAT 60.894 57.895 10.83 0.00 38.79 4.73
2768 9404 4.491676 GTCAATAACACTCTACAGCCGAA 58.508 43.478 0.00 0.00 0.00 4.30
2780 9416 1.641123 CCGGCGTGGGTCAATAACAC 61.641 60.000 6.01 0.00 0.00 3.32
2868 9509 5.862924 ATCAAACAACATACTCCGAACAG 57.137 39.130 0.00 0.00 0.00 3.16
2869 9510 5.529430 ACAATCAAACAACATACTCCGAACA 59.471 36.000 0.00 0.00 0.00 3.18
2871 9512 7.065324 GGATACAATCAAACAACATACTCCGAA 59.935 37.037 0.00 0.00 0.00 4.30
2872 9513 6.537301 GGATACAATCAAACAACATACTCCGA 59.463 38.462 0.00 0.00 0.00 4.55
2873 9514 6.715464 GGATACAATCAAACAACATACTCCG 58.285 40.000 0.00 0.00 0.00 4.63
2904 9593 8.192743 TGTCCCTAAAACTACAGTAACACATA 57.807 34.615 0.00 0.00 0.00 2.29
2905 9594 7.069877 TGTCCCTAAAACTACAGTAACACAT 57.930 36.000 0.00 0.00 0.00 3.21
2930 9619 6.601224 ACCAGTCGGATTGTCAGAAAGACC 62.601 50.000 0.00 0.00 40.40 3.85
3098 9787 7.064134 CAGTTTTTATTGTCGAGTAGCCACATA 59.936 37.037 0.00 0.00 0.00 2.29
3101 9790 5.178809 ACAGTTTTTATTGTCGAGTAGCCAC 59.821 40.000 0.00 0.00 0.00 5.01
3263 10653 9.974980 AAATGTGTATTTTGTTCTAAAACGGAT 57.025 25.926 0.00 0.00 38.28 4.18
3403 10793 6.603095 ACGAAAGACTTCAAATCTTGTATGC 58.397 36.000 0.00 0.00 36.52 3.14
3408 10798 6.777526 AGAGACGAAAGACTTCAAATCTTG 57.222 37.500 0.00 0.00 36.52 3.02
3420 10810 5.968528 AAAGAAGAGCTAGAGACGAAAGA 57.031 39.130 0.00 0.00 0.00 2.52
3426 10816 4.153296 GGTGCAAAAAGAAGAGCTAGAGAC 59.847 45.833 0.00 0.00 0.00 3.36
3529 10919 3.437049 GTGACTCAAGCGGCTCTTTAAAT 59.563 43.478 1.45 0.00 31.27 1.40
3550 10940 5.255397 TGTTCTCATCTATTTGGTTGGGT 57.745 39.130 0.00 0.00 0.00 4.51
3555 10945 7.861629 TGGTCTTATGTTCTCATCTATTTGGT 58.138 34.615 0.00 0.00 35.70 3.67
3572 10962 4.816385 CCATAGTGCGTTCAATGGTCTTAT 59.184 41.667 0.00 0.00 35.23 1.73
3604 10994 0.622136 TAGTCGGTAGCCTCCTGTCA 59.378 55.000 0.00 0.00 0.00 3.58
3605 10995 1.404748 GTTAGTCGGTAGCCTCCTGTC 59.595 57.143 0.00 0.00 0.00 3.51
3608 10998 1.284198 TCAGTTAGTCGGTAGCCTCCT 59.716 52.381 0.00 0.00 0.00 3.69
3634 11024 0.178068 TCTTCTTAGACGGCATGGCC 59.822 55.000 14.46 0.00 46.75 5.36
3673 11063 3.821033 AGGTAGTGGTTTTCATGCTTCAC 59.179 43.478 0.00 0.00 0.00 3.18
3684 11074 4.245251 AGTTTGGTCAAGGTAGTGGTTT 57.755 40.909 0.00 0.00 0.00 3.27
3755 11145 6.737720 ACATATCATTTGCTCTAGGTCTGA 57.262 37.500 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.