Multiple sequence alignment - TraesCS7A01G250700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G250700 chr7A 100.000 5519 0 0 3834 9352 232755680 232750162 0.000000e+00 10192.0
1 TraesCS7A01G250700 chr7A 100.000 3542 0 0 1 3542 232759513 232755972 0.000000e+00 6541.0
2 TraesCS7A01G250700 chr7A 91.050 838 60 4 3834 4670 232754791 232753968 0.000000e+00 1118.0
3 TraesCS7A01G250700 chr7A 91.050 838 60 4 4723 5546 232755680 232754844 0.000000e+00 1118.0
4 TraesCS7A01G250700 chr7A 81.893 1099 153 20 4796 5854 435873299 435872207 0.000000e+00 885.0
5 TraesCS7A01G250700 chr7A 82.185 769 125 10 3907 4671 435873299 435872539 0.000000e+00 651.0
6 TraesCS7A01G250700 chr7A 77.819 807 125 28 3907 4670 289605809 289605014 5.150000e-122 449.0
7 TraesCS7A01G250700 chr7A 84.211 152 19 1 1 147 466434435 466434284 9.790000e-30 143.0
8 TraesCS7A01G250700 chr7A 77.358 265 41 15 244 498 79818588 79818333 1.270000e-28 139.0
9 TraesCS7A01G250700 chr7A 78.325 203 33 9 252 451 259988198 259988004 4.590000e-23 121.0
10 TraesCS7A01G250700 chr7A 90.541 74 7 0 3847 3920 709421783 709421710 2.150000e-16 99.0
11 TraesCS7A01G250700 chr7A 84.043 94 10 3 5894 5985 677942013 677942103 1.670000e-12 86.1
12 TraesCS7A01G250700 chr7A 92.453 53 4 0 3865 3917 567677639 567677587 1.010000e-09 76.8
13 TraesCS7A01G250700 chr7A 93.878 49 3 0 3867 3915 608736513 608736561 3.620000e-09 75.0
14 TraesCS7A01G250700 chr7A 88.462 52 6 0 3865 3916 68768696 68768747 7.840000e-06 63.9
15 TraesCS7A01G250700 chr7A 100.000 31 0 0 3861 3891 227393033 227393063 3.650000e-04 58.4
16 TraesCS7A01G250700 chr7A 100.000 30 0 0 6097 6126 25104930 25104901 1.000000e-03 56.5
17 TraesCS7A01G250700 chr7A 100.000 30 0 0 3888 3917 159421750 159421721 1.000000e-03 56.5
18 TraesCS7A01G250700 chr7B 95.564 2660 91 9 6122 8772 178402772 178405413 0.000000e+00 4233.0
19 TraesCS7A01G250700 chr7B 94.710 2741 104 19 827 3542 178399678 178402402 0.000000e+00 4220.0
20 TraesCS7A01G250700 chr7B 88.729 834 71 16 1 823 178391430 178392251 0.000000e+00 998.0
21 TraesCS7A01G250700 chr7B 94.553 459 21 2 8785 9239 178405559 178406017 0.000000e+00 706.0
22 TraesCS7A01G250700 chr7B 77.228 202 31 8 5893 6091 692319321 692319132 4.620000e-18 104.0
23 TraesCS7A01G250700 chr7B 88.750 80 7 2 382 459 648096512 648096433 7.730000e-16 97.1
24 TraesCS7A01G250700 chr7B 83.333 90 15 0 5874 5963 226829995 226829906 6.020000e-12 84.2
25 TraesCS7A01G250700 chr7B 97.059 34 1 0 3321 3354 661839469 661839502 3.650000e-04 58.4
26 TraesCS7A01G250700 chr7D 94.181 2681 103 20 6122 8772 220518443 220515786 0.000000e+00 4037.0
27 TraesCS7A01G250700 chr7D 94.723 2255 97 11 817 3054 220521314 220519065 0.000000e+00 3485.0
28 TraesCS7A01G250700 chr7D 95.238 567 27 0 8785 9351 220515627 220515061 0.000000e+00 898.0
29 TraesCS7A01G250700 chr7D 88.757 507 31 7 339 829 220521881 220521385 1.740000e-166 597.0
30 TraesCS7A01G250700 chr7D 89.067 375 33 5 3162 3529 220518905 220518532 8.560000e-125 459.0
31 TraesCS7A01G250700 chr7D 92.203 295 22 1 1 294 220522175 220521881 5.220000e-112 416.0
32 TraesCS7A01G250700 chr7D 95.294 170 7 1 2962 3130 220519073 220518904 1.550000e-67 268.0
33 TraesCS7A01G250700 chr7D 76.875 320 48 20 244 548 75890884 75890576 3.500000e-34 158.0
34 TraesCS7A01G250700 chr7D 98.837 86 1 0 1 86 259149573 259149488 4.520000e-33 154.0
35 TraesCS7A01G250700 chr7D 80.864 162 30 1 87 247 340465516 340465355 9.860000e-25 126.0
36 TraesCS7A01G250700 chr7D 100.000 30 0 0 3321 3350 34304570 34304599 1.000000e-03 56.5
37 TraesCS7A01G250700 chr5B 81.518 1001 137 30 4894 5857 419766491 419765502 0.000000e+00 780.0
38 TraesCS7A01G250700 chr5B 77.869 244 46 7 245 483 649005994 649005754 2.720000e-30 145.0
39 TraesCS7A01G250700 chr5B 79.263 217 31 8 5652 5857 83066110 83066323 1.270000e-28 139.0
40 TraesCS7A01G250700 chr5B 76.585 205 34 7 5359 5563 505094367 505094557 5.980000e-17 100.0
41 TraesCS7A01G250700 chr2B 79.857 1117 154 33 4796 5852 158638218 158639323 0.000000e+00 750.0
42 TraesCS7A01G250700 chr2B 85.350 157 20 3 86 240 404458597 404458752 9.720000e-35 159.0
43 TraesCS7A01G250700 chr2B 76.829 328 44 16 5333 5629 377541280 377540954 1.260000e-33 156.0
44 TraesCS7A01G250700 chr2B 96.667 90 3 0 1 90 321783993 321784082 5.850000e-32 150.0
45 TraesCS7A01G250700 chr2B 96.667 90 3 0 1 90 601073255 601073344 5.850000e-32 150.0
46 TraesCS7A01G250700 chr2B 79.661 177 34 2 4752 4927 469346784 469346609 9.860000e-25 126.0
47 TraesCS7A01G250700 chr2B 81.203 133 17 5 6006 6131 170851350 170851481 5.980000e-17 100.0
48 TraesCS7A01G250700 chr2B 90.769 65 6 0 5499 5563 517155997 517155933 4.650000e-13 87.9
49 TraesCS7A01G250700 chr4B 80.409 1077 127 40 4803 5842 643760005 643761034 0.000000e+00 743.0
50 TraesCS7A01G250700 chr4B 80.310 1031 124 28 4878 5857 379088600 379087598 0.000000e+00 706.0
51 TraesCS7A01G250700 chr4B 81.612 707 107 12 4871 5563 428028343 428029040 1.760000e-156 564.0
52 TraesCS7A01G250700 chr4B 82.292 96 15 2 5874 5968 181569105 181569011 2.160000e-11 82.4
53 TraesCS7A01G250700 chr3B 83.355 763 105 10 3914 4670 499450052 499449306 0.000000e+00 686.0
54 TraesCS7A01G250700 chr3B 79.073 669 102 23 4006 4670 475498508 475499142 8.680000e-115 425.0
55 TraesCS7A01G250700 chr3B 88.353 249 29 0 5620 5868 421919990 421920238 5.490000e-77 300.0
56 TraesCS7A01G250700 chr3B 77.302 467 81 14 4754 5216 421919149 421919594 1.560000e-62 252.0
57 TraesCS7A01G250700 chr3B 82.927 164 28 0 4749 4912 694292339 694292502 2.100000e-31 148.0
58 TraesCS7A01G250700 chr3B 86.154 130 16 2 3907 4035 793460602 793460474 1.270000e-28 139.0
59 TraesCS7A01G250700 chr3B 85.385 130 17 2 3907 4035 792283649 792283777 5.890000e-27 134.0
60 TraesCS7A01G250700 chr3B 79.888 179 31 4 4751 4927 773140656 773140831 9.860000e-25 126.0
61 TraesCS7A01G250700 chr3B 85.556 90 12 1 4821 4910 332144811 332144723 1.000000e-14 93.5
62 TraesCS7A01G250700 chr6B 78.364 1137 159 36 4796 5857 554686207 554687331 0.000000e+00 656.0
63 TraesCS7A01G250700 chr6B 78.095 105 17 3 5871 5974 623176835 623176736 2.820000e-05 62.1
64 TraesCS7A01G250700 chr6B 92.308 39 1 2 3312 3348 133693344 133693382 5.000000e-03 54.7
65 TraesCS7A01G250700 chr6B 100.000 28 0 0 6097 6124 710350575 710350602 1.700000e-02 52.8
66 TraesCS7A01G250700 chr2D 79.566 1013 126 34 4897 5848 491945222 491946214 0.000000e+00 649.0
67 TraesCS7A01G250700 chr2D 77.113 1136 134 55 4796 5856 638357945 638359029 8.260000e-150 542.0
68 TraesCS7A01G250700 chr2D 88.048 251 30 0 5620 5870 19591441 19591191 1.970000e-76 298.0
69 TraesCS7A01G250700 chr2D 80.247 162 18 7 5927 6087 215849976 215850124 9.930000e-20 110.0
70 TraesCS7A01G250700 chr2D 100.000 31 0 0 3320 3350 648452940 648452970 3.650000e-04 58.4
71 TraesCS7A01G250700 chr2D 100.000 29 0 0 3321 3349 640774339 640774367 5.000000e-03 54.7
72 TraesCS7A01G250700 chr2D 100.000 28 0 0 6100 6127 387126049 387126076 1.700000e-02 52.8
73 TraesCS7A01G250700 chr6D 81.551 748 128 9 3926 4668 333001700 333000958 8.030000e-170 608.0
74 TraesCS7A01G250700 chr6D 90.041 241 20 2 5620 5857 42045857 42046096 9.120000e-80 309.0
75 TraesCS7A01G250700 chr6D 84.516 155 19 4 89 240 219156551 219156703 2.100000e-31 148.0
76 TraesCS7A01G250700 chr6D 85.882 85 12 0 6004 6088 373924500 373924584 3.600000e-14 91.6
77 TraesCS7A01G250700 chr4D 80.774 775 127 16 3908 4670 9478063 9477299 3.760000e-163 586.0
78 TraesCS7A01G250700 chr4D 77.358 954 156 32 4940 5870 302397281 302396365 2.330000e-140 510.0
79 TraesCS7A01G250700 chr4D 83.824 136 21 1 89 223 279185446 279185311 2.740000e-25 128.0
80 TraesCS7A01G250700 chr4D 81.081 148 20 4 5944 6091 9476704 9476565 2.760000e-20 111.0
81 TraesCS7A01G250700 chr4D 100.000 29 0 0 3392 3420 399614156 399614128 5.000000e-03 54.7
82 TraesCS7A01G250700 chr6A 82.456 684 98 13 4896 5563 509566763 509567440 6.300000e-161 579.0
83 TraesCS7A01G250700 chr6A 89.535 86 9 0 6006 6091 563501891 563501806 9.930000e-20 110.0
84 TraesCS7A01G250700 chr6A 96.970 33 1 0 3318 3350 160366977 160367009 1.000000e-03 56.5
85 TraesCS7A01G250700 chr6A 96.970 33 1 0 6096 6128 602671598 602671630 1.000000e-03 56.5
86 TraesCS7A01G250700 chr1B 79.518 830 130 23 3868 4667 489576997 489577816 1.060000e-153 555.0
87 TraesCS7A01G250700 chr1B 80.481 707 116 11 4874 5563 489577135 489577836 1.080000e-143 521.0
88 TraesCS7A01G250700 chr1B 88.525 61 0 6 3296 3351 390427034 390427092 6.060000e-07 67.6
89 TraesCS7A01G250700 chr1B 96.875 32 1 0 6093 6124 413201339 413201370 5.000000e-03 54.7
90 TraesCS7A01G250700 chr5A 76.398 1127 146 44 4796 5857 540288319 540287248 1.810000e-136 497.0
91 TraesCS7A01G250700 chr5A 80.336 595 108 7 4075 4665 491752023 491752612 8.620000e-120 442.0
92 TraesCS7A01G250700 chr5A 76.494 251 43 9 5314 5563 352860867 352860632 1.280000e-23 122.0
93 TraesCS7A01G250700 chr5A 78.528 163 31 3 5927 6089 540286971 540286813 4.620000e-18 104.0
94 TraesCS7A01G250700 chr5A 75.217 230 43 5 5334 5563 193630113 193630328 7.730000e-16 97.1
95 TraesCS7A01G250700 chr5A 76.875 160 28 8 87 241 241836391 241836236 2.160000e-11 82.4
96 TraesCS7A01G250700 chr5A 97.222 36 1 0 3321 3356 237548454 237548489 2.820000e-05 62.1
97 TraesCS7A01G250700 chr5A 77.477 111 18 3 6024 6127 509721858 509721968 1.010000e-04 60.2
98 TraesCS7A01G250700 chr5A 91.111 45 2 2 5871 5915 669623071 669623113 1.010000e-04 60.2
99 TraesCS7A01G250700 chr3D 79.356 683 105 19 3989 4668 365124809 365125458 1.850000e-121 448.0
100 TraesCS7A01G250700 chr3D 78.155 206 23 14 5928 6124 94034544 94034736 2.760000e-20 111.0
101 TraesCS7A01G250700 chr3D 79.487 156 19 9 5927 6082 281910370 281910228 2.150000e-16 99.0
102 TraesCS7A01G250700 chr3D 83.721 86 10 3 5899 5981 401741516 401741432 2.800000e-10 78.7
103 TraesCS7A01G250700 chr3D 97.059 34 1 0 3317 3350 336539526 336539559 3.650000e-04 58.4
104 TraesCS7A01G250700 chr3D 100.000 29 0 0 6096 6124 406411807 406411835 5.000000e-03 54.7
105 TraesCS7A01G250700 chr5D 81.321 530 87 8 4148 4670 388066419 388065895 4.040000e-113 420.0
106 TraesCS7A01G250700 chr5D 78.626 655 93 25 5248 5858 426008896 426008245 3.170000e-104 390.0
107 TraesCS7A01G250700 chr5D 88.235 153 16 2 89 240 63772408 63772257 2.070000e-41 182.0
108 TraesCS7A01G250700 chr5D 98.824 85 1 0 1 85 67165256 67165172 1.630000e-32 152.0
109 TraesCS7A01G250700 chr5D 90.000 70 5 2 4602 4670 435535333 435535265 1.290000e-13 89.8
110 TraesCS7A01G250700 chr5D 82.828 99 9 4 5874 5968 99039029 99038935 2.160000e-11 82.4
111 TraesCS7A01G250700 chr5D 94.737 38 2 0 3317 3354 424213606 424213643 1.010000e-04 60.2
112 TraesCS7A01G250700 chr3A 75.463 864 150 32 3865 4670 728937639 728938498 1.920000e-96 364.0
113 TraesCS7A01G250700 chr3A 87.500 192 24 0 3907 4098 13194710 13194901 1.220000e-53 222.0
114 TraesCS7A01G250700 chr3A 86.458 192 26 0 4796 4987 13194710 13194901 2.650000e-50 211.0
115 TraesCS7A01G250700 chr3A 82.778 180 23 5 3863 4038 674767066 674767241 4.520000e-33 154.0
116 TraesCS7A01G250700 chr3A 87.879 132 15 1 3907 4038 731791726 731791856 4.520000e-33 154.0
117 TraesCS7A01G250700 chr3A 75.000 304 34 24 3865 4127 168828518 168828820 1.660000e-17 102.0
118 TraesCS7A01G250700 chr3A 98.182 55 1 0 3862 3916 426869876 426869822 7.730000e-16 97.1
119 TraesCS7A01G250700 chr3A 100.000 34 0 0 3317 3350 453820896 453820929 7.840000e-06 63.9
120 TraesCS7A01G250700 chr3A 97.222 36 1 0 3321 3356 529213133 529213098 2.820000e-05 62.1
121 TraesCS7A01G250700 chr1A 79.151 259 48 6 244 498 484294448 484294192 3.470000e-39 174.0
122 TraesCS7A01G250700 chr1A 91.429 70 4 2 4602 4670 127506463 127506395 2.780000e-15 95.3
123 TraesCS7A01G250700 chr2A 98.837 86 1 0 1 86 135561934 135561849 4.520000e-33 154.0
124 TraesCS7A01G250700 chr2A 90.909 88 8 0 6007 6094 719806011 719805924 1.650000e-22 119.0
125 TraesCS7A01G250700 chr2A 76.098 205 35 7 5359 5563 234971693 234971883 2.780000e-15 95.3
126 TraesCS7A01G250700 chr2A 83.333 102 16 1 4569 4670 12714235 12714335 1.000000e-14 93.5
127 TraesCS7A01G250700 chr2A 93.103 58 4 0 5573 5630 222607665 222607608 1.670000e-12 86.1
128 TraesCS7A01G250700 chr2A 92.593 54 3 1 4624 4677 493156969 493156917 1.010000e-09 76.8
129 TraesCS7A01G250700 chr1D 98.837 86 1 0 1 86 301910813 301910728 4.520000e-33 154.0
130 TraesCS7A01G250700 chr1D 81.765 170 23 3 3322 3485 387898819 387898986 1.640000e-27 135.0
131 TraesCS7A01G250700 chr1D 88.372 86 10 0 6006 6091 355127013 355126928 4.620000e-18 104.0
132 TraesCS7A01G250700 chr1D 85.263 95 14 0 5874 5968 203009221 203009127 2.150000e-16 99.0
133 TraesCS7A01G250700 chr1D 79.470 151 21 7 5984 6127 225001969 225002116 2.150000e-16 99.0
134 TraesCS7A01G250700 chr1D 78.523 149 29 2 402 548 31924646 31924499 2.780000e-15 95.3
135 TraesCS7A01G250700 chr1D 84.211 95 15 0 5874 5968 189438002 189437908 1.000000e-14 93.5
136 TraesCS7A01G250700 chr1D 90.769 65 5 1 4613 4677 284359027 284359090 1.670000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G250700 chr7A 232750162 232759513 9351 True 4742.250000 10192 95.525000 1 9352 4 chr7A.!!$R9 9351
1 TraesCS7A01G250700 chr7A 435872207 435873299 1092 True 768.000000 885 82.039000 3907 5854 2 chr7A.!!$R10 1947
2 TraesCS7A01G250700 chr7A 289605014 289605809 795 True 449.000000 449 77.819000 3907 4670 1 chr7A.!!$R5 763
3 TraesCS7A01G250700 chr7B 178399678 178406017 6339 False 3053.000000 4233 94.942333 827 9239 3 chr7B.!!$F3 8412
4 TraesCS7A01G250700 chr7B 178391430 178392251 821 False 998.000000 998 88.729000 1 823 1 chr7B.!!$F1 822
5 TraesCS7A01G250700 chr7D 220515061 220522175 7114 True 1451.428571 4037 92.780429 1 9351 7 chr7D.!!$R4 9350
6 TraesCS7A01G250700 chr5B 419765502 419766491 989 True 780.000000 780 81.518000 4894 5857 1 chr5B.!!$R1 963
7 TraesCS7A01G250700 chr2B 158638218 158639323 1105 False 750.000000 750 79.857000 4796 5852 1 chr2B.!!$F1 1056
8 TraesCS7A01G250700 chr4B 643760005 643761034 1029 False 743.000000 743 80.409000 4803 5842 1 chr4B.!!$F2 1039
9 TraesCS7A01G250700 chr4B 379087598 379088600 1002 True 706.000000 706 80.310000 4878 5857 1 chr4B.!!$R2 979
10 TraesCS7A01G250700 chr4B 428028343 428029040 697 False 564.000000 564 81.612000 4871 5563 1 chr4B.!!$F1 692
11 TraesCS7A01G250700 chr3B 499449306 499450052 746 True 686.000000 686 83.355000 3914 4670 1 chr3B.!!$R2 756
12 TraesCS7A01G250700 chr3B 475498508 475499142 634 False 425.000000 425 79.073000 4006 4670 1 chr3B.!!$F1 664
13 TraesCS7A01G250700 chr3B 421919149 421920238 1089 False 276.000000 300 82.827500 4754 5868 2 chr3B.!!$F5 1114
14 TraesCS7A01G250700 chr6B 554686207 554687331 1124 False 656.000000 656 78.364000 4796 5857 1 chr6B.!!$F2 1061
15 TraesCS7A01G250700 chr2D 491945222 491946214 992 False 649.000000 649 79.566000 4897 5848 1 chr2D.!!$F3 951
16 TraesCS7A01G250700 chr2D 638357945 638359029 1084 False 542.000000 542 77.113000 4796 5856 1 chr2D.!!$F4 1060
17 TraesCS7A01G250700 chr6D 333000958 333001700 742 True 608.000000 608 81.551000 3926 4668 1 chr6D.!!$R1 742
18 TraesCS7A01G250700 chr4D 302396365 302397281 916 True 510.000000 510 77.358000 4940 5870 1 chr4D.!!$R2 930
19 TraesCS7A01G250700 chr4D 9476565 9478063 1498 True 348.500000 586 80.927500 3908 6091 2 chr4D.!!$R4 2183
20 TraesCS7A01G250700 chr6A 509566763 509567440 677 False 579.000000 579 82.456000 4896 5563 1 chr6A.!!$F2 667
21 TraesCS7A01G250700 chr1B 489576997 489577836 839 False 538.000000 555 79.999500 3868 5563 2 chr1B.!!$F3 1695
22 TraesCS7A01G250700 chr5A 491752023 491752612 589 False 442.000000 442 80.336000 4075 4665 1 chr5A.!!$F3 590
23 TraesCS7A01G250700 chr5A 540286813 540288319 1506 True 300.500000 497 77.463000 4796 6089 2 chr5A.!!$R3 1293
24 TraesCS7A01G250700 chr3D 365124809 365125458 649 False 448.000000 448 79.356000 3989 4668 1 chr3D.!!$F3 679
25 TraesCS7A01G250700 chr5D 388065895 388066419 524 True 420.000000 420 81.321000 4148 4670 1 chr5D.!!$R4 522
26 TraesCS7A01G250700 chr5D 426008245 426008896 651 True 390.000000 390 78.626000 5248 5858 1 chr5D.!!$R5 610
27 TraesCS7A01G250700 chr3A 728937639 728938498 859 False 364.000000 364 75.463000 3865 4670 1 chr3A.!!$F4 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 384 0.109179 GCTTGCATGAATGTCGCCAA 60.109 50.0 3.33 0.0 0.00 4.52 F
498 504 0.172803 GTGTACGCGAACTGATCCCT 59.827 55.0 15.93 0.0 0.00 4.20 F
2057 2171 0.396435 AGTGACGACTTGCCAATCCA 59.604 50.0 0.00 0.0 0.00 3.41 F
2058 2172 0.517316 GTGACGACTTGCCAATCCAC 59.483 55.0 0.00 0.0 0.00 4.02 F
2354 2468 0.962356 CAGCAAGGGAGGCGTTCAAT 60.962 55.0 0.00 0.0 36.08 2.57 F
4169 4417 0.030101 CTTCGCCTTCTCTAGCTCCG 59.970 60.0 0.00 0.0 0.00 4.63 F
4441 4689 0.037877 TCTTCCTCCTCGTCGGTCTT 59.962 55.0 0.00 0.0 0.00 3.01 F
4664 4912 0.040058 TAGAGGAGGTGGCGGTTGTA 59.960 55.0 0.00 0.0 0.00 2.41 F
4733 4981 0.106149 GTGAGGACCGAAACACTGGT 59.894 55.0 0.00 0.0 42.42 4.00 F
6106 7105 0.107654 CGGAGGGAGGTTTGATGGTC 60.108 60.0 0.00 0.0 0.00 4.02 F
6390 7393 0.108138 CCCGAGGTCTCACCATTGAC 60.108 60.0 0.00 0.0 41.95 3.18 F
8147 9186 0.241749 TGGTGCGACGAAGAATACGT 59.758 50.0 0.00 0.0 46.58 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1611 1.204146 GAAGTACAGCCAGGGGATCA 58.796 55.000 0.00 0.00 0.00 2.92 R
2352 2466 1.956629 GATGCTGCAGCCTGCCAATT 61.957 55.000 34.64 9.88 44.23 2.32 R
3860 4082 0.179045 CCGTTGGAGATGCCCTAAGG 60.179 60.000 0.00 0.00 34.97 2.69 R
3861 4083 0.830648 TCCGTTGGAGATGCCCTAAG 59.169 55.000 0.00 0.00 34.97 2.18 R
4328 4576 0.040794 AAGAGTAGTGCCCGGTAGGT 59.959 55.000 0.00 0.00 38.26 3.08 R
6003 7002 0.031994 CTGCAAACCGGGGACAAAAG 59.968 55.000 6.32 0.00 0.00 2.27 R
6109 7108 0.108329 ACGTAAGGGCATCTCCAACG 60.108 55.000 0.00 0.00 46.39 4.10 R
6110 7109 1.207329 AGACGTAAGGGCATCTCCAAC 59.793 52.381 0.00 0.00 46.39 3.77 R
6111 7110 1.568504 AGACGTAAGGGCATCTCCAA 58.431 50.000 0.00 0.00 46.39 3.53 R
7083 8110 0.391927 CCGGAGCATAACCAACGGAA 60.392 55.000 0.00 0.00 43.69 4.30 R
8177 9216 0.393944 AGTGTGGCAGCATCATGGAG 60.394 55.000 0.00 0.00 0.00 3.86 R
9035 10223 0.453793 AGTCTTCGTCCTCATGAGCG 59.546 55.000 17.76 15.86 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 6.455113 GCATCTTATTTTGCTTAGAACGACGA 60.455 38.462 0.00 0.00 35.95 4.20
98 99 5.404366 GCATTATAAGATTGTCGGCGTTCTA 59.596 40.000 6.85 0.00 0.00 2.10
105 106 0.745486 TGTCGGCGTTCTAGGATCGA 60.745 55.000 6.85 0.00 0.00 3.59
187 190 1.467734 CAGCTGCAAGGCTTCTAAGTG 59.532 52.381 0.00 0.00 41.00 3.16
266 269 1.146263 GGCGGATGGAGGACGAAAT 59.854 57.895 0.00 0.00 0.00 2.17
269 272 1.340248 GCGGATGGAGGACGAAATAGA 59.660 52.381 0.00 0.00 0.00 1.98
308 311 3.327757 TGCTGCCATAGGATAGGTTTAGG 59.672 47.826 0.00 0.00 0.00 2.69
317 320 0.326808 ATAGGTTTAGGGCCGGGTCA 60.327 55.000 2.18 0.00 0.00 4.02
375 380 0.443478 TCGTGCTTGCATGAATGTCG 59.557 50.000 14.26 4.41 0.00 4.35
379 384 0.109179 GCTTGCATGAATGTCGCCAA 60.109 50.000 3.33 0.00 0.00 4.52
397 402 4.326009 CGCCAACTTTGTATAAAATGCACC 59.674 41.667 0.00 0.00 0.00 5.01
446 452 8.682128 TTGTTGAAGAAGTGTTTGAAATGTAC 57.318 30.769 0.00 0.00 0.00 2.90
454 460 0.952280 TTTGAAATGTACGCGGGCAA 59.048 45.000 12.47 0.69 0.00 4.52
483 489 2.731571 GGCCTCCTGCATCCGTGTA 61.732 63.158 0.00 0.00 43.89 2.90
498 504 0.172803 GTGTACGCGAACTGATCCCT 59.827 55.000 15.93 0.00 0.00 4.20
499 505 0.892755 TGTACGCGAACTGATCCCTT 59.107 50.000 15.93 0.00 0.00 3.95
501 507 2.492881 TGTACGCGAACTGATCCCTTTA 59.507 45.455 15.93 0.00 0.00 1.85
506 512 3.809832 CGCGAACTGATCCCTTTATTCAT 59.190 43.478 0.00 0.00 0.00 2.57
518 524 3.689161 CCTTTATTCATGGACGAGTGCAA 59.311 43.478 0.82 0.00 33.77 4.08
542 548 6.527423 AGAGGAAATTTACAGGTTGTCGTTA 58.473 36.000 2.58 0.00 0.00 3.18
580 586 3.935203 GGATAGAATGTATGACCATGCGG 59.065 47.826 0.00 0.00 38.77 5.69
619 625 7.613146 CATGTAACTAGCTTCAACGATTGTAG 58.387 38.462 0.00 0.00 0.00 2.74
654 660 4.385825 ACAATAACGGACAACATCACACT 58.614 39.130 0.00 0.00 0.00 3.55
754 775 3.070159 TGTGAAGTGGGAGAGAAACTCTG 59.930 47.826 6.00 0.00 41.35 3.35
755 776 3.070302 GTGAAGTGGGAGAGAAACTCTGT 59.930 47.826 6.00 0.00 41.35 3.41
756 777 3.322254 TGAAGTGGGAGAGAAACTCTGTC 59.678 47.826 6.00 0.00 41.35 3.51
768 789 4.837860 AGAAACTCTGTCCAGACAAGAGAT 59.162 41.667 22.73 14.33 41.33 2.75
769 790 5.306678 AGAAACTCTGTCCAGACAAGAGATT 59.693 40.000 22.73 19.13 41.33 2.40
770 791 4.533919 ACTCTGTCCAGACAAGAGATTG 57.466 45.455 22.73 5.01 41.33 2.67
867 971 9.924650 AAGATCAGATTCCTTCAAAAGAAATTG 57.075 29.630 0.00 0.00 0.00 2.32
890 994 6.308675 TGTTTATAGAAATCGTTTGTTCGGC 58.691 36.000 0.00 0.00 0.00 5.54
894 998 2.466520 AAATCGTTTGTTCGGCCCGC 62.467 55.000 0.00 0.00 0.00 6.13
1018 1122 1.791555 CGATGACAACAAGGCGAATGC 60.792 52.381 0.00 0.00 41.71 3.56
1343 1447 2.639327 GCCTTCTTGCCGCCATGTT 61.639 57.895 0.00 0.00 0.00 2.71
1362 1466 4.664188 TGTTTTCTTTTACTGGTTGCGTC 58.336 39.130 0.00 0.00 0.00 5.19
1405 1509 9.846248 CTCATTTTTCTGGAGGTTATTTTACTG 57.154 33.333 0.00 0.00 0.00 2.74
1407 1511 9.626045 CATTTTTCTGGAGGTTATTTTACTGAC 57.374 33.333 0.00 0.00 0.00 3.51
1410 1514 3.602483 TGGAGGTTATTTTACTGACGGC 58.398 45.455 0.00 0.00 0.00 5.68
1430 1534 2.679930 GCCAGGTCAACGTAGCCTAAAT 60.680 50.000 5.35 0.00 0.00 1.40
1435 1539 6.406177 CCAGGTCAACGTAGCCTAAATAGTTA 60.406 42.308 5.35 0.00 0.00 2.24
1436 1540 6.474751 CAGGTCAACGTAGCCTAAATAGTTAC 59.525 42.308 5.35 0.00 0.00 2.50
1437 1541 6.153340 AGGTCAACGTAGCCTAAATAGTTACA 59.847 38.462 3.98 0.00 0.00 2.41
1462 1569 9.778993 CAGTCACAATTTAGGAATACAAGATTG 57.221 33.333 0.00 0.00 0.00 2.67
1464 1571 7.702348 GTCACAATTTAGGAATACAAGATTGCC 59.298 37.037 0.00 0.00 0.00 4.52
1481 1588 3.988379 TGCCTTGCTTGTTCTTAACAG 57.012 42.857 0.00 0.00 43.27 3.16
1524 1636 3.165071 CCCCTGGCTGTACTTCATTTTT 58.835 45.455 0.00 0.00 0.00 1.94
1525 1637 3.193479 CCCCTGGCTGTACTTCATTTTTC 59.807 47.826 0.00 0.00 0.00 2.29
1526 1638 4.082125 CCCTGGCTGTACTTCATTTTTCT 58.918 43.478 0.00 0.00 0.00 2.52
1527 1639 4.156739 CCCTGGCTGTACTTCATTTTTCTC 59.843 45.833 0.00 0.00 0.00 2.87
1532 1646 6.978080 TGGCTGTACTTCATTTTTCTCAAAAC 59.022 34.615 0.00 0.00 34.63 2.43
1553 1667 9.626045 CAAAACAATCACTAAACTTTAGGATCC 57.374 33.333 2.48 2.48 0.00 3.36
1707 1821 1.558294 TGCTGAGAATGAGGAGCATGT 59.442 47.619 0.00 0.00 36.54 3.21
1855 1969 4.260985 TCATGATGGTTCAAACATACGCT 58.739 39.130 0.00 0.00 34.96 5.07
1879 1993 1.002430 CTAGCAGACCACTTTGCCTCA 59.998 52.381 0.00 0.00 41.17 3.86
1930 2044 2.429571 GCGAGACGGCGTTACACA 60.430 61.111 16.19 0.00 0.00 3.72
2057 2171 0.396435 AGTGACGACTTGCCAATCCA 59.604 50.000 0.00 0.00 0.00 3.41
2058 2172 0.517316 GTGACGACTTGCCAATCCAC 59.483 55.000 0.00 0.00 0.00 4.02
2100 2214 3.317150 GCAACTGAATGCTTTGTTACCC 58.683 45.455 0.00 0.00 43.06 3.69
2105 2219 4.074970 CTGAATGCTTTGTTACCCTCTGT 58.925 43.478 0.00 0.00 0.00 3.41
2181 2295 1.596603 TGCAACAGACATGACACTGG 58.403 50.000 17.73 7.33 38.30 4.00
2198 2312 4.248859 CACTGGTGTCTATCAAGGACAAG 58.751 47.826 0.00 0.00 43.90 3.16
2352 2466 2.032528 CAGCAAGGGAGGCGTTCA 59.967 61.111 0.00 0.00 36.08 3.18
2354 2468 0.962356 CAGCAAGGGAGGCGTTCAAT 60.962 55.000 0.00 0.00 36.08 2.57
2674 2789 4.408596 TGATGTCCACAAGCCATCATACTA 59.591 41.667 0.00 0.00 39.87 1.82
2822 2938 8.225603 AGTTGGTAGACCTGCAAATATTAATG 57.774 34.615 0.00 0.00 36.82 1.90
2823 2939 7.834181 AGTTGGTAGACCTGCAAATATTAATGT 59.166 33.333 0.00 0.00 36.82 2.71
2833 2957 7.597369 CCTGCAAATATTAATGTGGTCATCATG 59.403 37.037 0.00 0.00 32.56 3.07
2994 3118 3.915437 AAGTTTGCACCGTTATTGAGG 57.085 42.857 0.00 0.00 0.00 3.86
3141 3353 5.291971 GCATGAACTTGAAACAGGAACATT 58.708 37.500 0.00 0.00 0.00 2.71
3142 3354 5.754890 GCATGAACTTGAAACAGGAACATTT 59.245 36.000 0.00 0.00 0.00 2.32
3143 3355 6.922957 GCATGAACTTGAAACAGGAACATTTA 59.077 34.615 0.00 0.00 0.00 1.40
3144 3356 7.096065 GCATGAACTTGAAACAGGAACATTTAC 60.096 37.037 0.00 0.00 0.00 2.01
3145 3357 7.639113 TGAACTTGAAACAGGAACATTTACT 57.361 32.000 0.00 0.00 0.00 2.24
3146 3358 7.703328 TGAACTTGAAACAGGAACATTTACTC 58.297 34.615 0.00 0.00 0.00 2.59
3147 3359 7.338196 TGAACTTGAAACAGGAACATTTACTCA 59.662 33.333 0.00 0.00 0.00 3.41
3148 3360 7.823745 ACTTGAAACAGGAACATTTACTCAT 57.176 32.000 0.00 0.00 0.00 2.90
3149 3361 8.237811 ACTTGAAACAGGAACATTTACTCATT 57.762 30.769 0.00 0.00 0.00 2.57
3160 3372 6.267496 ACATTTACTCATTTAGTGCCAACC 57.733 37.500 0.00 0.00 39.39 3.77
3173 3385 2.551270 CAACCGAGTTCGCTGTGC 59.449 61.111 0.00 0.00 38.18 4.57
3335 3549 6.687081 TTGGTTTTACTAGATAATTGCCCG 57.313 37.500 0.00 0.00 0.00 6.13
3346 3560 3.839642 ATTGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 46.60 4.17
3524 3745 6.017523 GTGGTTTTCAACAAAAATATGTGGGG 60.018 38.462 0.00 0.00 39.01 4.96
3860 4082 4.287766 ACTGGTCAGTGAAATAGGGAAC 57.712 45.455 2.46 0.00 40.75 3.62
3861 4083 3.009143 ACTGGTCAGTGAAATAGGGAACC 59.991 47.826 2.46 0.00 45.85 3.62
3880 4102 0.830648 CTTAGGGCATCTCCAACGGA 59.169 55.000 0.00 0.00 36.21 4.69
3998 4222 5.470777 CCAACTGGACAAAATTCATGCAAAT 59.529 36.000 0.00 0.00 37.39 2.32
4024 4269 4.142600 GGCCGGATTTCATATAAGCATGAC 60.143 45.833 5.05 0.00 34.69 3.06
4107 4355 4.563140 ACCTAATCTAAAAGGTTGCCGA 57.437 40.909 0.00 0.00 43.77 5.54
4108 4356 4.259356 ACCTAATCTAAAAGGTTGCCGAC 58.741 43.478 0.00 0.00 43.77 4.79
4111 4359 0.952010 TCTAAAAGGTTGCCGACGCC 60.952 55.000 0.00 0.00 0.00 5.68
4149 4397 2.538437 CATGAGCCTCGAGAACTGAAG 58.462 52.381 15.71 0.00 0.00 3.02
4154 4402 1.623359 CCTCGAGAACTGAAGCTTCG 58.377 55.000 21.11 17.22 0.00 3.79
4160 4408 1.346068 AGAACTGAAGCTTCGCCTTCT 59.654 47.619 21.11 20.30 41.36 2.85
4161 4409 1.729517 GAACTGAAGCTTCGCCTTCTC 59.270 52.381 21.11 8.20 41.36 2.87
4162 4410 0.972883 ACTGAAGCTTCGCCTTCTCT 59.027 50.000 21.11 0.00 41.36 3.10
4163 4411 2.171840 ACTGAAGCTTCGCCTTCTCTA 58.828 47.619 21.11 0.00 41.36 2.43
4164 4412 2.165437 ACTGAAGCTTCGCCTTCTCTAG 59.835 50.000 21.11 11.76 41.36 2.43
4165 4413 1.134965 TGAAGCTTCGCCTTCTCTAGC 60.135 52.381 21.11 0.00 41.36 3.42
4166 4414 1.136110 GAAGCTTCGCCTTCTCTAGCT 59.864 52.381 11.40 0.00 43.58 3.32
4167 4415 0.744281 AGCTTCGCCTTCTCTAGCTC 59.256 55.000 0.00 0.00 37.64 4.09
4168 4416 0.249280 GCTTCGCCTTCTCTAGCTCC 60.249 60.000 0.00 0.00 0.00 4.70
4169 4417 0.030101 CTTCGCCTTCTCTAGCTCCG 59.970 60.000 0.00 0.00 0.00 4.63
4170 4418 2.005960 TTCGCCTTCTCTAGCTCCGC 62.006 60.000 0.00 0.00 0.00 5.54
4171 4419 2.419620 GCCTTCTCTAGCTCCGCC 59.580 66.667 0.00 0.00 0.00 6.13
4172 4420 2.131067 GCCTTCTCTAGCTCCGCCT 61.131 63.158 0.00 0.00 0.00 5.52
4173 4421 2.037871 CCTTCTCTAGCTCCGCCTC 58.962 63.158 0.00 0.00 0.00 4.70
4174 4422 0.753479 CCTTCTCTAGCTCCGCCTCA 60.753 60.000 0.00 0.00 0.00 3.86
4175 4423 0.667993 CTTCTCTAGCTCCGCCTCAG 59.332 60.000 0.00 0.00 0.00 3.35
4176 4424 1.388065 TTCTCTAGCTCCGCCTCAGC 61.388 60.000 0.00 0.00 37.12 4.26
4186 4434 2.817396 GCCTCAGCGCTCTCCAAC 60.817 66.667 7.13 0.00 0.00 3.77
4187 4435 2.977178 CCTCAGCGCTCTCCAACT 59.023 61.111 7.13 0.00 0.00 3.16
4188 4436 1.153667 CCTCAGCGCTCTCCAACTC 60.154 63.158 7.13 0.00 0.00 3.01
4189 4437 1.153667 CTCAGCGCTCTCCAACTCC 60.154 63.158 7.13 0.00 0.00 3.85
4190 4438 2.507992 CAGCGCTCTCCAACTCCG 60.508 66.667 7.13 0.00 0.00 4.63
4191 4439 4.443266 AGCGCTCTCCAACTCCGC 62.443 66.667 2.64 0.00 44.47 5.54
4193 4441 3.764466 CGCTCTCCAACTCCGCCT 61.764 66.667 0.00 0.00 0.00 5.52
4194 4442 2.185608 GCTCTCCAACTCCGCCTC 59.814 66.667 0.00 0.00 0.00 4.70
4195 4443 2.896443 CTCTCCAACTCCGCCTCC 59.104 66.667 0.00 0.00 0.00 4.30
4196 4444 3.068691 TCTCCAACTCCGCCTCCG 61.069 66.667 0.00 0.00 0.00 4.63
4206 4454 3.610669 CGCCTCCGGAGATCTGGG 61.611 72.222 33.39 19.33 42.72 4.45
4207 4455 2.123251 GCCTCCGGAGATCTGGGA 60.123 66.667 33.39 5.91 42.72 4.37
4208 4456 1.762460 GCCTCCGGAGATCTGGGAA 60.762 63.158 33.39 0.00 42.72 3.97
4209 4457 1.753368 GCCTCCGGAGATCTGGGAAG 61.753 65.000 33.39 13.39 42.72 3.46
4210 4458 0.397816 CCTCCGGAGATCTGGGAAGT 60.398 60.000 33.39 0.00 42.72 3.01
4211 4459 0.749649 CTCCGGAGATCTGGGAAGTG 59.250 60.000 28.21 0.00 42.72 3.16
4212 4460 0.335019 TCCGGAGATCTGGGAAGTGA 59.665 55.000 0.00 0.00 42.72 3.41
4213 4461 1.195115 CCGGAGATCTGGGAAGTGAA 58.805 55.000 0.00 0.00 38.76 3.18
4214 4462 1.137872 CCGGAGATCTGGGAAGTGAAG 59.862 57.143 0.00 0.00 38.76 3.02
4215 4463 1.827969 CGGAGATCTGGGAAGTGAAGT 59.172 52.381 0.00 0.00 0.00 3.01
4216 4464 2.234908 CGGAGATCTGGGAAGTGAAGTT 59.765 50.000 0.00 0.00 0.00 2.66
4217 4465 3.604582 GGAGATCTGGGAAGTGAAGTTG 58.395 50.000 0.00 0.00 0.00 3.16
4218 4466 3.008485 GGAGATCTGGGAAGTGAAGTTGT 59.992 47.826 0.00 0.00 0.00 3.32
4219 4467 4.505742 GGAGATCTGGGAAGTGAAGTTGTT 60.506 45.833 0.00 0.00 0.00 2.83
4220 4468 4.646572 AGATCTGGGAAGTGAAGTTGTTC 58.353 43.478 0.00 0.00 0.00 3.18
4221 4469 2.833794 TCTGGGAAGTGAAGTTGTTCG 58.166 47.619 0.00 0.00 35.17 3.95
4222 4470 1.264288 CTGGGAAGTGAAGTTGTTCGC 59.736 52.381 0.00 0.00 42.60 4.70
4223 4471 0.591659 GGGAAGTGAAGTTGTTCGCC 59.408 55.000 0.00 0.00 43.19 5.54
4224 4472 1.594331 GGAAGTGAAGTTGTTCGCCT 58.406 50.000 0.00 0.00 43.19 5.52
4225 4473 1.531578 GGAAGTGAAGTTGTTCGCCTC 59.468 52.381 0.00 0.00 43.19 4.70
4226 4474 1.531578 GAAGTGAAGTTGTTCGCCTCC 59.468 52.381 0.00 0.00 43.19 4.30
4227 4475 0.468226 AGTGAAGTTGTTCGCCTCCA 59.532 50.000 0.00 0.00 43.19 3.86
4228 4476 0.586802 GTGAAGTTGTTCGCCTCCAC 59.413 55.000 0.00 0.00 37.24 4.02
4229 4477 0.878523 TGAAGTTGTTCGCCTCCACG 60.879 55.000 0.00 0.00 35.17 4.94
4230 4478 0.878961 GAAGTTGTTCGCCTCCACGT 60.879 55.000 0.00 0.00 0.00 4.49
4231 4479 0.878961 AAGTTGTTCGCCTCCACGTC 60.879 55.000 0.00 0.00 0.00 4.34
4232 4480 2.355363 TTGTTCGCCTCCACGTCG 60.355 61.111 0.00 0.00 0.00 5.12
4253 4501 3.924507 CCAAGCGGCTAATTGGCT 58.075 55.556 13.90 1.74 39.58 4.75
4254 4502 1.434696 CCAAGCGGCTAATTGGCTG 59.565 57.895 17.68 17.68 39.58 4.85
4259 4507 4.164258 GGCTAATTGGCTGCCGAT 57.836 55.556 15.87 15.87 37.11 4.18
4260 4508 1.656441 GGCTAATTGGCTGCCGATG 59.344 57.895 21.88 11.55 37.11 3.84
4261 4509 1.103398 GGCTAATTGGCTGCCGATGT 61.103 55.000 21.88 13.83 37.11 3.06
4262 4510 0.740737 GCTAATTGGCTGCCGATGTT 59.259 50.000 21.88 10.79 0.00 2.71
4263 4511 1.534595 GCTAATTGGCTGCCGATGTTG 60.535 52.381 21.88 14.93 0.00 3.33
4264 4512 2.016318 CTAATTGGCTGCCGATGTTGA 58.984 47.619 21.88 7.41 0.00 3.18
4265 4513 0.813184 AATTGGCTGCCGATGTTGAG 59.187 50.000 21.88 0.00 0.00 3.02
4266 4514 1.660560 ATTGGCTGCCGATGTTGAGC 61.661 55.000 20.60 0.00 0.00 4.26
4267 4515 3.512516 GGCTGCCGATGTTGAGCC 61.513 66.667 1.35 0.00 44.10 4.70
4268 4516 3.512516 GCTGCCGATGTTGAGCCC 61.513 66.667 0.00 0.00 0.00 5.19
4269 4517 2.046023 CTGCCGATGTTGAGCCCA 60.046 61.111 0.00 0.00 0.00 5.36
4270 4518 2.359850 TGCCGATGTTGAGCCCAC 60.360 61.111 0.00 0.00 0.00 4.61
4271 4519 3.134127 GCCGATGTTGAGCCCACC 61.134 66.667 0.00 0.00 0.00 4.61
4272 4520 2.350895 CCGATGTTGAGCCCACCA 59.649 61.111 0.00 0.00 0.00 4.17
4273 4521 1.303236 CCGATGTTGAGCCCACCAA 60.303 57.895 0.00 0.00 0.00 3.67
4274 4522 1.308069 CCGATGTTGAGCCCACCAAG 61.308 60.000 0.00 0.00 0.00 3.61
4275 4523 1.885871 GATGTTGAGCCCACCAAGC 59.114 57.895 0.00 0.00 0.00 4.01
4276 4524 0.610232 GATGTTGAGCCCACCAAGCT 60.610 55.000 0.00 0.00 45.23 3.74
4277 4525 0.178953 ATGTTGAGCCCACCAAGCTT 60.179 50.000 0.00 0.00 41.75 3.74
4278 4526 1.108727 TGTTGAGCCCACCAAGCTTG 61.109 55.000 19.93 19.93 41.75 4.01
4287 4535 4.324424 CCAAGCTTGGCGTTGTTG 57.676 55.556 31.70 6.62 42.21 3.33
4288 4536 1.300080 CCAAGCTTGGCGTTGTTGG 60.300 57.895 31.70 6.73 42.21 3.77
4289 4537 1.300080 CAAGCTTGGCGTTGTTGGG 60.300 57.895 19.14 0.00 0.00 4.12
4290 4538 1.454847 AAGCTTGGCGTTGTTGGGA 60.455 52.632 0.00 0.00 0.00 4.37
4291 4539 1.455383 AAGCTTGGCGTTGTTGGGAG 61.455 55.000 0.00 0.00 0.00 4.30
4292 4540 1.896660 GCTTGGCGTTGTTGGGAGA 60.897 57.895 0.00 0.00 0.00 3.71
4293 4541 1.856265 GCTTGGCGTTGTTGGGAGAG 61.856 60.000 0.00 0.00 0.00 3.20
4294 4542 1.228124 TTGGCGTTGTTGGGAGAGG 60.228 57.895 0.00 0.00 0.00 3.69
4295 4543 2.359975 GGCGTTGTTGGGAGAGGG 60.360 66.667 0.00 0.00 0.00 4.30
4296 4544 2.359975 GCGTTGTTGGGAGAGGGG 60.360 66.667 0.00 0.00 0.00 4.79
4297 4545 2.359975 CGTTGTTGGGAGAGGGGC 60.360 66.667 0.00 0.00 0.00 5.80
4298 4546 2.843545 GTTGTTGGGAGAGGGGCA 59.156 61.111 0.00 0.00 0.00 5.36
4299 4547 1.303643 GTTGTTGGGAGAGGGGCAG 60.304 63.158 0.00 0.00 0.00 4.85
4300 4548 1.774217 TTGTTGGGAGAGGGGCAGT 60.774 57.895 0.00 0.00 0.00 4.40
4301 4549 2.067932 TTGTTGGGAGAGGGGCAGTG 62.068 60.000 0.00 0.00 0.00 3.66
4302 4550 2.935481 TTGGGAGAGGGGCAGTGG 60.935 66.667 0.00 0.00 0.00 4.00
4313 4561 3.650950 GCAGTGGCCTTCCTGGGA 61.651 66.667 16.13 0.00 36.00 4.37
4314 4562 2.673523 CAGTGGCCTTCCTGGGAG 59.326 66.667 3.32 0.00 36.00 4.30
4315 4563 3.334054 AGTGGCCTTCCTGGGAGC 61.334 66.667 3.32 0.00 36.00 4.70
4316 4564 4.432741 GTGGCCTTCCTGGGAGCC 62.433 72.222 3.32 13.53 45.96 4.70
4318 4566 3.661648 GGCCTTCCTGGGAGCCAA 61.662 66.667 14.97 0.00 45.07 4.52
4319 4567 2.044551 GCCTTCCTGGGAGCCAAG 60.045 66.667 0.00 0.00 36.00 3.61
4320 4568 2.044551 CCTTCCTGGGAGCCAAGC 60.045 66.667 0.00 0.00 30.80 4.01
4321 4569 2.437359 CTTCCTGGGAGCCAAGCG 60.437 66.667 0.00 0.00 30.80 4.68
4322 4570 3.984193 CTTCCTGGGAGCCAAGCGG 62.984 68.421 0.00 0.00 30.80 5.52
4332 4580 3.458163 CCAAGCGGCGGAGACCTA 61.458 66.667 9.78 0.00 0.00 3.08
4333 4581 2.202756 CAAGCGGCGGAGACCTAC 60.203 66.667 9.78 0.00 0.00 3.18
4334 4582 3.459063 AAGCGGCGGAGACCTACC 61.459 66.667 9.78 0.00 0.00 3.18
4340 4588 3.834799 CGGAGACCTACCGGGCAC 61.835 72.222 6.32 0.00 42.67 5.01
4341 4589 2.363925 GGAGACCTACCGGGCACT 60.364 66.667 6.32 0.00 42.67 4.40
4342 4590 1.076485 GGAGACCTACCGGGCACTA 60.076 63.158 6.32 0.00 42.67 2.74
4343 4591 1.390383 GGAGACCTACCGGGCACTAC 61.390 65.000 6.32 0.00 42.67 2.73
4344 4592 0.395448 GAGACCTACCGGGCACTACT 60.395 60.000 6.32 0.00 42.67 2.57
4345 4593 0.395448 AGACCTACCGGGCACTACTC 60.395 60.000 6.32 0.00 42.67 2.59
4346 4594 0.395448 GACCTACCGGGCACTACTCT 60.395 60.000 6.32 0.00 38.64 3.24
4347 4595 0.040794 ACCTACCGGGCACTACTCTT 59.959 55.000 6.32 0.00 39.10 2.85
4348 4596 0.745468 CCTACCGGGCACTACTCTTC 59.255 60.000 6.32 0.00 0.00 2.87
4349 4597 0.745468 CTACCGGGCACTACTCTTCC 59.255 60.000 6.32 0.00 0.00 3.46
4350 4598 0.333993 TACCGGGCACTACTCTTCCT 59.666 55.000 6.32 0.00 0.00 3.36
4351 4599 0.971447 ACCGGGCACTACTCTTCCTC 60.971 60.000 6.32 0.00 0.00 3.71
4352 4600 1.433879 CGGGCACTACTCTTCCTCG 59.566 63.158 0.00 0.00 0.00 4.63
4353 4601 1.142097 GGGCACTACTCTTCCTCGC 59.858 63.158 0.00 0.00 0.00 5.03
4354 4602 1.324005 GGGCACTACTCTTCCTCGCT 61.324 60.000 0.00 0.00 0.00 4.93
4355 4603 0.179124 GGCACTACTCTTCCTCGCTG 60.179 60.000 0.00 0.00 0.00 5.18
4356 4604 0.804156 GCACTACTCTTCCTCGCTGC 60.804 60.000 0.00 0.00 0.00 5.25
4357 4605 0.179124 CACTACTCTTCCTCGCTGCC 60.179 60.000 0.00 0.00 0.00 4.85
4358 4606 1.064946 CTACTCTTCCTCGCTGCCG 59.935 63.158 0.00 0.00 0.00 5.69
4359 4607 2.343163 CTACTCTTCCTCGCTGCCGG 62.343 65.000 0.00 0.00 34.56 6.13
4384 4632 3.925238 CGCGTACATGCCGGCTTC 61.925 66.667 29.70 8.74 0.00 3.86
4385 4633 3.925238 GCGTACATGCCGGCTTCG 61.925 66.667 29.70 21.13 0.00 3.79
4386 4634 2.508439 CGTACATGCCGGCTTCGT 60.508 61.111 29.70 22.73 0.00 3.85
4387 4635 2.798501 CGTACATGCCGGCTTCGTG 61.799 63.158 29.70 21.71 0.00 4.35
4388 4636 2.125310 TACATGCCGGCTTCGTGG 60.125 61.111 29.70 11.87 0.00 4.94
4389 4637 2.949909 TACATGCCGGCTTCGTGGT 61.950 57.895 29.70 17.18 0.00 4.16
4390 4638 2.845752 TACATGCCGGCTTCGTGGTC 62.846 60.000 29.70 0.00 0.00 4.02
4424 4672 4.148825 GCCGCACCGATGTCCTCT 62.149 66.667 0.00 0.00 0.00 3.69
4425 4673 2.579201 CCGCACCGATGTCCTCTT 59.421 61.111 0.00 0.00 0.00 2.85
4426 4674 1.519455 CCGCACCGATGTCCTCTTC 60.519 63.158 0.00 0.00 0.00 2.87
4427 4675 1.519455 CGCACCGATGTCCTCTTCC 60.519 63.158 0.00 0.00 0.00 3.46
4428 4676 1.901085 GCACCGATGTCCTCTTCCT 59.099 57.895 0.00 0.00 0.00 3.36
4429 4677 0.179097 GCACCGATGTCCTCTTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
4430 4678 0.461961 CACCGATGTCCTCTTCCTCC 59.538 60.000 0.00 0.00 0.00 4.30
4431 4679 0.336737 ACCGATGTCCTCTTCCTCCT 59.663 55.000 0.00 0.00 0.00 3.69
4432 4680 1.036707 CCGATGTCCTCTTCCTCCTC 58.963 60.000 0.00 0.00 0.00 3.71
4433 4681 0.665835 CGATGTCCTCTTCCTCCTCG 59.334 60.000 0.00 0.00 0.00 4.63
4434 4682 1.770294 GATGTCCTCTTCCTCCTCGT 58.230 55.000 0.00 0.00 0.00 4.18
4435 4683 1.679153 GATGTCCTCTTCCTCCTCGTC 59.321 57.143 0.00 0.00 0.00 4.20
4436 4684 0.677098 TGTCCTCTTCCTCCTCGTCG 60.677 60.000 0.00 0.00 0.00 5.12
4437 4685 1.077644 TCCTCTTCCTCCTCGTCGG 60.078 63.158 0.00 0.00 0.00 4.79
4438 4686 1.378778 CCTCTTCCTCCTCGTCGGT 60.379 63.158 0.00 0.00 0.00 4.69
4439 4687 1.378124 CCTCTTCCTCCTCGTCGGTC 61.378 65.000 0.00 0.00 0.00 4.79
4440 4688 0.393267 CTCTTCCTCCTCGTCGGTCT 60.393 60.000 0.00 0.00 0.00 3.85
4441 4689 0.037877 TCTTCCTCCTCGTCGGTCTT 59.962 55.000 0.00 0.00 0.00 3.01
4442 4690 0.452585 CTTCCTCCTCGTCGGTCTTC 59.547 60.000 0.00 0.00 0.00 2.87
4443 4691 0.964358 TTCCTCCTCGTCGGTCTTCC 60.964 60.000 0.00 0.00 0.00 3.46
4444 4692 2.416432 CCTCCTCGTCGGTCTTCCC 61.416 68.421 0.00 0.00 0.00 3.97
4453 4701 2.741211 GGTCTTCCCGAACACCGC 60.741 66.667 0.00 0.00 36.84 5.68
4454 4702 2.741211 GTCTTCCCGAACACCGCC 60.741 66.667 0.00 0.00 36.84 6.13
4455 4703 2.920912 TCTTCCCGAACACCGCCT 60.921 61.111 0.00 0.00 36.84 5.52
4456 4704 2.032071 CTTCCCGAACACCGCCTT 59.968 61.111 0.00 0.00 36.84 4.35
4457 4705 2.281208 TTCCCGAACACCGCCTTG 60.281 61.111 0.00 0.00 36.84 3.61
4462 4710 3.056328 GAACACCGCCTTGCCCTC 61.056 66.667 0.00 0.00 0.00 4.30
4463 4711 4.660938 AACACCGCCTTGCCCTCC 62.661 66.667 0.00 0.00 0.00 4.30
4465 4713 4.785453 CACCGCCTTGCCCTCCTC 62.785 72.222 0.00 0.00 0.00 3.71
4468 4716 4.821589 CGCCTTGCCCTCCTCGTC 62.822 72.222 0.00 0.00 0.00 4.20
4469 4717 4.821589 GCCTTGCCCTCCTCGTCG 62.822 72.222 0.00 0.00 0.00 5.12
4470 4718 4.821589 CCTTGCCCTCCTCGTCGC 62.822 72.222 0.00 0.00 0.00 5.19
4471 4719 4.821589 CTTGCCCTCCTCGTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
4476 4724 4.824515 CCTCCTCGTCGCCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
4477 4725 2.756283 CTCCTCGTCGCCCTCCTT 60.756 66.667 0.00 0.00 0.00 3.36
4478 4726 3.068691 TCCTCGTCGCCCTCCTTG 61.069 66.667 0.00 0.00 0.00 3.61
4479 4727 3.382832 CCTCGTCGCCCTCCTTGT 61.383 66.667 0.00 0.00 0.00 3.16
4480 4728 2.050350 CCTCGTCGCCCTCCTTGTA 61.050 63.158 0.00 0.00 0.00 2.41
4481 4729 1.433879 CTCGTCGCCCTCCTTGTAG 59.566 63.158 0.00 0.00 0.00 2.74
4482 4730 2.005960 CTCGTCGCCCTCCTTGTAGG 62.006 65.000 0.00 0.00 36.46 3.18
4483 4731 2.187163 GTCGCCCTCCTTGTAGGC 59.813 66.667 0.00 0.00 43.53 3.93
4484 4732 2.038975 TCGCCCTCCTTGTAGGCT 59.961 61.111 0.00 0.00 44.84 4.58
4485 4733 1.612442 TCGCCCTCCTTGTAGGCTT 60.612 57.895 0.00 0.00 44.84 4.35
4486 4734 1.153349 CGCCCTCCTTGTAGGCTTC 60.153 63.158 0.00 0.00 44.84 3.86
4487 4735 1.224870 GCCCTCCTTGTAGGCTTCC 59.775 63.158 0.00 0.00 43.62 3.46
4488 4736 1.275421 GCCCTCCTTGTAGGCTTCCT 61.275 60.000 0.00 0.00 43.62 3.36
4489 4737 0.833949 CCCTCCTTGTAGGCTTCCTC 59.166 60.000 0.00 0.00 34.61 3.71
4490 4738 0.833949 CCTCCTTGTAGGCTTCCTCC 59.166 60.000 0.00 0.00 34.61 4.30
4491 4739 1.573108 CTCCTTGTAGGCTTCCTCCA 58.427 55.000 0.00 0.00 34.61 3.86
4492 4740 1.208293 CTCCTTGTAGGCTTCCTCCAC 59.792 57.143 0.00 0.00 34.61 4.02
4493 4741 0.253327 CCTTGTAGGCTTCCTCCACC 59.747 60.000 0.00 0.00 34.61 4.61
4494 4742 1.280457 CTTGTAGGCTTCCTCCACCT 58.720 55.000 0.00 0.00 34.61 4.00
4495 4743 1.208293 CTTGTAGGCTTCCTCCACCTC 59.792 57.143 0.00 0.00 34.61 3.85
4496 4744 0.617820 TGTAGGCTTCCTCCACCTCC 60.618 60.000 0.00 0.00 34.61 4.30
4497 4745 1.381327 TAGGCTTCCTCCACCTCCG 60.381 63.158 0.00 0.00 34.61 4.63
4498 4746 4.475135 GGCTTCCTCCACCTCCGC 62.475 72.222 0.00 0.00 0.00 5.54
4499 4747 4.475135 GCTTCCTCCACCTCCGCC 62.475 72.222 0.00 0.00 0.00 6.13
4500 4748 3.003173 CTTCCTCCACCTCCGCCA 61.003 66.667 0.00 0.00 0.00 5.69
4501 4749 3.316573 CTTCCTCCACCTCCGCCAC 62.317 68.421 0.00 0.00 0.00 5.01
4507 4755 4.704833 CACCTCCGCCACCCACTG 62.705 72.222 0.00 0.00 0.00 3.66
4515 4763 3.319198 CCACCCACTGGCGGTACT 61.319 66.667 0.00 0.00 31.36 2.73
4516 4764 2.047274 CACCCACTGGCGGTACTG 60.047 66.667 0.00 0.00 33.59 2.74
4517 4765 4.016706 ACCCACTGGCGGTACTGC 62.017 66.667 18.83 18.83 33.59 4.40
4555 4803 3.818787 GCGGGTCGAGCGGTAGAA 61.819 66.667 21.09 0.00 0.00 2.10
4556 4804 2.101770 CGGGTCGAGCGGTAGAAC 59.898 66.667 13.43 3.99 0.00 3.01
4557 4805 2.404995 CGGGTCGAGCGGTAGAACT 61.405 63.158 12.50 0.00 0.00 3.01
4558 4806 1.432657 GGGTCGAGCGGTAGAACTC 59.567 63.158 12.50 0.00 0.00 3.01
4562 4810 4.694102 GAGCGGTAGAACTCGAGC 57.306 61.111 13.61 0.00 0.00 5.03
4563 4811 1.801332 GAGCGGTAGAACTCGAGCA 59.199 57.895 13.61 0.00 0.00 4.26
4564 4812 0.248296 GAGCGGTAGAACTCGAGCAG 60.248 60.000 13.61 0.00 0.00 4.24
4565 4813 1.874466 GCGGTAGAACTCGAGCAGC 60.874 63.158 13.61 4.28 0.00 5.25
4566 4814 1.583967 CGGTAGAACTCGAGCAGCG 60.584 63.158 13.61 12.64 42.69 5.18
4567 4815 1.507174 GGTAGAACTCGAGCAGCGT 59.493 57.895 13.61 0.00 41.80 5.07
4568 4816 0.523757 GGTAGAACTCGAGCAGCGTC 60.524 60.000 13.61 2.50 41.80 5.19
4569 4817 0.448593 GTAGAACTCGAGCAGCGTCT 59.551 55.000 13.61 9.98 41.80 4.18
4570 4818 0.727970 TAGAACTCGAGCAGCGTCTC 59.272 55.000 13.61 0.00 41.80 3.36
4571 4819 1.515304 GAACTCGAGCAGCGTCTCC 60.515 63.158 13.61 0.00 41.80 3.71
4572 4820 1.928706 GAACTCGAGCAGCGTCTCCT 61.929 60.000 13.61 0.00 41.80 3.69
4573 4821 2.101965 CTCGAGCAGCGTCTCCTG 59.898 66.667 0.00 0.00 41.80 3.86
4579 4827 2.125753 CAGCGTCTCCTGCTCCAC 60.126 66.667 0.00 0.00 41.72 4.02
4580 4828 3.386237 AGCGTCTCCTGCTCCACC 61.386 66.667 0.00 0.00 38.62 4.61
4581 4829 3.695606 GCGTCTCCTGCTCCACCA 61.696 66.667 0.00 0.00 0.00 4.17
4582 4830 2.575993 CGTCTCCTGCTCCACCAG 59.424 66.667 0.00 0.00 0.00 4.00
4587 4835 2.930019 CCTGCTCCACCAGGTCCA 60.930 66.667 0.00 0.00 45.87 4.02
4588 4836 2.667418 CTGCTCCACCAGGTCCAG 59.333 66.667 0.00 0.00 35.89 3.86
4589 4837 2.122413 TGCTCCACCAGGTCCAGT 60.122 61.111 0.00 0.00 35.89 4.00
4590 4838 2.348998 GCTCCACCAGGTCCAGTG 59.651 66.667 5.30 5.30 35.89 3.66
4591 4839 2.520536 GCTCCACCAGGTCCAGTGT 61.521 63.158 10.29 0.00 35.89 3.55
4592 4840 1.674057 CTCCACCAGGTCCAGTGTC 59.326 63.158 10.29 0.00 35.89 3.67
4593 4841 0.833834 CTCCACCAGGTCCAGTGTCT 60.834 60.000 10.29 0.00 35.89 3.41
4594 4842 1.121407 TCCACCAGGTCCAGTGTCTG 61.121 60.000 10.29 0.00 35.89 3.51
4602 4850 3.357079 CCAGTGTCTGGCGCAACC 61.357 66.667 10.83 0.00 45.13 3.77
4603 4851 3.716006 CAGTGTCTGGCGCAACCG 61.716 66.667 10.83 0.00 43.94 4.44
4640 4888 4.463879 CTCCTCCGCCTGCAGGTG 62.464 72.222 34.93 34.93 45.02 4.00
4646 4894 3.774528 CGCCTGCAGGTGCTCCTA 61.775 66.667 32.12 0.00 43.07 2.94
4647 4895 2.188994 GCCTGCAGGTGCTCCTAG 59.811 66.667 32.81 5.52 43.07 3.02
4648 4896 2.362369 GCCTGCAGGTGCTCCTAGA 61.362 63.158 32.81 0.00 43.07 2.43
4649 4897 1.821936 CCTGCAGGTGCTCCTAGAG 59.178 63.158 25.53 6.18 43.07 2.43
4650 4898 1.684386 CCTGCAGGTGCTCCTAGAGG 61.684 65.000 25.53 11.40 43.07 3.69
4651 4899 0.685785 CTGCAGGTGCTCCTAGAGGA 60.686 60.000 7.08 0.00 43.07 3.71
4659 4907 2.279073 TCCTAGAGGAGGTGGCGG 59.721 66.667 0.00 0.00 46.76 6.13
4660 4908 2.042843 CCTAGAGGAGGTGGCGGT 60.043 66.667 0.00 0.00 40.98 5.68
4661 4909 1.686110 CCTAGAGGAGGTGGCGGTT 60.686 63.158 0.00 0.00 40.98 4.44
4662 4910 1.517832 CTAGAGGAGGTGGCGGTTG 59.482 63.158 0.00 0.00 0.00 3.77
4663 4911 1.229082 TAGAGGAGGTGGCGGTTGT 60.229 57.895 0.00 0.00 0.00 3.32
4664 4912 0.040058 TAGAGGAGGTGGCGGTTGTA 59.960 55.000 0.00 0.00 0.00 2.41
4665 4913 1.218316 GAGGAGGTGGCGGTTGTAG 59.782 63.158 0.00 0.00 0.00 2.74
4666 4914 2.240162 GAGGAGGTGGCGGTTGTAGG 62.240 65.000 0.00 0.00 0.00 3.18
4667 4915 2.436115 GAGGTGGCGGTTGTAGGC 60.436 66.667 0.00 0.00 0.00 3.93
4668 4916 4.388499 AGGTGGCGGTTGTAGGCG 62.388 66.667 0.00 0.00 36.92 5.52
4670 4918 4.692475 GTGGCGGTTGTAGGCGGT 62.692 66.667 0.00 0.00 36.92 5.68
4671 4919 3.943691 TGGCGGTTGTAGGCGGTT 61.944 61.111 0.00 0.00 36.92 4.44
4672 4920 3.428282 GGCGGTTGTAGGCGGTTG 61.428 66.667 0.00 0.00 0.00 3.77
4673 4921 2.667199 GCGGTTGTAGGCGGTTGT 60.667 61.111 0.00 0.00 0.00 3.32
4678 4926 2.148052 TTGTAGGCGGTTGTGGGGA 61.148 57.895 0.00 0.00 0.00 4.81
4680 4928 3.006728 TAGGCGGTTGTGGGGAGG 61.007 66.667 0.00 0.00 0.00 4.30
4689 4937 0.914417 TTGTGGGGAGGGGAGATGAC 60.914 60.000 0.00 0.00 0.00 3.06
4693 4941 0.178929 GGGGAGGGGAGATGACGTAT 60.179 60.000 0.00 0.00 0.00 3.06
4694 4942 0.969894 GGGAGGGGAGATGACGTATG 59.030 60.000 0.00 0.00 0.00 2.39
4695 4943 1.705873 GGAGGGGAGATGACGTATGT 58.294 55.000 0.00 0.00 0.00 2.29
4697 4945 2.820787 GGAGGGGAGATGACGTATGTAG 59.179 54.545 0.00 0.00 0.00 2.74
4698 4946 3.488363 GAGGGGAGATGACGTATGTAGT 58.512 50.000 0.00 0.00 0.00 2.73
4699 4947 3.223435 AGGGGAGATGACGTATGTAGTG 58.777 50.000 0.00 0.00 0.00 2.74
4700 4948 2.296471 GGGGAGATGACGTATGTAGTGG 59.704 54.545 0.00 0.00 0.00 4.00
4701 4949 2.288273 GGGAGATGACGTATGTAGTGGC 60.288 54.545 0.00 0.00 0.00 5.01
4721 4969 2.222027 CTGTTGGACAAAGGTGAGGAC 58.778 52.381 0.00 0.00 0.00 3.85
4731 4979 2.914379 GGTGAGGACCGAAACACTG 58.086 57.895 11.57 0.00 34.28 3.66
4732 4980 0.602905 GGTGAGGACCGAAACACTGG 60.603 60.000 11.57 0.00 34.28 4.00
4733 4981 0.106149 GTGAGGACCGAAACACTGGT 59.894 55.000 0.00 0.00 42.42 4.00
4749 4997 4.287766 ACTGGTCAGTGAAATAGGGAAC 57.712 45.455 2.46 0.00 40.75 3.62
4750 4998 3.009143 ACTGGTCAGTGAAATAGGGAACC 59.991 47.826 2.46 0.00 45.85 3.62
4808 5056 3.060000 ATCCGTCCGCAGACACGA 61.060 61.111 0.20 0.00 43.73 4.35
4913 5183 6.764085 ACGACCGGATTTCATATAAACATGAA 59.236 34.615 9.46 0.00 41.90 2.57
5014 5302 2.675075 CGCCCATTCCCCGTGTTT 60.675 61.111 0.00 0.00 0.00 2.83
5051 5361 2.147150 GAACTGAAGCTTCGCCTTCTT 58.853 47.619 21.11 5.98 41.36 2.52
5157 5534 3.869272 GGCTGCCGATGTTGAGCG 61.869 66.667 1.35 0.00 31.89 5.03
5246 5626 1.276421 GGCACTACTCTTCCTTGCTGA 59.724 52.381 0.00 0.00 33.55 4.26
5371 5774 2.038975 TCGCCCTCCTTGTAGGCT 59.961 61.111 0.00 0.00 44.84 4.58
5381 5787 0.984230 CTTGTAGGCTTCCTCCACCA 59.016 55.000 0.00 0.00 34.61 4.17
5587 6091 0.679640 CATGTGTAATGGGCACGGGT 60.680 55.000 0.00 0.00 39.53 5.28
5750 6304 3.948719 GGTGTCAGCCCGTCCCAA 61.949 66.667 0.00 0.00 0.00 4.12
5774 6328 1.926426 CTTTGGCGGGGGAGGAATCT 61.926 60.000 0.00 0.00 0.00 2.40
5786 6340 2.635427 GGAGGAATCTATGGTGGGAGTC 59.365 54.545 0.00 0.00 0.00 3.36
5792 6346 1.663379 CTATGGTGGGAGTCGTGCGA 61.663 60.000 0.00 0.00 0.00 5.10
5923 6922 4.653888 CACGCGGGGGAGGGTTTT 62.654 66.667 12.47 0.00 34.98 2.43
5924 6923 3.893399 ACGCGGGGGAGGGTTTTT 61.893 61.111 12.47 0.00 33.28 1.94
5925 6924 3.060000 CGCGGGGGAGGGTTTTTC 61.060 66.667 0.00 0.00 0.00 2.29
5985 6984 0.884704 GTTCAGACTCCCGCAAAGCA 60.885 55.000 0.00 0.00 0.00 3.91
5986 6985 0.179032 TTCAGACTCCCGCAAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
5987 6986 0.179032 TCAGACTCCCGCAAAGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
5988 6987 0.239347 CAGACTCCCGCAAAGCAAAG 59.761 55.000 0.00 0.00 0.00 2.77
6062 7061 3.214123 CCGCGGACCGATACAGGA 61.214 66.667 24.07 0.00 40.02 3.86
6065 7064 2.420568 GCGGACCGATACAGGACCA 61.421 63.158 20.50 0.00 44.55 4.02
6104 7103 4.963878 CGGAGGGAGGTTTGATGG 57.036 61.111 0.00 0.00 0.00 3.51
6105 7104 1.991230 CGGAGGGAGGTTTGATGGT 59.009 57.895 0.00 0.00 0.00 3.55
6106 7105 0.107654 CGGAGGGAGGTTTGATGGTC 60.108 60.000 0.00 0.00 0.00 4.02
6107 7106 0.107654 GGAGGGAGGTTTGATGGTCG 60.108 60.000 0.00 0.00 0.00 4.79
6108 7107 0.107654 GAGGGAGGTTTGATGGTCGG 60.108 60.000 0.00 0.00 0.00 4.79
6109 7108 1.749258 GGGAGGTTTGATGGTCGGC 60.749 63.158 0.00 0.00 0.00 5.54
6110 7109 2.106683 GGAGGTTTGATGGTCGGCG 61.107 63.158 0.00 0.00 0.00 6.46
6111 7110 1.375523 GAGGTTTGATGGTCGGCGT 60.376 57.895 6.85 0.00 0.00 5.68
6112 7111 0.953960 GAGGTTTGATGGTCGGCGTT 60.954 55.000 6.85 0.00 0.00 4.84
6113 7112 1.209127 GGTTTGATGGTCGGCGTTG 59.791 57.895 6.85 0.00 0.00 4.10
6114 7113 1.209127 GTTTGATGGTCGGCGTTGG 59.791 57.895 6.85 0.00 0.00 3.77
6115 7114 1.071642 TTTGATGGTCGGCGTTGGA 59.928 52.632 6.85 0.00 0.00 3.53
6116 7115 0.953471 TTTGATGGTCGGCGTTGGAG 60.953 55.000 6.85 0.00 0.00 3.86
6117 7116 1.822114 TTGATGGTCGGCGTTGGAGA 61.822 55.000 6.85 0.00 0.00 3.71
6118 7117 1.144057 GATGGTCGGCGTTGGAGAT 59.856 57.895 6.85 0.00 0.00 2.75
6119 7118 1.153369 ATGGTCGGCGTTGGAGATG 60.153 57.895 6.85 0.00 0.00 2.90
6120 7119 3.195698 GGTCGGCGTTGGAGATGC 61.196 66.667 6.85 0.00 39.65 3.91
6312 7315 4.923871 TCATTAAAGCTCGACAAGTCAGTC 59.076 41.667 0.72 0.00 35.19 3.51
6390 7393 0.108138 CCCGAGGTCTCACCATTGAC 60.108 60.000 0.00 0.00 41.95 3.18
6552 7555 1.750399 CCCTCCAATTCAGGCACCG 60.750 63.158 0.00 0.00 0.00 4.94
6790 7793 0.251608 GGCACATACCACACCCCTTT 60.252 55.000 0.00 0.00 0.00 3.11
6827 7839 7.148869 GGTGAATTTTCTAACAAAATACGCCAC 60.149 37.037 0.00 0.00 30.38 5.01
6828 7840 6.579292 TGAATTTTCTAACAAAATACGCCACG 59.421 34.615 0.00 0.00 30.38 4.94
6829 7841 3.458779 TTCTAACAAAATACGCCACGC 57.541 42.857 0.00 0.00 0.00 5.34
6831 7843 2.413796 TCTAACAAAATACGCCACGCAG 59.586 45.455 0.00 0.00 0.00 5.18
6833 7845 0.515564 ACAAAATACGCCACGCAGTC 59.484 50.000 0.00 0.00 41.61 3.51
6835 7847 0.604243 AAAATACGCCACGCAGTCCA 60.604 50.000 0.00 0.00 41.61 4.02
6836 7848 0.604243 AAATACGCCACGCAGTCCAA 60.604 50.000 0.00 0.00 41.61 3.53
6837 7849 0.604243 AATACGCCACGCAGTCCAAA 60.604 50.000 0.00 0.00 41.61 3.28
6838 7850 1.019278 ATACGCCACGCAGTCCAAAG 61.019 55.000 0.00 0.00 41.61 2.77
6839 7851 2.372040 TACGCCACGCAGTCCAAAGT 62.372 55.000 0.00 0.00 41.61 2.66
6840 7852 2.542907 CGCCACGCAGTCCAAAGTT 61.543 57.895 0.00 0.00 41.61 2.66
6841 7853 1.225376 CGCCACGCAGTCCAAAGTTA 61.225 55.000 0.00 0.00 41.61 2.24
6842 7854 0.948678 GCCACGCAGTCCAAAGTTAA 59.051 50.000 0.00 0.00 41.61 2.01
6843 7855 1.334689 GCCACGCAGTCCAAAGTTAAC 60.335 52.381 0.00 0.00 41.61 2.01
6844 7856 1.265905 CCACGCAGTCCAAAGTTAACC 59.734 52.381 0.88 0.00 41.61 2.85
6845 7857 1.265905 CACGCAGTCCAAAGTTAACCC 59.734 52.381 0.88 0.00 41.61 4.11
6919 7931 0.252197 ATGCTAAGGGGGAACGACAC 59.748 55.000 0.00 0.00 0.00 3.67
7125 8152 6.018994 CGGGTAACTTCATTACACTGAATAGC 60.019 42.308 0.00 0.00 43.99 2.97
7159 8186 9.031537 TGTCAGTATTATACCTTGTCTTGAGAA 57.968 33.333 0.00 0.00 0.00 2.87
7168 8195 3.520569 CTTGTCTTGAGAAGAGCCTAGC 58.479 50.000 1.83 0.00 38.41 3.42
7363 8392 5.493735 CCATAAGTTTCTTTCGCTCGATTC 58.506 41.667 0.00 0.00 0.00 2.52
7467 8505 2.636830 CTGAAAGCTCTGGTGGTATGG 58.363 52.381 0.00 0.00 0.00 2.74
7537 8575 4.521146 AGGATTACAGCACTCCATCTTTG 58.479 43.478 0.00 0.00 0.00 2.77
7671 8710 8.243426 TGGTCATGTTTTCTATTTAATGCAGAC 58.757 33.333 0.00 0.00 0.00 3.51
7680 8719 5.977725 TCTATTTAATGCAGACGTGTAGCTC 59.022 40.000 0.00 0.00 0.00 4.09
7691 8730 3.537580 ACGTGTAGCTCTTTTTGTTCCA 58.462 40.909 0.00 0.00 0.00 3.53
7855 8894 2.231964 TCTAACCACACCGCGATAAACT 59.768 45.455 8.23 0.00 0.00 2.66
7856 8895 1.153353 AACCACACCGCGATAAACTG 58.847 50.000 8.23 0.00 0.00 3.16
7875 8914 1.281867 TGTATTAGCAGGCAAGGCTGT 59.718 47.619 22.29 12.87 42.62 4.40
7904 8943 3.182967 GAGGAGATTGAGTTACAGCGTG 58.817 50.000 0.00 0.00 0.00 5.34
7933 8972 4.022416 GGACAGCACATCAAATAACCACAA 60.022 41.667 0.00 0.00 0.00 3.33
7934 8973 5.336690 GGACAGCACATCAAATAACCACAAT 60.337 40.000 0.00 0.00 0.00 2.71
7950 8989 3.306989 CCACAATGAGGAAGAGCAGTACA 60.307 47.826 0.00 0.00 0.00 2.90
7964 9003 2.376109 CAGTACATCACCCTAGTCCGT 58.624 52.381 0.00 0.00 0.00 4.69
7976 9015 2.358267 CCTAGTCCGTACATCACCAGAC 59.642 54.545 0.00 0.00 0.00 3.51
7991 9030 2.323599 CCAGACTATCCTGATGGCAGA 58.676 52.381 0.00 0.00 45.17 4.26
8000 9039 2.747460 GATGGCAGAGCAACCGCA 60.747 61.111 0.00 0.00 42.27 5.69
8016 9055 1.069227 CCGCACTGCTAAACTGGAAAC 60.069 52.381 0.00 0.00 0.00 2.78
8082 9121 3.483421 CTCCTCTTATGCATGGCAATCA 58.517 45.455 10.16 0.00 43.62 2.57
8147 9186 0.241749 TGGTGCGACGAAGAATACGT 59.758 50.000 0.00 0.00 46.58 3.57
8177 9216 2.880629 TAGGGCAGAGAGACTGGGGC 62.881 65.000 0.00 0.00 45.82 5.80
8181 9220 1.305633 CAGAGAGACTGGGGCTCCA 60.306 63.158 4.49 4.49 42.39 3.86
8192 9231 2.124024 GGCTCCATGATGCTGCCA 60.124 61.111 17.72 0.00 42.79 4.92
8193 9232 2.487532 GGCTCCATGATGCTGCCAC 61.488 63.158 17.72 0.00 42.79 5.01
8292 9331 1.522092 CCTAACAGAGCGATGCCCA 59.478 57.895 0.00 0.00 0.00 5.36
8364 9403 1.302907 ACCTTGAAGCCCTGATGGAT 58.697 50.000 0.00 0.00 35.39 3.41
8391 9430 5.301805 AGTTTTTGTGAAGGAATGTACAGGG 59.698 40.000 0.33 0.00 0.00 4.45
8397 9436 2.969821 AGGAATGTACAGGGCAAACA 57.030 45.000 0.33 0.00 0.00 2.83
8635 9674 6.641723 GTCACTGTACTAGAGAAGTTTCAACC 59.358 42.308 0.00 0.00 39.80 3.77
8657 9696 4.553323 CACTGCAATTTCTTGAGGGAAAG 58.447 43.478 0.00 0.00 38.38 2.62
8688 9727 6.915300 TGCTGTTTGAACATGTGTAATGTAAC 59.085 34.615 0.00 0.00 38.41 2.50
8689 9728 6.915300 GCTGTTTGAACATGTGTAATGTAACA 59.085 34.615 0.00 3.34 38.41 2.41
8690 9729 7.594758 GCTGTTTGAACATGTGTAATGTAACAT 59.405 33.333 0.00 0.00 38.41 2.71
8691 9730 9.117145 CTGTTTGAACATGTGTAATGTAACATC 57.883 33.333 0.00 0.00 38.41 3.06
8692 9731 8.845227 TGTTTGAACATGTGTAATGTAACATCT 58.155 29.630 0.00 0.00 34.81 2.90
8772 9811 2.232756 TGTGCAGCACGAGTTTTCTA 57.767 45.000 20.67 0.00 37.14 2.10
8773 9812 2.135139 TGTGCAGCACGAGTTTTCTAG 58.865 47.619 20.67 0.00 37.14 2.43
8774 9813 2.135933 GTGCAGCACGAGTTTTCTAGT 58.864 47.619 10.47 0.00 36.24 2.57
8775 9814 3.243602 TGTGCAGCACGAGTTTTCTAGTA 60.244 43.478 20.67 0.00 37.14 1.82
8776 9815 3.365220 GTGCAGCACGAGTTTTCTAGTAG 59.635 47.826 10.47 0.00 34.17 2.57
8777 9816 3.254903 TGCAGCACGAGTTTTCTAGTAGA 59.745 43.478 0.00 0.00 34.17 2.59
8778 9817 4.082190 TGCAGCACGAGTTTTCTAGTAGAT 60.082 41.667 0.00 0.00 34.17 1.98
8779 9818 4.266502 GCAGCACGAGTTTTCTAGTAGATG 59.733 45.833 0.00 0.00 34.17 2.90
8781 9820 5.287274 CAGCACGAGTTTTCTAGTAGATGTG 59.713 44.000 0.00 5.10 34.17 3.21
8782 9821 5.047943 AGCACGAGTTTTCTAGTAGATGTGT 60.048 40.000 0.00 0.00 34.17 3.72
8783 9822 5.061064 GCACGAGTTTTCTAGTAGATGTGTG 59.939 44.000 0.00 6.04 34.17 3.82
8869 10054 6.053650 GGTTAGGATGGGATGTACAGTAAAC 58.946 44.000 0.33 0.00 0.00 2.01
8950 10138 3.371063 CTTGGTGCTGCTGCCAGG 61.371 66.667 13.47 12.18 39.54 4.45
9011 10199 5.128991 GGAATCTGCTAGGTAGGTAGTGTTT 59.871 44.000 0.00 0.00 0.00 2.83
9012 10200 6.351966 GGAATCTGCTAGGTAGGTAGTGTTTT 60.352 42.308 0.00 0.00 0.00 2.43
9032 10220 1.593196 TTTCAGACTTTGGGCAGTCG 58.407 50.000 0.00 0.00 46.85 4.18
9035 10223 1.004440 AGACTTTGGGCAGTCGCTC 60.004 57.895 0.00 0.00 46.85 5.03
9047 10235 1.587613 GTCGCTCGCTCATGAGGAC 60.588 63.158 23.89 17.08 36.47 3.85
9259 10448 9.474920 GTAAAATTCAGTTTCATGACAATTGGA 57.525 29.630 10.83 0.00 0.00 3.53
9271 10460 3.066342 TGACAATTGGAAAAACGGCGTAA 59.934 39.130 15.20 2.34 0.00 3.18
9272 10461 4.043037 ACAATTGGAAAAACGGCGTAAA 57.957 36.364 15.20 1.71 0.00 2.01
9283 10472 1.226295 GGCGTAAATTGAGGCGTGC 60.226 57.895 1.43 0.00 0.00 5.34
9288 10477 3.607439 CGTAAATTGAGGCGTGCATTAG 58.393 45.455 0.00 0.00 0.00 1.73
9310 10499 1.162800 GGTCAAGCATCTCGATGGGC 61.163 60.000 8.81 0.00 39.16 5.36
9313 10502 3.390183 AAGCATCTCGATGGGCGCA 62.390 57.895 10.83 5.70 39.16 6.09
9346 10535 3.251004 CGAAAGCTAGTTTCTTGCCACTT 59.749 43.478 12.75 0.00 42.28 3.16
9351 10540 5.130350 AGCTAGTTTCTTGCCACTTTGTAA 58.870 37.500 0.00 0.00 33.03 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.797642 AGATGCATAAAGGATAAACATCACATA 57.202 29.630 0.00 0.00 35.91 2.29
71 72 5.479306 ACGCCGACAATCTTATAATGCTAT 58.521 37.500 0.00 0.00 0.00 2.97
266 269 0.601558 GTGCTCGGTGTCCAAGTCTA 59.398 55.000 0.00 0.00 0.00 2.59
269 272 1.069765 CAGTGCTCGGTGTCCAAGT 59.930 57.895 0.00 0.00 0.00 3.16
308 311 3.445805 TCAGAAAAATAAATGACCCGGCC 59.554 43.478 0.00 0.00 0.00 6.13
355 360 1.063027 CGACATTCATGCAAGCACGAT 59.937 47.619 0.00 0.00 0.00 3.73
375 380 4.326009 CGGTGCATTTTATACAAAGTTGGC 59.674 41.667 0.00 0.00 0.00 4.52
379 384 5.699097 ACACGGTGCATTTTATACAAAGT 57.301 34.783 8.30 0.00 0.00 2.66
446 452 4.354939 TTGCCAATGTTGCCCGCG 62.355 61.111 0.00 0.00 0.00 6.46
483 489 2.981859 ATAAAGGGATCAGTTCGCGT 57.018 45.000 5.77 0.00 41.96 6.01
498 504 4.574892 TCTTGCACTCGTCCATGAATAAA 58.425 39.130 0.00 0.00 0.00 1.40
499 505 4.183865 CTCTTGCACTCGTCCATGAATAA 58.816 43.478 0.00 0.00 0.00 1.40
501 507 2.625737 CTCTTGCACTCGTCCATGAAT 58.374 47.619 0.00 0.00 0.00 2.57
506 512 0.756294 TTTCCTCTTGCACTCGTCCA 59.244 50.000 0.00 0.00 0.00 4.02
518 524 4.969484 ACGACAACCTGTAAATTTCCTCT 58.031 39.130 0.00 0.00 0.00 3.69
580 586 6.366332 GCTAGTTACATGCACATACCTATGAC 59.634 42.308 0.00 0.00 37.15 3.06
717 738 1.040646 TCACACCTCAGACCACACTC 58.959 55.000 0.00 0.00 0.00 3.51
754 775 3.999663 CTCCAACAATCTCTTGTCTGGAC 59.000 47.826 13.49 0.00 44.83 4.02
755 776 3.648067 ACTCCAACAATCTCTTGTCTGGA 59.352 43.478 15.25 15.25 44.83 3.86
756 777 3.750130 CACTCCAACAATCTCTTGTCTGG 59.250 47.826 10.69 10.69 44.83 3.86
757 778 3.750130 CCACTCCAACAATCTCTTGTCTG 59.250 47.826 0.00 0.00 44.83 3.51
768 789 7.123355 AGAAAATTTTCATCCACTCCAACAA 57.877 32.000 28.00 0.00 39.61 2.83
769 790 6.729690 AGAAAATTTTCATCCACTCCAACA 57.270 33.333 28.00 0.00 39.61 3.33
770 791 9.143631 CATAAGAAAATTTTCATCCACTCCAAC 57.856 33.333 28.00 2.10 39.61 3.77
867 971 5.735892 GGCCGAACAAACGATTTCTATAAAC 59.264 40.000 0.00 0.00 35.09 2.01
871 975 2.681344 GGGCCGAACAAACGATTTCTAT 59.319 45.455 0.00 0.00 35.09 1.98
890 994 0.322816 CATGATTAGGATGGGGCGGG 60.323 60.000 0.00 0.00 0.00 6.13
894 998 0.962356 GGCGCATGATTAGGATGGGG 60.962 60.000 10.83 0.00 35.01 4.96
1046 1150 4.101448 ACGAGGAGGGCATGGTGC 62.101 66.667 0.00 0.00 44.08 5.01
1187 1291 3.740397 CGTACCTCCGCACGGACA 61.740 66.667 7.89 0.00 39.76 4.02
1248 1352 4.531426 ATCGCCGCCTCCTCTCCT 62.531 66.667 0.00 0.00 0.00 3.69
1343 1447 3.242478 CGTGACGCAACCAGTAAAAGAAA 60.242 43.478 0.00 0.00 0.00 2.52
1405 1509 1.445582 CTACGTTGACCTGGCCGTC 60.446 63.158 0.00 0.11 34.95 4.79
1407 1511 2.813908 GCTACGTTGACCTGGCCG 60.814 66.667 0.00 0.00 0.00 6.13
1410 1514 2.754946 TTTAGGCTACGTTGACCTGG 57.245 50.000 17.97 0.00 34.92 4.45
1413 1517 6.332630 TGTAACTATTTAGGCTACGTTGACC 58.667 40.000 0.00 0.80 0.00 4.02
1415 1519 7.094248 TGACTGTAACTATTTAGGCTACGTTGA 60.094 37.037 0.00 0.00 0.00 3.18
1435 1539 9.520515 AATCTTGTATTCCTAAATTGTGACTGT 57.479 29.630 0.00 0.00 0.00 3.55
1436 1540 9.778993 CAATCTTGTATTCCTAAATTGTGACTG 57.221 33.333 0.00 0.00 0.00 3.51
1437 1541 8.462016 GCAATCTTGTATTCCTAAATTGTGACT 58.538 33.333 0.00 0.00 0.00 3.41
1462 1569 4.568152 TTCTGTTAAGAACAAGCAAGGC 57.432 40.909 0.00 0.00 41.61 4.35
1464 1571 7.992180 ACAAATTCTGTTAAGAACAAGCAAG 57.008 32.000 0.00 0.00 45.12 4.01
1481 1588 9.671279 AGGGGATCATTTTGAAAATACAAATTC 57.329 29.630 2.42 0.00 39.09 2.17
1494 1606 1.856629 ACAGCCAGGGGATCATTTTG 58.143 50.000 0.00 0.00 0.00 2.44
1499 1611 1.204146 GAAGTACAGCCAGGGGATCA 58.796 55.000 0.00 0.00 0.00 2.92
1524 1636 9.621629 TCCTAAAGTTTAGTGATTGTTTTGAGA 57.378 29.630 18.98 4.21 0.00 3.27
1527 1639 9.626045 GGATCCTAAAGTTTAGTGATTGTTTTG 57.374 33.333 18.98 2.78 0.00 2.44
1532 1646 8.567285 AAGTGGATCCTAAAGTTTAGTGATTG 57.433 34.615 18.98 5.86 0.00 2.67
1707 1821 2.197605 TCCCGACAACAGTCAGCGA 61.198 57.895 0.00 0.00 32.50 4.93
1879 1993 2.104963 GACACCTTCTGAGACAAAGGGT 59.895 50.000 3.89 0.00 45.27 4.34
1930 2044 4.916041 TCTGATGAGGTCAAGGAAACAT 57.084 40.909 0.00 0.00 36.14 2.71
2084 2198 4.098914 ACAGAGGGTAACAAAGCATTCA 57.901 40.909 0.00 0.00 39.74 2.57
2181 2295 6.640518 TCATAACCTTGTCCTTGATAGACAC 58.359 40.000 0.00 0.00 43.70 3.67
2198 2312 5.722021 AACTGACCACCATTTTCATAACC 57.278 39.130 0.00 0.00 0.00 2.85
2352 2466 1.956629 GATGCTGCAGCCTGCCAATT 61.957 55.000 34.64 9.88 44.23 2.32
2354 2468 3.066190 GATGCTGCAGCCTGCCAA 61.066 61.111 34.64 16.51 44.23 4.52
2703 2818 9.737844 ATAATGTGGAATAAACCATTTGCTTTT 57.262 25.926 0.00 0.00 42.17 2.27
2822 2938 6.136071 GCATATTTTACGACATGATGACCAC 58.864 40.000 0.00 0.00 0.00 4.16
2823 2939 5.238432 GGCATATTTTACGACATGATGACCA 59.762 40.000 0.00 0.00 0.00 4.02
2833 2957 4.806342 AATCCACGGCATATTTTACGAC 57.194 40.909 0.00 0.00 0.00 4.34
2994 3118 5.848406 AGTAGGTGCAGATAAGCTCATTAC 58.152 41.667 0.00 0.00 34.99 1.89
3141 3353 4.250464 CTCGGTTGGCACTAAATGAGTAA 58.750 43.478 0.00 0.00 35.64 2.24
3142 3354 3.259876 ACTCGGTTGGCACTAAATGAGTA 59.740 43.478 0.00 0.00 35.64 2.59
3143 3355 2.038557 ACTCGGTTGGCACTAAATGAGT 59.961 45.455 0.00 0.00 39.82 3.41
3144 3356 2.699954 ACTCGGTTGGCACTAAATGAG 58.300 47.619 0.00 0.00 0.00 2.90
3145 3357 2.851263 ACTCGGTTGGCACTAAATGA 57.149 45.000 0.00 0.00 0.00 2.57
3146 3358 2.159707 CGAACTCGGTTGGCACTAAATG 60.160 50.000 0.00 0.00 35.37 2.32
3147 3359 2.073816 CGAACTCGGTTGGCACTAAAT 58.926 47.619 0.00 0.00 35.37 1.40
3148 3360 1.504359 CGAACTCGGTTGGCACTAAA 58.496 50.000 0.00 0.00 35.37 1.85
3149 3361 0.947180 GCGAACTCGGTTGGCACTAA 60.947 55.000 15.23 0.00 44.46 2.24
3188 3400 7.839680 ACTTTTCAATATTCAGTGGGAAAGT 57.160 32.000 4.18 4.18 39.39 2.66
3222 3434 1.614996 TTTTGTCGTGCATCATGGGT 58.385 45.000 0.00 0.00 0.00 4.51
3395 3611 3.700538 TCAATTGGCAGCTAAAGTCCAT 58.299 40.909 5.42 0.00 0.00 3.41
3492 3713 2.132402 GTTGAAAACCACGCGCATG 58.868 52.632 5.73 0.58 42.21 4.06
3838 4060 7.269514 AGGTTCCCTATTTCACTGACCAGTG 62.270 48.000 20.79 20.79 45.47 3.66
3839 4061 3.009143 GGTTCCCTATTTCACTGACCAGT 59.991 47.826 0.00 0.00 43.61 4.00
3840 4062 3.264450 AGGTTCCCTATTTCACTGACCAG 59.736 47.826 0.00 0.00 28.47 4.00
3841 4063 3.256704 AGGTTCCCTATTTCACTGACCA 58.743 45.455 0.00 0.00 28.47 4.02
3842 4064 4.302559 AAGGTTCCCTATTTCACTGACC 57.697 45.455 0.00 0.00 31.13 4.02
3843 4065 5.429130 CCTAAGGTTCCCTATTTCACTGAC 58.571 45.833 0.00 0.00 31.13 3.51
3844 4066 4.473559 CCCTAAGGTTCCCTATTTCACTGA 59.526 45.833 0.00 0.00 31.13 3.41
3845 4067 4.781934 CCCTAAGGTTCCCTATTTCACTG 58.218 47.826 0.00 0.00 31.13 3.66
3846 4068 3.202373 GCCCTAAGGTTCCCTATTTCACT 59.798 47.826 0.00 0.00 31.13 3.41
3847 4069 3.053917 TGCCCTAAGGTTCCCTATTTCAC 60.054 47.826 0.00 0.00 31.13 3.18
3848 4070 3.194620 TGCCCTAAGGTTCCCTATTTCA 58.805 45.455 0.00 0.00 31.13 2.69
3849 4071 3.945640 TGCCCTAAGGTTCCCTATTTC 57.054 47.619 0.00 0.00 31.13 2.17
3850 4072 4.055094 AGATGCCCTAAGGTTCCCTATTT 58.945 43.478 0.00 0.00 31.13 1.40
3851 4073 3.653352 GAGATGCCCTAAGGTTCCCTATT 59.347 47.826 0.00 0.00 31.13 1.73
3852 4074 3.252351 GAGATGCCCTAAGGTTCCCTAT 58.748 50.000 0.00 0.00 31.13 2.57
3853 4075 2.690840 GAGATGCCCTAAGGTTCCCTA 58.309 52.381 0.00 0.00 31.13 3.53
3854 4076 1.512735 GAGATGCCCTAAGGTTCCCT 58.487 55.000 0.00 0.00 33.87 4.20
3855 4077 0.474614 GGAGATGCCCTAAGGTTCCC 59.525 60.000 0.00 0.00 34.57 3.97
3856 4078 1.213296 TGGAGATGCCCTAAGGTTCC 58.787 55.000 0.00 0.00 34.97 3.62
3857 4079 2.644676 GTTGGAGATGCCCTAAGGTTC 58.355 52.381 0.00 0.00 34.97 3.62
3858 4080 1.065418 CGTTGGAGATGCCCTAAGGTT 60.065 52.381 0.00 0.00 34.97 3.50
3859 4081 0.541863 CGTTGGAGATGCCCTAAGGT 59.458 55.000 0.00 0.00 34.97 3.50
3860 4082 0.179045 CCGTTGGAGATGCCCTAAGG 60.179 60.000 0.00 0.00 34.97 2.69
3861 4083 0.830648 TCCGTTGGAGATGCCCTAAG 59.169 55.000 0.00 0.00 34.97 2.18
3862 4084 1.281419 TTCCGTTGGAGATGCCCTAA 58.719 50.000 0.00 0.00 34.97 2.69
3863 4085 1.065709 GTTTCCGTTGGAGATGCCCTA 60.066 52.381 0.00 0.00 34.97 3.53
3880 4102 0.973632 GGGAGGAAATTTGCGGGTTT 59.026 50.000 3.87 0.00 0.00 3.27
3998 4222 3.007074 TGCTTATATGAAATCCGGCCGTA 59.993 43.478 26.12 9.32 0.00 4.02
4047 4292 1.807886 CGGACTAGCACCGCTTAGT 59.192 57.895 14.35 0.00 43.74 2.24
4048 4293 4.711980 CGGACTAGCACCGCTTAG 57.288 61.111 14.35 0.00 43.74 2.18
4169 4417 2.817396 GTTGGAGAGCGCTGAGGC 60.817 66.667 18.48 0.00 0.00 4.70
4170 4418 1.153667 GAGTTGGAGAGCGCTGAGG 60.154 63.158 18.48 0.00 0.00 3.86
4171 4419 1.153667 GGAGTTGGAGAGCGCTGAG 60.154 63.158 18.48 0.00 0.00 3.35
4172 4420 2.973899 GGAGTTGGAGAGCGCTGA 59.026 61.111 18.48 0.00 0.00 4.26
4173 4421 2.507992 CGGAGTTGGAGAGCGCTG 60.508 66.667 18.48 0.00 0.00 5.18
4174 4422 4.443266 GCGGAGTTGGAGAGCGCT 62.443 66.667 11.27 11.27 0.00 5.92
4176 4424 3.708220 GAGGCGGAGTTGGAGAGCG 62.708 68.421 0.00 0.00 0.00 5.03
4177 4425 2.185608 GAGGCGGAGTTGGAGAGC 59.814 66.667 0.00 0.00 0.00 4.09
4178 4426 2.896443 GGAGGCGGAGTTGGAGAG 59.104 66.667 0.00 0.00 0.00 3.20
4179 4427 3.068691 CGGAGGCGGAGTTGGAGA 61.069 66.667 0.00 0.00 0.00 3.71
4180 4428 4.148825 CCGGAGGCGGAGTTGGAG 62.149 72.222 0.00 0.00 46.14 3.86
4192 4440 0.749649 CACTTCCCAGATCTCCGGAG 59.250 60.000 26.32 26.32 0.00 4.63
4193 4441 0.335019 TCACTTCCCAGATCTCCGGA 59.665 55.000 2.93 2.93 0.00 5.14
4194 4442 1.137872 CTTCACTTCCCAGATCTCCGG 59.862 57.143 0.00 0.00 0.00 5.14
4195 4443 1.827969 ACTTCACTTCCCAGATCTCCG 59.172 52.381 0.00 0.00 0.00 4.63
4196 4444 3.008485 ACAACTTCACTTCCCAGATCTCC 59.992 47.826 0.00 0.00 0.00 3.71
4197 4445 4.278975 ACAACTTCACTTCCCAGATCTC 57.721 45.455 0.00 0.00 0.00 2.75
4198 4446 4.646572 GAACAACTTCACTTCCCAGATCT 58.353 43.478 0.00 0.00 0.00 2.75
4199 4447 3.433615 CGAACAACTTCACTTCCCAGATC 59.566 47.826 0.00 0.00 0.00 2.75
4200 4448 3.403038 CGAACAACTTCACTTCCCAGAT 58.597 45.455 0.00 0.00 0.00 2.90
4201 4449 2.833794 CGAACAACTTCACTTCCCAGA 58.166 47.619 0.00 0.00 0.00 3.86
4202 4450 1.264288 GCGAACAACTTCACTTCCCAG 59.736 52.381 0.00 0.00 0.00 4.45
4203 4451 1.305201 GCGAACAACTTCACTTCCCA 58.695 50.000 0.00 0.00 0.00 4.37
4204 4452 0.591659 GGCGAACAACTTCACTTCCC 59.408 55.000 0.00 0.00 0.00 3.97
4205 4453 1.531578 GAGGCGAACAACTTCACTTCC 59.468 52.381 0.00 0.00 0.00 3.46
4206 4454 1.531578 GGAGGCGAACAACTTCACTTC 59.468 52.381 0.00 0.00 0.00 3.01
4207 4455 1.134220 TGGAGGCGAACAACTTCACTT 60.134 47.619 0.00 0.00 0.00 3.16
4208 4456 0.468226 TGGAGGCGAACAACTTCACT 59.532 50.000 0.00 0.00 0.00 3.41
4209 4457 0.586802 GTGGAGGCGAACAACTTCAC 59.413 55.000 0.00 0.00 36.17 3.18
4210 4458 0.878523 CGTGGAGGCGAACAACTTCA 60.879 55.000 0.00 0.00 0.00 3.02
4211 4459 0.878961 ACGTGGAGGCGAACAACTTC 60.879 55.000 0.00 0.00 35.59 3.01
4212 4460 0.878961 GACGTGGAGGCGAACAACTT 60.879 55.000 0.00 0.00 35.59 2.66
4213 4461 1.300697 GACGTGGAGGCGAACAACT 60.301 57.895 0.00 0.00 35.59 3.16
4214 4462 3.241177 GACGTGGAGGCGAACAAC 58.759 61.111 0.00 0.00 35.59 3.32
4236 4484 1.434696 CAGCCAATTAGCCGCTTGG 59.565 57.895 0.00 1.05 43.93 3.61
4237 4485 1.226773 GCAGCCAATTAGCCGCTTG 60.227 57.895 0.00 0.00 33.27 4.01
4238 4486 2.418083 GGCAGCCAATTAGCCGCTT 61.418 57.895 6.55 0.00 38.86 4.68
4239 4487 2.830370 GGCAGCCAATTAGCCGCT 60.830 61.111 6.55 0.00 38.86 5.52
4242 4490 1.103398 ACATCGGCAGCCAATTAGCC 61.103 55.000 13.30 0.00 44.89 3.93
4243 4491 0.740737 AACATCGGCAGCCAATTAGC 59.259 50.000 13.30 0.00 0.00 3.09
4244 4492 2.016318 TCAACATCGGCAGCCAATTAG 58.984 47.619 13.30 0.00 0.00 1.73
4245 4493 2.016318 CTCAACATCGGCAGCCAATTA 58.984 47.619 13.30 0.00 0.00 1.40
4246 4494 0.813184 CTCAACATCGGCAGCCAATT 59.187 50.000 13.30 0.00 0.00 2.32
4247 4495 1.660560 GCTCAACATCGGCAGCCAAT 61.661 55.000 13.30 0.00 0.00 3.16
4248 4496 2.334946 GCTCAACATCGGCAGCCAA 61.335 57.895 13.30 0.00 0.00 4.52
4249 4497 2.747460 GCTCAACATCGGCAGCCA 60.747 61.111 13.30 0.00 0.00 4.75
4250 4498 3.512516 GGCTCAACATCGGCAGCC 61.513 66.667 0.00 0.00 44.63 4.85
4251 4499 3.512516 GGGCTCAACATCGGCAGC 61.513 66.667 0.00 0.00 0.00 5.25
4252 4500 2.046023 TGGGCTCAACATCGGCAG 60.046 61.111 0.00 0.00 0.00 4.85
4253 4501 2.359850 GTGGGCTCAACATCGGCA 60.360 61.111 0.00 0.00 0.00 5.69
4254 4502 3.134127 GGTGGGCTCAACATCGGC 61.134 66.667 0.00 0.00 0.00 5.54
4255 4503 1.303236 TTGGTGGGCTCAACATCGG 60.303 57.895 4.39 0.00 40.73 4.18
4256 4504 1.926511 GCTTGGTGGGCTCAACATCG 61.927 60.000 4.39 0.09 40.73 3.84
4257 4505 0.610232 AGCTTGGTGGGCTCAACATC 60.610 55.000 4.39 0.00 40.73 3.06
4258 4506 0.178953 AAGCTTGGTGGGCTCAACAT 60.179 50.000 4.39 0.00 40.73 2.71
4259 4507 1.108727 CAAGCTTGGTGGGCTCAACA 61.109 55.000 19.14 0.00 39.11 3.33
4260 4508 1.662044 CAAGCTTGGTGGGCTCAAC 59.338 57.895 19.14 0.00 39.30 3.18
4261 4509 1.531365 CCAAGCTTGGTGGGCTCAA 60.531 57.895 33.46 0.00 43.43 3.02
4262 4510 2.115910 CCAAGCTTGGTGGGCTCA 59.884 61.111 33.46 0.00 43.43 4.26
4271 4519 1.300080 CCCAACAACGCCAAGCTTG 60.300 57.895 19.93 19.93 0.00 4.01
4272 4520 1.454847 TCCCAACAACGCCAAGCTT 60.455 52.632 0.00 0.00 0.00 3.74
4273 4521 1.898574 CTCCCAACAACGCCAAGCT 60.899 57.895 0.00 0.00 0.00 3.74
4274 4522 1.856265 CTCTCCCAACAACGCCAAGC 61.856 60.000 0.00 0.00 0.00 4.01
4275 4523 1.237285 CCTCTCCCAACAACGCCAAG 61.237 60.000 0.00 0.00 0.00 3.61
4276 4524 1.228124 CCTCTCCCAACAACGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
4277 4525 2.429930 CCTCTCCCAACAACGCCA 59.570 61.111 0.00 0.00 0.00 5.69
4278 4526 2.359975 CCCTCTCCCAACAACGCC 60.360 66.667 0.00 0.00 0.00 5.68
4279 4527 2.359975 CCCCTCTCCCAACAACGC 60.360 66.667 0.00 0.00 0.00 4.84
4280 4528 2.359975 GCCCCTCTCCCAACAACG 60.360 66.667 0.00 0.00 0.00 4.10
4281 4529 1.303643 CTGCCCCTCTCCCAACAAC 60.304 63.158 0.00 0.00 0.00 3.32
4282 4530 1.774217 ACTGCCCCTCTCCCAACAA 60.774 57.895 0.00 0.00 0.00 2.83
4283 4531 2.121963 ACTGCCCCTCTCCCAACA 60.122 61.111 0.00 0.00 0.00 3.33
4284 4532 2.352805 CACTGCCCCTCTCCCAAC 59.647 66.667 0.00 0.00 0.00 3.77
4285 4533 2.935481 CCACTGCCCCTCTCCCAA 60.935 66.667 0.00 0.00 0.00 4.12
4296 4544 3.635268 CTCCCAGGAAGGCCACTGC 62.635 68.421 5.01 0.00 36.29 4.40
4297 4545 2.673523 CTCCCAGGAAGGCCACTG 59.326 66.667 5.01 10.45 36.29 3.66
4298 4546 3.334054 GCTCCCAGGAAGGCCACT 61.334 66.667 5.01 0.00 36.29 4.00
4299 4547 4.432741 GGCTCCCAGGAAGGCCAC 62.433 72.222 5.01 0.00 43.59 5.01
4301 4549 3.651980 CTTGGCTCCCAGGAAGGCC 62.652 68.421 9.50 9.50 44.31 5.19
4302 4550 2.044551 CTTGGCTCCCAGGAAGGC 60.045 66.667 0.00 0.00 31.89 4.35
4303 4551 2.044551 GCTTGGCTCCCAGGAAGG 60.045 66.667 0.00 0.00 31.89 3.46
4304 4552 2.437359 CGCTTGGCTCCCAGGAAG 60.437 66.667 0.00 0.00 31.89 3.46
4305 4553 4.033776 CCGCTTGGCTCCCAGGAA 62.034 66.667 0.00 0.00 31.89 3.36
4315 4563 3.458163 TAGGTCTCCGCCGCTTGG 61.458 66.667 0.00 0.00 0.00 3.61
4316 4564 2.202756 GTAGGTCTCCGCCGCTTG 60.203 66.667 0.00 0.00 0.00 4.01
4317 4565 3.459063 GGTAGGTCTCCGCCGCTT 61.459 66.667 0.00 0.00 0.00 4.68
4323 4571 2.898920 TAGTGCCCGGTAGGTCTCCG 62.899 65.000 0.00 0.00 46.49 4.63
4324 4572 1.076485 TAGTGCCCGGTAGGTCTCC 60.076 63.158 0.00 0.00 38.26 3.71
4325 4573 0.395448 AGTAGTGCCCGGTAGGTCTC 60.395 60.000 0.00 0.00 38.26 3.36
4326 4574 0.395448 GAGTAGTGCCCGGTAGGTCT 60.395 60.000 0.00 0.00 38.26 3.85
4327 4575 0.395448 AGAGTAGTGCCCGGTAGGTC 60.395 60.000 0.00 0.00 38.26 3.85
4328 4576 0.040794 AAGAGTAGTGCCCGGTAGGT 59.959 55.000 0.00 0.00 38.26 3.08
4329 4577 0.745468 GAAGAGTAGTGCCCGGTAGG 59.255 60.000 0.00 0.00 39.47 3.18
4330 4578 0.745468 GGAAGAGTAGTGCCCGGTAG 59.255 60.000 0.00 0.00 0.00 3.18
4331 4579 0.333993 AGGAAGAGTAGTGCCCGGTA 59.666 55.000 0.00 0.00 0.00 4.02
4332 4580 0.971447 GAGGAAGAGTAGTGCCCGGT 60.971 60.000 0.00 0.00 0.00 5.28
4333 4581 1.817209 GAGGAAGAGTAGTGCCCGG 59.183 63.158 0.00 0.00 0.00 5.73
4334 4582 1.433879 CGAGGAAGAGTAGTGCCCG 59.566 63.158 0.00 0.00 0.00 6.13
4335 4583 1.142097 GCGAGGAAGAGTAGTGCCC 59.858 63.158 0.00 0.00 0.00 5.36
4336 4584 0.179124 CAGCGAGGAAGAGTAGTGCC 60.179 60.000 0.00 0.00 0.00 5.01
4337 4585 0.804156 GCAGCGAGGAAGAGTAGTGC 60.804 60.000 0.00 0.00 0.00 4.40
4338 4586 0.179124 GGCAGCGAGGAAGAGTAGTG 60.179 60.000 0.00 0.00 0.00 2.74
4339 4587 1.658686 CGGCAGCGAGGAAGAGTAGT 61.659 60.000 0.00 0.00 0.00 2.73
4340 4588 1.064946 CGGCAGCGAGGAAGAGTAG 59.935 63.158 0.00 0.00 0.00 2.57
4341 4589 2.415608 CCGGCAGCGAGGAAGAGTA 61.416 63.158 0.00 0.00 0.00 2.59
4342 4590 3.764466 CCGGCAGCGAGGAAGAGT 61.764 66.667 0.00 0.00 0.00 3.24
4367 4615 3.925238 GAAGCCGGCATGTACGCG 61.925 66.667 31.54 3.53 0.00 6.01
4368 4616 3.925238 CGAAGCCGGCATGTACGC 61.925 66.667 31.54 2.75 0.00 4.42
4369 4617 2.508439 ACGAAGCCGGCATGTACG 60.508 61.111 31.54 25.39 40.78 3.67
4370 4618 2.461110 CCACGAAGCCGGCATGTAC 61.461 63.158 31.54 13.32 40.78 2.90
4371 4619 2.125310 CCACGAAGCCGGCATGTA 60.125 61.111 31.54 0.00 40.78 2.29
4372 4620 4.329545 ACCACGAAGCCGGCATGT 62.330 61.111 31.54 20.70 40.78 3.21
4373 4621 3.499737 GACCACGAAGCCGGCATG 61.500 66.667 31.54 19.97 40.78 4.06
4407 4655 3.665675 AAGAGGACATCGGTGCGGC 62.666 63.158 0.00 0.00 40.77 6.53
4408 4656 1.519455 GAAGAGGACATCGGTGCGG 60.519 63.158 0.00 0.00 40.77 5.69
4409 4657 1.519455 GGAAGAGGACATCGGTGCG 60.519 63.158 0.00 0.00 40.77 5.34
4410 4658 0.179097 GAGGAAGAGGACATCGGTGC 60.179 60.000 0.00 0.00 35.26 5.01
4411 4659 0.461961 GGAGGAAGAGGACATCGGTG 59.538 60.000 0.00 0.00 0.00 4.94
4412 4660 0.336737 AGGAGGAAGAGGACATCGGT 59.663 55.000 0.00 0.00 0.00 4.69
4413 4661 1.036707 GAGGAGGAAGAGGACATCGG 58.963 60.000 0.00 0.00 0.00 4.18
4414 4662 0.665835 CGAGGAGGAAGAGGACATCG 59.334 60.000 0.00 0.00 0.00 3.84
4415 4663 1.679153 GACGAGGAGGAAGAGGACATC 59.321 57.143 0.00 0.00 0.00 3.06
4416 4664 1.770294 GACGAGGAGGAAGAGGACAT 58.230 55.000 0.00 0.00 0.00 3.06
4417 4665 0.677098 CGACGAGGAGGAAGAGGACA 60.677 60.000 0.00 0.00 0.00 4.02
4418 4666 1.378124 CCGACGAGGAGGAAGAGGAC 61.378 65.000 0.00 0.00 45.00 3.85
4419 4667 1.077644 CCGACGAGGAGGAAGAGGA 60.078 63.158 0.00 0.00 45.00 3.71
4420 4668 1.378124 GACCGACGAGGAGGAAGAGG 61.378 65.000 8.56 0.00 45.00 3.69
4421 4669 0.393267 AGACCGACGAGGAGGAAGAG 60.393 60.000 8.56 0.00 45.00 2.85
4422 4670 0.037877 AAGACCGACGAGGAGGAAGA 59.962 55.000 8.56 0.00 45.00 2.87
4423 4671 0.452585 GAAGACCGACGAGGAGGAAG 59.547 60.000 8.56 0.00 45.00 3.46
4424 4672 0.964358 GGAAGACCGACGAGGAGGAA 60.964 60.000 8.56 0.00 45.00 3.36
4425 4673 1.378250 GGAAGACCGACGAGGAGGA 60.378 63.158 8.56 0.00 45.00 3.71
4426 4674 2.416432 GGGAAGACCGACGAGGAGG 61.416 68.421 8.56 0.00 45.00 4.30
4427 4675 3.198582 GGGAAGACCGACGAGGAG 58.801 66.667 8.56 0.00 45.00 3.69
4437 4685 2.726822 AAGGCGGTGTTCGGGAAGAC 62.727 60.000 0.41 0.41 39.69 3.01
4438 4686 2.513259 AAGGCGGTGTTCGGGAAGA 61.513 57.895 0.00 0.00 39.69 2.87
4439 4687 2.032071 AAGGCGGTGTTCGGGAAG 59.968 61.111 0.00 0.00 39.69 3.46
4440 4688 2.281208 CAAGGCGGTGTTCGGGAA 60.281 61.111 0.00 0.00 39.69 3.97
4445 4693 3.056328 GAGGGCAAGGCGGTGTTC 61.056 66.667 0.00 0.00 0.00 3.18
4446 4694 4.660938 GGAGGGCAAGGCGGTGTT 62.661 66.667 0.00 0.00 0.00 3.32
4448 4696 4.785453 GAGGAGGGCAAGGCGGTG 62.785 72.222 0.00 0.00 0.00 4.94
4451 4699 4.821589 GACGAGGAGGGCAAGGCG 62.822 72.222 0.00 0.00 0.00 5.52
4452 4700 4.821589 CGACGAGGAGGGCAAGGC 62.822 72.222 0.00 0.00 0.00 4.35
4453 4701 4.821589 GCGACGAGGAGGGCAAGG 62.822 72.222 0.00 0.00 0.00 3.61
4454 4702 4.821589 GGCGACGAGGAGGGCAAG 62.822 72.222 0.00 0.00 0.00 4.01
4459 4707 4.824515 AGGAGGGCGACGAGGAGG 62.825 72.222 0.00 0.00 0.00 4.30
4460 4708 2.756283 AAGGAGGGCGACGAGGAG 60.756 66.667 0.00 0.00 0.00 3.69
4461 4709 2.488771 TACAAGGAGGGCGACGAGGA 62.489 60.000 0.00 0.00 0.00 3.71
4462 4710 2.005960 CTACAAGGAGGGCGACGAGG 62.006 65.000 0.00 0.00 0.00 4.63
4463 4711 1.433879 CTACAAGGAGGGCGACGAG 59.566 63.158 0.00 0.00 0.00 4.18
4464 4712 2.050350 CCTACAAGGAGGGCGACGA 61.050 63.158 0.00 0.00 37.67 4.20
4465 4713 2.494918 CCTACAAGGAGGGCGACG 59.505 66.667 0.00 0.00 37.67 5.12
4466 4714 2.187163 GCCTACAAGGAGGGCGAC 59.813 66.667 0.00 0.00 37.67 5.19
4469 4717 1.224870 GGAAGCCTACAAGGAGGGC 59.775 63.158 0.00 0.00 45.57 5.19
4470 4718 0.833949 GAGGAAGCCTACAAGGAGGG 59.166 60.000 0.00 0.00 37.67 4.30
4471 4719 0.833949 GGAGGAAGCCTACAAGGAGG 59.166 60.000 0.00 0.00 37.67 4.30
4472 4720 1.573108 TGGAGGAAGCCTACAAGGAG 58.427 55.000 0.00 0.00 42.29 3.69
4473 4721 3.807309 TGGAGGAAGCCTACAAGGA 57.193 52.632 0.00 0.00 42.29 3.36
4477 4725 0.617820 GGAGGTGGAGGAAGCCTACA 60.618 60.000 0.00 0.00 43.15 2.74
4478 4726 1.677637 CGGAGGTGGAGGAAGCCTAC 61.678 65.000 0.00 0.00 34.37 3.18
4479 4727 1.381327 CGGAGGTGGAGGAAGCCTA 60.381 63.158 0.00 0.00 31.76 3.93
4480 4728 2.685380 CGGAGGTGGAGGAAGCCT 60.685 66.667 0.00 0.00 36.03 4.58
4481 4729 4.475135 GCGGAGGTGGAGGAAGCC 62.475 72.222 0.00 0.00 0.00 4.35
4482 4730 4.475135 GGCGGAGGTGGAGGAAGC 62.475 72.222 0.00 0.00 0.00 3.86
4483 4731 3.003173 TGGCGGAGGTGGAGGAAG 61.003 66.667 0.00 0.00 0.00 3.46
4484 4732 3.319198 GTGGCGGAGGTGGAGGAA 61.319 66.667 0.00 0.00 0.00 3.36
4490 4738 4.704833 CAGTGGGTGGCGGAGGTG 62.705 72.222 0.00 0.00 0.00 4.00
4499 4747 2.047274 CAGTACCGCCAGTGGGTG 60.047 66.667 12.15 0.00 44.61 4.61
4500 4748 4.016706 GCAGTACCGCCAGTGGGT 62.017 66.667 12.15 3.61 41.62 4.51
4538 4786 3.818787 TTCTACCGCTCGACCCGC 61.819 66.667 0.00 0.00 0.00 6.13
4539 4787 2.101770 GTTCTACCGCTCGACCCG 59.898 66.667 0.00 0.00 0.00 5.28
4540 4788 1.432657 GAGTTCTACCGCTCGACCC 59.567 63.158 0.00 0.00 0.00 4.46
4545 4793 0.248296 CTGCTCGAGTTCTACCGCTC 60.248 60.000 15.13 0.00 0.00 5.03
4546 4794 1.803943 CTGCTCGAGTTCTACCGCT 59.196 57.895 15.13 0.00 0.00 5.52
4547 4795 1.874466 GCTGCTCGAGTTCTACCGC 60.874 63.158 15.13 0.91 0.00 5.68
4548 4796 1.583967 CGCTGCTCGAGTTCTACCG 60.584 63.158 15.13 5.13 41.67 4.02
4549 4797 0.523757 GACGCTGCTCGAGTTCTACC 60.524 60.000 15.13 0.00 41.67 3.18
4550 4798 0.448593 AGACGCTGCTCGAGTTCTAC 59.551 55.000 15.13 0.00 41.67 2.59
4551 4799 0.727970 GAGACGCTGCTCGAGTTCTA 59.272 55.000 15.13 0.00 41.67 2.10
4552 4800 1.504446 GAGACGCTGCTCGAGTTCT 59.496 57.895 15.13 8.16 41.67 3.01
4553 4801 1.515304 GGAGACGCTGCTCGAGTTC 60.515 63.158 15.13 0.00 41.67 3.01
4554 4802 1.974343 AGGAGACGCTGCTCGAGTT 60.974 57.895 15.13 0.00 41.67 3.01
4555 4803 2.360600 AGGAGACGCTGCTCGAGT 60.361 61.111 15.13 0.00 41.67 4.18
4556 4804 2.101965 CAGGAGACGCTGCTCGAG 59.898 66.667 8.45 8.45 41.67 4.04
4557 4805 4.121669 GCAGGAGACGCTGCTCGA 62.122 66.667 5.61 0.00 42.73 4.04
4561 4809 4.074526 TGGAGCAGGAGACGCTGC 62.075 66.667 4.77 4.77 44.11 5.25
4562 4810 2.125753 GTGGAGCAGGAGACGCTG 60.126 66.667 0.00 0.00 39.63 5.18
4563 4811 3.386237 GGTGGAGCAGGAGACGCT 61.386 66.667 0.00 0.00 41.63 5.07
4564 4812 3.655810 CTGGTGGAGCAGGAGACGC 62.656 68.421 0.00 0.00 0.00 5.19
4565 4813 2.575993 CTGGTGGAGCAGGAGACG 59.424 66.667 0.00 0.00 0.00 4.18
4566 4814 1.893919 GACCTGGTGGAGCAGGAGAC 61.894 65.000 27.57 15.53 40.95 3.36
4567 4815 1.610673 GACCTGGTGGAGCAGGAGA 60.611 63.158 27.57 0.00 40.95 3.71
4568 4816 2.664081 GGACCTGGTGGAGCAGGAG 61.664 68.421 27.57 6.27 40.95 3.69
4569 4817 2.607750 GGACCTGGTGGAGCAGGA 60.608 66.667 27.57 0.00 40.95 3.86
4570 4818 2.930019 TGGACCTGGTGGAGCAGG 60.930 66.667 20.87 20.87 43.91 4.85
4571 4819 2.219875 ACTGGACCTGGTGGAGCAG 61.220 63.158 2.82 0.00 37.04 4.24
4572 4820 2.122413 ACTGGACCTGGTGGAGCA 60.122 61.111 2.82 0.00 37.04 4.26
4573 4821 2.348998 CACTGGACCTGGTGGAGC 59.651 66.667 2.82 0.00 37.04 4.70
4574 4822 0.833834 AGACACTGGACCTGGTGGAG 60.834 60.000 2.82 1.70 37.72 3.86
4575 4823 1.121407 CAGACACTGGACCTGGTGGA 61.121 60.000 2.82 0.00 37.72 4.02
4576 4824 1.372683 CAGACACTGGACCTGGTGG 59.627 63.158 2.82 0.00 37.72 4.61
4586 4834 3.716006 CGGTTGCGCCAGACACTG 61.716 66.667 4.18 0.00 36.97 3.66
4644 4892 1.258445 ACAACCGCCACCTCCTCTAG 61.258 60.000 0.00 0.00 0.00 2.43
4645 4893 0.040058 TACAACCGCCACCTCCTCTA 59.960 55.000 0.00 0.00 0.00 2.43
4646 4894 1.229082 TACAACCGCCACCTCCTCT 60.229 57.895 0.00 0.00 0.00 3.69
4647 4895 1.218316 CTACAACCGCCACCTCCTC 59.782 63.158 0.00 0.00 0.00 3.71
4648 4896 2.291043 CCTACAACCGCCACCTCCT 61.291 63.158 0.00 0.00 0.00 3.69
4649 4897 2.267961 CCTACAACCGCCACCTCC 59.732 66.667 0.00 0.00 0.00 4.30
4650 4898 2.436115 GCCTACAACCGCCACCTC 60.436 66.667 0.00 0.00 0.00 3.85
4651 4899 4.388499 CGCCTACAACCGCCACCT 62.388 66.667 0.00 0.00 0.00 4.00
4653 4901 4.692475 ACCGCCTACAACCGCCAC 62.692 66.667 0.00 0.00 0.00 5.01
4654 4902 3.943691 AACCGCCTACAACCGCCA 61.944 61.111 0.00 0.00 0.00 5.69
4655 4903 3.428282 CAACCGCCTACAACCGCC 61.428 66.667 0.00 0.00 0.00 6.13
4656 4904 2.667199 ACAACCGCCTACAACCGC 60.667 61.111 0.00 0.00 0.00 5.68
4657 4905 2.322081 CCACAACCGCCTACAACCG 61.322 63.158 0.00 0.00 0.00 4.44
4658 4906 1.969589 CCCACAACCGCCTACAACC 60.970 63.158 0.00 0.00 0.00 3.77
4659 4907 1.969589 CCCCACAACCGCCTACAAC 60.970 63.158 0.00 0.00 0.00 3.32
4660 4908 2.119484 CTCCCCACAACCGCCTACAA 62.119 60.000 0.00 0.00 0.00 2.41
4661 4909 2.527123 TCCCCACAACCGCCTACA 60.527 61.111 0.00 0.00 0.00 2.74
4662 4910 2.267961 CTCCCCACAACCGCCTAC 59.732 66.667 0.00 0.00 0.00 3.18
4663 4911 3.006728 CCTCCCCACAACCGCCTA 61.007 66.667 0.00 0.00 0.00 3.93
4667 4915 3.717294 CTCCCCTCCCCACAACCG 61.717 72.222 0.00 0.00 0.00 4.44
4668 4916 1.619669 ATCTCCCCTCCCCACAACC 60.620 63.158 0.00 0.00 0.00 3.77
4669 4917 0.914417 TCATCTCCCCTCCCCACAAC 60.914 60.000 0.00 0.00 0.00 3.32
4670 4918 0.914417 GTCATCTCCCCTCCCCACAA 60.914 60.000 0.00 0.00 0.00 3.33
4671 4919 1.306997 GTCATCTCCCCTCCCCACA 60.307 63.158 0.00 0.00 0.00 4.17
4672 4920 2.435693 CGTCATCTCCCCTCCCCAC 61.436 68.421 0.00 0.00 0.00 4.61
4673 4921 1.586586 TACGTCATCTCCCCTCCCCA 61.587 60.000 0.00 0.00 0.00 4.96
4678 4926 3.223435 CACTACATACGTCATCTCCCCT 58.777 50.000 0.00 0.00 0.00 4.79
4680 4928 2.288273 GCCACTACATACGTCATCTCCC 60.288 54.545 0.00 0.00 0.00 4.30
4689 4937 2.268298 GTCCAACAGCCACTACATACG 58.732 52.381 0.00 0.00 0.00 3.06
4693 4941 2.571212 CTTTGTCCAACAGCCACTACA 58.429 47.619 0.00 0.00 0.00 2.74
4694 4942 1.880027 CCTTTGTCCAACAGCCACTAC 59.120 52.381 0.00 0.00 0.00 2.73
4695 4943 1.493022 ACCTTTGTCCAACAGCCACTA 59.507 47.619 0.00 0.00 0.00 2.74
4697 4945 0.385390 CACCTTTGTCCAACAGCCAC 59.615 55.000 0.00 0.00 0.00 5.01
4698 4946 0.257328 TCACCTTTGTCCAACAGCCA 59.743 50.000 0.00 0.00 0.00 4.75
4699 4947 0.954452 CTCACCTTTGTCCAACAGCC 59.046 55.000 0.00 0.00 0.00 4.85
4700 4948 0.954452 CCTCACCTTTGTCCAACAGC 59.046 55.000 0.00 0.00 0.00 4.40
4701 4949 2.222027 GTCCTCACCTTTGTCCAACAG 58.778 52.381 0.00 0.00 0.00 3.16
4727 4975 7.269514 AGGTTCCCTATTTCACTGACCAGTG 62.270 48.000 20.79 20.79 45.47 3.66
4728 4976 3.009143 GGTTCCCTATTTCACTGACCAGT 59.991 47.826 0.00 0.00 43.61 4.00
4731 4979 4.302559 AAGGTTCCCTATTTCACTGACC 57.697 45.455 0.00 0.00 31.13 4.02
4732 4980 5.429130 CCTAAGGTTCCCTATTTCACTGAC 58.571 45.833 0.00 0.00 31.13 3.51
4733 4981 4.473559 CCCTAAGGTTCCCTATTTCACTGA 59.526 45.833 0.00 0.00 31.13 3.41
4734 4982 4.781934 CCCTAAGGTTCCCTATTTCACTG 58.218 47.826 0.00 0.00 31.13 3.66
4735 4983 3.202373 GCCCTAAGGTTCCCTATTTCACT 59.798 47.826 0.00 0.00 31.13 3.41
4736 4984 3.053917 TGCCCTAAGGTTCCCTATTTCAC 60.054 47.826 0.00 0.00 31.13 3.18
4737 4985 3.194620 TGCCCTAAGGTTCCCTATTTCA 58.805 45.455 0.00 0.00 31.13 2.69
4738 4986 3.945640 TGCCCTAAGGTTCCCTATTTC 57.054 47.619 0.00 0.00 31.13 2.17
4739 4987 4.055094 AGATGCCCTAAGGTTCCCTATTT 58.945 43.478 0.00 0.00 31.13 1.40
4740 4988 3.653352 GAGATGCCCTAAGGTTCCCTATT 59.347 47.826 0.00 0.00 31.13 1.73
4741 4989 3.252351 GAGATGCCCTAAGGTTCCCTAT 58.748 50.000 0.00 0.00 31.13 2.57
4742 4990 2.690840 GAGATGCCCTAAGGTTCCCTA 58.309 52.381 0.00 0.00 31.13 3.53
4743 4991 1.512735 GAGATGCCCTAAGGTTCCCT 58.487 55.000 0.00 0.00 33.87 4.20
4744 4992 0.474614 GGAGATGCCCTAAGGTTCCC 59.525 60.000 0.00 0.00 34.57 3.97
4745 4993 1.213296 TGGAGATGCCCTAAGGTTCC 58.787 55.000 0.00 0.00 34.97 3.62
4746 4994 2.644676 GTTGGAGATGCCCTAAGGTTC 58.355 52.381 0.00 0.00 34.97 3.62
4747 4995 1.065418 CGTTGGAGATGCCCTAAGGTT 60.065 52.381 0.00 0.00 34.97 3.50
4748 4996 0.541863 CGTTGGAGATGCCCTAAGGT 59.458 55.000 0.00 0.00 34.97 3.50
4749 4997 0.179045 CCGTTGGAGATGCCCTAAGG 60.179 60.000 0.00 0.00 34.97 2.69
4750 4998 0.815615 GCCGTTGGAGATGCCCTAAG 60.816 60.000 0.00 0.00 34.97 2.18
4751 4999 1.223487 GCCGTTGGAGATGCCCTAA 59.777 57.895 0.00 0.00 34.97 2.69
4752 5000 1.558167 TTGCCGTTGGAGATGCCCTA 61.558 55.000 0.00 0.00 34.97 3.53
4753 5001 2.905996 TTGCCGTTGGAGATGCCCT 61.906 57.895 0.00 0.00 34.97 5.19
4754 5002 2.361104 TTGCCGTTGGAGATGCCC 60.361 61.111 0.00 0.00 34.97 5.36
4755 5003 1.648467 GAGTTGCCGTTGGAGATGCC 61.648 60.000 0.00 0.00 37.10 4.40
4756 5004 1.796796 GAGTTGCCGTTGGAGATGC 59.203 57.895 0.00 0.00 0.00 3.91
4757 5005 1.970917 GCGAGTTGCCGTTGGAGATG 61.971 60.000 0.00 0.00 37.76 2.90
4758 5006 1.741770 GCGAGTTGCCGTTGGAGAT 60.742 57.895 0.00 0.00 37.76 2.75
4759 5007 2.357034 GCGAGTTGCCGTTGGAGA 60.357 61.111 0.00 0.00 37.76 3.71
4760 5008 1.781025 TTTGCGAGTTGCCGTTGGAG 61.781 55.000 0.00 0.00 45.60 3.86
4763 5011 1.451651 GAAATTTGCGAGTTGCCGTTG 59.548 47.619 0.00 0.00 45.60 4.10
4823 5071 1.000060 GTATGCGGCTACGGTTGGATA 60.000 52.381 0.00 0.00 41.36 2.59
4922 5194 6.475207 CACCGCTTAGTTGATGTAAATGTAC 58.525 40.000 0.00 0.00 0.00 2.90
5139 5516 2.747460 GCTCAACATCGGCAGCCA 60.747 61.111 13.30 0.00 0.00 4.75
5175 5552 3.465403 CCACTGCTCCTCTCCCGG 61.465 72.222 0.00 0.00 0.00 5.73
5303 5683 1.448922 GACGAGGAGGAGGACATCGG 61.449 65.000 0.00 0.00 43.95 4.18
5371 5774 3.948719 GTGGCGGTGGTGGAGGAA 61.949 66.667 0.00 0.00 0.00 3.36
5406 5841 2.362503 AGATCCGCCTCGTCCACA 60.363 61.111 0.00 0.00 0.00 4.17
5557 6021 1.357137 TTACACATGGTGCTGGAGGA 58.643 50.000 0.00 0.00 36.98 3.71
5563 6027 0.039472 TGCCCATTACACATGGTGCT 59.961 50.000 0.00 0.00 36.98 4.40
5565 6029 0.451383 CGTGCCCATTACACATGGTG 59.549 55.000 0.00 0.00 37.93 4.17
5567 6031 1.383456 CCCGTGCCCATTACACATGG 61.383 60.000 0.00 0.00 39.70 3.66
5570 6034 1.003112 GACCCGTGCCCATTACACA 60.003 57.895 0.00 0.00 37.93 3.72
5571 6035 0.743345 GAGACCCGTGCCCATTACAC 60.743 60.000 0.00 0.00 34.62 2.90
5587 6091 3.770040 CCATGACCACCGGCGAGA 61.770 66.667 9.30 0.00 0.00 4.04
5750 6304 3.256960 TCCCCCGCCAAAGCTCTT 61.257 61.111 0.00 0.00 36.60 2.85
5774 6328 1.252215 TTCGCACGACTCCCACCATA 61.252 55.000 0.00 0.00 0.00 2.74
5786 6340 2.278857 CCGATCCCTCTTCGCACG 60.279 66.667 0.00 0.00 35.31 5.34
5792 6346 2.664835 ATCCGCCTCCGATCCCTCTT 62.665 60.000 0.00 0.00 36.29 2.85
5862 6427 1.605058 GCCGCTCCAGAGTGTCCTTA 61.605 60.000 7.40 0.00 37.24 2.69
5906 6905 4.653888 AAAACCCTCCCCCGCGTG 62.654 66.667 4.92 0.00 0.00 5.34
5910 6909 1.343142 CAAAAGAAAAACCCTCCCCCG 59.657 52.381 0.00 0.00 0.00 5.73
5916 6915 1.488812 GCCCACCAAAAGAAAAACCCT 59.511 47.619 0.00 0.00 0.00 4.34
5917 6916 1.476110 GGCCCACCAAAAGAAAAACCC 60.476 52.381 0.00 0.00 35.26 4.11
5919 6918 2.700722 TGGCCCACCAAAAGAAAAAC 57.299 45.000 0.00 0.00 45.37 2.43
5960 6959 2.266055 GGGAGTCTGAACCGCTGG 59.734 66.667 0.00 0.00 0.00 4.85
5961 6960 2.125912 CGGGAGTCTGAACCGCTG 60.126 66.667 4.18 0.00 41.23 5.18
5966 6965 0.884704 TGCTTTGCGGGAGTCTGAAC 60.885 55.000 0.00 0.00 0.00 3.18
5967 6966 0.179032 TTGCTTTGCGGGAGTCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
6000 6999 2.852180 AAACCGGGGACAAAAGCGC 61.852 57.895 6.32 0.00 0.00 5.92
6001 7000 1.007849 CAAACCGGGGACAAAAGCG 60.008 57.895 6.32 0.00 0.00 4.68
6002 7001 1.300620 GCAAACCGGGGACAAAAGC 60.301 57.895 6.32 0.00 0.00 3.51
6003 7002 0.031994 CTGCAAACCGGGGACAAAAG 59.968 55.000 6.32 0.00 0.00 2.27
6011 7010 0.537371 ACTTTCTCCTGCAAACCGGG 60.537 55.000 6.32 0.00 41.74 5.73
6012 7011 1.804748 GTACTTTCTCCTGCAAACCGG 59.195 52.381 0.00 0.00 0.00 5.28
6091 7090 1.749258 GCCGACCATCAAACCTCCC 60.749 63.158 0.00 0.00 0.00 4.30
6092 7091 2.106683 CGCCGACCATCAAACCTCC 61.107 63.158 0.00 0.00 0.00 4.30
6093 7092 0.953960 AACGCCGACCATCAAACCTC 60.954 55.000 0.00 0.00 0.00 3.85
6094 7093 1.072505 AACGCCGACCATCAAACCT 59.927 52.632 0.00 0.00 0.00 3.50
6095 7094 1.209127 CAACGCCGACCATCAAACC 59.791 57.895 0.00 0.00 0.00 3.27
6096 7095 1.209127 CCAACGCCGACCATCAAAC 59.791 57.895 0.00 0.00 0.00 2.93
6097 7096 0.953471 CTCCAACGCCGACCATCAAA 60.953 55.000 0.00 0.00 0.00 2.69
6098 7097 1.375396 CTCCAACGCCGACCATCAA 60.375 57.895 0.00 0.00 0.00 2.57
6099 7098 1.613317 ATCTCCAACGCCGACCATCA 61.613 55.000 0.00 0.00 0.00 3.07
6100 7099 1.144057 ATCTCCAACGCCGACCATC 59.856 57.895 0.00 0.00 0.00 3.51
6101 7100 1.153369 CATCTCCAACGCCGACCAT 60.153 57.895 0.00 0.00 0.00 3.55
6102 7101 2.264480 CATCTCCAACGCCGACCA 59.736 61.111 0.00 0.00 0.00 4.02
6103 7102 3.195698 GCATCTCCAACGCCGACC 61.196 66.667 0.00 0.00 0.00 4.79
6104 7103 3.195698 GGCATCTCCAACGCCGAC 61.196 66.667 0.00 0.00 35.79 4.79
6107 7106 1.095807 GTAAGGGCATCTCCAACGCC 61.096 60.000 0.00 0.00 45.47 5.68
6108 7107 1.429148 CGTAAGGGCATCTCCAACGC 61.429 60.000 0.00 0.00 33.82 4.84
6109 7108 0.108329 ACGTAAGGGCATCTCCAACG 60.108 55.000 0.00 0.00 46.39 4.10
6110 7109 1.207329 AGACGTAAGGGCATCTCCAAC 59.793 52.381 0.00 0.00 46.39 3.77
6111 7110 1.568504 AGACGTAAGGGCATCTCCAA 58.431 50.000 0.00 0.00 46.39 3.53
6112 7111 1.568504 AAGACGTAAGGGCATCTCCA 58.431 50.000 0.00 0.00 46.39 3.86
6113 7112 2.693267 AAAGACGTAAGGGCATCTCC 57.307 50.000 0.00 0.00 46.39 3.71
6312 7315 5.870978 CCAGTTTTTGCAGGATAAATTGGAG 59.129 40.000 11.96 0.00 39.58 3.86
6552 7555 5.287992 GTCAGGTACGCACTTCAATAAGTAC 59.712 44.000 0.00 0.00 44.28 2.73
6747 7750 9.442047 GCCACATAATGTTAAGCTATAGATTCT 57.558 33.333 6.50 0.00 0.00 2.40
6827 7839 1.892209 AGGGTTAACTTTGGACTGCG 58.108 50.000 5.42 0.00 0.00 5.18
6837 7849 9.309224 ACTTCATATAAAAGCAAAGGGTTAACT 57.691 29.630 5.42 0.00 33.60 2.24
6838 7850 9.923143 AACTTCATATAAAAGCAAAGGGTTAAC 57.077 29.630 0.00 0.00 33.60 2.01
6841 7853 9.084533 TGTAACTTCATATAAAAGCAAAGGGTT 57.915 29.630 0.00 0.00 35.98 4.11
6842 7854 8.644374 TGTAACTTCATATAAAAGCAAAGGGT 57.356 30.769 0.00 0.00 0.00 4.34
6905 7917 1.346722 CAGTAAGTGTCGTTCCCCCTT 59.653 52.381 0.00 0.00 0.00 3.95
6906 7918 0.974383 CAGTAAGTGTCGTTCCCCCT 59.026 55.000 0.00 0.00 0.00 4.79
7083 8110 0.391927 CCGGAGCATAACCAACGGAA 60.392 55.000 0.00 0.00 43.69 4.30
7125 8152 7.712639 ACAAGGTATAATACTGACATCAAGCAG 59.287 37.037 0.00 0.00 38.10 4.24
7159 8186 1.662686 AAGGGAAACAGCTAGGCTCT 58.337 50.000 0.00 0.00 36.40 4.09
7168 8195 2.886523 TCTGCATCACAAAGGGAAACAG 59.113 45.455 0.00 0.00 0.00 3.16
7337 8366 3.062234 CGAGCGAAAGAAACTTATGGGAC 59.938 47.826 0.00 0.00 0.00 4.46
7378 8408 8.603898 TCTATACTAACTCCAATTCCAGACAA 57.396 34.615 0.00 0.00 0.00 3.18
7730 8769 4.829968 AGTCATATGCCATCTATCACAGC 58.170 43.478 0.00 0.00 0.00 4.40
7855 8894 1.281867 ACAGCCTTGCCTGCTAATACA 59.718 47.619 0.00 0.00 36.81 2.29
7856 8895 2.044123 ACAGCCTTGCCTGCTAATAC 57.956 50.000 0.00 0.00 36.81 1.89
7875 8914 5.783360 TGTAACTCAATCTCCTCCCTACAAA 59.217 40.000 0.00 0.00 0.00 2.83
7904 8943 6.317857 GTTATTTGATGTGCTGTCCTTCTTC 58.682 40.000 0.00 0.00 0.00 2.87
7933 8972 3.133721 GGTGATGTACTGCTCTTCCTCAT 59.866 47.826 0.00 0.00 0.00 2.90
7934 8973 2.497675 GGTGATGTACTGCTCTTCCTCA 59.502 50.000 0.00 0.00 0.00 3.86
7950 8989 2.957006 GTGATGTACGGACTAGGGTGAT 59.043 50.000 0.00 0.00 0.00 3.06
7964 9003 4.835056 CCATCAGGATAGTCTGGTGATGTA 59.165 45.833 6.68 0.00 45.96 2.29
7976 9015 2.492012 GTTGCTCTGCCATCAGGATAG 58.508 52.381 0.00 0.00 40.69 2.08
8000 9039 4.557205 CGAGTAGTTTCCAGTTTAGCAGT 58.443 43.478 0.00 0.00 0.00 4.40
8003 9042 3.323243 TGCGAGTAGTTTCCAGTTTAGC 58.677 45.455 0.00 0.00 0.00 3.09
8016 9055 4.113354 GGTAAGAACTCCATTGCGAGTAG 58.887 47.826 7.83 0.00 42.35 2.57
8082 9121 0.895530 ATCTCCGTCATTGTCCGTGT 59.104 50.000 0.00 0.00 0.00 4.49
8177 9216 0.393944 AGTGTGGCAGCATCATGGAG 60.394 55.000 0.00 0.00 0.00 3.86
8181 9220 2.110967 GCGAGTGTGGCAGCATCAT 61.111 57.895 0.00 0.00 0.00 2.45
8192 9231 1.371558 GTCAAGGGAAGGCGAGTGT 59.628 57.895 0.00 0.00 0.00 3.55
8193 9232 1.376037 GGTCAAGGGAAGGCGAGTG 60.376 63.158 0.00 0.00 0.00 3.51
8292 9331 0.974010 TCGGTAGGCGAGTTCCCAAT 60.974 55.000 0.00 0.00 0.00 3.16
8364 9403 9.226606 CCTGTACATTCCTTCACAAAAACTATA 57.773 33.333 0.00 0.00 0.00 1.31
8391 9430 7.221452 GTGGTAAAGATCATCATCATTGTTTGC 59.779 37.037 0.00 0.00 0.00 3.68
8397 9436 8.991783 AATCTGTGGTAAAGATCATCATCATT 57.008 30.769 0.00 0.00 33.17 2.57
8432 9471 8.806429 TTTCAGATGACATGTACAACCATAAT 57.194 30.769 0.00 0.00 0.00 1.28
8433 9472 8.628630 TTTTCAGATGACATGTACAACCATAA 57.371 30.769 0.00 0.00 0.00 1.90
8617 9656 5.069914 TGCAGTGGTTGAAACTTCTCTAGTA 59.930 40.000 0.00 0.00 35.54 1.82
8635 9674 4.553323 CTTTCCCTCAAGAAATTGCAGTG 58.447 43.478 0.00 0.00 35.30 3.66
8657 9696 2.029649 ACATGTTCAAACAGCATGAGGC 60.030 45.455 10.22 0.00 43.04 4.70
8713 9752 5.070313 AGGTTCTGGTTGTTGTTATTGCATT 59.930 36.000 0.00 0.00 0.00 3.56
8723 9762 4.097741 TGATGTTGAAGGTTCTGGTTGTTG 59.902 41.667 0.00 0.00 0.00 3.33
8762 9801 5.710984 ACCACACATCTACTAGAAAACTCG 58.289 41.667 0.00 0.00 0.00 4.18
8772 9811 3.450904 ACCCATGTACCACACATCTACT 58.549 45.455 0.00 0.00 44.99 2.57
8773 9812 3.196901 TGACCCATGTACCACACATCTAC 59.803 47.826 0.00 0.00 44.99 2.59
8774 9813 3.445987 TGACCCATGTACCACACATCTA 58.554 45.455 0.00 0.00 44.99 1.98
8775 9814 2.265367 TGACCCATGTACCACACATCT 58.735 47.619 0.00 0.00 44.99 2.90
8776 9815 2.779755 TGACCCATGTACCACACATC 57.220 50.000 0.00 0.00 44.99 3.06
8778 9817 3.218453 CTTTTGACCCATGTACCACACA 58.782 45.455 0.00 0.00 42.69 3.72
8779 9818 3.219281 ACTTTTGACCCATGTACCACAC 58.781 45.455 0.00 0.00 0.00 3.82
8781 9820 4.082949 GCTAACTTTTGACCCATGTACCAC 60.083 45.833 0.00 0.00 0.00 4.16
8782 9821 4.076394 GCTAACTTTTGACCCATGTACCA 58.924 43.478 0.00 0.00 0.00 3.25
8783 9822 4.332828 AGCTAACTTTTGACCCATGTACC 58.667 43.478 0.00 0.00 0.00 3.34
8869 10054 7.578852 TGCTTGCATGATATAAGAAAGAATCG 58.421 34.615 3.33 0.00 0.00 3.34
8950 10138 1.469767 GGCGGCTTTCATCAAATCCAC 60.470 52.381 0.00 0.00 29.40 4.02
8969 10157 3.797507 CTGGGATTCATGGCCGGGG 62.798 68.421 2.18 0.00 0.00 5.73
9011 10199 2.357637 CGACTGCCCAAAGTCTGAAAAA 59.642 45.455 3.13 0.00 43.71 1.94
9012 10200 1.946768 CGACTGCCCAAAGTCTGAAAA 59.053 47.619 3.13 0.00 43.71 2.29
9032 10220 0.869454 CTTCGTCCTCATGAGCGAGC 60.869 60.000 17.76 9.49 34.78 5.03
9035 10223 0.453793 AGTCTTCGTCCTCATGAGCG 59.546 55.000 17.76 15.86 0.00 5.03
9047 10235 2.435586 CAGCAGGCCCAGTCTTCG 60.436 66.667 0.00 0.00 0.00 3.79
9077 10265 1.219393 GCTGCTGAGGGACTACCAC 59.781 63.158 0.00 0.00 41.55 4.16
9201 10390 9.573133 TCAAAGAAGAAGAAAACTGAATTTGAC 57.427 29.630 0.00 0.00 30.43 3.18
9239 10428 7.009999 CGTTTTTCCAATTGTCATGAAACTGAA 59.990 33.333 4.43 0.00 0.00 3.02
9249 10438 1.405821 ACGCCGTTTTTCCAATTGTCA 59.594 42.857 4.43 0.00 0.00 3.58
9259 10448 2.668250 GCCTCAATTTACGCCGTTTTT 58.332 42.857 0.00 0.00 0.00 1.94
9271 10460 0.740737 GCCTAATGCACGCCTCAATT 59.259 50.000 0.00 0.00 40.77 2.32
9272 10461 1.439353 CGCCTAATGCACGCCTCAAT 61.439 55.000 0.00 0.00 41.33 2.57
9283 10472 1.869767 GAGATGCTTGACCGCCTAATG 59.130 52.381 0.00 0.00 0.00 1.90
9288 10477 1.227380 ATCGAGATGCTTGACCGCC 60.227 57.895 0.00 0.00 0.00 6.13
9292 10481 1.493950 CGCCCATCGAGATGCTTGAC 61.494 60.000 7.53 0.00 41.67 3.18
9294 10483 2.890109 GCGCCCATCGAGATGCTTG 61.890 63.158 7.53 1.00 41.67 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.