Multiple sequence alignment - TraesCS7A01G250300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G250300 chr7A 100.000 6352 0 0 1 6352 232629619 232623268 0.000000e+00 11731.0
1 TraesCS7A01G250300 chr7A 94.444 306 16 1 175 479 514778110 514778415 2.680000e-128 470.0
2 TraesCS7A01G250300 chr7A 94.175 309 15 3 173 478 4785072 4784764 9.640000e-128 468.0
3 TraesCS7A01G250300 chr7A 94.426 305 16 1 175 478 732945694 732945998 9.640000e-128 468.0
4 TraesCS7A01G250300 chr7A 81.307 551 63 24 5826 6352 127072427 127072961 1.650000e-110 411.0
5 TraesCS7A01G250300 chr7A 87.330 221 25 3 6135 6352 701371152 701371372 3.800000e-62 250.0
6 TraesCS7A01G250300 chr7A 82.946 258 35 6 5829 6083 548587655 548587906 2.300000e-54 224.0
7 TraesCS7A01G250300 chr7A 100.000 49 0 0 1 49 216221925 216221877 2.440000e-14 91.6
8 TraesCS7A01G250300 chr7A 100.000 49 0 0 1 49 683440085 683440037 2.440000e-14 91.6
9 TraesCS7A01G250300 chr7D 94.355 3791 121 35 2525 6245 220311095 220307328 0.000000e+00 5729.0
10 TraesCS7A01G250300 chr7D 91.499 2082 85 41 477 2528 220313194 220311175 0.000000e+00 2780.0
11 TraesCS7A01G250300 chr7D 86.878 221 26 3 6135 6352 19199901 19199681 1.770000e-60 244.0
12 TraesCS7A01G250300 chr7D 82.824 262 35 9 5826 6083 30532624 30532879 6.410000e-55 226.0
13 TraesCS7A01G250300 chr7D 100.000 48 0 0 1 48 256214555 256214602 8.770000e-14 89.8
14 TraesCS7A01G250300 chr7B 93.855 2018 75 13 3836 5819 179200345 179202347 0.000000e+00 2994.0
15 TraesCS7A01G250300 chr7B 92.703 2083 87 30 557 2592 179196847 179198911 0.000000e+00 2944.0
16 TraesCS7A01G250300 chr7B 94.644 1251 45 8 2594 3838 179199035 179200269 0.000000e+00 1919.0
17 TraesCS7A01G250300 chr7B 87.273 220 24 4 6135 6352 651201966 651202183 1.370000e-61 248.0
18 TraesCS7A01G250300 chr3B 95.082 305 13 2 176 478 606376050 606376354 4.450000e-131 479.0
19 TraesCS7A01G250300 chr2A 92.285 337 24 2 154 488 155766795 155766459 1.600000e-130 477.0
20 TraesCS7A01G250300 chr2A 85.973 221 28 3 6135 6352 139890193 139889973 3.830000e-57 233.0
21 TraesCS7A01G250300 chr2A 100.000 48 0 0 1 48 131774467 131774514 8.770000e-14 89.8
22 TraesCS7A01G250300 chr1B 93.910 312 17 2 176 486 589545393 589545703 2.680000e-128 470.0
23 TraesCS7A01G250300 chr1A 94.719 303 14 2 178 478 520860758 520861060 2.680000e-128 470.0
24 TraesCS7A01G250300 chr1A 97.917 48 1 0 1 48 490860833 490860880 4.080000e-12 84.2
25 TraesCS7A01G250300 chr2B 94.156 308 16 2 175 480 798371636 798371943 9.640000e-128 468.0
26 TraesCS7A01G250300 chr2B 82.800 250 35 7 5844 6089 755645621 755645376 3.860000e-52 217.0
27 TraesCS7A01G250300 chr6A 94.118 306 16 2 175 478 22627017 22626712 1.250000e-126 464.0
28 TraesCS7A01G250300 chr6A 87.783 221 24 3 6135 6352 127090257 127090037 8.170000e-64 255.0
29 TraesCS7A01G250300 chr1D 85.768 267 28 8 5826 6089 25839378 25839119 2.260000e-69 274.0
30 TraesCS7A01G250300 chr1D 84.962 266 32 6 5826 6089 25871985 25871726 4.880000e-66 263.0
31 TraesCS7A01G250300 chr1D 97.531 81 2 0 42 122 461900968 461900888 8.590000e-29 139.0
32 TraesCS7A01G250300 chr6B 88.688 221 20 5 6135 6352 191205673 191205455 1.360000e-66 265.0
33 TraesCS7A01G250300 chr3D 85.200 250 28 6 5844 6089 534158190 534157946 1.370000e-61 248.0
34 TraesCS7A01G250300 chr3D 95.349 86 3 1 37 122 341473569 341473653 1.110000e-27 135.0
35 TraesCS7A01G250300 chr3A 86.486 222 25 5 6135 6352 630040700 630040920 8.230000e-59 239.0
36 TraesCS7A01G250300 chr3A 82.171 258 38 7 5826 6080 658724876 658725128 1.390000e-51 215.0
37 TraesCS7A01G250300 chr4D 85.973 221 27 4 6135 6352 40220684 40220465 3.830000e-57 233.0
38 TraesCS7A01G250300 chr4A 82.331 266 37 10 5826 6089 609186332 609186075 8.290000e-54 222.0
39 TraesCS7A01G250300 chr4A 95.833 48 1 1 1 48 618301341 618301387 6.830000e-10 76.8
40 TraesCS7A01G250300 chrUn 97.531 81 2 0 42 122 10585018 10584938 8.590000e-29 139.0
41 TraesCS7A01G250300 chr6D 97.531 81 2 0 42 122 351143341 351143261 8.590000e-29 139.0
42 TraesCS7A01G250300 chr4B 97.531 81 2 0 42 122 81362496 81362576 8.590000e-29 139.0
43 TraesCS7A01G250300 chr2D 97.531 81 2 0 42 122 582187471 582187391 8.590000e-29 139.0
44 TraesCS7A01G250300 chr2D 95.349 86 3 1 37 122 58736783 58736699 1.110000e-27 135.0
45 TraesCS7A01G250300 chr2D 100.000 48 0 0 1 48 322900498 322900545 8.770000e-14 89.8
46 TraesCS7A01G250300 chr2D 97.959 49 1 0 1 49 510591849 510591801 1.130000e-12 86.1
47 TraesCS7A01G250300 chr5D 93.407 91 4 2 34 123 91410488 91410577 4.000000e-27 134.0
48 TraesCS7A01G250300 chr5D 94.318 88 4 1 35 122 349857298 349857212 4.000000e-27 134.0
49 TraesCS7A01G250300 chr5B 95.918 49 2 0 1 49 655275649 655275697 5.280000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G250300 chr7A 232623268 232629619 6351 True 11731.0 11731 100.000 1 6352 1 chr7A.!!$R3 6351
1 TraesCS7A01G250300 chr7A 127072427 127072961 534 False 411.0 411 81.307 5826 6352 1 chr7A.!!$F1 526
2 TraesCS7A01G250300 chr7D 220307328 220313194 5866 True 4254.5 5729 92.927 477 6245 2 chr7D.!!$R2 5768
3 TraesCS7A01G250300 chr7B 179196847 179202347 5500 False 2619.0 2994 93.734 557 5819 3 chr7B.!!$F2 5262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.033503 GGTATTCCCAACCCACCAGG 60.034 60.000 0.00 0.0 43.78 4.45 F
343 344 0.034896 AGGTGCCTACGGTGACTTTG 59.965 55.000 0.00 0.0 0.00 2.77 F
426 427 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.0 0.00 4.02 F
1116 1137 0.109873 CGCTCCTTCTTGCTTTGCTG 60.110 55.000 0.00 0.0 0.00 4.41 F
2411 2476 0.183492 AACTGGTCTGAGCCTGCAAA 59.817 50.000 4.17 0.0 0.00 3.68 F
4056 4413 1.945394 CTGTATGCTCTGTTGGATGGC 59.055 52.381 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1256 1299 0.034477 AAAGGTGGGCGGATTGGTAG 60.034 55.000 0.00 0.00 0.00 3.18 R
1450 1494 1.039068 CACCATTGGCACCAACAGAA 58.961 50.000 3.77 0.00 38.88 3.02 R
1734 1784 2.034558 CAGTGGTCGGCAATGTTCTTTT 59.965 45.455 0.00 0.00 0.00 2.27 R
2592 2743 2.544694 CGAACTACAGCAGCTATGGAGG 60.545 54.545 13.49 1.99 32.48 4.30 R
4104 4461 0.659427 CATATGCTGCAGGACAACGG 59.341 55.000 17.12 0.00 0.00 4.44 R
5552 5934 0.388134 CAATTGTGACCTGCTGCTGC 60.388 55.000 8.89 8.89 40.20 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
39 40 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
40 41 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
41 42 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
42 43 4.998672 TGAAATTACTACGTTCCCCAACAG 59.001 41.667 0.00 0.00 32.14 3.16
43 44 4.895668 AATTACTACGTTCCCCAACAGA 57.104 40.909 0.00 0.00 32.14 3.41
44 45 4.895668 ATTACTACGTTCCCCAACAGAA 57.104 40.909 0.00 0.00 32.14 3.02
45 46 4.686191 TTACTACGTTCCCCAACAGAAA 57.314 40.909 0.00 0.00 32.14 2.52
46 47 3.564053 ACTACGTTCCCCAACAGAAAA 57.436 42.857 0.00 0.00 32.14 2.29
47 48 3.473625 ACTACGTTCCCCAACAGAAAAG 58.526 45.455 0.00 0.00 32.14 2.27
48 49 2.721425 ACGTTCCCCAACAGAAAAGA 57.279 45.000 0.00 0.00 32.14 2.52
49 50 3.007473 ACGTTCCCCAACAGAAAAGAA 57.993 42.857 0.00 0.00 32.14 2.52
50 51 3.562182 ACGTTCCCCAACAGAAAAGAAT 58.438 40.909 0.00 0.00 32.14 2.40
51 52 3.317993 ACGTTCCCCAACAGAAAAGAATG 59.682 43.478 0.00 0.00 32.14 2.67
52 53 3.568007 CGTTCCCCAACAGAAAAGAATGA 59.432 43.478 0.00 0.00 32.14 2.57
53 54 4.556699 CGTTCCCCAACAGAAAAGAATGAC 60.557 45.833 0.00 0.00 32.14 3.06
54 55 3.146066 TCCCCAACAGAAAAGAATGACG 58.854 45.455 0.00 0.00 0.00 4.35
55 56 3.146066 CCCCAACAGAAAAGAATGACGA 58.854 45.455 0.00 0.00 0.00 4.20
56 57 3.568007 CCCCAACAGAAAAGAATGACGAA 59.432 43.478 0.00 0.00 0.00 3.85
57 58 4.218417 CCCCAACAGAAAAGAATGACGAAT 59.782 41.667 0.00 0.00 0.00 3.34
58 59 5.393962 CCCAACAGAAAAGAATGACGAATC 58.606 41.667 0.00 0.00 0.00 2.52
59 60 5.048782 CCCAACAGAAAAGAATGACGAATCA 60.049 40.000 0.00 0.00 39.83 2.57
60 61 5.853282 CCAACAGAAAAGAATGACGAATCAC 59.147 40.000 0.00 0.00 37.79 3.06
61 62 5.613358 ACAGAAAAGAATGACGAATCACC 57.387 39.130 0.00 0.00 37.79 4.02
62 63 5.308825 ACAGAAAAGAATGACGAATCACCT 58.691 37.500 0.00 0.00 37.79 4.00
63 64 5.765182 ACAGAAAAGAATGACGAATCACCTT 59.235 36.000 0.00 0.00 37.79 3.50
64 65 6.073003 ACAGAAAAGAATGACGAATCACCTTC 60.073 38.462 0.00 0.00 37.79 3.46
65 66 6.148480 CAGAAAAGAATGACGAATCACCTTCT 59.852 38.462 0.00 0.00 36.26 2.85
66 67 6.370166 AGAAAAGAATGACGAATCACCTTCTC 59.630 38.462 0.00 0.00 34.48 2.87
67 68 4.808414 AGAATGACGAATCACCTTCTCA 57.192 40.909 0.00 0.00 37.79 3.27
68 69 4.499183 AGAATGACGAATCACCTTCTCAC 58.501 43.478 0.00 0.00 37.79 3.51
69 70 2.743636 TGACGAATCACCTTCTCACC 57.256 50.000 0.00 0.00 0.00 4.02
70 71 1.275291 TGACGAATCACCTTCTCACCC 59.725 52.381 0.00 0.00 0.00 4.61
71 72 0.246635 ACGAATCACCTTCTCACCCG 59.753 55.000 0.00 0.00 0.00 5.28
72 73 0.530744 CGAATCACCTTCTCACCCGA 59.469 55.000 0.00 0.00 0.00 5.14
73 74 1.469940 CGAATCACCTTCTCACCCGAG 60.470 57.143 0.00 0.00 40.98 4.63
74 75 0.250513 AATCACCTTCTCACCCGAGC 59.749 55.000 0.00 0.00 39.30 5.03
75 76 0.616111 ATCACCTTCTCACCCGAGCT 60.616 55.000 0.00 0.00 39.30 4.09
76 77 0.832135 TCACCTTCTCACCCGAGCTT 60.832 55.000 0.00 0.00 39.30 3.74
77 78 0.671781 CACCTTCTCACCCGAGCTTG 60.672 60.000 0.00 0.00 39.30 4.01
78 79 0.832135 ACCTTCTCACCCGAGCTTGA 60.832 55.000 1.22 0.00 39.30 3.02
79 80 0.390472 CCTTCTCACCCGAGCTTGAC 60.390 60.000 1.22 0.00 39.30 3.18
80 81 0.734253 CTTCTCACCCGAGCTTGACG 60.734 60.000 1.22 0.00 39.30 4.35
81 82 2.765250 TTCTCACCCGAGCTTGACGC 62.765 60.000 1.22 0.00 39.30 5.19
82 83 4.717629 TCACCCGAGCTTGACGCG 62.718 66.667 3.53 3.53 45.59 6.01
98 99 2.645567 CGGCTCCGTCGCTGATAT 59.354 61.111 0.00 0.00 38.57 1.63
99 100 1.730902 CGGCTCCGTCGCTGATATG 60.731 63.158 0.00 0.00 38.57 1.78
100 101 2.024319 GGCTCCGTCGCTGATATGC 61.024 63.158 0.00 0.00 0.00 3.14
101 102 1.300156 GCTCCGTCGCTGATATGCA 60.300 57.895 0.00 0.00 0.00 3.96
110 111 3.839654 CTGATATGCAGCTTTGCGG 57.160 52.632 0.00 0.00 37.90 5.69
111 112 1.302366 CTGATATGCAGCTTTGCGGA 58.698 50.000 0.00 0.00 37.90 5.54
112 113 1.003116 CTGATATGCAGCTTTGCGGAC 60.003 52.381 0.00 0.00 37.90 4.79
113 114 0.308993 GATATGCAGCTTTGCGGACC 59.691 55.000 0.00 0.00 37.69 4.46
114 115 0.107017 ATATGCAGCTTTGCGGACCT 60.107 50.000 0.00 0.00 37.69 3.85
115 116 0.744414 TATGCAGCTTTGCGGACCTC 60.744 55.000 0.00 0.00 37.69 3.85
116 117 3.435186 GCAGCTTTGCGGACCTCC 61.435 66.667 0.00 0.00 0.00 4.30
117 118 2.032528 CAGCTTTGCGGACCTCCA 59.967 61.111 0.00 0.00 35.14 3.86
118 119 1.600636 CAGCTTTGCGGACCTCCAA 60.601 57.895 0.00 0.00 35.14 3.53
119 120 1.302832 AGCTTTGCGGACCTCCAAG 60.303 57.895 0.00 0.00 35.14 3.61
120 121 2.335712 GCTTTGCGGACCTCCAAGG 61.336 63.158 0.00 0.00 42.49 3.61
132 133 3.336138 CCTCCAAGGTAAGGTCAAGTC 57.664 52.381 0.00 0.00 0.00 3.01
133 134 2.637872 CCTCCAAGGTAAGGTCAAGTCA 59.362 50.000 0.00 0.00 0.00 3.41
134 135 3.557264 CCTCCAAGGTAAGGTCAAGTCAC 60.557 52.174 0.00 0.00 0.00 3.67
135 136 3.314693 TCCAAGGTAAGGTCAAGTCACT 58.685 45.455 0.00 0.00 0.00 3.41
136 137 3.714798 TCCAAGGTAAGGTCAAGTCACTT 59.285 43.478 0.00 0.00 0.00 3.16
137 138 4.165372 TCCAAGGTAAGGTCAAGTCACTTT 59.835 41.667 0.00 0.00 0.00 2.66
138 139 4.275936 CCAAGGTAAGGTCAAGTCACTTTG 59.724 45.833 0.00 0.00 0.00 2.77
139 140 4.772886 AGGTAAGGTCAAGTCACTTTGT 57.227 40.909 0.00 0.00 0.00 2.83
140 141 5.112129 AGGTAAGGTCAAGTCACTTTGTT 57.888 39.130 0.00 0.00 0.00 2.83
141 142 5.506708 AGGTAAGGTCAAGTCACTTTGTTT 58.493 37.500 0.00 0.00 0.00 2.83
142 143 5.357032 AGGTAAGGTCAAGTCACTTTGTTTG 59.643 40.000 0.00 0.00 0.00 2.93
143 144 5.355910 GGTAAGGTCAAGTCACTTTGTTTGA 59.644 40.000 0.00 0.00 0.00 2.69
144 145 4.965119 AGGTCAAGTCACTTTGTTTGAC 57.035 40.909 7.48 7.48 45.29 3.18
145 146 4.331968 AGGTCAAGTCACTTTGTTTGACA 58.668 39.130 15.46 0.00 46.90 3.58
146 147 4.949856 AGGTCAAGTCACTTTGTTTGACAT 59.050 37.500 15.46 7.78 46.90 3.06
147 148 5.418840 AGGTCAAGTCACTTTGTTTGACATT 59.581 36.000 15.46 3.59 46.90 2.71
148 149 6.601613 AGGTCAAGTCACTTTGTTTGACATTA 59.398 34.615 15.46 0.00 46.90 1.90
149 150 6.691388 GGTCAAGTCACTTTGTTTGACATTAC 59.309 38.462 15.46 0.00 46.90 1.89
150 151 7.415206 GGTCAAGTCACTTTGTTTGACATTACT 60.415 37.037 15.46 0.00 46.90 2.24
151 152 7.429340 GTCAAGTCACTTTGTTTGACATTACTG 59.571 37.037 10.37 0.00 45.32 2.74
152 153 7.335673 TCAAGTCACTTTGTTTGACATTACTGA 59.664 33.333 5.36 0.00 45.00 3.41
153 154 7.624360 AGTCACTTTGTTTGACATTACTGAA 57.376 32.000 5.36 0.00 45.00 3.02
154 155 8.225603 AGTCACTTTGTTTGACATTACTGAAT 57.774 30.769 5.36 0.00 45.00 2.57
155 156 9.337396 AGTCACTTTGTTTGACATTACTGAATA 57.663 29.630 5.36 0.00 45.00 1.75
166 167 9.476202 TTGACATTACTGAATATCAATACGAGG 57.524 33.333 0.00 0.00 34.32 4.63
167 168 7.598869 TGACATTACTGAATATCAATACGAGGC 59.401 37.037 0.00 0.00 25.29 4.70
168 169 7.441836 ACATTACTGAATATCAATACGAGGCA 58.558 34.615 0.00 0.00 0.00 4.75
169 170 7.931407 ACATTACTGAATATCAATACGAGGCAA 59.069 33.333 0.00 0.00 0.00 4.52
170 171 8.773645 CATTACTGAATATCAATACGAGGCAAA 58.226 33.333 0.00 0.00 0.00 3.68
171 172 6.851222 ACTGAATATCAATACGAGGCAAAG 57.149 37.500 0.00 0.00 0.00 2.77
172 173 5.237344 ACTGAATATCAATACGAGGCAAAGC 59.763 40.000 0.00 0.00 0.00 3.51
184 185 2.729378 GCAAAGCCTGCGAATCAAC 58.271 52.632 0.00 0.00 42.37 3.18
185 186 0.039256 GCAAAGCCTGCGAATCAACA 60.039 50.000 0.00 0.00 42.37 3.33
186 187 1.403249 GCAAAGCCTGCGAATCAACAT 60.403 47.619 0.00 0.00 42.37 2.71
187 188 2.256174 CAAAGCCTGCGAATCAACATG 58.744 47.619 0.00 0.00 0.00 3.21
188 189 1.538047 AAGCCTGCGAATCAACATGT 58.462 45.000 0.00 0.00 0.00 3.21
189 190 0.806868 AGCCTGCGAATCAACATGTG 59.193 50.000 0.00 0.00 0.00 3.21
190 191 0.179156 GCCTGCGAATCAACATGTGG 60.179 55.000 0.00 0.00 0.00 4.17
191 192 1.167851 CCTGCGAATCAACATGTGGT 58.832 50.000 0.00 0.00 0.00 4.16
192 193 1.541147 CCTGCGAATCAACATGTGGTT 59.459 47.619 0.00 0.00 41.47 3.67
204 205 3.955471 ACATGTGGTTGAGATGGTTAGG 58.045 45.455 0.00 0.00 29.21 2.69
205 206 3.330701 ACATGTGGTTGAGATGGTTAGGT 59.669 43.478 0.00 0.00 29.21 3.08
206 207 3.417069 TGTGGTTGAGATGGTTAGGTG 57.583 47.619 0.00 0.00 0.00 4.00
207 208 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
208 209 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
209 210 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
210 211 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
211 212 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
212 213 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
213 214 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
214 215 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
215 216 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
216 217 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
217 218 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
218 219 3.253220 TGGTTAGGTGGACAGTGGTATT 58.747 45.455 0.00 0.00 0.00 1.89
219 220 3.262405 TGGTTAGGTGGACAGTGGTATTC 59.738 47.826 0.00 0.00 0.00 1.75
220 221 3.370209 GGTTAGGTGGACAGTGGTATTCC 60.370 52.174 0.00 0.00 0.00 3.01
221 222 1.286248 AGGTGGACAGTGGTATTCCC 58.714 55.000 0.00 0.00 0.00 3.97
222 223 0.988832 GGTGGACAGTGGTATTCCCA 59.011 55.000 0.00 0.00 42.51 4.37
230 231 2.884412 TGGTATTCCCAACCCACCA 58.116 52.632 0.00 0.00 41.50 4.17
231 232 0.701731 TGGTATTCCCAACCCACCAG 59.298 55.000 0.00 0.00 41.50 4.00
232 233 0.033503 GGTATTCCCAACCCACCAGG 60.034 60.000 0.00 0.00 43.78 4.45
248 249 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
249 250 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
250 251 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
251 252 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
252 253 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
253 254 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
254 255 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
255 256 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
256 257 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
257 258 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
258 259 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
259 260 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
260 261 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
261 262 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
262 263 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
263 264 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
264 265 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
265 266 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
266 267 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
267 268 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
268 269 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
269 270 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
270 271 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
271 272 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
272 273 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
273 274 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
274 275 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
275 276 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
283 284 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
284 285 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
285 286 4.340950 GGATTTATTTCAGGATTTCCGGCA 59.659 41.667 0.00 0.00 42.08 5.69
286 287 5.163457 GGATTTATTTCAGGATTTCCGGCAA 60.163 40.000 0.00 0.00 42.08 4.52
287 288 5.930837 TTTATTTCAGGATTTCCGGCAAT 57.069 34.783 0.00 0.00 42.08 3.56
288 289 3.806625 ATTTCAGGATTTCCGGCAATG 57.193 42.857 3.34 0.00 42.08 2.82
289 290 0.817013 TTCAGGATTTCCGGCAATGC 59.183 50.000 10.26 10.26 42.08 3.56
290 291 1.064621 CAGGATTTCCGGCAATGCG 59.935 57.895 12.24 4.57 42.08 4.73
291 292 2.278792 GGATTTCCGGCAATGCGC 60.279 61.111 3.34 0.00 41.28 6.09
292 293 2.774799 GGATTTCCGGCAATGCGCT 61.775 57.895 9.73 0.00 41.91 5.92
293 294 1.139520 GATTTCCGGCAATGCGCTT 59.860 52.632 9.73 0.00 41.91 4.68
294 295 0.458370 GATTTCCGGCAATGCGCTTT 60.458 50.000 9.73 5.65 41.91 3.51
295 296 0.458370 ATTTCCGGCAATGCGCTTTC 60.458 50.000 9.73 3.08 41.91 2.62
296 297 1.800283 TTTCCGGCAATGCGCTTTCA 61.800 50.000 9.73 0.00 41.91 2.69
297 298 2.198906 TTCCGGCAATGCGCTTTCAG 62.199 55.000 9.73 0.00 41.91 3.02
298 299 2.562912 CGGCAATGCGCTTTCAGT 59.437 55.556 9.73 0.00 41.91 3.41
299 300 1.798725 CGGCAATGCGCTTTCAGTG 60.799 57.895 9.73 0.00 41.91 3.66
300 301 1.444895 GGCAATGCGCTTTCAGTGG 60.445 57.895 9.73 0.00 41.91 4.00
301 302 1.580942 GCAATGCGCTTTCAGTGGA 59.419 52.632 9.73 0.00 37.77 4.02
302 303 0.455633 GCAATGCGCTTTCAGTGGAG 60.456 55.000 9.73 0.00 37.77 3.86
303 304 0.169672 CAATGCGCTTTCAGTGGAGG 59.830 55.000 9.73 0.00 27.28 4.30
304 305 0.036732 AATGCGCTTTCAGTGGAGGA 59.963 50.000 9.73 0.00 27.28 3.71
305 306 0.392193 ATGCGCTTTCAGTGGAGGAG 60.392 55.000 9.73 0.00 27.28 3.69
306 307 1.293498 GCGCTTTCAGTGGAGGAGA 59.707 57.895 0.00 0.00 0.00 3.71
307 308 1.016653 GCGCTTTCAGTGGAGGAGAC 61.017 60.000 0.00 0.00 0.00 3.36
308 309 0.734253 CGCTTTCAGTGGAGGAGACG 60.734 60.000 0.00 0.00 0.00 4.18
309 310 0.318762 GCTTTCAGTGGAGGAGACGT 59.681 55.000 0.00 0.00 0.00 4.34
310 311 1.270358 GCTTTCAGTGGAGGAGACGTT 60.270 52.381 0.00 0.00 0.00 3.99
311 312 2.807108 GCTTTCAGTGGAGGAGACGTTT 60.807 50.000 0.00 0.00 0.00 3.60
312 313 2.814280 TTCAGTGGAGGAGACGTTTC 57.186 50.000 0.00 0.00 0.00 2.78
313 314 0.966920 TCAGTGGAGGAGACGTTTCC 59.033 55.000 17.16 17.16 37.52 3.13
314 315 0.388649 CAGTGGAGGAGACGTTTCCG 60.389 60.000 18.59 0.51 42.29 4.30
332 333 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
333 334 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
334 335 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
335 336 3.392595 GACGACGAGGTGCCTACGG 62.393 68.421 0.00 1.18 0.00 4.02
336 337 3.437795 CGACGAGGTGCCTACGGT 61.438 66.667 12.22 3.01 0.00 4.83
337 338 2.181021 GACGAGGTGCCTACGGTG 59.819 66.667 12.22 0.00 0.00 4.94
338 339 2.282674 ACGAGGTGCCTACGGTGA 60.283 61.111 12.22 0.00 0.00 4.02
339 340 2.181021 CGAGGTGCCTACGGTGAC 59.819 66.667 0.00 0.00 0.00 3.67
340 341 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
341 342 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
342 343 0.320697 GAGGTGCCTACGGTGACTTT 59.679 55.000 0.00 0.00 0.00 2.66
343 344 0.034896 AGGTGCCTACGGTGACTTTG 59.965 55.000 0.00 0.00 0.00 2.77
344 345 0.250166 GGTGCCTACGGTGACTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
345 346 1.001181 GGTGCCTACGGTGACTTTGTA 59.999 52.381 0.00 0.00 0.00 2.41
346 347 2.548493 GGTGCCTACGGTGACTTTGTAA 60.548 50.000 0.00 0.00 0.00 2.41
347 348 3.132925 GTGCCTACGGTGACTTTGTAAA 58.867 45.455 0.00 0.00 0.00 2.01
348 349 3.749609 GTGCCTACGGTGACTTTGTAAAT 59.250 43.478 0.00 0.00 0.00 1.40
349 350 3.998341 TGCCTACGGTGACTTTGTAAATC 59.002 43.478 0.00 0.00 0.00 2.17
350 351 4.251268 GCCTACGGTGACTTTGTAAATCT 58.749 43.478 0.00 0.00 0.00 2.40
351 352 4.329256 GCCTACGGTGACTTTGTAAATCTC 59.671 45.833 0.00 0.00 0.00 2.75
352 353 5.475719 CCTACGGTGACTTTGTAAATCTCA 58.524 41.667 0.00 0.00 0.00 3.27
353 354 5.929992 CCTACGGTGACTTTGTAAATCTCAA 59.070 40.000 0.00 0.00 0.00 3.02
354 355 5.924475 ACGGTGACTTTGTAAATCTCAAG 57.076 39.130 0.00 0.00 0.00 3.02
355 356 5.607477 ACGGTGACTTTGTAAATCTCAAGA 58.393 37.500 0.00 0.00 0.00 3.02
356 357 6.231211 ACGGTGACTTTGTAAATCTCAAGAT 58.769 36.000 0.00 0.00 36.07 2.40
357 358 6.147821 ACGGTGACTTTGTAAATCTCAAGATG 59.852 38.462 0.00 0.00 34.49 2.90
358 359 6.368791 CGGTGACTTTGTAAATCTCAAGATGA 59.631 38.462 0.00 0.00 34.49 2.92
359 360 7.065085 CGGTGACTTTGTAAATCTCAAGATGAT 59.935 37.037 0.00 0.00 34.49 2.45
360 361 8.180267 GGTGACTTTGTAAATCTCAAGATGATG 58.820 37.037 0.00 0.00 34.49 3.07
361 362 8.725148 GTGACTTTGTAAATCTCAAGATGATGT 58.275 33.333 0.00 0.00 34.49 3.06
362 363 8.724229 TGACTTTGTAAATCTCAAGATGATGTG 58.276 33.333 0.00 0.00 34.49 3.21
363 364 7.533426 ACTTTGTAAATCTCAAGATGATGTGC 58.467 34.615 0.00 0.00 34.49 4.57
364 365 7.392673 ACTTTGTAAATCTCAAGATGATGTGCT 59.607 33.333 0.00 0.00 34.49 4.40
365 366 6.673154 TGTAAATCTCAAGATGATGTGCTG 57.327 37.500 0.00 0.00 34.49 4.41
366 367 5.587443 TGTAAATCTCAAGATGATGTGCTGG 59.413 40.000 0.00 0.00 34.49 4.85
367 368 2.034104 TCTCAAGATGATGTGCTGGC 57.966 50.000 0.00 0.00 0.00 4.85
368 369 1.558294 TCTCAAGATGATGTGCTGGCT 59.442 47.619 0.00 0.00 0.00 4.75
369 370 1.941294 CTCAAGATGATGTGCTGGCTC 59.059 52.381 0.00 0.00 0.00 4.70
370 371 1.279846 TCAAGATGATGTGCTGGCTCA 59.720 47.619 0.00 0.00 0.00 4.26
371 372 1.671328 CAAGATGATGTGCTGGCTCAG 59.329 52.381 3.83 0.00 34.12 3.35
372 373 0.910338 AGATGATGTGCTGGCTCAGT 59.090 50.000 3.83 0.00 33.43 3.41
373 374 1.134461 AGATGATGTGCTGGCTCAGTC 60.134 52.381 3.83 2.71 33.43 3.51
374 375 0.910338 ATGATGTGCTGGCTCAGTCT 59.090 50.000 3.83 0.00 33.43 3.24
375 376 0.689055 TGATGTGCTGGCTCAGTCTT 59.311 50.000 3.83 0.00 33.43 3.01
376 377 1.072806 TGATGTGCTGGCTCAGTCTTT 59.927 47.619 3.83 0.00 33.43 2.52
377 378 1.736681 GATGTGCTGGCTCAGTCTTTC 59.263 52.381 3.83 0.00 33.43 2.62
378 379 0.601046 TGTGCTGGCTCAGTCTTTCG 60.601 55.000 4.45 0.00 33.43 3.46
379 380 0.319900 GTGCTGGCTCAGTCTTTCGA 60.320 55.000 4.45 0.00 33.43 3.71
380 381 0.392706 TGCTGGCTCAGTCTTTCGAA 59.607 50.000 0.00 0.00 33.43 3.71
381 382 1.074752 GCTGGCTCAGTCTTTCGAAG 58.925 55.000 0.00 0.00 33.43 3.79
382 383 1.719600 CTGGCTCAGTCTTTCGAAGG 58.280 55.000 0.00 0.00 0.00 3.46
383 384 1.001406 CTGGCTCAGTCTTTCGAAGGT 59.999 52.381 7.20 0.00 0.00 3.50
384 385 1.270305 TGGCTCAGTCTTTCGAAGGTG 60.270 52.381 7.20 0.00 0.00 4.00
385 386 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
386 387 1.606737 GCTCAGTCTTTCGAAGGTGCT 60.607 52.381 7.20 4.49 0.00 4.40
387 388 2.333014 CTCAGTCTTTCGAAGGTGCTC 58.667 52.381 7.20 0.00 0.00 4.26
388 389 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
389 390 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
390 391 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
391 392 3.862267 CAGTCTTTCGAAGGTGCTCATAG 59.138 47.826 7.20 0.00 0.00 2.23
392 393 3.118956 AGTCTTTCGAAGGTGCTCATAGG 60.119 47.826 7.20 0.00 0.00 2.57
393 394 2.168521 TCTTTCGAAGGTGCTCATAGGG 59.831 50.000 7.20 0.00 0.00 3.53
394 395 1.860641 TTCGAAGGTGCTCATAGGGA 58.139 50.000 0.00 0.00 0.00 4.20
395 396 2.088104 TCGAAGGTGCTCATAGGGAT 57.912 50.000 0.00 0.00 0.00 3.85
396 397 3.238788 TCGAAGGTGCTCATAGGGATA 57.761 47.619 0.00 0.00 0.00 2.59
397 398 3.157881 TCGAAGGTGCTCATAGGGATAG 58.842 50.000 0.00 0.00 0.00 2.08
398 399 3.157881 CGAAGGTGCTCATAGGGATAGA 58.842 50.000 0.00 0.00 0.00 1.98
399 400 3.192422 CGAAGGTGCTCATAGGGATAGAG 59.808 52.174 0.00 0.00 0.00 2.43
400 401 3.913370 AGGTGCTCATAGGGATAGAGT 57.087 47.619 0.00 0.00 0.00 3.24
401 402 3.505386 AGGTGCTCATAGGGATAGAGTG 58.495 50.000 0.00 0.00 0.00 3.51
402 403 3.116939 AGGTGCTCATAGGGATAGAGTGT 60.117 47.826 0.00 0.00 0.00 3.55
403 404 3.006323 GGTGCTCATAGGGATAGAGTGTG 59.994 52.174 0.00 0.00 0.00 3.82
404 405 2.630098 TGCTCATAGGGATAGAGTGTGC 59.370 50.000 0.00 0.00 0.00 4.57
405 406 2.352225 GCTCATAGGGATAGAGTGTGCG 60.352 54.545 0.00 0.00 0.00 5.34
406 407 2.887783 CTCATAGGGATAGAGTGTGCGT 59.112 50.000 0.00 0.00 0.00 5.24
407 408 2.623416 TCATAGGGATAGAGTGTGCGTG 59.377 50.000 0.00 0.00 0.00 5.34
408 409 2.139323 TAGGGATAGAGTGTGCGTGT 57.861 50.000 0.00 0.00 0.00 4.49
409 410 0.532573 AGGGATAGAGTGTGCGTGTG 59.467 55.000 0.00 0.00 0.00 3.82
410 411 0.246635 GGGATAGAGTGTGCGTGTGT 59.753 55.000 0.00 0.00 0.00 3.72
411 412 1.350193 GGATAGAGTGTGCGTGTGTG 58.650 55.000 0.00 0.00 0.00 3.82
412 413 0.716108 GATAGAGTGTGCGTGTGTGC 59.284 55.000 0.00 0.00 0.00 4.57
413 414 1.008875 ATAGAGTGTGCGTGTGTGCG 61.009 55.000 0.00 0.00 37.81 5.34
414 415 2.344521 TAGAGTGTGCGTGTGTGCGT 62.345 55.000 0.00 0.00 37.81 5.24
415 416 2.808958 GAGTGTGCGTGTGTGCGTT 61.809 57.895 0.00 0.00 37.81 4.84
416 417 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
417 418 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
418 419 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
419 420 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
420 421 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
421 422 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
422 423 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
423 424 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
424 425 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
425 426 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
426 427 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
427 428 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
428 429 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
429 430 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
430 431 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
431 432 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
432 433 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
433 434 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
434 435 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
435 436 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
436 437 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
437 438 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
438 439 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
439 440 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
440 441 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
441 442 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
442 443 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
443 444 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
444 445 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
445 446 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
446 447 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
447 448 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
448 449 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
451 452 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
452 453 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
453 454 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
454 455 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
455 456 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
456 457 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
457 458 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
458 459 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
459 460 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
460 461 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
461 462 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
462 463 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
463 464 0.319555 TGAGCGCTTGTGTCTGTACC 60.320 55.000 13.26 0.00 0.00 3.34
464 465 1.344942 GAGCGCTTGTGTCTGTACCG 61.345 60.000 13.26 0.00 0.00 4.02
465 466 1.372499 GCGCTTGTGTCTGTACCGA 60.372 57.895 0.00 0.00 0.00 4.69
466 467 0.736325 GCGCTTGTGTCTGTACCGAT 60.736 55.000 0.00 0.00 0.00 4.18
467 468 0.992072 CGCTTGTGTCTGTACCGATG 59.008 55.000 0.00 0.00 0.00 3.84
468 469 0.721718 GCTTGTGTCTGTACCGATGC 59.278 55.000 0.00 0.00 0.00 3.91
469 470 1.673033 GCTTGTGTCTGTACCGATGCT 60.673 52.381 0.00 0.00 0.00 3.79
470 471 2.416836 GCTTGTGTCTGTACCGATGCTA 60.417 50.000 0.00 0.00 0.00 3.49
471 472 3.845178 CTTGTGTCTGTACCGATGCTAA 58.155 45.455 0.00 0.00 0.00 3.09
472 473 3.945981 TGTGTCTGTACCGATGCTAAA 57.054 42.857 0.00 0.00 0.00 1.85
473 474 4.260139 TGTGTCTGTACCGATGCTAAAA 57.740 40.909 0.00 0.00 0.00 1.52
474 475 4.633175 TGTGTCTGTACCGATGCTAAAAA 58.367 39.130 0.00 0.00 0.00 1.94
500 501 3.541632 ACGAGGCAAAGTCTTCAGAAAA 58.458 40.909 0.00 0.00 0.00 2.29
525 530 3.659183 ACTGATTGGAAGATCAAGGGG 57.341 47.619 0.00 0.00 35.74 4.79
526 531 2.243221 ACTGATTGGAAGATCAAGGGGG 59.757 50.000 0.00 0.00 35.74 5.40
553 560 8.408043 AAAATCAACAATCCTCACAATAGACA 57.592 30.769 0.00 0.00 0.00 3.41
563 570 7.727578 TCCTCACAATAGACAATAAGGTGTA 57.272 36.000 0.00 0.00 0.00 2.90
617 624 0.255033 GGGTGATTTAGGCCGAGGTT 59.745 55.000 0.00 0.00 0.00 3.50
618 625 1.379527 GGTGATTTAGGCCGAGGTTG 58.620 55.000 0.00 0.00 0.00 3.77
619 626 1.339727 GGTGATTTAGGCCGAGGTTGT 60.340 52.381 0.00 0.00 0.00 3.32
620 627 2.433436 GTGATTTAGGCCGAGGTTGTT 58.567 47.619 0.00 0.00 0.00 2.83
647 654 2.031516 GGTCGACGACTCCGAGTCA 61.032 63.158 25.87 5.86 45.30 3.41
964 983 0.671251 CGAATCGGGAAGAGGAGGAG 59.329 60.000 0.00 0.00 0.00 3.69
1074 1095 0.457851 AGTCGGAGATCAAGAAGGCG 59.542 55.000 0.00 0.00 40.67 5.52
1104 1125 2.764547 GTAGCCCTCCCGCTCCTT 60.765 66.667 0.00 0.00 40.39 3.36
1107 1128 2.531483 TAGCCCTCCCGCTCCTTCTT 62.531 60.000 0.00 0.00 40.39 2.52
1110 1131 2.664081 CCTCCCGCTCCTTCTTGCT 61.664 63.158 0.00 0.00 0.00 3.91
1112 1133 0.322008 CTCCCGCTCCTTCTTGCTTT 60.322 55.000 0.00 0.00 0.00 3.51
1113 1134 0.606401 TCCCGCTCCTTCTTGCTTTG 60.606 55.000 0.00 0.00 0.00 2.77
1114 1135 1.211190 CCGCTCCTTCTTGCTTTGC 59.789 57.895 0.00 0.00 0.00 3.68
1115 1136 1.239968 CCGCTCCTTCTTGCTTTGCT 61.240 55.000 0.00 0.00 0.00 3.91
1116 1137 0.109873 CGCTCCTTCTTGCTTTGCTG 60.110 55.000 0.00 0.00 0.00 4.41
1119 1140 0.819259 TCCTTCTTGCTTTGCTGCGT 60.819 50.000 0.00 0.00 35.36 5.24
1183 1226 3.318384 TTGCAGGCGAGGCAGGTA 61.318 61.111 0.00 0.00 43.05 3.08
1210 1253 2.236395 AGACAAGAACCCTAATGACCCG 59.764 50.000 0.00 0.00 0.00 5.28
1237 1280 2.160205 GCAGGGAAGTTCCAGGTAAAC 58.840 52.381 23.33 4.19 38.64 2.01
1256 1299 1.683385 ACTGTTTTGCCTTTGCTCCTC 59.317 47.619 0.00 0.00 38.71 3.71
1279 1322 4.796495 ATCCGCCCACCTTTCGCC 62.796 66.667 0.00 0.00 0.00 5.54
1368 1412 5.547465 TCAACCCGATTATAGGCTTACATG 58.453 41.667 0.00 0.00 0.00 3.21
1430 1474 2.163509 CTCCAGACGAGTCTTGAAGGA 58.836 52.381 2.55 6.46 37.98 3.36
1431 1475 2.163412 CTCCAGACGAGTCTTGAAGGAG 59.837 54.545 17.37 17.37 38.78 3.69
1433 1477 2.163509 CAGACGAGTCTTGAAGGAGGA 58.836 52.381 2.55 0.00 37.98 3.71
1437 1481 2.494073 ACGAGTCTTGAAGGAGGATGTC 59.506 50.000 0.00 0.00 0.00 3.06
1542 1592 5.411781 ACACATTCATCGAGTTAAGGAGAC 58.588 41.667 0.00 0.00 0.00 3.36
1642 1692 9.282247 GAATCAGTAATTTTTGTGTCATAGCTG 57.718 33.333 0.00 0.00 0.00 4.24
1652 1702 7.582667 TTTGTGTCATAGCTGCTCTATACTA 57.417 36.000 4.91 0.00 36.26 1.82
2047 2104 7.042187 GGATATTGCTCACACTCTTCAGTAATG 60.042 40.741 0.00 0.00 0.00 1.90
2048 2105 4.871933 TGCTCACACTCTTCAGTAATGA 57.128 40.909 0.00 0.00 0.00 2.57
2049 2106 5.213891 TGCTCACACTCTTCAGTAATGAA 57.786 39.130 5.38 5.38 30.24 2.57
2050 2107 4.991056 TGCTCACACTCTTCAGTAATGAAC 59.009 41.667 0.56 0.00 30.24 3.18
2051 2108 4.390297 GCTCACACTCTTCAGTAATGAACC 59.610 45.833 0.56 0.00 30.24 3.62
2052 2109 5.788450 CTCACACTCTTCAGTAATGAACCT 58.212 41.667 0.56 0.00 30.24 3.50
2053 2110 6.174720 TCACACTCTTCAGTAATGAACCTT 57.825 37.500 0.56 0.00 28.39 3.50
2253 2318 4.154195 ACTCATCAATACGAACTTTGCACC 59.846 41.667 0.00 0.00 0.00 5.01
2254 2319 4.323417 TCATCAATACGAACTTTGCACCT 58.677 39.130 0.00 0.00 0.00 4.00
2296 2361 3.805207 TCAGATTCTGATGCAGTCATGG 58.195 45.455 12.38 0.00 35.39 3.66
2309 2374 3.087031 CAGTCATGGAGGTTTGATGCTT 58.913 45.455 0.00 0.00 0.00 3.91
2352 2417 2.365617 TCAGGAAAATCTAGCTAGGGCG 59.634 50.000 20.58 0.00 44.37 6.13
2411 2476 0.183492 AACTGGTCTGAGCCTGCAAA 59.817 50.000 4.17 0.00 0.00 3.68
2634 2907 9.261180 AGTTCGTATTATGTATTTCTCATGGTG 57.739 33.333 0.00 0.00 0.00 4.17
2635 2908 9.256477 GTTCGTATTATGTATTTCTCATGGTGA 57.744 33.333 0.00 0.00 0.00 4.02
2958 3231 3.072768 TCGGGGCTTTTGTAAAGGACTAA 59.927 43.478 1.78 0.00 0.00 2.24
3248 3521 5.300539 TGCAAGACAAAATGCAGGTTTAGTA 59.699 36.000 0.00 0.00 46.87 1.82
3385 3658 5.865085 TCTGCTGAATGGTAAACTACAACT 58.135 37.500 0.00 0.00 0.00 3.16
3675 3948 9.612066 TTATTTGATGTGTTCATGAGCATAGTA 57.388 29.630 15.71 3.67 33.34 1.82
3678 3951 8.822652 TTGATGTGTTCATGAGCATAGTATAG 57.177 34.615 15.71 0.00 33.34 1.31
3886 4243 3.460857 AGGATGCACGGAAGATCTAAC 57.539 47.619 0.00 0.00 0.00 2.34
3969 4326 7.607250 ACAATGCTATAGGTAGACTAGAATGC 58.393 38.462 1.04 0.00 34.56 3.56
3987 4344 5.531287 AGAATGCGTTTACTGAACCTTTTCT 59.469 36.000 0.00 0.00 34.67 2.52
4056 4413 1.945394 CTGTATGCTCTGTTGGATGGC 59.055 52.381 0.00 0.00 0.00 4.40
4104 4461 2.294512 CTCCCTCTTTTTGTCCTGTTGC 59.705 50.000 0.00 0.00 0.00 4.17
4125 4482 1.743431 CGTTGTCCTGCAGCATATGGA 60.743 52.381 8.66 0.00 0.00 3.41
4338 4695 9.671279 TTGATATGGTTTATCTCGATTGCATAT 57.329 29.630 0.00 0.00 0.00 1.78
4360 4717 2.162408 GTGATACAGTGCTTCTTTGGGC 59.838 50.000 0.00 0.00 0.00 5.36
4377 4734 1.242076 GGCTGTGAGTGTTCATGCTT 58.758 50.000 0.00 0.00 36.53 3.91
4659 5036 5.123820 TGTTATGTGCCTTGTATTCTTCAGC 59.876 40.000 0.00 0.00 0.00 4.26
4892 5269 2.572290 GGTGTTAAGCTCAACAGTGGT 58.428 47.619 1.57 0.00 39.02 4.16
5169 5547 2.621526 ACTTTTCAAACTAACCTGGGCG 59.378 45.455 0.00 0.00 0.00 6.13
5171 5549 1.886886 TTCAAACTAACCTGGGCGAC 58.113 50.000 0.00 0.00 0.00 5.19
5176 5554 0.320697 ACTAACCTGGGCGACAGTTC 59.679 55.000 0.00 0.00 46.06 3.01
5238 5616 8.348507 ACAAGACACTGAGAATTCATTTTCTTC 58.651 33.333 8.44 0.00 33.38 2.87
5550 5932 3.181459 TGTGTTAAGGCTGCTGTTACAGA 60.181 43.478 17.40 0.58 40.25 3.41
5551 5933 3.813166 GTGTTAAGGCTGCTGTTACAGAA 59.187 43.478 17.40 4.37 40.25 3.02
5552 5934 4.065088 TGTTAAGGCTGCTGTTACAGAAG 58.935 43.478 17.40 16.54 40.02 2.85
5684 6066 2.099062 GCTGATGAAGCGCGTTGG 59.901 61.111 8.43 0.00 43.45 3.77
5698 6107 0.798776 CGTTGGAGTTGATGTCCTGC 59.201 55.000 0.00 0.00 34.86 4.85
5729 6139 6.879400 TGCAAAAACTGTACATTTTTAGGGT 58.121 32.000 20.30 6.08 37.19 4.34
5763 6173 6.560003 TTTGATGAATACCAGAAGGAGCTA 57.440 37.500 0.00 0.00 38.69 3.32
5814 6232 4.456566 GCAATGTGCAATGGGAAAAAGATT 59.543 37.500 0.00 0.00 44.26 2.40
5820 6238 8.688747 TGTGCAATGGGAAAAAGATTAAAAAT 57.311 26.923 0.00 0.00 0.00 1.82
5822 6240 9.611284 GTGCAATGGGAAAAAGATTAAAAATTC 57.389 29.630 0.00 0.00 0.00 2.17
5823 6241 9.571816 TGCAATGGGAAAAAGATTAAAAATTCT 57.428 25.926 0.00 0.00 0.00 2.40
5839 6257 9.651913 TTAAAAATTCTGAAATGATAAGTGCCC 57.348 29.630 0.00 0.00 0.00 5.36
5842 6260 4.524802 TCTGAAATGATAAGTGCCCCAT 57.475 40.909 0.00 0.00 0.00 4.00
5864 6282 1.223417 GTGGCACAAAGCAACATGGC 61.223 55.000 13.86 0.00 46.95 4.40
5865 6283 3.566194 GTGGCACAAAGCAACATGGCT 62.566 52.381 13.86 0.00 46.95 4.75
5880 6298 1.803289 GGCTCAAACGCCTCCATTC 59.197 57.895 0.00 0.00 46.63 2.67
5903 6321 3.257873 TCATCCATTTTGCCACGTCAAAT 59.742 39.130 3.55 0.00 36.04 2.32
5905 6323 4.433186 TCCATTTTGCCACGTCAAATAG 57.567 40.909 3.55 0.74 36.04 1.73
5929 6347 7.874940 AGATGACATCAACGAAATCTTTTTGA 58.125 30.769 17.57 0.00 32.71 2.69
6009 6427 7.750458 CCGTTTTCATCATTAAATCCATATCGG 59.250 37.037 0.00 0.00 0.00 4.18
6031 6449 5.352284 GGCGAGATCTTCAAAACTAGATCA 58.648 41.667 12.93 0.00 39.50 2.92
6035 6453 7.516470 GCGAGATCTTCAAAACTAGATCACATG 60.516 40.741 12.93 0.00 39.50 3.21
6056 6474 9.653067 CACATGTTGTTATGTTTTAACGACTTA 57.347 29.630 13.99 0.21 40.63 2.24
6087 6505 5.261209 GCCAAAAGTTGCCATGATATGTA 57.739 39.130 0.00 0.00 0.00 2.29
6088 6506 5.043248 GCCAAAAGTTGCCATGATATGTAC 58.957 41.667 0.00 0.00 0.00 2.90
6089 6507 5.163519 GCCAAAAGTTGCCATGATATGTACT 60.164 40.000 0.00 0.00 0.00 2.73
6094 6512 9.632638 AAAAGTTGCCATGATATGTACTATCTT 57.367 29.630 0.00 5.16 37.67 2.40
6153 6593 8.592809 ACTTTTCTAATTGACCATGGCAATTTA 58.407 29.630 32.84 24.31 41.71 1.40
6155 6595 8.945481 TTTCTAATTGACCATGGCAATTTATG 57.055 30.769 32.84 25.79 41.71 1.90
6254 6695 7.775120 AGATCATGGCAATTTTAGTTTACAGG 58.225 34.615 0.00 0.00 0.00 4.00
6260 6701 6.099341 GGCAATTTTAGTTTACAGGTCATGG 58.901 40.000 0.00 0.00 0.00 3.66
6284 6725 6.206438 GGCAATTTTTGTATTTTCACCATGGT 59.794 34.615 13.00 13.00 0.00 3.55
6286 6727 8.945057 GCAATTTTTGTATTTTCACCATGGTAT 58.055 29.630 19.28 10.22 0.00 2.73
6327 6771 3.373748 TGGCAAGTTTAGTGCATGTATCG 59.626 43.478 0.00 0.00 44.07 2.92
6330 6774 4.092821 GCAAGTTTAGTGCATGTATCGTGA 59.907 41.667 0.00 0.00 41.80 4.35
6340 6784 7.589395 AGTGCATGTATCGTGACAAATTTAAA 58.411 30.769 0.00 0.00 31.83 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
16 17 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
17 18 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
18 19 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
19 20 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
20 21 5.240121 TCTGTTGGGGAACGTAGTAATTTC 58.760 41.667 0.00 0.00 45.00 2.17
21 22 5.231702 TCTGTTGGGGAACGTAGTAATTT 57.768 39.130 0.00 0.00 45.00 1.82
22 23 4.895668 TCTGTTGGGGAACGTAGTAATT 57.104 40.909 0.00 0.00 45.00 1.40
23 24 4.895668 TTCTGTTGGGGAACGTAGTAAT 57.104 40.909 0.00 0.00 45.00 1.89
24 25 4.686191 TTTCTGTTGGGGAACGTAGTAA 57.314 40.909 0.00 0.00 45.00 2.24
25 26 4.344679 TCTTTTCTGTTGGGGAACGTAGTA 59.655 41.667 0.00 0.00 45.00 1.82
27 28 3.735591 TCTTTTCTGTTGGGGAACGTAG 58.264 45.455 0.00 0.00 0.00 3.51
28 29 3.842007 TCTTTTCTGTTGGGGAACGTA 57.158 42.857 0.00 0.00 0.00 3.57
29 30 2.721425 TCTTTTCTGTTGGGGAACGT 57.279 45.000 0.00 0.00 0.00 3.99
30 31 3.568007 TCATTCTTTTCTGTTGGGGAACG 59.432 43.478 0.00 0.00 0.00 3.95
31 32 4.556699 CGTCATTCTTTTCTGTTGGGGAAC 60.557 45.833 0.00 0.00 0.00 3.62
32 33 3.568007 CGTCATTCTTTTCTGTTGGGGAA 59.432 43.478 0.00 0.00 0.00 3.97
33 34 3.146066 CGTCATTCTTTTCTGTTGGGGA 58.854 45.455 0.00 0.00 0.00 4.81
34 35 3.146066 TCGTCATTCTTTTCTGTTGGGG 58.854 45.455 0.00 0.00 0.00 4.96
35 36 4.829064 TTCGTCATTCTTTTCTGTTGGG 57.171 40.909 0.00 0.00 0.00 4.12
36 37 5.853282 GTGATTCGTCATTCTTTTCTGTTGG 59.147 40.000 0.00 0.00 0.00 3.77
37 38 5.853282 GGTGATTCGTCATTCTTTTCTGTTG 59.147 40.000 0.00 0.00 0.00 3.33
38 39 5.765182 AGGTGATTCGTCATTCTTTTCTGTT 59.235 36.000 0.00 0.00 0.00 3.16
39 40 5.308825 AGGTGATTCGTCATTCTTTTCTGT 58.691 37.500 0.00 0.00 0.00 3.41
40 41 5.869753 AGGTGATTCGTCATTCTTTTCTG 57.130 39.130 0.00 0.00 0.00 3.02
41 42 6.234177 AGAAGGTGATTCGTCATTCTTTTCT 58.766 36.000 3.82 0.00 43.16 2.52
42 43 6.147821 TGAGAAGGTGATTCGTCATTCTTTTC 59.852 38.462 8.95 0.00 43.16 2.29
43 44 5.997746 TGAGAAGGTGATTCGTCATTCTTTT 59.002 36.000 8.95 0.00 43.16 2.27
44 45 5.409826 GTGAGAAGGTGATTCGTCATTCTTT 59.590 40.000 8.95 0.00 43.16 2.52
45 46 4.932200 GTGAGAAGGTGATTCGTCATTCTT 59.068 41.667 8.95 0.00 43.16 2.52
46 47 4.499183 GTGAGAAGGTGATTCGTCATTCT 58.501 43.478 7.81 7.81 43.16 2.40
47 48 3.619038 GGTGAGAAGGTGATTCGTCATTC 59.381 47.826 0.00 0.00 43.16 2.67
48 49 3.600388 GGTGAGAAGGTGATTCGTCATT 58.400 45.455 0.00 0.00 43.16 2.57
49 50 2.093447 GGGTGAGAAGGTGATTCGTCAT 60.093 50.000 0.00 0.00 43.16 3.06
50 51 1.275291 GGGTGAGAAGGTGATTCGTCA 59.725 52.381 0.00 0.00 43.16 4.35
51 52 1.736032 CGGGTGAGAAGGTGATTCGTC 60.736 57.143 0.00 0.00 43.16 4.20
52 53 0.246635 CGGGTGAGAAGGTGATTCGT 59.753 55.000 0.00 0.00 43.16 3.85
53 54 0.530744 TCGGGTGAGAAGGTGATTCG 59.469 55.000 0.00 0.00 43.16 3.34
54 55 1.740718 GCTCGGGTGAGAAGGTGATTC 60.741 57.143 0.00 0.00 45.57 2.52
55 56 0.250513 GCTCGGGTGAGAAGGTGATT 59.749 55.000 0.00 0.00 45.57 2.57
56 57 0.616111 AGCTCGGGTGAGAAGGTGAT 60.616 55.000 0.00 0.00 45.57 3.06
57 58 0.832135 AAGCTCGGGTGAGAAGGTGA 60.832 55.000 0.00 0.00 45.57 4.02
58 59 0.671781 CAAGCTCGGGTGAGAAGGTG 60.672 60.000 0.00 0.00 45.57 4.00
59 60 0.832135 TCAAGCTCGGGTGAGAAGGT 60.832 55.000 0.00 0.00 45.57 3.50
60 61 0.390472 GTCAAGCTCGGGTGAGAAGG 60.390 60.000 0.00 0.00 45.57 3.46
61 62 0.734253 CGTCAAGCTCGGGTGAGAAG 60.734 60.000 0.00 0.00 45.57 2.85
62 63 1.289066 CGTCAAGCTCGGGTGAGAA 59.711 57.895 0.00 0.00 45.57 2.87
63 64 2.962569 CGTCAAGCTCGGGTGAGA 59.037 61.111 0.00 0.00 45.57 3.27
64 65 2.811317 GCGTCAAGCTCGGGTGAG 60.811 66.667 0.00 0.00 45.49 3.51
65 66 4.717629 CGCGTCAAGCTCGGGTGA 62.718 66.667 0.00 0.00 45.59 4.02
81 82 1.730902 CATATCAGCGACGGAGCCG 60.731 63.158 7.48 7.48 46.03 5.52
82 83 2.024319 GCATATCAGCGACGGAGCC 61.024 63.158 0.00 0.00 38.01 4.70
83 84 1.280886 CTGCATATCAGCGACGGAGC 61.281 60.000 0.00 0.00 35.78 4.70
84 85 2.806577 CTGCATATCAGCGACGGAG 58.193 57.895 0.00 0.00 35.78 4.63
99 100 3.435186 GGAGGTCCGCAAAGCTGC 61.435 66.667 0.00 0.00 45.75 5.25
100 101 1.580845 CTTGGAGGTCCGCAAAGCTG 61.581 60.000 0.00 0.00 39.43 4.24
101 102 1.302832 CTTGGAGGTCCGCAAAGCT 60.303 57.895 0.00 0.00 39.43 3.74
102 103 2.335712 CCTTGGAGGTCCGCAAAGC 61.336 63.158 4.22 0.00 39.43 3.51
103 104 3.987404 CCTTGGAGGTCCGCAAAG 58.013 61.111 2.76 2.76 39.43 2.77
112 113 2.637872 TGACTTGACCTTACCTTGGAGG 59.362 50.000 0.00 0.00 42.49 4.30
113 114 3.325135 AGTGACTTGACCTTACCTTGGAG 59.675 47.826 0.00 0.00 0.00 3.86
114 115 3.314693 AGTGACTTGACCTTACCTTGGA 58.685 45.455 0.00 0.00 0.00 3.53
115 116 3.771577 AGTGACTTGACCTTACCTTGG 57.228 47.619 0.00 0.00 0.00 3.61
116 117 4.881850 ACAAAGTGACTTGACCTTACCTTG 59.118 41.667 0.00 0.00 0.00 3.61
117 118 5.112129 ACAAAGTGACTTGACCTTACCTT 57.888 39.130 0.00 0.00 0.00 3.50
118 119 4.772886 ACAAAGTGACTTGACCTTACCT 57.227 40.909 0.00 0.00 0.00 3.08
119 120 5.355910 TCAAACAAAGTGACTTGACCTTACC 59.644 40.000 0.00 0.00 0.00 2.85
120 121 6.128117 TGTCAAACAAAGTGACTTGACCTTAC 60.128 38.462 10.76 2.63 44.70 2.34
121 122 5.941058 TGTCAAACAAAGTGACTTGACCTTA 59.059 36.000 10.76 0.00 44.70 2.69
122 123 4.764823 TGTCAAACAAAGTGACTTGACCTT 59.235 37.500 10.76 0.00 44.70 3.50
123 124 4.331968 TGTCAAACAAAGTGACTTGACCT 58.668 39.130 10.76 0.00 44.70 3.85
124 125 4.695217 TGTCAAACAAAGTGACTTGACC 57.305 40.909 10.76 0.00 44.70 4.02
125 126 7.429340 CAGTAATGTCAAACAAAGTGACTTGAC 59.571 37.037 0.00 2.87 44.70 3.18
126 127 7.335673 TCAGTAATGTCAAACAAAGTGACTTGA 59.664 33.333 0.00 0.00 44.70 3.02
127 128 7.471721 TCAGTAATGTCAAACAAAGTGACTTG 58.528 34.615 0.00 0.00 44.70 3.16
128 129 7.624360 TCAGTAATGTCAAACAAAGTGACTT 57.376 32.000 6.17 0.00 44.70 3.01
129 130 7.624360 TTCAGTAATGTCAAACAAAGTGACT 57.376 32.000 6.17 0.00 44.70 3.41
141 142 7.598869 GCCTCGTATTGATATTCAGTAATGTCA 59.401 37.037 0.00 0.00 40.30 3.58
142 143 7.598869 TGCCTCGTATTGATATTCAGTAATGTC 59.401 37.037 0.00 0.00 34.68 3.06
143 144 7.441836 TGCCTCGTATTGATATTCAGTAATGT 58.558 34.615 0.00 0.00 0.00 2.71
144 145 7.889589 TGCCTCGTATTGATATTCAGTAATG 57.110 36.000 0.00 0.00 0.00 1.90
145 146 8.902540 TTTGCCTCGTATTGATATTCAGTAAT 57.097 30.769 0.00 0.00 0.00 1.89
146 147 7.042051 GCTTTGCCTCGTATTGATATTCAGTAA 60.042 37.037 0.00 0.00 0.00 2.24
147 148 6.423905 GCTTTGCCTCGTATTGATATTCAGTA 59.576 38.462 0.00 0.00 0.00 2.74
148 149 5.237344 GCTTTGCCTCGTATTGATATTCAGT 59.763 40.000 0.00 0.00 0.00 3.41
149 150 5.334414 GGCTTTGCCTCGTATTGATATTCAG 60.334 44.000 0.73 0.00 46.69 3.02
150 151 4.515191 GGCTTTGCCTCGTATTGATATTCA 59.485 41.667 0.73 0.00 46.69 2.57
151 152 5.035784 GGCTTTGCCTCGTATTGATATTC 57.964 43.478 0.73 0.00 46.69 1.75
167 168 2.256174 CATGTTGATTCGCAGGCTTTG 58.744 47.619 0.00 0.00 0.00 2.77
168 169 1.888512 ACATGTTGATTCGCAGGCTTT 59.111 42.857 0.00 0.00 0.00 3.51
169 170 1.200716 CACATGTTGATTCGCAGGCTT 59.799 47.619 0.00 0.00 0.00 4.35
170 171 0.806868 CACATGTTGATTCGCAGGCT 59.193 50.000 0.00 0.00 0.00 4.58
171 172 0.179156 CCACATGTTGATTCGCAGGC 60.179 55.000 0.00 0.00 0.00 4.85
172 173 1.167851 ACCACATGTTGATTCGCAGG 58.832 50.000 3.55 0.00 0.00 4.85
173 174 2.995466 AACCACATGTTGATTCGCAG 57.005 45.000 3.55 0.00 35.31 5.18
182 183 4.202567 ACCTAACCATCTCAACCACATGTT 60.203 41.667 0.00 0.00 37.80 2.71
183 184 3.330701 ACCTAACCATCTCAACCACATGT 59.669 43.478 0.00 0.00 0.00 3.21
184 185 3.691118 CACCTAACCATCTCAACCACATG 59.309 47.826 0.00 0.00 0.00 3.21
185 186 3.308402 CCACCTAACCATCTCAACCACAT 60.308 47.826 0.00 0.00 0.00 3.21
186 187 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
187 188 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
188 189 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
189 190 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
190 191 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
191 192 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
192 193 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
193 194 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
194 195 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
195 196 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
196 197 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
197 198 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
198 199 3.370209 GGAATACCACTGTCCACCTAACC 60.370 52.174 0.00 0.00 35.97 2.85
199 200 3.370209 GGGAATACCACTGTCCACCTAAC 60.370 52.174 0.00 0.00 39.85 2.34
200 201 2.841881 GGGAATACCACTGTCCACCTAA 59.158 50.000 0.00 0.00 39.85 2.69
201 202 2.225675 TGGGAATACCACTGTCCACCTA 60.226 50.000 0.00 0.00 46.80 3.08
202 203 1.286248 GGGAATACCACTGTCCACCT 58.714 55.000 0.00 0.00 39.85 4.00
203 204 0.988832 TGGGAATACCACTGTCCACC 59.011 55.000 0.00 0.00 46.80 4.61
213 214 0.033503 CCTGGTGGGTTGGGAATACC 60.034 60.000 0.00 0.00 40.81 2.73
214 215 3.588742 CCTGGTGGGTTGGGAATAC 57.411 57.895 0.00 0.00 0.00 1.89
225 226 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
230 231 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
231 232 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
232 233 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
233 234 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
234 235 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
235 236 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
236 237 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
237 238 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
238 239 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
239 240 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
240 241 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
241 242 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
242 243 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
243 244 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
244 245 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
245 246 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
246 247 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
247 248 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
248 249 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
249 250 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
259 260 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
260 261 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
261 262 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
262 263 4.340950 TGCCGGAAATCCTGAAATAAATCC 59.659 41.667 5.05 0.00 0.00 3.01
263 264 5.514274 TGCCGGAAATCCTGAAATAAATC 57.486 39.130 5.05 0.00 0.00 2.17
264 265 5.930837 TTGCCGGAAATCCTGAAATAAAT 57.069 34.783 5.05 0.00 0.00 1.40
265 266 5.659463 CATTGCCGGAAATCCTGAAATAAA 58.341 37.500 4.04 0.00 0.00 1.40
266 267 4.441356 GCATTGCCGGAAATCCTGAAATAA 60.441 41.667 4.04 0.00 0.00 1.40
267 268 3.068024 GCATTGCCGGAAATCCTGAAATA 59.932 43.478 4.04 0.00 0.00 1.40
268 269 2.159057 GCATTGCCGGAAATCCTGAAAT 60.159 45.455 4.04 0.00 0.00 2.17
269 270 1.204467 GCATTGCCGGAAATCCTGAAA 59.796 47.619 4.04 0.00 0.00 2.69
270 271 0.817013 GCATTGCCGGAAATCCTGAA 59.183 50.000 4.04 0.00 0.00 3.02
271 272 1.375853 CGCATTGCCGGAAATCCTGA 61.376 55.000 4.04 0.00 0.00 3.86
272 273 1.064621 CGCATTGCCGGAAATCCTG 59.935 57.895 4.04 0.00 0.00 3.86
273 274 2.774799 GCGCATTGCCGGAAATCCT 61.775 57.895 4.04 0.00 37.76 3.24
274 275 2.278792 GCGCATTGCCGGAAATCC 60.279 61.111 4.04 0.00 37.76 3.01
283 284 0.455633 CTCCACTGAAAGCGCATTGC 60.456 55.000 11.47 0.00 46.98 3.56
284 285 0.169672 CCTCCACTGAAAGCGCATTG 59.830 55.000 11.47 0.00 37.60 2.82
285 286 0.036732 TCCTCCACTGAAAGCGCATT 59.963 50.000 11.47 2.75 37.60 3.56
286 287 0.392193 CTCCTCCACTGAAAGCGCAT 60.392 55.000 11.47 0.00 37.60 4.73
287 288 1.004560 CTCCTCCACTGAAAGCGCA 60.005 57.895 11.47 0.00 37.60 6.09
288 289 1.016653 GTCTCCTCCACTGAAAGCGC 61.017 60.000 0.00 0.00 37.60 5.92
289 290 0.734253 CGTCTCCTCCACTGAAAGCG 60.734 60.000 0.00 0.00 37.60 4.68
290 291 0.318762 ACGTCTCCTCCACTGAAAGC 59.681 55.000 0.00 0.00 37.60 3.51
291 292 2.821991 AACGTCTCCTCCACTGAAAG 57.178 50.000 0.00 0.00 42.29 2.62
292 293 2.224209 GGAAACGTCTCCTCCACTGAAA 60.224 50.000 0.00 0.00 32.21 2.69
293 294 1.343465 GGAAACGTCTCCTCCACTGAA 59.657 52.381 0.00 0.00 32.21 3.02
294 295 0.966920 GGAAACGTCTCCTCCACTGA 59.033 55.000 0.00 0.00 32.21 3.41
295 296 3.516578 GGAAACGTCTCCTCCACTG 57.483 57.895 0.00 0.00 32.21 3.66
314 315 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
315 316 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
316 317 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
317 318 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
318 319 3.437795 CCGTAGGCACCTCGTCGT 61.438 66.667 0.00 0.00 46.14 4.34
330 331 6.866770 TCTTGAGATTTACAAAGTCACCGTAG 59.133 38.462 0.00 0.00 0.00 3.51
331 332 6.751157 TCTTGAGATTTACAAAGTCACCGTA 58.249 36.000 0.00 0.00 0.00 4.02
332 333 5.607477 TCTTGAGATTTACAAAGTCACCGT 58.393 37.500 0.00 0.00 0.00 4.83
333 334 6.368791 TCATCTTGAGATTTACAAAGTCACCG 59.631 38.462 0.00 0.00 31.21 4.94
334 335 7.672983 TCATCTTGAGATTTACAAAGTCACC 57.327 36.000 0.00 0.00 31.21 4.02
335 336 8.725148 ACATCATCTTGAGATTTACAAAGTCAC 58.275 33.333 0.00 0.00 31.21 3.67
336 337 8.724229 CACATCATCTTGAGATTTACAAAGTCA 58.276 33.333 0.00 0.00 31.21 3.41
337 338 7.695618 GCACATCATCTTGAGATTTACAAAGTC 59.304 37.037 0.00 0.00 31.21 3.01
338 339 7.392673 AGCACATCATCTTGAGATTTACAAAGT 59.607 33.333 0.00 0.00 31.21 2.66
339 340 7.696872 CAGCACATCATCTTGAGATTTACAAAG 59.303 37.037 0.00 0.00 31.21 2.77
340 341 7.362315 CCAGCACATCATCTTGAGATTTACAAA 60.362 37.037 0.00 0.00 31.21 2.83
341 342 6.094464 CCAGCACATCATCTTGAGATTTACAA 59.906 38.462 0.00 0.00 31.21 2.41
342 343 5.587443 CCAGCACATCATCTTGAGATTTACA 59.413 40.000 0.00 0.00 31.21 2.41
343 344 5.505324 GCCAGCACATCATCTTGAGATTTAC 60.505 44.000 0.00 0.00 31.21 2.01
344 345 4.577693 GCCAGCACATCATCTTGAGATTTA 59.422 41.667 0.00 0.00 31.21 1.40
345 346 3.380637 GCCAGCACATCATCTTGAGATTT 59.619 43.478 0.00 0.00 31.21 2.17
346 347 2.950309 GCCAGCACATCATCTTGAGATT 59.050 45.455 0.00 0.00 31.21 2.40
347 348 2.172930 AGCCAGCACATCATCTTGAGAT 59.827 45.455 0.00 0.00 34.56 2.75
348 349 1.558294 AGCCAGCACATCATCTTGAGA 59.442 47.619 0.00 0.00 0.00 3.27
349 350 1.941294 GAGCCAGCACATCATCTTGAG 59.059 52.381 0.00 0.00 0.00 3.02
350 351 1.279846 TGAGCCAGCACATCATCTTGA 59.720 47.619 0.00 0.00 0.00 3.02
351 352 1.671328 CTGAGCCAGCACATCATCTTG 59.329 52.381 0.00 0.00 0.00 3.02
352 353 1.281287 ACTGAGCCAGCACATCATCTT 59.719 47.619 2.50 0.00 34.37 2.40
353 354 0.910338 ACTGAGCCAGCACATCATCT 59.090 50.000 2.50 0.00 34.37 2.90
354 355 1.134461 AGACTGAGCCAGCACATCATC 60.134 52.381 2.50 0.00 34.37 2.92
355 356 0.910338 AGACTGAGCCAGCACATCAT 59.090 50.000 2.50 0.00 34.37 2.45
356 357 0.689055 AAGACTGAGCCAGCACATCA 59.311 50.000 2.50 0.00 34.37 3.07
357 358 1.736681 GAAAGACTGAGCCAGCACATC 59.263 52.381 2.50 0.00 34.37 3.06
358 359 1.818642 GAAAGACTGAGCCAGCACAT 58.181 50.000 2.50 0.00 34.37 3.21
359 360 0.601046 CGAAAGACTGAGCCAGCACA 60.601 55.000 2.50 0.00 34.37 4.57
360 361 0.319900 TCGAAAGACTGAGCCAGCAC 60.320 55.000 2.50 0.00 34.37 4.40
361 362 0.392706 TTCGAAAGACTGAGCCAGCA 59.607 50.000 0.00 0.00 41.84 4.41
362 363 1.074752 CTTCGAAAGACTGAGCCAGC 58.925 55.000 0.00 0.00 41.84 4.85
363 364 1.001406 ACCTTCGAAAGACTGAGCCAG 59.999 52.381 0.00 1.16 41.84 4.85
364 365 1.048601 ACCTTCGAAAGACTGAGCCA 58.951 50.000 0.00 0.00 41.84 4.75
365 366 1.433534 CACCTTCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 41.84 4.70
366 367 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
367 368 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
368 369 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
369 370 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
370 371 3.118956 CCTATGAGCACCTTCGAAAGACT 60.119 47.826 0.00 0.00 41.84 3.24
371 372 3.190874 CCTATGAGCACCTTCGAAAGAC 58.809 50.000 0.00 0.00 41.84 3.01
372 373 2.168521 CCCTATGAGCACCTTCGAAAGA 59.831 50.000 0.00 0.00 39.20 2.52
373 374 2.168521 TCCCTATGAGCACCTTCGAAAG 59.831 50.000 0.00 0.00 0.00 2.62
374 375 2.184533 TCCCTATGAGCACCTTCGAAA 58.815 47.619 0.00 0.00 0.00 3.46
375 376 1.860641 TCCCTATGAGCACCTTCGAA 58.139 50.000 0.00 0.00 0.00 3.71
376 377 2.088104 ATCCCTATGAGCACCTTCGA 57.912 50.000 0.00 0.00 0.00 3.71
377 378 3.157881 TCTATCCCTATGAGCACCTTCG 58.842 50.000 0.00 0.00 0.00 3.79
378 379 4.021544 CACTCTATCCCTATGAGCACCTTC 60.022 50.000 0.00 0.00 0.00 3.46
379 380 3.900601 CACTCTATCCCTATGAGCACCTT 59.099 47.826 0.00 0.00 0.00 3.50
380 381 3.116939 ACACTCTATCCCTATGAGCACCT 60.117 47.826 0.00 0.00 0.00 4.00
381 382 3.006323 CACACTCTATCCCTATGAGCACC 59.994 52.174 0.00 0.00 0.00 5.01
382 383 3.553922 GCACACTCTATCCCTATGAGCAC 60.554 52.174 0.00 0.00 0.00 4.40
383 384 2.630098 GCACACTCTATCCCTATGAGCA 59.370 50.000 0.00 0.00 0.00 4.26
384 385 2.352225 CGCACACTCTATCCCTATGAGC 60.352 54.545 0.00 0.00 0.00 4.26
385 386 2.887783 ACGCACACTCTATCCCTATGAG 59.112 50.000 0.00 0.00 0.00 2.90
386 387 2.623416 CACGCACACTCTATCCCTATGA 59.377 50.000 0.00 0.00 0.00 2.15
387 388 2.362397 ACACGCACACTCTATCCCTATG 59.638 50.000 0.00 0.00 0.00 2.23
388 389 2.362397 CACACGCACACTCTATCCCTAT 59.638 50.000 0.00 0.00 0.00 2.57
389 390 1.749063 CACACGCACACTCTATCCCTA 59.251 52.381 0.00 0.00 0.00 3.53
390 391 0.532573 CACACGCACACTCTATCCCT 59.467 55.000 0.00 0.00 0.00 4.20
391 392 0.246635 ACACACGCACACTCTATCCC 59.753 55.000 0.00 0.00 0.00 3.85
392 393 1.350193 CACACACGCACACTCTATCC 58.650 55.000 0.00 0.00 0.00 2.59
393 394 0.716108 GCACACACGCACACTCTATC 59.284 55.000 0.00 0.00 0.00 2.08
394 395 1.008875 CGCACACACGCACACTCTAT 61.009 55.000 0.00 0.00 0.00 1.98
395 396 1.660264 CGCACACACGCACACTCTA 60.660 57.895 0.00 0.00 0.00 2.43
396 397 2.961721 CGCACACACGCACACTCT 60.962 61.111 0.00 0.00 0.00 3.24
397 398 2.680427 GAACGCACACACGCACACTC 62.680 60.000 0.00 0.00 36.19 3.51
398 399 2.808958 GAACGCACACACGCACACT 61.809 57.895 0.00 0.00 36.19 3.55
399 400 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
400 401 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
401 402 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
402 403 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
403 404 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
404 405 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
405 406 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
406 407 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
407 408 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
408 409 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
409 410 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
410 411 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
411 412 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
412 413 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
413 414 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
414 415 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
415 416 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
416 417 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
417 418 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
418 419 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
419 420 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
420 421 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
421 422 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
422 423 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
423 424 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
424 425 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
425 426 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
426 427 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
427 428 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
428 429 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
429 430 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
430 431 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
431 432 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
432 433 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
436 437 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
437 438 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
438 439 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
439 440 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
440 441 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
441 442 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
442 443 2.416836 GGTACAGACACAAGCGCTCATA 60.417 50.000 12.06 0.00 0.00 2.15
443 444 1.673033 GGTACAGACACAAGCGCTCAT 60.673 52.381 12.06 0.00 0.00 2.90
444 445 0.319555 GGTACAGACACAAGCGCTCA 60.320 55.000 12.06 0.00 0.00 4.26
445 446 1.344942 CGGTACAGACACAAGCGCTC 61.345 60.000 12.06 0.00 0.00 5.03
446 447 1.372997 CGGTACAGACACAAGCGCT 60.373 57.895 2.64 2.64 0.00 5.92
447 448 0.736325 ATCGGTACAGACACAAGCGC 60.736 55.000 0.00 0.00 34.35 5.92
448 449 0.992072 CATCGGTACAGACACAAGCG 59.008 55.000 0.00 0.00 35.57 4.68
449 450 0.721718 GCATCGGTACAGACACAAGC 59.278 55.000 0.00 0.00 0.00 4.01
450 451 2.370281 AGCATCGGTACAGACACAAG 57.630 50.000 0.00 0.00 0.00 3.16
451 452 3.945981 TTAGCATCGGTACAGACACAA 57.054 42.857 0.00 0.00 0.00 3.33
452 453 3.945981 TTTAGCATCGGTACAGACACA 57.054 42.857 0.00 0.00 0.00 3.72
473 474 5.763204 TCTGAAGACTTTGCCTCGTATTTTT 59.237 36.000 0.00 0.00 0.00 1.94
474 475 5.305585 TCTGAAGACTTTGCCTCGTATTTT 58.694 37.500 0.00 0.00 0.00 1.82
475 476 4.894784 TCTGAAGACTTTGCCTCGTATTT 58.105 39.130 0.00 0.00 0.00 1.40
479 480 2.910688 TTCTGAAGACTTTGCCTCGT 57.089 45.000 0.00 0.00 0.00 4.18
525 530 5.467035 TTGTGAGGATTGTTGATTTTCCC 57.533 39.130 0.00 0.00 0.00 3.97
526 531 7.970614 GTCTATTGTGAGGATTGTTGATTTTCC 59.029 37.037 0.00 0.00 0.00 3.13
527 532 8.514594 TGTCTATTGTGAGGATTGTTGATTTTC 58.485 33.333 0.00 0.00 0.00 2.29
531 538 9.685276 TTATTGTCTATTGTGAGGATTGTTGAT 57.315 29.630 0.00 0.00 0.00 2.57
553 560 7.633193 TGTCAAACAAACTGTACACCTTATT 57.367 32.000 0.00 0.00 0.00 1.40
563 570 4.737352 GCCACATGATGTCAAACAAACTGT 60.737 41.667 0.00 0.00 0.00 3.55
617 624 1.266446 TCGTCGACCGTATCAACAACA 59.734 47.619 10.58 0.00 37.94 3.33
618 625 1.645751 GTCGTCGACCGTATCAACAAC 59.354 52.381 14.60 0.00 37.94 3.32
619 626 1.536766 AGTCGTCGACCGTATCAACAA 59.463 47.619 21.40 0.00 37.94 2.83
620 627 1.129251 GAGTCGTCGACCGTATCAACA 59.871 52.381 21.40 0.00 37.94 3.33
641 648 1.287730 GGTTGCTGCAGTCTGACTCG 61.288 60.000 16.64 5.22 0.00 4.18
647 654 1.228063 CAGTGGGTTGCTGCAGTCT 60.228 57.895 16.64 0.39 0.00 3.24
1005 1026 0.662085 CGTAGTAGCCCGTCTCCTTC 59.338 60.000 0.00 0.00 0.00 3.46
1059 1080 4.945246 TGTAATACGCCTTCTTGATCTCC 58.055 43.478 0.00 0.00 0.00 3.71
1104 1125 2.292103 AAAAACGCAGCAAAGCAAGA 57.708 40.000 0.00 0.00 0.00 3.02
1128 1156 5.010922 AGCAGCAGAAGGAATCAGATACTAG 59.989 44.000 0.00 0.00 0.00 2.57
1183 1226 2.112279 TAGGGTTCTTGTCTGGGTGT 57.888 50.000 0.00 0.00 0.00 4.16
1237 1280 1.959282 AGAGGAGCAAAGGCAAAACAG 59.041 47.619 0.00 0.00 44.61 3.16
1256 1299 0.034477 AAAGGTGGGCGGATTGGTAG 60.034 55.000 0.00 0.00 0.00 3.18
1297 1340 1.893808 CCGAGTTGCTTGGCACAGT 60.894 57.895 0.00 0.00 42.39 3.55
1368 1412 1.079503 TTTTGCGTTTTGGCACCAAC 58.920 45.000 0.45 0.00 43.82 3.77
1402 1446 1.967535 CTCGTCTGGAGGCAGTTGA 59.032 57.895 0.00 0.00 39.22 3.18
1431 1475 5.940470 ACAGAATAGTCAAACAAGGACATCC 59.060 40.000 0.00 0.00 37.74 3.51
1433 1477 6.207417 CCAACAGAATAGTCAAACAAGGACAT 59.793 38.462 0.00 0.00 37.74 3.06
1437 1481 5.762045 CACCAACAGAATAGTCAAACAAGG 58.238 41.667 0.00 0.00 0.00 3.61
1450 1494 1.039068 CACCATTGGCACCAACAGAA 58.961 50.000 3.77 0.00 38.88 3.02
1642 1692 6.591750 TTTGCTCATAGGGTAGTATAGAGC 57.408 41.667 0.00 0.00 45.23 4.09
1652 1702 4.475016 AGGTTCACTATTTGCTCATAGGGT 59.525 41.667 5.26 0.00 32.61 4.34
1725 1775 7.306574 GGTCGGCAATGTTCTTTTAAAAAGAAG 60.307 37.037 0.00 0.63 36.99 2.85
1726 1776 6.477360 GGTCGGCAATGTTCTTTTAAAAAGAA 59.523 34.615 0.00 0.00 34.20 2.52
1727 1777 5.980715 GGTCGGCAATGTTCTTTTAAAAAGA 59.019 36.000 1.66 0.00 0.00 2.52
1728 1778 5.751028 TGGTCGGCAATGTTCTTTTAAAAAG 59.249 36.000 1.66 0.00 0.00 2.27
1729 1779 5.520649 GTGGTCGGCAATGTTCTTTTAAAAA 59.479 36.000 1.66 0.00 0.00 1.94
1734 1784 2.034558 CAGTGGTCGGCAATGTTCTTTT 59.965 45.455 0.00 0.00 0.00 2.27
1814 1864 7.846107 CACACGTATATTTGTGAAATCTGCTAC 59.154 37.037 12.42 0.00 45.03 3.58
2047 2104 5.904362 ACTGATGAAAGCCATAAAGGTTC 57.096 39.130 0.00 0.00 40.61 3.62
2048 2105 6.948309 ACTAACTGATGAAAGCCATAAAGGTT 59.052 34.615 0.00 0.00 40.61 3.50
2049 2106 6.485171 ACTAACTGATGAAAGCCATAAAGGT 58.515 36.000 0.00 0.00 40.61 3.50
2050 2107 7.396540 AACTAACTGATGAAAGCCATAAAGG 57.603 36.000 0.00 0.00 41.84 3.11
2296 2361 7.910683 GCAATACTAGTAAAAGCATCAAACCTC 59.089 37.037 6.70 0.00 0.00 3.85
2352 2417 8.188799 GGTTAATCTGCCTATTTAGGTTCAAAC 58.811 37.037 5.56 3.83 45.42 2.93
2516 2584 8.186178 TGTACTTACAGCTAAGTAGTACGTAC 57.814 38.462 18.10 18.10 43.28 3.67
2592 2743 2.544694 CGAACTACAGCAGCTATGGAGG 60.545 54.545 13.49 1.99 32.48 4.30
2666 2939 8.804743 GCACACATCATAAAATTCTTTCTCATG 58.195 33.333 0.00 0.00 0.00 3.07
2679 2952 9.995003 AAAGAAAAATTAGGCACACATCATAAA 57.005 25.926 0.00 0.00 0.00 1.40
2791 3064 2.545113 CCCATGTGCATCATAAGCTTGC 60.545 50.000 9.86 4.57 34.67 4.01
2958 3231 6.721208 TGGATTGAAGAAAATTAGTTGCCTCT 59.279 34.615 0.00 0.00 0.00 3.69
3055 3328 7.255104 CCTGTAGAATGTTGACAAGCAAGTTAA 60.255 37.037 0.00 0.00 37.12 2.01
3282 3555 4.253685 CAAACTAATGGTCATGGAGTCGT 58.746 43.478 0.00 0.00 0.00 4.34
3385 3658 3.446873 TCTTTCTTTTTGAACAGCCTGCA 59.553 39.130 0.00 0.00 33.88 4.41
3675 3948 9.553064 GACAATTCTAAGAATGTCATCACCTAT 57.447 33.333 10.87 0.00 41.35 2.57
3678 3951 7.201679 CCAGACAATTCTAAGAATGTCATCACC 60.202 40.741 15.56 0.00 43.53 4.02
3698 3971 4.523083 ACAGTAACTGCTTTTTCCAGACA 58.477 39.130 0.00 0.00 34.37 3.41
3788 4068 9.435570 AGTTAGCAGATAAGAGGGACTATAAAA 57.564 33.333 0.00 0.00 41.55 1.52
3886 4243 2.657143 GGAGTACTCCTACAGACCAGG 58.343 57.143 31.12 0.00 46.16 4.45
3969 4326 7.691158 ACAGTTAAGAAAAGGTTCAGTAAACG 58.309 34.615 0.00 0.00 38.87 3.60
4056 4413 7.072263 ACTTCAGATTACAGATATCAAGGGG 57.928 40.000 5.32 0.00 0.00 4.79
4104 4461 0.659427 CATATGCTGCAGGACAACGG 59.341 55.000 17.12 0.00 0.00 4.44
4125 4482 5.106157 GCCAATAGTGTTCAGCATAACAAGT 60.106 40.000 5.56 0.48 40.85 3.16
4338 4695 3.411446 CCCAAAGAAGCACTGTATCACA 58.589 45.455 0.00 0.00 0.00 3.58
4360 4717 4.692155 TGATACAAGCATGAACACTCACAG 59.308 41.667 0.00 0.00 33.30 3.66
4377 4734 6.315144 CCGAGTTTTATCACCAACATGATACA 59.685 38.462 0.00 0.00 39.97 2.29
4892 5269 4.649705 TGCGACCCTTCCCCCTCA 62.650 66.667 0.00 0.00 0.00 3.86
5115 5493 2.224548 ACAACTCTGGCCCAAGTCTAAC 60.225 50.000 0.00 0.00 0.00 2.34
5118 5496 0.846693 AACAACTCTGGCCCAAGTCT 59.153 50.000 0.00 0.00 0.00 3.24
5169 5547 4.750598 GGTCAGGTAAGAGTTTGAACTGTC 59.249 45.833 0.30 0.00 39.88 3.51
5171 5549 4.962155 AGGTCAGGTAAGAGTTTGAACTG 58.038 43.478 0.30 0.00 39.88 3.16
5176 5554 6.017026 GGAAAAAGAGGTCAGGTAAGAGTTTG 60.017 42.308 0.00 0.00 0.00 2.93
5238 5616 4.807834 CACATATGGACTCTAGCACAACAG 59.192 45.833 7.80 0.00 0.00 3.16
5550 5932 0.538977 ATTGTGACCTGCTGCTGCTT 60.539 50.000 17.00 0.93 40.48 3.91
5551 5933 0.538977 AATTGTGACCTGCTGCTGCT 60.539 50.000 17.00 0.00 40.48 4.24
5552 5934 0.388134 CAATTGTGACCTGCTGCTGC 60.388 55.000 8.89 8.89 40.20 5.25
5669 6051 0.602638 AACTCCAACGCGCTTCATCA 60.603 50.000 5.73 0.00 0.00 3.07
5684 6066 4.034975 GCATTCTAAGCAGGACATCAACTC 59.965 45.833 0.00 0.00 0.00 3.01
5729 6139 6.252233 TGGTATTCATCAAATCAAACAGGGA 58.748 36.000 0.00 0.00 0.00 4.20
5763 6173 6.408869 CCCATGCAATCCTGTAAAATTTTCT 58.591 36.000 6.72 0.00 0.00 2.52
5814 6232 8.257306 GGGGCACTTATCATTTCAGAATTTTTA 58.743 33.333 0.00 0.00 0.00 1.52
5820 6238 4.314522 TGGGGCACTTATCATTTCAGAA 57.685 40.909 0.00 0.00 0.00 3.02
5822 6240 3.956199 ACATGGGGCACTTATCATTTCAG 59.044 43.478 0.00 0.00 0.00 3.02
5823 6241 3.700539 CACATGGGGCACTTATCATTTCA 59.299 43.478 0.00 0.00 0.00 2.69
5842 6260 2.270959 TGTTGCTTTGTGCCACACA 58.729 47.368 0.00 0.00 41.54 3.72
5864 6282 2.099141 TGAGAATGGAGGCGTTTGAG 57.901 50.000 0.00 0.00 0.00 3.02
5865 6283 2.632377 GATGAGAATGGAGGCGTTTGA 58.368 47.619 0.00 0.00 0.00 2.69
5875 6293 3.735820 CGTGGCAAAATGGATGAGAATGG 60.736 47.826 0.00 0.00 0.00 3.16
5880 6298 1.811965 TGACGTGGCAAAATGGATGAG 59.188 47.619 0.00 0.00 0.00 2.90
5903 6321 8.998377 TCAAAAAGATTTCGTTGATGTCATCTA 58.002 29.630 13.90 3.60 0.00 1.98
5905 6323 8.679288 ATCAAAAAGATTTCGTTGATGTCATC 57.321 30.769 5.83 5.83 38.84 2.92
6005 6423 3.252974 AGTTTTGAAGATCTCGCCGAT 57.747 42.857 0.00 0.00 34.25 4.18
6009 6427 5.807520 TGTGATCTAGTTTTGAAGATCTCGC 59.192 40.000 12.19 0.00 38.30 5.03
6047 6465 3.101437 TGGCCCTCAGAATAAGTCGTTA 58.899 45.455 0.00 0.00 0.00 3.18
6048 6466 1.906574 TGGCCCTCAGAATAAGTCGTT 59.093 47.619 0.00 0.00 0.00 3.85
6050 6468 2.691409 TTGGCCCTCAGAATAAGTCG 57.309 50.000 0.00 0.00 0.00 4.18
6056 6474 1.620323 GCAACTTTTGGCCCTCAGAAT 59.380 47.619 0.00 0.00 0.00 2.40
6125 6551 7.531857 TTGCCATGGTCAATTAGAAAAGTAA 57.468 32.000 14.67 0.00 0.00 2.24
6155 6595 9.968870 TGAAGTAAATTTGTTGTGGTAATTACC 57.031 29.630 25.22 25.22 46.62 2.85
6167 6608 7.043565 GCCATGATCCATGAAGTAAATTTGTT 58.956 34.615 8.38 0.00 43.81 2.83
6241 6682 6.909550 ATTGCCATGACCTGTAAACTAAAA 57.090 33.333 0.00 0.00 0.00 1.52
6246 6687 5.757808 ACAAAAATTGCCATGACCTGTAAAC 59.242 36.000 0.00 0.00 0.00 2.01
6251 6692 7.172875 TGAAAATACAAAAATTGCCATGACCTG 59.827 33.333 0.00 0.00 0.00 4.00
6254 6695 7.041508 TGGTGAAAATACAAAAATTGCCATGAC 60.042 33.333 0.00 0.00 0.00 3.06
6260 6701 7.200778 ACCATGGTGAAAATACAAAAATTGC 57.799 32.000 18.99 0.00 0.00 3.56
6311 6754 5.524511 TTGTCACGATACATGCACTAAAC 57.475 39.130 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.