Multiple sequence alignment - TraesCS7A01G250200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G250200 chr7A 100.000 5175 0 0 1 5175 232598664 232593490 0.000000e+00 9557.0
1 TraesCS7A01G250200 chr7D 94.198 4619 166 52 607 5175 220290598 220286032 0.000000e+00 6951.0
2 TraesCS7A01G250200 chr7D 94.318 88 3 2 520 605 220291781 220291694 3.250000e-27 134.0
3 TraesCS7A01G250200 chr7B 91.999 3862 178 62 706 4524 179246588 179250361 0.000000e+00 5299.0
4 TraesCS7A01G250200 chr7B 95.775 568 19 3 4613 5175 179250372 179250939 0.000000e+00 911.0
5 TraesCS7A01G250200 chr7B 82.773 714 70 28 11 683 179244846 179245547 5.770000e-164 588.0
6 TraesCS7A01G250200 chr7B 93.158 190 13 0 3792 3981 443646512 443646323 3.950000e-71 279.0
7 TraesCS7A01G250200 chr4B 90.968 310 28 0 3786 4095 605162688 605162997 8.010000e-113 418.0
8 TraesCS7A01G250200 chr2B 89.137 313 34 0 3786 4098 447815475 447815163 1.750000e-104 390.0
9 TraesCS7A01G250200 chr6A 88.498 313 36 0 3786 4098 449815563 449815875 3.780000e-101 379.0
10 TraesCS7A01G250200 chr6A 86.262 313 36 3 3786 4098 22031165 22030860 2.990000e-87 333.0
11 TraesCS7A01G250200 chr6A 79.135 393 43 24 2130 2488 61396393 61396006 8.660000e-58 235.0
12 TraesCS7A01G250200 chr6D 82.213 461 47 21 2059 2488 226683360 226682904 1.060000e-96 364.0
13 TraesCS7A01G250200 chr4A 91.518 224 18 1 3785 4008 564740352 564740574 1.810000e-79 307.0
14 TraesCS7A01G250200 chr2A 92.500 40 3 0 634 673 546339635 546339596 2.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G250200 chr7A 232593490 232598664 5174 True 9557.0 9557 100.000000 1 5175 1 chr7A.!!$R1 5174
1 TraesCS7A01G250200 chr7D 220286032 220291781 5749 True 3542.5 6951 94.258000 520 5175 2 chr7D.!!$R1 4655
2 TraesCS7A01G250200 chr7B 179244846 179250939 6093 False 2266.0 5299 90.182333 11 5175 3 chr7B.!!$F1 5164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 2905 0.042448 GACGACACACTTTGCGGTTC 60.042 55.0 0.0 0.0 0.0 3.62 F
1586 3759 0.036294 GTCCAGTACCTTGACCAGCC 60.036 60.0 0.0 0.0 0.0 4.85 F
2930 5190 0.107831 TTTAGCAGCACGTTCAGGGT 59.892 50.0 0.0 0.0 0.0 4.34 F
3043 5303 1.123861 AGCTGCTGGAGTTGGTGAGA 61.124 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 4584 0.169672 CTTGTTGGAAGCGATGGCAG 59.830 55.000 1.5 0.0 43.41 4.85 R
3109 5369 2.356535 GCCATGAAATCTGGAGACCACT 60.357 50.000 0.0 0.0 35.70 4.00 R
3967 6227 0.108138 CCACTTCCTCACCGTCATCC 60.108 60.000 0.0 0.0 0.00 3.51 R
4867 7134 1.001746 CTCTGAAGCTGGAAGTGCTCA 59.998 52.381 0.0 0.0 40.22 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.682710 TGTTTTAGCTTTACACAAACTTCTCAT 58.317 29.630 0.00 0.00 0.00 2.90
98 101 0.650512 ATCGAATTACGCGGCAACAG 59.349 50.000 12.47 0.00 42.26 3.16
119 122 6.529220 ACAGGCTGGATATTTCTATGAACTC 58.471 40.000 20.34 0.00 0.00 3.01
120 123 6.100279 ACAGGCTGGATATTTCTATGAACTCA 59.900 38.462 20.34 0.00 0.00 3.41
131 134 8.604640 ATTTCTATGAACTCATATGCACTCTG 57.395 34.615 0.00 0.00 38.09 3.35
133 136 7.117285 TCTATGAACTCATATGCACTCTGTT 57.883 36.000 0.00 0.00 38.09 3.16
134 137 6.982724 TCTATGAACTCATATGCACTCTGTTG 59.017 38.462 0.00 0.00 38.09 3.33
135 138 4.256110 TGAACTCATATGCACTCTGTTGG 58.744 43.478 0.00 0.00 0.00 3.77
136 139 4.020307 TGAACTCATATGCACTCTGTTGGA 60.020 41.667 0.00 0.00 0.00 3.53
138 141 2.871022 CTCATATGCACTCTGTTGGAGC 59.129 50.000 0.00 0.00 45.48 4.70
210 215 9.739276 ATATTACATGTGAAGTCTTGGAAAAGA 57.261 29.630 9.11 0.00 0.00 2.52
226 231 5.048507 GGAAAAGACTCACGAACTACTTGT 58.951 41.667 0.00 0.00 0.00 3.16
263 268 9.823647 CATCTACAACATAAATACACTCTTCCT 57.176 33.333 0.00 0.00 0.00 3.36
282 287 8.617290 TCTTCCTAAAGAAAGGATAAACACAC 57.383 34.615 0.00 0.00 45.14 3.82
292 297 9.403583 AGAAAGGATAAACACACTTTTTACTCA 57.596 29.630 0.00 0.00 33.66 3.41
302 307 6.016276 ACACACTTTTTACTCATGATTGGTCC 60.016 38.462 0.00 0.00 0.00 4.46
303 308 6.207417 CACACTTTTTACTCATGATTGGTCCT 59.793 38.462 0.00 0.00 0.00 3.85
337 342 4.371624 TCCTGTGAATGAGGTCATGTTT 57.628 40.909 0.00 0.00 36.56 2.83
352 358 5.163854 GGTCATGTTTAGTCTGATTTGTCGG 60.164 44.000 0.00 0.00 0.00 4.79
355 361 4.699637 TGTTTAGTCTGATTTGTCGGTGT 58.300 39.130 0.00 0.00 0.00 4.16
358 364 2.960819 AGTCTGATTTGTCGGTGTAGC 58.039 47.619 0.00 0.00 0.00 3.58
363 369 2.288579 TGATTTGTCGGTGTAGCTCGTT 60.289 45.455 0.00 0.00 0.00 3.85
364 370 1.493772 TTTGTCGGTGTAGCTCGTTG 58.506 50.000 0.00 0.00 0.00 4.10
368 374 2.436115 GGTGTAGCTCGTTGCCCC 60.436 66.667 0.00 0.00 44.23 5.80
369 375 2.345991 GTGTAGCTCGTTGCCCCA 59.654 61.111 0.00 0.00 44.23 4.96
370 376 1.078426 GTGTAGCTCGTTGCCCCAT 60.078 57.895 0.00 0.00 44.23 4.00
371 377 1.078497 TGTAGCTCGTTGCCCCATG 60.078 57.895 0.00 0.00 44.23 3.66
372 378 1.078426 GTAGCTCGTTGCCCCATGT 60.078 57.895 0.00 0.00 44.23 3.21
373 379 1.090052 GTAGCTCGTTGCCCCATGTC 61.090 60.000 0.00 0.00 44.23 3.06
374 380 2.572095 TAGCTCGTTGCCCCATGTCG 62.572 60.000 0.00 0.00 44.23 4.35
375 381 2.047274 CTCGTTGCCCCATGTCGT 60.047 61.111 0.00 0.00 0.00 4.34
376 382 1.216977 CTCGTTGCCCCATGTCGTA 59.783 57.895 0.00 0.00 0.00 3.43
379 385 0.672401 CGTTGCCCCATGTCGTAAGT 60.672 55.000 0.00 0.00 39.48 2.24
388 394 3.930848 CCCATGTCGTAAGTGTTTACCTC 59.069 47.826 0.00 0.00 36.60 3.85
396 402 5.412594 TCGTAAGTGTTTACCTCTCGTGTAT 59.587 40.000 0.00 0.00 36.60 2.29
397 403 6.072508 TCGTAAGTGTTTACCTCTCGTGTATT 60.073 38.462 0.00 0.00 36.60 1.89
404 410 5.856126 TTACCTCTCGTGTATTGCTTTTG 57.144 39.130 0.00 0.00 0.00 2.44
407 413 3.125316 CCTCTCGTGTATTGCTTTTGGAC 59.875 47.826 0.00 0.00 0.00 4.02
421 427 3.449746 TTTGGACCACTAGGATTTGGG 57.550 47.619 0.00 0.00 37.18 4.12
423 429 1.913419 TGGACCACTAGGATTTGGGTC 59.087 52.381 0.00 0.00 45.68 4.46
425 431 2.987232 GACCACTAGGATTTGGGTCAC 58.013 52.381 0.00 0.00 45.70 3.67
432 458 0.404040 GGATTTGGGTCACAGGGTCA 59.596 55.000 0.00 0.00 0.00 4.02
458 484 2.628178 TGGTTGTTTTGGTGTTGTGTGA 59.372 40.909 0.00 0.00 0.00 3.58
464 490 1.364721 TTGGTGTTGTGTGAGTCGTG 58.635 50.000 0.00 0.00 0.00 4.35
465 491 1.087202 TGGTGTTGTGTGAGTCGTGC 61.087 55.000 0.00 0.00 0.00 5.34
466 492 1.641677 GTGTTGTGTGAGTCGTGCC 59.358 57.895 0.00 0.00 0.00 5.01
467 493 1.087202 GTGTTGTGTGAGTCGTGCCA 61.087 55.000 0.00 0.00 0.00 4.92
468 494 0.179059 TGTTGTGTGAGTCGTGCCAT 60.179 50.000 0.00 0.00 0.00 4.40
469 495 0.512952 GTTGTGTGAGTCGTGCCATC 59.487 55.000 0.00 0.00 0.00 3.51
483 511 0.912528 GCCATCTCGACGACGTAAAC 59.087 55.000 0.00 0.00 40.69 2.01
487 515 2.149358 TCTCGACGACGTAAACATCG 57.851 50.000 0.00 0.00 40.69 3.84
488 516 0.560240 CTCGACGACGTAAACATCGC 59.440 55.000 0.00 0.00 40.69 4.58
491 519 1.506320 CGACGACGTAAACATCGCTAC 59.494 52.381 0.00 0.00 34.56 3.58
492 520 2.508867 GACGACGTAAACATCGCTACA 58.491 47.619 0.00 0.00 0.00 2.74
498 526 5.199424 ACGTAAACATCGCTACATTGTTC 57.801 39.130 0.00 0.00 32.66 3.18
518 546 3.501950 TCGAGTCACATCTTCATTGACG 58.498 45.455 0.00 0.00 43.69 4.35
576 616 3.251479 TCTAATGAATCACACGCTGCT 57.749 42.857 0.00 0.00 0.00 4.24
609 650 4.430007 CGAGGACGGACAGATATTGAAAA 58.570 43.478 0.00 0.00 35.72 2.29
611 652 4.181578 AGGACGGACAGATATTGAAAACG 58.818 43.478 0.00 0.00 0.00 3.60
617 658 4.327898 GGACAGATATTGAAAACGCGTGTA 59.672 41.667 14.98 0.00 0.00 2.90
684 1824 5.058149 TGTGCCATGTGATTGTTTATGAC 57.942 39.130 0.00 0.00 0.00 3.06
686 1826 5.942826 TGTGCCATGTGATTGTTTATGACTA 59.057 36.000 0.00 0.00 0.00 2.59
687 1827 6.093909 TGTGCCATGTGATTGTTTATGACTAG 59.906 38.462 0.00 0.00 0.00 2.57
691 1831 7.698130 GCCATGTGATTGTTTATGACTAGTTTC 59.302 37.037 0.00 0.00 0.00 2.78
711 2869 7.661040 AGTTTCTTGAAGGATGTTGTTTATGG 58.339 34.615 0.00 0.00 0.00 2.74
723 2881 9.573133 GGATGTTGTTTATGGTTTCTTGATAAG 57.427 33.333 0.00 0.00 0.00 1.73
729 2887 8.956426 TGTTTATGGTTTCTTGATAAGGATGAC 58.044 33.333 0.00 0.00 0.00 3.06
746 2905 0.042448 GACGACACACTTTGCGGTTC 60.042 55.000 0.00 0.00 0.00 3.62
1257 3424 1.479709 CTCCACTAGACCAGGACCAG 58.520 60.000 0.00 0.00 0.00 4.00
1266 3433 3.579302 CAGGACCAGCACCCCCAA 61.579 66.667 0.00 0.00 0.00 4.12
1297 3464 3.699134 GATCAGAACCACCGCCCCC 62.699 68.421 0.00 0.00 0.00 5.40
1495 3668 1.734137 GCTGCTGCTACGGCTACTA 59.266 57.895 8.53 0.00 38.96 1.82
1509 3682 4.681942 ACGGCTACTATACTTCGTACTACG 59.318 45.833 1.93 1.93 44.19 3.51
1553 3726 2.473816 TGCTTCTACATATGACGCTGC 58.526 47.619 10.38 8.51 31.26 5.25
1567 3740 2.925170 CTGCTCCCCCTATCCCCG 60.925 72.222 0.00 0.00 0.00 5.73
1584 3757 0.246635 CCGTCCAGTACCTTGACCAG 59.753 60.000 0.00 0.00 0.00 4.00
1586 3759 0.036294 GTCCAGTACCTTGACCAGCC 60.036 60.000 0.00 0.00 0.00 4.85
1700 3873 2.039084 AGGCGAAAGAAGAAGATGGTGT 59.961 45.455 0.00 0.00 0.00 4.16
1712 3885 1.911357 AGATGGTGTCAAGGATGCTGA 59.089 47.619 0.00 0.00 0.00 4.26
1721 3894 0.255318 AAGGATGCTGAAGAGGCTGG 59.745 55.000 0.00 0.00 0.00 4.85
1758 3931 0.967887 TCGAGGAGAGGTTGGCTCTG 60.968 60.000 0.00 0.00 32.98 3.35
1770 3943 3.456280 GTTGGCTCTGCTTAGATCTCAG 58.544 50.000 0.00 0.00 0.00 3.35
1777 3950 6.405065 GGCTCTGCTTAGATCTCAGATATCTG 60.405 46.154 24.32 24.32 45.08 2.90
1779 3952 5.418524 TCTGCTTAGATCTCAGATATCTGGC 59.581 44.000 28.30 21.20 43.91 4.85
1803 3976 2.354503 GCTTGATTCAGTCCAGCAGAGA 60.355 50.000 3.70 0.00 43.30 3.10
1878 4051 4.047059 GAGGACGTCGGTTCCGCA 62.047 66.667 9.92 0.00 0.00 5.69
2145 4318 2.977405 ATCAGCTGTGCGTTCTTTTC 57.023 45.000 14.67 0.00 0.00 2.29
2153 4326 1.531578 GTGCGTTCTTTTCCTCACCTC 59.468 52.381 0.00 0.00 0.00 3.85
2172 4345 4.328983 ACCTCGCATAAAACTGTAATGTCG 59.671 41.667 0.00 0.00 0.00 4.35
2176 4349 5.808030 TCGCATAAAACTGTAATGTCGATGA 59.192 36.000 0.00 0.00 30.21 2.92
2177 4350 6.311690 TCGCATAAAACTGTAATGTCGATGAA 59.688 34.615 0.00 0.00 30.21 2.57
2216 4390 8.257306 TGAATTCAGGCATCCTTTTAAATAACC 58.743 33.333 3.38 0.00 0.00 2.85
2217 4391 7.732222 ATTCAGGCATCCTTTTAAATAACCA 57.268 32.000 0.00 0.00 0.00 3.67
2218 4392 7.732222 TTCAGGCATCCTTTTAAATAACCAT 57.268 32.000 0.00 0.00 0.00 3.55
2219 4393 8.830915 TTCAGGCATCCTTTTAAATAACCATA 57.169 30.769 0.00 0.00 0.00 2.74
2252 4426 7.828508 ATAGATAGGCTTTCATTGCATCAAA 57.171 32.000 7.70 0.00 0.00 2.69
2290 4464 7.138692 GAGAGCTACTCAAACATGTTTTCAT 57.861 36.000 21.10 11.37 44.36 2.57
2291 4465 6.906659 AGAGCTACTCAAACATGTTTTCATG 58.093 36.000 21.10 11.10 46.07 3.07
2305 4479 7.701539 ATGTTTTCATGTTAACTATCTGCCA 57.298 32.000 7.22 0.00 39.30 4.92
2315 4489 8.378172 TGTTAACTATCTGCCAATGCTTATAC 57.622 34.615 7.22 0.00 38.71 1.47
2372 4570 7.687445 TGATGATATCGTAATACATGCATTGC 58.313 34.615 0.00 0.46 0.00 3.56
2373 4571 7.333921 TGATGATATCGTAATACATGCATTGCA 59.666 33.333 14.72 14.72 44.86 4.08
2385 4583 2.689646 TGCATTGCATTGTGTTGATGG 58.310 42.857 7.38 0.00 31.71 3.51
2386 4584 1.395608 GCATTGCATTGTGTTGATGGC 59.604 47.619 10.11 0.00 0.00 4.40
2402 4605 2.486966 GCTGCCATCGCTTCCAAC 59.513 61.111 0.00 0.00 35.36 3.77
2403 4606 2.334946 GCTGCCATCGCTTCCAACA 61.335 57.895 0.00 0.00 35.36 3.33
2404 4607 1.865788 GCTGCCATCGCTTCCAACAA 61.866 55.000 0.00 0.00 35.36 2.83
2405 4608 0.169672 CTGCCATCGCTTCCAACAAG 59.830 55.000 0.00 0.00 35.36 3.16
2422 4625 6.838090 TCCAACAAGATCCATTGGCATAATAA 59.162 34.615 13.10 0.00 42.28 1.40
2469 4675 2.639065 ACTGAAAGGTTCGAACAGCAA 58.361 42.857 28.24 9.70 39.30 3.91
2476 4682 3.851098 AGGTTCGAACAGCAAGATAGTC 58.149 45.455 28.24 7.55 0.00 2.59
2505 4711 9.189723 GAAAGAGAAGGATGATTTGAAGTTTTG 57.810 33.333 0.00 0.00 0.00 2.44
2511 4717 7.693969 AGGATGATTTGAAGTTTTGGACTAG 57.306 36.000 0.00 0.00 37.72 2.57
2512 4718 7.234355 AGGATGATTTGAAGTTTTGGACTAGT 58.766 34.615 0.00 0.00 37.72 2.57
2531 4737 7.687941 ACTAGTCCAAACGAATCAATTTGAT 57.312 32.000 6.06 6.06 39.09 2.57
2576 4782 2.173782 ACACCAGTGTCCATGTTTACCA 59.826 45.455 0.00 0.00 40.24 3.25
2584 4790 1.281867 TCCATGTTTACCAGAGCCAGG 59.718 52.381 0.00 0.00 0.00 4.45
2607 4829 6.650427 GGAATGGTATTCCCCTTATGAAAC 57.350 41.667 9.00 0.00 32.48 2.78
2622 4844 7.012421 CCCTTATGAAACTTACTGGCAACTATC 59.988 40.741 0.00 0.00 37.61 2.08
2624 4846 9.167311 CTTATGAAACTTACTGGCAACTATCTT 57.833 33.333 0.00 0.00 37.61 2.40
2634 4894 9.824216 TTACTGGCAACTATCTTATATCTACCT 57.176 33.333 0.00 0.00 37.61 3.08
2635 4895 8.128322 ACTGGCAACTATCTTATATCTACCTG 57.872 38.462 0.00 0.00 37.61 4.00
2636 4896 7.950684 ACTGGCAACTATCTTATATCTACCTGA 59.049 37.037 0.00 0.00 37.61 3.86
2637 4897 8.721133 TGGCAACTATCTTATATCTACCTGAA 57.279 34.615 0.00 0.00 37.61 3.02
2638 4898 9.326489 TGGCAACTATCTTATATCTACCTGAAT 57.674 33.333 0.00 0.00 37.61 2.57
2647 4907 9.862149 TCTTATATCTACCTGAATACAGTGACA 57.138 33.333 0.00 0.00 42.05 3.58
2649 4909 9.642343 TTATATCTACCTGAATACAGTGACAGT 57.358 33.333 0.00 0.00 42.05 3.55
2650 4910 6.859112 ATCTACCTGAATACAGTGACAGTT 57.141 37.500 0.00 0.00 42.05 3.16
2651 4911 7.956328 ATCTACCTGAATACAGTGACAGTTA 57.044 36.000 0.00 0.00 42.05 2.24
2652 4912 7.770366 TCTACCTGAATACAGTGACAGTTAA 57.230 36.000 0.00 0.00 42.05 2.01
2653 4913 8.185506 TCTACCTGAATACAGTGACAGTTAAA 57.814 34.615 0.00 0.00 42.05 1.52
2654 4914 8.812972 TCTACCTGAATACAGTGACAGTTAAAT 58.187 33.333 0.00 0.00 42.05 1.40
2657 4917 8.812972 ACCTGAATACAGTGACAGTTAAATAGA 58.187 33.333 0.00 0.00 42.05 1.98
2658 4918 9.823647 CCTGAATACAGTGACAGTTAAATAGAT 57.176 33.333 0.00 0.00 42.05 1.98
2710 4970 7.158099 GGCAACAACTAATTATGAACCTCTT 57.842 36.000 0.00 0.00 0.00 2.85
2754 5014 8.439286 CAGTTTCTGTTCTTCTAGCTCATTAAC 58.561 37.037 0.00 0.00 0.00 2.01
2761 5021 9.453572 TGTTCTTCTAGCTCATTAACATTCAAT 57.546 29.630 0.00 0.00 0.00 2.57
2785 5045 3.582647 TCTGTCTTTCTTAGGATGCCACA 59.417 43.478 0.00 0.00 0.00 4.17
2827 5087 3.737774 GCAAACAAGCAGAAGAAATGTCC 59.262 43.478 0.00 0.00 0.00 4.02
2930 5190 0.107831 TTTAGCAGCACGTTCAGGGT 59.892 50.000 0.00 0.00 0.00 4.34
2957 5217 7.624549 AGAAGGTTCAGTAGAGCATTTGATTA 58.375 34.615 0.00 0.00 29.07 1.75
2983 5243 6.568869 AGACGATAAGAGAGAAAAGGACATG 58.431 40.000 0.00 0.00 0.00 3.21
2995 5255 7.821846 AGAGAAAAGGACATGCTAAGTAAGAAG 59.178 37.037 0.00 0.00 0.00 2.85
3001 5261 5.071115 GGACATGCTAAGTAAGAAGGGAGAT 59.929 44.000 0.00 0.00 0.00 2.75
3028 5288 2.676839 CACAGTGGAATTAGCTGAGCTG 59.323 50.000 18.79 0.00 40.10 4.24
3043 5303 1.123861 AGCTGCTGGAGTTGGTGAGA 61.124 55.000 0.00 0.00 0.00 3.27
3109 5369 3.149196 GGTTCAAGAAAGGATCAGTGCA 58.851 45.455 0.00 0.00 0.00 4.57
3199 5459 8.966868 TCCCAAACTAAAATTGATCAAGATACC 58.033 33.333 14.54 0.00 0.00 2.73
3210 5470 1.899814 TCAAGATACCGAGGCACTTGT 59.100 47.619 16.58 0.00 41.55 3.16
3298 5558 5.809051 GGAAATCATCAATGCTTGTTCTTCC 59.191 40.000 0.00 0.00 0.00 3.46
3348 5608 4.525487 TGAAATCAGAAGGAAGCTTGCATT 59.475 37.500 20.82 11.09 0.00 3.56
3736 5996 1.135960 AGGAAGCAGGGAGAATAGCC 58.864 55.000 0.00 0.00 0.00 3.93
3931 6191 2.419739 GCTCCGTCTGGACTCCTCC 61.420 68.421 0.00 0.00 40.17 4.30
3967 6227 0.657312 TGACTGCTGCAACTGAAACG 59.343 50.000 3.02 0.00 0.00 3.60
4066 6326 4.549668 TGTATAACCTCCAACCGGATAGT 58.450 43.478 9.46 0.00 41.79 2.12
4314 6574 3.118261 GCATCTGGGATCTACTCCAAACA 60.118 47.826 0.00 0.00 46.98 2.83
4315 6575 4.701765 CATCTGGGATCTACTCCAAACAG 58.298 47.826 0.00 0.00 46.98 3.16
4316 6576 3.107601 TCTGGGATCTACTCCAAACAGG 58.892 50.000 0.00 0.00 46.98 4.00
4376 6640 7.120432 GCATACTCTGAACTCTGAGGAATTTTT 59.880 37.037 9.85 0.00 43.52 1.94
4432 6696 6.533367 TGTAATTCTTTTGTTGTGCTGGTTTC 59.467 34.615 0.00 0.00 0.00 2.78
4440 6704 3.698539 TGTTGTGCTGGTTTCTGATTGAA 59.301 39.130 0.00 0.00 0.00 2.69
4554 6818 4.829064 TGGATGAGCAAACTGTTACAAC 57.171 40.909 0.00 0.00 0.00 3.32
4555 6819 4.460263 TGGATGAGCAAACTGTTACAACT 58.540 39.130 0.00 0.00 0.00 3.16
4556 6820 4.887071 TGGATGAGCAAACTGTTACAACTT 59.113 37.500 0.00 0.00 0.00 2.66
4557 6821 6.058833 TGGATGAGCAAACTGTTACAACTTA 58.941 36.000 0.00 0.00 0.00 2.24
4558 6822 6.017440 TGGATGAGCAAACTGTTACAACTTAC 60.017 38.462 0.00 0.00 0.00 2.34
4559 6823 6.017440 GGATGAGCAAACTGTTACAACTTACA 60.017 38.462 0.00 0.00 0.00 2.41
4560 6824 6.745159 TGAGCAAACTGTTACAACTTACAA 57.255 33.333 0.00 0.00 0.00 2.41
4577 6841 9.345517 CAACTTACAAATAAATCAGTGGATGTG 57.654 33.333 0.00 0.00 32.92 3.21
4638 6902 2.622064 AGACTGGTTTCTGGTGTGTC 57.378 50.000 0.00 0.00 0.00 3.67
4643 6907 4.850680 ACTGGTTTCTGGTGTGTCTTTTA 58.149 39.130 0.00 0.00 0.00 1.52
4760 7027 1.765230 AACCTACTCTCTACCTGCCG 58.235 55.000 0.00 0.00 0.00 5.69
5089 7356 4.153673 TGGAACCCGTTCTTGTTTCTTA 57.846 40.909 7.47 0.00 39.45 2.10
5144 7413 7.915397 AGCAATGTGACGGACATATTTTATTTC 59.085 33.333 3.05 0.00 45.12 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.046294 TGAGAAGTTTGTGTAAAGCTAAAACA 57.954 30.769 0.00 0.00 34.05 2.83
69 72 6.129115 TGCCGCGTAATTCGATAGTATTTTAC 60.129 38.462 4.92 0.00 42.86 2.01
89 92 1.103398 AATATCCAGCCTGTTGCCGC 61.103 55.000 0.00 0.00 42.71 6.53
90 93 1.334869 GAAATATCCAGCCTGTTGCCG 59.665 52.381 0.00 0.00 42.71 5.69
98 101 9.107177 CATATGAGTTCATAGAAATATCCAGCC 57.893 37.037 0.00 0.00 41.58 4.85
119 122 2.612672 CTGCTCCAACAGAGTGCATATG 59.387 50.000 0.00 0.00 45.21 1.78
120 123 2.238144 ACTGCTCCAACAGAGTGCATAT 59.762 45.455 0.00 0.00 45.21 1.78
131 134 3.402628 TTAGAACTCCACTGCTCCAAC 57.597 47.619 0.00 0.00 0.00 3.77
133 136 4.640771 ATTTTAGAACTCCACTGCTCCA 57.359 40.909 0.00 0.00 0.00 3.86
134 137 5.966742 AAATTTTAGAACTCCACTGCTCC 57.033 39.130 0.00 0.00 0.00 4.70
135 138 9.561270 GAAATAAATTTTAGAACTCCACTGCTC 57.439 33.333 0.00 0.00 0.00 4.26
136 139 9.077885 TGAAATAAATTTTAGAACTCCACTGCT 57.922 29.630 0.00 0.00 0.00 4.24
172 177 9.440773 CTTCACATGTAATATGTGGCATATAGT 57.559 33.333 17.11 9.47 46.78 2.12
202 207 4.931661 AGTAGTTCGTGAGTCTTTTCCA 57.068 40.909 0.00 0.00 0.00 3.53
210 215 5.653507 TGTACAAACAAGTAGTTCGTGAGT 58.346 37.500 0.00 0.00 40.26 3.41
268 273 9.965824 CATGAGTAAAAAGTGTGTTTATCCTTT 57.034 29.630 0.00 0.00 0.00 3.11
276 281 7.346751 ACCAATCATGAGTAAAAAGTGTGTT 57.653 32.000 0.09 0.00 0.00 3.32
312 317 5.139727 ACATGACCTCATTCACAGGAAAAA 58.860 37.500 0.00 0.00 36.43 1.94
313 318 4.728772 ACATGACCTCATTCACAGGAAAA 58.271 39.130 0.00 0.00 36.43 2.29
314 319 4.371624 ACATGACCTCATTCACAGGAAA 57.628 40.909 0.00 0.00 36.43 3.13
315 320 4.371624 AACATGACCTCATTCACAGGAA 57.628 40.909 0.00 0.00 37.45 3.36
316 321 4.371624 AAACATGACCTCATTCACAGGA 57.628 40.909 0.00 0.00 33.61 3.86
317 322 5.248640 ACTAAACATGACCTCATTCACAGG 58.751 41.667 0.00 0.00 33.61 4.00
318 323 6.091849 CAGACTAAACATGACCTCATTCACAG 59.908 42.308 0.00 0.00 33.61 3.66
321 326 6.358974 TCAGACTAAACATGACCTCATTCA 57.641 37.500 0.00 0.00 33.61 2.57
323 328 7.667219 ACAAATCAGACTAAACATGACCTCATT 59.333 33.333 0.00 0.00 33.61 2.57
331 336 5.179368 ACACCGACAAATCAGACTAAACATG 59.821 40.000 0.00 0.00 0.00 3.21
337 342 3.762288 AGCTACACCGACAAATCAGACTA 59.238 43.478 0.00 0.00 0.00 2.59
352 358 1.078426 ATGGGGCAACGAGCTACAC 60.078 57.895 0.00 0.00 44.79 2.90
355 361 1.220749 GACATGGGGCAACGAGCTA 59.779 57.895 0.00 0.00 44.79 3.32
358 364 0.390603 TTACGACATGGGGCAACGAG 60.391 55.000 0.00 0.00 37.60 4.18
363 369 0.398696 AACACTTACGACATGGGGCA 59.601 50.000 0.00 0.00 0.00 5.36
364 370 1.530323 AAACACTTACGACATGGGGC 58.470 50.000 0.00 0.00 0.00 5.80
368 374 4.557690 CGAGAGGTAAACACTTACGACATG 59.442 45.833 0.00 0.00 38.69 3.21
369 375 4.217118 ACGAGAGGTAAACACTTACGACAT 59.783 41.667 0.00 0.00 38.69 3.06
370 376 3.565482 ACGAGAGGTAAACACTTACGACA 59.435 43.478 0.00 0.00 38.69 4.35
371 377 3.910767 CACGAGAGGTAAACACTTACGAC 59.089 47.826 0.00 0.00 38.69 4.34
372 378 3.565482 ACACGAGAGGTAAACACTTACGA 59.435 43.478 0.00 0.00 38.69 3.43
373 379 3.893720 ACACGAGAGGTAAACACTTACG 58.106 45.455 0.00 0.00 38.69 3.18
374 380 6.183360 GCAATACACGAGAGGTAAACACTTAC 60.183 42.308 0.00 0.00 37.30 2.34
375 381 5.865552 GCAATACACGAGAGGTAAACACTTA 59.134 40.000 0.00 0.00 0.00 2.24
376 382 4.689345 GCAATACACGAGAGGTAAACACTT 59.311 41.667 0.00 0.00 0.00 3.16
379 385 4.530710 AGCAATACACGAGAGGTAAACA 57.469 40.909 0.00 0.00 0.00 2.83
388 394 2.811431 TGGTCCAAAAGCAATACACGAG 59.189 45.455 0.00 0.00 30.91 4.18
396 402 3.806949 ATCCTAGTGGTCCAAAAGCAA 57.193 42.857 0.00 0.00 37.07 3.91
397 403 3.806949 AATCCTAGTGGTCCAAAAGCA 57.193 42.857 0.00 0.00 34.23 3.91
404 410 1.913419 TGACCCAAATCCTAGTGGTCC 59.087 52.381 0.00 0.00 43.87 4.46
407 413 2.356125 CCTGTGACCCAAATCCTAGTGG 60.356 54.545 0.00 0.00 34.44 4.00
421 427 0.110486 ACCAACCATGACCCTGTGAC 59.890 55.000 0.00 0.00 0.00 3.67
423 429 0.961019 CAACCAACCATGACCCTGTG 59.039 55.000 0.00 0.00 0.00 3.66
424 430 0.555769 ACAACCAACCATGACCCTGT 59.444 50.000 0.00 0.00 0.00 4.00
425 431 1.703411 AACAACCAACCATGACCCTG 58.297 50.000 0.00 0.00 0.00 4.45
432 458 3.008485 ACAACACCAAAACAACCAACCAT 59.992 39.130 0.00 0.00 0.00 3.55
464 490 0.912528 GTTTACGTCGTCGAGATGGC 59.087 55.000 9.47 0.00 40.15 4.40
465 491 2.251869 TGTTTACGTCGTCGAGATGG 57.748 50.000 9.47 0.00 40.15 3.51
466 492 2.459324 CGATGTTTACGTCGTCGAGATG 59.541 50.000 9.47 0.00 46.84 2.90
467 493 2.701807 CGATGTTTACGTCGTCGAGAT 58.298 47.619 9.47 0.00 46.84 2.75
468 494 2.149358 CGATGTTTACGTCGTCGAGA 57.851 50.000 9.47 0.00 46.84 4.04
483 511 3.000674 GTGACTCGAACAATGTAGCGATG 60.001 47.826 10.76 8.32 31.87 3.84
487 515 4.177026 AGATGTGACTCGAACAATGTAGC 58.823 43.478 0.00 0.00 0.00 3.58
488 516 5.863935 TGAAGATGTGACTCGAACAATGTAG 59.136 40.000 0.00 0.00 0.00 2.74
491 519 5.791367 ATGAAGATGTGACTCGAACAATG 57.209 39.130 0.00 0.00 0.00 2.82
492 520 5.934043 TCAATGAAGATGTGACTCGAACAAT 59.066 36.000 0.00 0.00 0.00 2.71
498 526 3.501950 TCGTCAATGAAGATGTGACTCG 58.498 45.455 0.00 0.00 39.61 4.18
518 546 7.328737 ACACTGAAGATAACACGACTTTACATC 59.671 37.037 0.00 0.00 0.00 3.06
605 646 5.113529 CAGAGACAAAAATACACGCGTTTTC 59.886 40.000 10.22 0.00 0.00 2.29
609 650 3.386486 TCAGAGACAAAAATACACGCGT 58.614 40.909 5.58 5.58 0.00 6.01
611 652 7.623268 AAAAATCAGAGACAAAAATACACGC 57.377 32.000 0.00 0.00 0.00 5.34
637 1774 6.623486 TGTGATAAGCAATCCAAACTTGATG 58.377 36.000 0.00 0.00 33.22 3.07
673 1813 9.793259 TCCTTCAAGAAACTAGTCATAAACAAT 57.207 29.630 0.00 0.00 0.00 2.71
684 1824 9.831737 CATAAACAACATCCTTCAAGAAACTAG 57.168 33.333 0.00 0.00 0.00 2.57
686 1826 7.287696 ACCATAAACAACATCCTTCAAGAAACT 59.712 33.333 0.00 0.00 0.00 2.66
687 1827 7.433680 ACCATAAACAACATCCTTCAAGAAAC 58.566 34.615 0.00 0.00 0.00 2.78
691 1831 7.661040 AGAAACCATAAACAACATCCTTCAAG 58.339 34.615 0.00 0.00 0.00 3.02
693 1833 7.286546 TCAAGAAACCATAAACAACATCCTTCA 59.713 33.333 0.00 0.00 0.00 3.02
696 1836 7.781324 ATCAAGAAACCATAAACAACATCCT 57.219 32.000 0.00 0.00 0.00 3.24
711 2869 5.637810 TGTGTCGTCATCCTTATCAAGAAAC 59.362 40.000 0.00 0.00 0.00 2.78
723 2881 0.163788 CGCAAAGTGTGTCGTCATCC 59.836 55.000 0.00 0.00 0.00 3.51
729 2887 1.083657 CGAACCGCAAAGTGTGTCG 60.084 57.895 0.00 0.00 0.00 4.35
779 2938 0.479815 TGATTGCATGATCCTCCCCC 59.520 55.000 0.00 0.00 0.00 5.40
1266 3433 0.846427 TCTGATCTTGGGCTTGGGGT 60.846 55.000 0.00 0.00 0.00 4.95
1420 3593 3.760035 CACGGTAGGCGGCAGAGT 61.760 66.667 13.08 2.37 0.00 3.24
1509 3682 4.280677 TCGGAGAGGCTACTACTACTACTC 59.719 50.000 0.00 0.00 0.00 2.59
1553 3726 2.203803 GGACGGGGATAGGGGGAG 60.204 72.222 0.00 0.00 0.00 4.30
1584 3757 0.462581 TCTCATCGTCATTGCCTGGC 60.463 55.000 12.87 12.87 0.00 4.85
1586 3759 2.100418 TCTCTCTCATCGTCATTGCCTG 59.900 50.000 0.00 0.00 0.00 4.85
1654 3827 3.820467 TGTTTCGCATCCAAAGAACTGAT 59.180 39.130 0.00 0.00 0.00 2.90
1658 3831 2.552315 TCCTGTTTCGCATCCAAAGAAC 59.448 45.455 0.00 0.00 0.00 3.01
1700 3873 1.065636 CAGCCTCTTCAGCATCCTTGA 60.066 52.381 0.00 0.00 0.00 3.02
1712 3885 1.277557 CTACTGCAACTCCAGCCTCTT 59.722 52.381 0.00 0.00 36.29 2.85
1721 3894 1.471676 CGATCCCCACTACTGCAACTC 60.472 57.143 0.00 0.00 0.00 3.01
1758 3931 5.657826 TGCCAGATATCTGAGATCTAAGC 57.342 43.478 30.40 22.00 46.59 3.09
1770 3943 4.820716 ACTGAATCAAGCTTGCCAGATATC 59.179 41.667 31.31 18.75 0.00 1.63
1777 3950 1.471684 CTGGACTGAATCAAGCTTGCC 59.528 52.381 21.99 14.87 0.00 4.52
1809 3982 4.711949 CTCTTGGCTGCCACGGCT 62.712 66.667 23.30 0.00 42.51 5.52
1812 3985 2.435586 CTCCTCTTGGCTGCCACG 60.436 66.667 23.30 20.54 30.78 4.94
1839 4012 1.280457 CAACCTTCCTCTGCCTACCT 58.720 55.000 0.00 0.00 0.00 3.08
1878 4051 2.226962 AATCCTTGTGCTTGGATGCT 57.773 45.000 0.00 0.00 41.76 3.79
1962 4135 2.688666 TCCAGAGCGGCAAGGGAT 60.689 61.111 1.45 0.00 33.14 3.85
2145 4318 2.699954 ACAGTTTTATGCGAGGTGAGG 58.300 47.619 0.00 0.00 0.00 3.86
2153 4326 6.031549 TCATCGACATTACAGTTTTATGCG 57.968 37.500 0.00 0.00 0.00 4.73
2172 4345 8.498054 TGAATTCAAGGAGTACATCTTTCATC 57.502 34.615 5.45 0.00 0.00 2.92
2176 4349 5.649831 GCCTGAATTCAAGGAGTACATCTTT 59.350 40.000 21.24 0.00 0.00 2.52
2177 4350 5.189180 GCCTGAATTCAAGGAGTACATCTT 58.811 41.667 21.24 0.00 0.00 2.40
2231 4405 5.045872 GGTTTGATGCAATGAAAGCCTATC 58.954 41.667 0.00 0.00 41.11 2.08
2252 4426 8.036585 TGAGTAGCTCTCTAGAAATACTAGGT 57.963 38.462 12.45 0.00 46.08 3.08
2288 4462 5.762825 AGCATTGGCAGATAGTTAACATG 57.237 39.130 8.61 2.37 44.61 3.21
2290 4464 8.210946 AGTATAAGCATTGGCAGATAGTTAACA 58.789 33.333 8.61 0.00 44.61 2.41
2291 4465 8.608844 AGTATAAGCATTGGCAGATAGTTAAC 57.391 34.615 0.00 0.00 44.61 2.01
2292 4466 9.627123 AAAGTATAAGCATTGGCAGATAGTTAA 57.373 29.630 0.00 0.00 44.61 2.01
2372 4570 0.604073 TGGCAGCCATCAACACAATG 59.396 50.000 11.22 0.00 0.00 2.82
2373 4571 1.563924 ATGGCAGCCATCAACACAAT 58.436 45.000 22.36 0.00 40.74 2.71
2383 4581 3.565961 TTGGAAGCGATGGCAGCCA 62.566 57.895 18.99 18.99 43.41 4.75
2384 4582 2.751436 TTGGAAGCGATGGCAGCC 60.751 61.111 3.66 3.66 43.41 4.85
2385 4583 1.865788 TTGTTGGAAGCGATGGCAGC 61.866 55.000 1.50 0.00 43.41 5.25
2386 4584 0.169672 CTTGTTGGAAGCGATGGCAG 59.830 55.000 1.50 0.00 43.41 4.85
2402 4605 7.470935 TGGATTATTATGCCAATGGATCTTG 57.529 36.000 2.05 0.00 0.00 3.02
2456 4662 2.599082 CGACTATCTTGCTGTTCGAACC 59.401 50.000 24.78 11.39 0.00 3.62
2469 4675 5.888724 TCATCCTTCTCTTTCACGACTATCT 59.111 40.000 0.00 0.00 0.00 1.98
2476 4682 6.148480 ACTTCAAATCATCCTTCTCTTTCACG 59.852 38.462 0.00 0.00 0.00 4.35
2505 4711 7.148239 ATCAAATTGATTCGTTTGGACTAGTCC 60.148 37.037 31.61 31.61 41.26 3.85
2511 4717 6.381801 ACTGATCAAATTGATTCGTTTGGAC 58.618 36.000 10.09 0.00 37.20 4.02
2512 4718 6.573664 ACTGATCAAATTGATTCGTTTGGA 57.426 33.333 10.09 0.00 37.20 3.53
2531 4737 7.068226 TGTCCTTTCGTGATCATATAGAACTGA 59.932 37.037 0.00 0.43 0.00 3.41
2584 4790 6.373759 AGTTTCATAAGGGGAATACCATTCC 58.626 40.000 9.08 9.08 39.50 3.01
2624 4846 9.642343 AACTGTCACTGTATTCAGGTAGATATA 57.358 33.333 4.24 0.00 45.14 0.86
2631 4891 8.812972 TCTATTTAACTGTCACTGTATTCAGGT 58.187 33.333 4.24 6.48 45.14 4.00
2632 4892 9.823647 ATCTATTTAACTGTCACTGTATTCAGG 57.176 33.333 4.24 0.00 45.14 3.86
2662 4922 9.237846 GCCAAAAATTCTAGCAACATAGATTAC 57.762 33.333 0.00 0.00 31.96 1.89
2663 4923 8.965819 TGCCAAAAATTCTAGCAACATAGATTA 58.034 29.630 0.00 0.00 31.96 1.75
2664 4924 7.839907 TGCCAAAAATTCTAGCAACATAGATT 58.160 30.769 0.00 0.00 31.96 2.40
2665 4925 7.408756 TGCCAAAAATTCTAGCAACATAGAT 57.591 32.000 0.00 0.00 31.96 1.98
2666 4926 6.832520 TGCCAAAAATTCTAGCAACATAGA 57.167 33.333 0.00 0.00 0.00 1.98
2687 4947 9.774742 CTTAAGAGGTTCATAATTAGTTGTTGC 57.225 33.333 0.00 0.00 0.00 4.17
2710 4970 9.219603 CAGAAACTGAAATGTAGTGAATCCTTA 57.780 33.333 0.00 0.00 32.44 2.69
2754 5014 8.828644 CATCCTAAGAAAGACAGAGATTGAATG 58.171 37.037 0.00 0.00 0.00 2.67
2761 5021 4.081420 GTGGCATCCTAAGAAAGACAGAGA 60.081 45.833 0.00 0.00 0.00 3.10
2785 5045 2.831333 CTTACGGAATCAGCATGCTCT 58.169 47.619 19.68 5.20 34.76 4.09
2827 5087 3.623510 GCCACCCTTCTATTTCTTTCGAG 59.376 47.826 0.00 0.00 0.00 4.04
2889 5149 3.909732 ACCAATTCTGTTTCAACCTCCA 58.090 40.909 0.00 0.00 0.00 3.86
2930 5190 7.004555 TCAAATGCTCTACTGAACCTTCTAA 57.995 36.000 0.00 0.00 0.00 2.10
2957 5217 6.994221 TGTCCTTTTCTCTCTTATCGTCTTT 58.006 36.000 0.00 0.00 0.00 2.52
3001 5261 3.197766 CAGCTAATTCCACTGTGAGGGTA 59.802 47.826 9.86 0.00 0.00 3.69
3007 5267 2.676839 CAGCTCAGCTAATTCCACTGTG 59.323 50.000 0.00 0.00 36.40 3.66
3008 5268 2.938756 GCAGCTCAGCTAATTCCACTGT 60.939 50.000 0.00 0.00 36.40 3.55
3028 5288 2.479566 TCAATCTCACCAACTCCAGC 57.520 50.000 0.00 0.00 0.00 4.85
3043 5303 5.987098 TCAGCTATCTCTGCTTCTTTCAAT 58.013 37.500 0.00 0.00 38.92 2.57
3109 5369 2.356535 GCCATGAAATCTGGAGACCACT 60.357 50.000 0.00 0.00 35.70 4.00
3316 5576 5.633830 TCCTTCTGATTTCAACTGATTGC 57.366 39.130 0.00 0.00 35.63 3.56
3536 5796 5.601729 TCAGAATGAGGATCTTATCAGCACT 59.398 40.000 0.00 0.00 42.56 4.40
3736 5996 1.081641 CAGTGCTTTTGCCTCTGCG 60.082 57.895 0.00 0.00 46.87 5.18
3967 6227 0.108138 CCACTTCCTCACCGTCATCC 60.108 60.000 0.00 0.00 0.00 3.51
4066 6326 8.803235 ACTACAGGCTGAAATATATATTCGTCA 58.197 33.333 23.66 8.62 0.00 4.35
4314 6574 8.693625 GGTATACACTCAATTTACACTACTCCT 58.306 37.037 5.01 0.00 0.00 3.69
4315 6575 8.472413 TGGTATACACTCAATTTACACTACTCC 58.528 37.037 5.01 0.00 0.00 3.85
4316 6576 9.298774 GTGGTATACACTCAATTTACACTACTC 57.701 37.037 5.01 0.00 46.72 2.59
4376 6640 5.450453 TGTACACAAAAATGAGGGAGGAAA 58.550 37.500 0.00 0.00 0.00 3.13
4432 6696 3.242413 CCCGTCGCTGTAAATTCAATCAG 60.242 47.826 0.00 0.00 0.00 2.90
4440 6704 3.118884 ACTGATAACCCGTCGCTGTAAAT 60.119 43.478 0.00 0.00 0.00 1.40
4557 6821 9.466497 AGAATACACATCCACTGATTTATTTGT 57.534 29.630 0.00 0.00 0.00 2.83
4577 6841 6.761242 ACCAAAAGTCTTGCCAAAAAGAATAC 59.239 34.615 0.00 0.00 37.90 1.89
4643 6907 8.815912 AGGAAAACCTGCTGTCAAAAATATATT 58.184 29.630 0.00 0.00 0.00 1.28
4760 7027 2.562738 CCCCCTTTTGGTGATTCTGTTC 59.437 50.000 0.00 0.00 38.10 3.18
4797 7064 6.578944 TGTACAAGTAGAACAAGCAGAAAGA 58.421 36.000 0.00 0.00 0.00 2.52
4867 7134 1.001746 CTCTGAAGCTGGAAGTGCTCA 59.998 52.381 0.00 0.00 40.22 4.26
4978 7245 6.194967 TCTGACTGTCCCTAGAACATGATAA 58.805 40.000 5.17 0.00 0.00 1.75
5089 7356 6.591062 ACTTTCAACAATTGCGCATTATCAAT 59.409 30.769 12.75 0.00 34.66 2.57
5144 7413 6.537355 TCTTCTGATTGCCTATCCAATTAGG 58.463 40.000 6.77 0.00 38.57 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.