Multiple sequence alignment - TraesCS7A01G249900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G249900 chr7A 100.000 5507 0 0 1 5507 232584741 232590247 0.000000e+00 10170
1 TraesCS7A01G249900 chr7B 94.907 2356 87 18 1248 3579 179258528 179256182 0.000000e+00 3655
2 TraesCS7A01G249900 chr7B 90.765 1202 51 21 1 1167 179259702 179258526 0.000000e+00 1550
3 TraesCS7A01G249900 chr7B 94.135 1023 48 5 3564 4579 179256160 179255143 0.000000e+00 1546
4 TraesCS7A01G249900 chr7B 96.700 909 27 3 4599 5507 179255153 179254248 0.000000e+00 1509
5 TraesCS7A01G249900 chr7B 90.099 101 10 0 1153 1253 167622332 167622232 1.240000e-26 132
6 TraesCS7A01G249900 chr7D 94.719 2367 79 16 1248 3586 220274249 220276597 0.000000e+00 3637
7 TraesCS7A01G249900 chr7D 94.081 1926 76 17 3588 5507 220276838 220278731 0.000000e+00 2891
8 TraesCS7A01G249900 chr7D 91.061 716 32 19 1 701 220273096 220273794 0.000000e+00 939
9 TraesCS7A01G249900 chr7D 93.573 389 23 1 779 1167 220273865 220274251 3.700000e-161 579
10 TraesCS7A01G249900 chrUn 95.604 91 3 1 1161 1250 238400598 238400688 1.600000e-30 145
11 TraesCS7A01G249900 chr5D 95.402 87 4 0 1165 1251 575045 575131 7.440000e-29 139
12 TraesCS7A01G249900 chr5D 95.349 86 4 0 1165 1250 229934129 229934214 2.680000e-28 137
13 TraesCS7A01G249900 chr5B 94.382 89 5 0 1162 1250 64720360 64720448 2.680000e-28 137
14 TraesCS7A01G249900 chr5B 76.580 269 47 14 3436 3691 457123194 457123459 3.460000e-27 134
15 TraesCS7A01G249900 chr4D 95.349 86 4 0 1165 1250 465765338 465765253 2.680000e-28 137
16 TraesCS7A01G249900 chr2B 95.349 86 4 0 1165 1250 779865601 779865686 2.680000e-28 137
17 TraesCS7A01G249900 chr2A 95.294 85 4 0 1166 1250 278063212 278063128 9.620000e-28 135
18 TraesCS7A01G249900 chr3B 92.391 92 7 0 1159 1250 738120239 738120330 1.240000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G249900 chr7A 232584741 232590247 5506 False 10170.0 10170 100.00000 1 5507 1 chr7A.!!$F1 5506
1 TraesCS7A01G249900 chr7B 179254248 179259702 5454 True 2065.0 3655 94.12675 1 5507 4 chr7B.!!$R2 5506
2 TraesCS7A01G249900 chr7D 220273096 220278731 5635 False 2011.5 3637 93.35850 1 5507 4 chr7D.!!$F1 5506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 162 0.591659 GCCGTCACAAAAACCTCTCC 59.408 55.0 0.00 0.0 0.00 3.71 F
919 964 0.602638 CAGTACGTGCTTTGGCCTCA 60.603 55.0 2.37 0.0 37.74 3.86 F
982 1027 0.892814 AGCAGCAACCAAGGAGAAGC 60.893 55.0 0.00 0.0 0.00 3.86 F
2682 2758 0.167689 CGAGGCAGCAGAAAGAAAGC 59.832 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1443 1.078143 AAGGGGAGAACATCAGCGC 60.078 57.895 0.0 0.0 0.00 5.92 R
2682 2758 0.179089 CCGGAGAGCACCTTCATCAG 60.179 60.000 0.0 0.0 0.00 2.90 R
2896 2974 4.453480 TCTCACTTTGGGAGGTTTCATT 57.547 40.909 0.0 0.0 33.18 2.57 R
4566 4932 0.167908 CACACACACACACACACACC 59.832 55.000 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 120 2.511600 GAGATTGGGTGCCGGTCG 60.512 66.667 1.90 0.00 0.00 4.79
127 129 4.758251 TGCCGGTCGCTGTCCATG 62.758 66.667 1.90 0.00 38.78 3.66
160 162 0.591659 GCCGTCACAAAAACCTCTCC 59.408 55.000 0.00 0.00 0.00 3.71
164 166 3.064931 CGTCACAAAAACCTCTCCCTAC 58.935 50.000 0.00 0.00 0.00 3.18
217 219 1.456296 CCATGACATCCCACTGTGTG 58.544 55.000 7.08 1.21 0.00 3.82
261 263 4.199310 TCTTTTAATGGAGGAATCGGCAG 58.801 43.478 0.00 0.00 0.00 4.85
262 264 2.638480 TTAATGGAGGAATCGGCAGG 57.362 50.000 0.00 0.00 0.00 4.85
345 355 1.553704 TCCTCGCTCCCTTTTAACCTC 59.446 52.381 0.00 0.00 0.00 3.85
347 357 2.622436 CTCGCTCCCTTTTAACCTCTG 58.378 52.381 0.00 0.00 0.00 3.35
349 359 1.339151 CGCTCCCTTTTAACCTCTGCT 60.339 52.381 0.00 0.00 0.00 4.24
350 360 2.796557 GCTCCCTTTTAACCTCTGCTT 58.203 47.619 0.00 0.00 0.00 3.91
351 361 3.157881 GCTCCCTTTTAACCTCTGCTTT 58.842 45.455 0.00 0.00 0.00 3.51
352 362 3.574396 GCTCCCTTTTAACCTCTGCTTTT 59.426 43.478 0.00 0.00 0.00 2.27
353 363 4.321304 GCTCCCTTTTAACCTCTGCTTTTC 60.321 45.833 0.00 0.00 0.00 2.29
354 364 4.149598 TCCCTTTTAACCTCTGCTTTTCC 58.850 43.478 0.00 0.00 0.00 3.13
355 365 3.258372 CCCTTTTAACCTCTGCTTTTCCC 59.742 47.826 0.00 0.00 0.00 3.97
356 366 4.152647 CCTTTTAACCTCTGCTTTTCCCT 58.847 43.478 0.00 0.00 0.00 4.20
357 367 4.588951 CCTTTTAACCTCTGCTTTTCCCTT 59.411 41.667 0.00 0.00 0.00 3.95
369 379 4.898861 TGCTTTTCCCTTGAGTTTTACCAT 59.101 37.500 0.00 0.00 0.00 3.55
378 388 5.770162 CCTTGAGTTTTACCATCCTTTCACT 59.230 40.000 0.00 0.00 0.00 3.41
393 403 1.557099 TCACTGCACCGTATCTTCCT 58.443 50.000 0.00 0.00 0.00 3.36
400 414 0.978146 ACCGTATCTTCCTGCAGGCT 60.978 55.000 28.91 14.23 34.44 4.58
468 492 3.134081 CCTCGTCCTTTGGCTAATCCTTA 59.866 47.826 0.00 0.00 35.26 2.69
505 529 7.558807 TCGTTGAGTCTTAAATACCATCTCCTA 59.441 37.037 0.00 0.00 0.00 2.94
506 530 8.361139 CGTTGAGTCTTAAATACCATCTCCTAT 58.639 37.037 0.00 0.00 0.00 2.57
510 534 9.843334 GAGTCTTAAATACCATCTCCTATAACG 57.157 37.037 0.00 0.00 0.00 3.18
511 535 9.364653 AGTCTTAAATACCATCTCCTATAACGT 57.635 33.333 0.00 0.00 0.00 3.99
556 580 4.433615 CCTATGCCTATATACAACTGCCG 58.566 47.826 0.00 0.00 0.00 5.69
624 648 2.251818 TGGCTCTTGCTTGTCTCTAGT 58.748 47.619 0.00 0.00 39.59 2.57
634 658 3.744987 CTTGTCTCTAGTACCGTTGTCG 58.255 50.000 0.00 0.00 0.00 4.35
681 706 4.623932 ATTTTTCTTCCCTTCCCTTTGC 57.376 40.909 0.00 0.00 0.00 3.68
691 716 2.431454 CTTCCCTTTGCCTTCTCTGTC 58.569 52.381 0.00 0.00 0.00 3.51
693 718 1.349026 TCCCTTTGCCTTCTCTGTCTG 59.651 52.381 0.00 0.00 0.00 3.51
701 726 1.265236 CTTCTCTGTCTGGTGGAGCT 58.735 55.000 0.00 0.00 0.00 4.09
703 728 0.902048 TCTCTGTCTGGTGGAGCTGG 60.902 60.000 0.00 0.00 0.00 4.85
722 761 3.841255 CTGGGAGAGGTAGAGAAGGTTTT 59.159 47.826 0.00 0.00 0.00 2.43
723 762 3.838903 TGGGAGAGGTAGAGAAGGTTTTC 59.161 47.826 0.00 0.00 0.00 2.29
762 807 4.019860 GGCTGATCAATCATAGCCTCCTTA 60.020 45.833 12.82 0.00 42.00 2.69
763 808 5.513788 GGCTGATCAATCATAGCCTCCTTAA 60.514 44.000 12.82 0.00 42.00 1.85
764 809 5.642919 GCTGATCAATCATAGCCTCCTTAAG 59.357 44.000 0.00 0.00 36.02 1.85
765 810 6.743773 GCTGATCAATCATAGCCTCCTTAAGT 60.744 42.308 0.97 0.00 36.02 2.24
777 822 4.456222 GCCTCCTTAAGTTCTTCTGTTTCC 59.544 45.833 0.97 0.00 0.00 3.13
784 829 2.554032 AGTTCTTCTGTTTCCATTGGCG 59.446 45.455 0.00 0.00 0.00 5.69
919 964 0.602638 CAGTACGTGCTTTGGCCTCA 60.603 55.000 2.37 0.00 37.74 3.86
970 1015 0.962356 GGGCTAAGCAGAAGCAGCAA 60.962 55.000 0.00 0.00 45.49 3.91
982 1027 0.892814 AGCAGCAACCAAGGAGAAGC 60.893 55.000 0.00 0.00 0.00 3.86
1076 1121 4.040376 CGAAGGTTAGTATACGCAGTTCC 58.960 47.826 0.00 0.00 37.78 3.62
1077 1122 4.439153 CGAAGGTTAGTATACGCAGTTCCA 60.439 45.833 0.00 0.00 37.78 3.53
1078 1123 4.382345 AGGTTAGTATACGCAGTTCCAC 57.618 45.455 0.00 0.00 37.78 4.02
1163 1208 5.509716 TTCTTTCGGCGAGATGATAACTA 57.490 39.130 10.46 0.00 0.00 2.24
1164 1209 5.109662 TCTTTCGGCGAGATGATAACTAG 57.890 43.478 10.46 0.00 0.00 2.57
1165 1210 4.579340 TCTTTCGGCGAGATGATAACTAGT 59.421 41.667 10.46 0.00 0.00 2.57
1166 1211 5.761726 TCTTTCGGCGAGATGATAACTAGTA 59.238 40.000 10.46 0.00 0.00 1.82
1167 1212 5.354054 TTCGGCGAGATGATAACTAGTAC 57.646 43.478 10.46 0.00 0.00 2.73
1168 1213 4.639334 TCGGCGAGATGATAACTAGTACT 58.361 43.478 4.99 0.00 0.00 2.73
1169 1214 4.689812 TCGGCGAGATGATAACTAGTACTC 59.310 45.833 4.99 0.00 0.00 2.59
1170 1215 4.142859 CGGCGAGATGATAACTAGTACTCC 60.143 50.000 0.00 0.00 0.00 3.85
1171 1216 4.156373 GGCGAGATGATAACTAGTACTCCC 59.844 50.000 0.00 0.51 0.00 4.30
1172 1217 5.005094 GCGAGATGATAACTAGTACTCCCT 58.995 45.833 0.00 0.00 0.00 4.20
1173 1218 5.122711 GCGAGATGATAACTAGTACTCCCTC 59.877 48.000 0.00 5.24 0.00 4.30
1174 1219 5.644636 CGAGATGATAACTAGTACTCCCTCC 59.355 48.000 0.00 0.00 0.00 4.30
1175 1220 5.562635 AGATGATAACTAGTACTCCCTCCG 58.437 45.833 0.00 0.00 0.00 4.63
1176 1221 4.785346 TGATAACTAGTACTCCCTCCGT 57.215 45.455 0.00 0.00 0.00 4.69
1177 1222 5.894298 TGATAACTAGTACTCCCTCCGTA 57.106 43.478 0.00 0.00 0.00 4.02
1178 1223 6.252599 TGATAACTAGTACTCCCTCCGTAA 57.747 41.667 0.00 0.00 0.00 3.18
1179 1224 6.662755 TGATAACTAGTACTCCCTCCGTAAA 58.337 40.000 0.00 0.00 0.00 2.01
1180 1225 6.543831 TGATAACTAGTACTCCCTCCGTAAAC 59.456 42.308 0.00 0.00 0.00 2.01
1181 1226 4.582973 ACTAGTACTCCCTCCGTAAACT 57.417 45.455 0.00 0.00 0.00 2.66
1182 1227 4.268359 ACTAGTACTCCCTCCGTAAACTG 58.732 47.826 0.00 0.00 0.00 3.16
1183 1228 3.446442 AGTACTCCCTCCGTAAACTGA 57.554 47.619 0.00 0.00 0.00 3.41
1184 1229 3.978610 AGTACTCCCTCCGTAAACTGAT 58.021 45.455 0.00 0.00 0.00 2.90
1185 1230 5.121380 AGTACTCCCTCCGTAAACTGATA 57.879 43.478 0.00 0.00 0.00 2.15
1186 1231 5.703310 AGTACTCCCTCCGTAAACTGATAT 58.297 41.667 0.00 0.00 0.00 1.63
1187 1232 6.845908 AGTACTCCCTCCGTAAACTGATATA 58.154 40.000 0.00 0.00 0.00 0.86
1188 1233 7.293073 AGTACTCCCTCCGTAAACTGATATAA 58.707 38.462 0.00 0.00 0.00 0.98
1189 1234 6.651975 ACTCCCTCCGTAAACTGATATAAG 57.348 41.667 0.00 0.00 0.00 1.73
1190 1235 6.371278 ACTCCCTCCGTAAACTGATATAAGA 58.629 40.000 0.00 0.00 0.00 2.10
1191 1236 6.490721 ACTCCCTCCGTAAACTGATATAAGAG 59.509 42.308 0.00 0.00 0.00 2.85
1192 1237 5.243283 TCCCTCCGTAAACTGATATAAGAGC 59.757 44.000 0.00 0.00 0.00 4.09
1193 1238 5.154932 CCTCCGTAAACTGATATAAGAGCG 58.845 45.833 0.00 0.00 0.00 5.03
1194 1239 5.278364 CCTCCGTAAACTGATATAAGAGCGT 60.278 44.000 0.00 0.00 0.00 5.07
1195 1240 6.140303 TCCGTAAACTGATATAAGAGCGTT 57.860 37.500 0.00 0.00 0.00 4.84
1196 1241 6.567050 TCCGTAAACTGATATAAGAGCGTTT 58.433 36.000 0.00 0.00 0.00 3.60
1197 1242 7.706159 TCCGTAAACTGATATAAGAGCGTTTA 58.294 34.615 0.00 0.00 0.00 2.01
1198 1243 7.859377 TCCGTAAACTGATATAAGAGCGTTTAG 59.141 37.037 0.00 0.00 29.54 1.85
1199 1244 7.859377 CCGTAAACTGATATAAGAGCGTTTAGA 59.141 37.037 0.00 0.00 29.54 2.10
1200 1245 9.395707 CGTAAACTGATATAAGAGCGTTTAGAT 57.604 33.333 0.00 0.00 29.54 1.98
1244 1289 8.530269 AACGCTCTTATATTAATTTACGGAGG 57.470 34.615 0.00 0.00 0.00 4.30
1245 1290 7.095270 ACGCTCTTATATTAATTTACGGAGGG 58.905 38.462 18.58 18.58 37.30 4.30
1246 1291 7.039504 ACGCTCTTATATTAATTTACGGAGGGA 60.040 37.037 22.59 0.00 35.94 4.20
1307 1352 4.712051 ATATGCAGGACAATTCTAGCCA 57.288 40.909 0.00 0.00 0.00 4.75
1348 1393 7.916552 ACGTATATTTTCTGCCAATCTTACAC 58.083 34.615 0.00 0.00 0.00 2.90
1357 1408 3.936453 TGCCAATCTTACACGGTTGTATC 59.064 43.478 0.00 0.00 38.05 2.24
1384 1435 3.991773 TCATAATATTACCGAAGCCGTGC 59.008 43.478 0.00 0.00 0.00 5.34
1403 1454 1.633171 CGTAGCAGCGCTGATGTTC 59.367 57.895 40.21 25.21 40.10 3.18
1664 1727 9.503427 GTTACTTTAAATGAATATGTGCCTGAC 57.497 33.333 0.00 0.00 0.00 3.51
1669 1732 6.382869 AAATGAATATGTGCCTGACTAAGC 57.617 37.500 0.00 0.00 0.00 3.09
1865 1929 8.760980 AATGCTACTACTCTTCAGATTCTACT 57.239 34.615 0.00 0.00 0.00 2.57
1880 1944 9.915629 TCAGATTCTACTTTCTTACTGAGTTTC 57.084 33.333 0.00 0.00 0.00 2.78
1887 1952 9.198837 CTACTTTCTTACTGAGTTTCTTTCTCC 57.801 37.037 0.00 0.00 0.00 3.71
1888 1953 7.797062 ACTTTCTTACTGAGTTTCTTTCTCCT 58.203 34.615 0.00 0.00 0.00 3.69
1898 1963 6.998074 TGAGTTTCTTTCTCCTTCATGCTTTA 59.002 34.615 0.00 0.00 0.00 1.85
1940 2005 7.688534 ACCAATCAGGATAATATTCCCCATAGA 59.311 37.037 8.28 4.52 41.22 1.98
2251 2316 5.530171 TGAGCCATGATTATGCTCTCTTTTC 59.470 40.000 17.98 0.00 37.84 2.29
2664 2740 1.200839 GTCAAGAAACGCACCGTCG 59.799 57.895 0.00 0.00 39.99 5.12
2682 2758 0.167689 CGAGGCAGCAGAAAGAAAGC 59.832 55.000 0.00 0.00 0.00 3.51
2735 2811 1.834263 AGGAGTCAGCATCCTACAACC 59.166 52.381 0.00 0.00 45.58 3.77
2793 2869 6.142817 CGGTTTTTCTTCTTCGTTCATTCAT 58.857 36.000 0.00 0.00 0.00 2.57
2805 2881 9.389755 TCTTCGTTCATTCATTATTTACCATCA 57.610 29.630 0.00 0.00 0.00 3.07
2852 2929 8.199449 CCAAACTCATGCCAATGTTATCTAAAT 58.801 33.333 0.00 0.00 35.15 1.40
2919 2997 3.754965 TGAAACCTCCCAAAGTGAGATG 58.245 45.455 0.00 0.00 31.26 2.90
3019 3097 6.579666 AATTTCTTGAGTGCTTCTATTGCA 57.420 33.333 0.00 0.00 38.19 4.08
3052 3130 1.206371 AGGATTGCATGCAAGCTTTCC 59.794 47.619 38.40 34.31 41.50 3.13
3217 3295 2.743928 CCCCGACTCAGCTGCAAC 60.744 66.667 9.47 1.25 0.00 4.17
3235 3313 1.215655 ACGTTGACGCAAGCTCTGAC 61.216 55.000 3.05 0.00 44.43 3.51
3277 3355 5.104941 TGAGAATAATGACCAGTACAGTGGG 60.105 44.000 7.96 0.00 42.54 4.61
3322 3400 5.725110 ATATTGATGCAGACAAGTTCGAC 57.275 39.130 13.10 0.00 0.00 4.20
3346 3424 5.990120 ATGCCTCTAAAATGCTTGAAACT 57.010 34.783 0.00 0.00 0.00 2.66
3354 3432 9.383519 CTCTAAAATGCTTGAAACTATCAGGTA 57.616 33.333 0.00 0.00 39.77 3.08
3365 3443 6.014584 TGAAACTATCAGGTAAGCAACTCTGA 60.015 38.462 10.55 10.55 38.75 3.27
3377 3455 7.433425 GGTAAGCAACTCTGAAAATGAATATGC 59.567 37.037 0.00 0.00 0.00 3.14
3380 3458 7.380536 AGCAACTCTGAAAATGAATATGCAAA 58.619 30.769 0.00 0.00 32.76 3.68
3398 3476 5.596845 TGCAAAACAATAAACCACTCTTCC 58.403 37.500 0.00 0.00 0.00 3.46
3533 3611 4.635765 ACAACGCTTTAGTGATGCATGTAT 59.364 37.500 2.46 0.00 32.51 2.29
3540 3618 7.198390 GCTTTAGTGATGCATGTATGTTCAAT 58.802 34.615 2.46 0.00 0.00 2.57
3579 3661 9.126151 TCTTTAAATGTGTTCATGTTAACCTCA 57.874 29.630 2.48 0.00 34.19 3.86
3602 3962 8.094798 TCAAAATATATTCATGTCTAACCCGC 57.905 34.615 0.00 0.00 0.00 6.13
3604 3964 7.672983 AAATATATTCATGTCTAACCCGCAG 57.327 36.000 0.00 0.00 0.00 5.18
3605 3965 4.955811 ATATTCATGTCTAACCCGCAGA 57.044 40.909 0.00 0.00 0.00 4.26
3611 3971 0.460459 GTCTAACCCGCAGAGGCTTC 60.460 60.000 0.00 0.00 39.21 3.86
3613 3973 0.250513 CTAACCCGCAGAGGCTTCTT 59.749 55.000 0.00 0.00 39.21 2.52
3646 4006 4.646492 AGGCTTTTATGGCTTATGGACTTG 59.354 41.667 0.00 0.00 40.00 3.16
3666 4026 2.948979 TGAGGACAAACGCATGAAAAGT 59.051 40.909 0.00 0.00 0.00 2.66
3810 4175 1.679032 GGCGGGCATTCAGTAAACTCT 60.679 52.381 0.00 0.00 0.00 3.24
3813 4178 2.932614 CGGGCATTCAGTAAACTCTCAG 59.067 50.000 0.00 0.00 0.00 3.35
3877 4242 1.105167 CCTGGTATGGCATGCACCTG 61.105 60.000 21.36 20.29 33.28 4.00
3898 4263 3.184541 GCATTGCAGTTTCCATTAGCAG 58.815 45.455 3.15 0.00 36.47 4.24
4008 4374 0.035725 CAGCATCAGGAAGCTCCACA 60.036 55.000 0.00 0.00 39.61 4.17
4025 4391 3.455543 TCCACACATCCATATGCTCTTCA 59.544 43.478 0.00 0.00 36.50 3.02
4059 4425 3.494626 CGCTTGCTCACTTTAGTCTTTCA 59.505 43.478 0.00 0.00 0.00 2.69
4134 4500 9.723601 ATTTTAACTGCAAAATGACCACATTAT 57.276 25.926 0.00 0.00 44.67 1.28
4234 4600 4.202111 GGTTGTACACAGCCAAGAAATTGT 60.202 41.667 10.06 0.00 45.24 2.71
4236 4602 5.682943 TGTACACAGCCAAGAAATTGTAC 57.317 39.130 0.00 0.00 39.72 2.90
4296 4662 3.377253 AATGTCATGGTCAGGAAGCAT 57.623 42.857 0.00 0.00 46.92 3.79
4302 4668 4.694509 GTCATGGTCAGGAAGCATATCATC 59.305 45.833 0.00 0.00 44.18 2.92
4358 4724 0.321671 GCTACACTGGAGTTGCCTGA 59.678 55.000 0.00 0.00 38.83 3.86
4491 4857 6.894339 TCTTTCAGATACACTGTACACAGA 57.106 37.500 16.05 0.00 46.59 3.41
4567 4933 8.960591 AGTAATGAACTGGAAATCATTAACTGG 58.039 33.333 9.15 0.00 45.23 4.00
4568 4934 7.781324 AATGAACTGGAAATCATTAACTGGT 57.219 32.000 0.00 0.00 42.77 4.00
4569 4935 6.573664 TGAACTGGAAATCATTAACTGGTG 57.426 37.500 0.00 0.00 0.00 4.17
4570 4936 6.068010 TGAACTGGAAATCATTAACTGGTGT 58.932 36.000 0.00 0.00 0.00 4.16
4571 4937 5.964958 ACTGGAAATCATTAACTGGTGTG 57.035 39.130 0.00 0.00 0.00 3.82
4572 4938 5.385198 ACTGGAAATCATTAACTGGTGTGT 58.615 37.500 0.00 0.00 0.00 3.72
4573 4939 5.241506 ACTGGAAATCATTAACTGGTGTGTG 59.758 40.000 0.00 0.00 0.00 3.82
4574 4940 5.136828 TGGAAATCATTAACTGGTGTGTGT 58.863 37.500 0.00 0.00 0.00 3.72
4575 4941 5.009510 TGGAAATCATTAACTGGTGTGTGTG 59.990 40.000 0.00 0.00 0.00 3.82
4576 4942 5.009610 GGAAATCATTAACTGGTGTGTGTGT 59.990 40.000 0.00 0.00 0.00 3.72
4577 4943 5.437289 AATCATTAACTGGTGTGTGTGTG 57.563 39.130 0.00 0.00 0.00 3.82
4578 4944 3.879998 TCATTAACTGGTGTGTGTGTGT 58.120 40.909 0.00 0.00 0.00 3.72
4579 4945 3.625313 TCATTAACTGGTGTGTGTGTGTG 59.375 43.478 0.00 0.00 0.00 3.82
4580 4946 2.772077 TAACTGGTGTGTGTGTGTGT 57.228 45.000 0.00 0.00 0.00 3.72
4581 4947 1.164411 AACTGGTGTGTGTGTGTGTG 58.836 50.000 0.00 0.00 0.00 3.82
4582 4948 0.036164 ACTGGTGTGTGTGTGTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
4583 4949 0.447406 CTGGTGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 0.00 3.82
4584 4950 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
4585 4951 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
4586 4952 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4587 4953 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4588 4954 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4589 4955 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4590 4956 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4591 4957 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4606 4972 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
4636 5002 7.178628 ACTGTGTAATTAGGTGACTGTGATAGT 59.821 37.037 0.00 0.00 43.88 2.12
4685 5051 8.804743 CATTTGAAATGAATAGAACATGACAGC 58.195 33.333 12.37 0.00 0.00 4.40
4705 5071 2.726241 GCTGGAAAATTCACACGCTTTC 59.274 45.455 0.00 0.00 0.00 2.62
4721 5087 5.123820 CACGCTTTCCTTGGAAGAAATATGA 59.876 40.000 2.16 0.00 33.01 2.15
4783 5149 4.320494 GCACTGAACATTCGGAAAACATCT 60.320 41.667 7.45 0.00 37.03 2.90
4905 5271 4.563580 GCTACATGGGAACTGAAGAGACAA 60.564 45.833 0.00 0.00 0.00 3.18
4911 5277 4.202264 TGGGAACTGAAGAGACAAGAAGAC 60.202 45.833 0.00 0.00 0.00 3.01
4915 5281 3.323403 ACTGAAGAGACAAGAAGACCAGG 59.677 47.826 0.00 0.00 0.00 4.45
4999 5365 1.762370 TCACTGAGACTGCACCTTGAA 59.238 47.619 0.00 0.00 0.00 2.69
5023 5389 5.665916 TCATCTGCTTGAGTATCTTGTGA 57.334 39.130 0.00 0.00 34.92 3.58
5347 5713 4.035843 AGGAACTCGGCAGTAGGG 57.964 61.111 0.00 0.00 30.14 3.53
5424 5790 0.833287 CCGATCATGACCTCCCTGTT 59.167 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 6.481313 CGAAATTCAGTGACATGATGACCTAT 59.519 38.462 0.00 0.00 0.00 2.57
127 129 4.695231 CGGCACAGCAGCTGCAAC 62.695 66.667 38.24 23.52 45.16 4.17
149 151 4.846940 AGATGTCTGTAGGGAGAGGTTTTT 59.153 41.667 0.00 0.00 0.00 1.94
160 162 9.650539 CAATGATAGGATTAAGATGTCTGTAGG 57.349 37.037 0.00 0.00 0.00 3.18
164 166 6.648310 ACGCAATGATAGGATTAAGATGTCTG 59.352 38.462 0.00 0.00 0.00 3.51
345 355 4.340950 TGGTAAAACTCAAGGGAAAAGCAG 59.659 41.667 0.00 0.00 0.00 4.24
347 357 4.929819 TGGTAAAACTCAAGGGAAAAGC 57.070 40.909 0.00 0.00 0.00 3.51
349 359 5.711698 AGGATGGTAAAACTCAAGGGAAAA 58.288 37.500 0.00 0.00 0.00 2.29
350 360 5.333566 AGGATGGTAAAACTCAAGGGAAA 57.666 39.130 0.00 0.00 0.00 3.13
351 361 5.333566 AAGGATGGTAAAACTCAAGGGAA 57.666 39.130 0.00 0.00 0.00 3.97
352 362 5.163034 TGAAAGGATGGTAAAACTCAAGGGA 60.163 40.000 0.00 0.00 0.00 4.20
353 363 5.048013 GTGAAAGGATGGTAAAACTCAAGGG 60.048 44.000 0.00 0.00 0.00 3.95
354 364 5.770162 AGTGAAAGGATGGTAAAACTCAAGG 59.230 40.000 0.00 0.00 0.00 3.61
355 365 6.672147 CAGTGAAAGGATGGTAAAACTCAAG 58.328 40.000 0.00 0.00 0.00 3.02
356 366 5.009610 GCAGTGAAAGGATGGTAAAACTCAA 59.990 40.000 0.00 0.00 0.00 3.02
357 367 4.518970 GCAGTGAAAGGATGGTAAAACTCA 59.481 41.667 0.00 0.00 0.00 3.41
369 379 1.899814 AGATACGGTGCAGTGAAAGGA 59.100 47.619 0.00 0.00 0.00 3.36
378 388 0.108186 CTGCAGGAAGATACGGTGCA 60.108 55.000 5.57 0.00 41.72 4.57
400 414 1.417145 AGCAAAGGGAAAGCAAATGCA 59.583 42.857 8.28 0.00 45.16 3.96
468 492 1.889454 CTCAACGAGAGGAGCAGCT 59.111 57.895 0.00 0.00 40.84 4.24
505 529 9.534565 GATAATCATGAGCCATATGTACGTTAT 57.465 33.333 0.09 0.00 0.00 1.89
506 530 8.749354 AGATAATCATGAGCCATATGTACGTTA 58.251 33.333 0.09 0.00 0.00 3.18
508 532 7.175347 AGATAATCATGAGCCATATGTACGT 57.825 36.000 0.09 0.00 0.00 3.57
509 533 6.699204 GGAGATAATCATGAGCCATATGTACG 59.301 42.308 0.09 0.00 0.00 3.67
510 534 6.989169 GGGAGATAATCATGAGCCATATGTAC 59.011 42.308 0.09 0.00 0.00 2.90
511 535 6.905215 AGGGAGATAATCATGAGCCATATGTA 59.095 38.462 0.09 0.00 0.00 2.29
512 536 5.730207 AGGGAGATAATCATGAGCCATATGT 59.270 40.000 0.09 0.00 0.00 2.29
624 648 2.129607 GAGTTTTGCTCGACAACGGTA 58.870 47.619 0.76 0.00 38.23 4.02
634 658 4.248691 AGGAAAATGCAGAGTTTTGCTC 57.751 40.909 11.01 0.00 41.42 4.26
681 706 0.248843 GCTCCACCAGACAGAGAAGG 59.751 60.000 0.00 0.00 0.00 3.46
691 716 2.365586 CCTCTCCCAGCTCCACCAG 61.366 68.421 0.00 0.00 0.00 4.00
693 718 1.001760 TACCTCTCCCAGCTCCACC 59.998 63.158 0.00 0.00 0.00 4.61
701 726 3.562108 AAACCTTCTCTACCTCTCCCA 57.438 47.619 0.00 0.00 0.00 4.37
722 761 1.685765 CCTGGTCCGGGTGATGAGA 60.686 63.158 8.83 0.00 0.00 3.27
723 762 2.903357 CCTGGTCCGGGTGATGAG 59.097 66.667 8.83 0.00 0.00 2.90
777 822 1.396996 GTGTACTACAAGCCGCCAATG 59.603 52.381 0.00 0.00 0.00 2.82
784 829 2.457366 ACTGCTGTGTACTACAAGCC 57.543 50.000 15.15 0.00 39.20 4.35
919 964 1.341080 CCAAGAACCTGCCAACCATT 58.659 50.000 0.00 0.00 0.00 3.16
970 1015 2.038295 CTGAGTTCTGCTTCTCCTTGGT 59.962 50.000 0.00 0.00 0.00 3.67
982 1027 2.617308 CCATGGCTAATGCTGAGTTCTG 59.383 50.000 0.00 0.00 39.59 3.02
1067 1112 1.981256 AAAGATTGGTGGAACTGCGT 58.019 45.000 0.00 0.00 36.74 5.24
1069 1114 3.858503 GCTGAAAAGATTGGTGGAACTGC 60.859 47.826 0.00 0.00 36.74 4.40
1072 1117 4.240096 CATGCTGAAAAGATTGGTGGAAC 58.760 43.478 0.00 0.00 0.00 3.62
1073 1118 3.258872 CCATGCTGAAAAGATTGGTGGAA 59.741 43.478 0.00 0.00 0.00 3.53
1074 1119 2.827322 CCATGCTGAAAAGATTGGTGGA 59.173 45.455 0.00 0.00 0.00 4.02
1076 1121 3.581755 CACCATGCTGAAAAGATTGGTG 58.418 45.455 5.59 5.59 45.59 4.17
1077 1122 3.499338 TCACCATGCTGAAAAGATTGGT 58.501 40.909 0.00 0.00 37.96 3.67
1078 1123 4.158949 TGATCACCATGCTGAAAAGATTGG 59.841 41.667 0.00 0.00 0.00 3.16
1163 1208 3.446442 TCAGTTTACGGAGGGAGTACT 57.554 47.619 0.00 0.00 0.00 2.73
1164 1209 7.446625 TCTTATATCAGTTTACGGAGGGAGTAC 59.553 40.741 0.00 0.00 0.00 2.73
1165 1210 7.520798 TCTTATATCAGTTTACGGAGGGAGTA 58.479 38.462 0.00 0.00 0.00 2.59
1166 1211 6.371278 TCTTATATCAGTTTACGGAGGGAGT 58.629 40.000 0.00 0.00 0.00 3.85
1167 1212 6.570764 GCTCTTATATCAGTTTACGGAGGGAG 60.571 46.154 0.00 0.00 0.00 4.30
1168 1213 5.243283 GCTCTTATATCAGTTTACGGAGGGA 59.757 44.000 0.00 0.00 0.00 4.20
1169 1214 5.471257 GCTCTTATATCAGTTTACGGAGGG 58.529 45.833 0.00 0.00 0.00 4.30
1170 1215 5.154932 CGCTCTTATATCAGTTTACGGAGG 58.845 45.833 0.00 0.00 0.00 4.30
1171 1216 5.759963 ACGCTCTTATATCAGTTTACGGAG 58.240 41.667 0.00 0.00 0.00 4.63
1172 1217 5.762825 ACGCTCTTATATCAGTTTACGGA 57.237 39.130 0.00 0.00 0.00 4.69
1173 1218 6.823678 AAACGCTCTTATATCAGTTTACGG 57.176 37.500 0.00 0.00 31.14 4.02
1174 1219 8.778141 TCTAAACGCTCTTATATCAGTTTACG 57.222 34.615 0.00 0.00 34.29 3.18
1218 1263 8.985805 CCTCCGTAAATTAATATAAGAGCGTTT 58.014 33.333 0.00 0.00 0.00 3.60
1219 1264 7.601508 CCCTCCGTAAATTAATATAAGAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
1220 1265 7.039504 TCCCTCCGTAAATTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
1221 1266 7.318141 TCCCTCCGTAAATTAATATAAGAGCG 58.682 38.462 0.00 0.00 0.00 5.03
1222 1267 8.312564 ACTCCCTCCGTAAATTAATATAAGAGC 58.687 37.037 0.00 0.00 0.00 4.09
1229 1274 9.617523 CCTTTTTACTCCCTCCGTAAATTAATA 57.382 33.333 0.00 0.00 36.89 0.98
1230 1275 8.111545 ACCTTTTTACTCCCTCCGTAAATTAAT 58.888 33.333 0.00 0.00 36.89 1.40
1231 1276 7.460910 ACCTTTTTACTCCCTCCGTAAATTAA 58.539 34.615 0.00 0.00 36.89 1.40
1232 1277 7.019656 ACCTTTTTACTCCCTCCGTAAATTA 57.980 36.000 0.00 0.00 36.89 1.40
1233 1278 5.884322 ACCTTTTTACTCCCTCCGTAAATT 58.116 37.500 0.00 0.00 36.89 1.82
1234 1279 5.509832 ACCTTTTTACTCCCTCCGTAAAT 57.490 39.130 0.00 0.00 36.89 1.40
1235 1280 4.980339 ACCTTTTTACTCCCTCCGTAAA 57.020 40.909 0.00 0.00 35.65 2.01
1236 1281 7.732222 TTATACCTTTTTACTCCCTCCGTAA 57.268 36.000 0.00 0.00 0.00 3.18
1237 1282 7.619302 TCTTTATACCTTTTTACTCCCTCCGTA 59.381 37.037 0.00 0.00 0.00 4.02
1238 1283 6.441604 TCTTTATACCTTTTTACTCCCTCCGT 59.558 38.462 0.00 0.00 0.00 4.69
1239 1284 6.881570 TCTTTATACCTTTTTACTCCCTCCG 58.118 40.000 0.00 0.00 0.00 4.63
1240 1285 6.766944 GCTCTTTATACCTTTTTACTCCCTCC 59.233 42.308 0.00 0.00 0.00 4.30
1241 1286 7.336396 TGCTCTTTATACCTTTTTACTCCCTC 58.664 38.462 0.00 0.00 0.00 4.30
1242 1287 7.037514 ACTGCTCTTTATACCTTTTTACTCCCT 60.038 37.037 0.00 0.00 0.00 4.20
1243 1288 7.110810 ACTGCTCTTTATACCTTTTTACTCCC 58.889 38.462 0.00 0.00 0.00 4.30
1244 1289 8.563123 AACTGCTCTTTATACCTTTTTACTCC 57.437 34.615 0.00 0.00 0.00 3.85
1348 1393 8.604035 GGTAATATTATGATGCTGATACAACCG 58.396 37.037 0.00 0.00 0.00 4.44
1357 1408 5.220472 CGGCTTCGGTAATATTATGATGCTG 60.220 44.000 23.03 21.79 32.30 4.41
1384 1435 1.756375 GAACATCAGCGCTGCTACGG 61.756 60.000 32.44 19.74 36.40 4.02
1392 1443 1.078143 AAGGGGAGAACATCAGCGC 60.078 57.895 0.00 0.00 0.00 5.92
1403 1454 6.151817 CCTTTACATTCAGAAAAGAAGGGGAG 59.848 42.308 8.86 0.00 33.87 4.30
1656 1719 5.412904 AGTTAGAAAATGCTTAGTCAGGCAC 59.587 40.000 0.00 0.00 41.39 5.01
1842 1906 8.582657 AAAGTAGAATCTGAAGAGTAGTAGCA 57.417 34.615 0.00 0.00 0.00 3.49
1865 1929 8.265055 TGAAGGAGAAAGAAACTCAGTAAGAAA 58.735 33.333 0.00 0.00 36.26 2.52
1871 1935 4.759183 GCATGAAGGAGAAAGAAACTCAGT 59.241 41.667 0.00 0.00 36.26 3.41
1874 1938 5.956068 AAGCATGAAGGAGAAAGAAACTC 57.044 39.130 0.00 0.00 0.00 3.01
1879 1943 7.011763 CGATCATTAAAGCATGAAGGAGAAAGA 59.988 37.037 0.00 0.00 36.74 2.52
1880 1944 7.130917 CGATCATTAAAGCATGAAGGAGAAAG 58.869 38.462 0.00 0.00 36.74 2.62
1887 1952 4.912214 TGCACGATCATTAAAGCATGAAG 58.088 39.130 0.00 0.00 36.74 3.02
1888 1953 4.635324 TCTGCACGATCATTAAAGCATGAA 59.365 37.500 0.00 0.00 36.74 2.57
1898 1963 2.183478 TGGTTGTCTGCACGATCATT 57.817 45.000 0.00 0.00 0.00 2.57
1940 2005 6.685116 GCTCTGCTAGGTTGAGTGAATATCTT 60.685 42.308 0.00 0.00 0.00 2.40
1946 2011 1.970640 TGCTCTGCTAGGTTGAGTGAA 59.029 47.619 0.00 0.00 0.00 3.18
2664 2740 1.199558 CAGCTTTCTTTCTGCTGCCTC 59.800 52.381 0.00 0.00 45.76 4.70
2682 2758 0.179089 CCGGAGAGCACCTTCATCAG 60.179 60.000 0.00 0.00 0.00 2.90
2793 2869 7.553881 GCTGACTAGCTTTGATGGTAAATAA 57.446 36.000 0.00 0.00 46.57 1.40
2896 2974 4.453480 TCTCACTTTGGGAGGTTTCATT 57.547 40.909 0.00 0.00 33.18 2.57
2919 2997 6.745159 ATGATATGAAAGCTGCATCAGATC 57.255 37.500 24.13 24.13 42.05 2.75
3019 3097 2.091720 TGCAATCCTGGGCACATATTCT 60.092 45.455 0.00 0.00 34.58 2.40
3052 3130 5.757320 AGAAATGCATCTTAGAATGTCCTCG 59.243 40.000 0.00 0.00 0.00 4.63
3217 3295 1.215014 TGTCAGAGCTTGCGTCAACG 61.215 55.000 0.00 0.00 43.27 4.10
3252 3330 5.812642 CCACTGTACTGGTCATTATTCTCAC 59.187 44.000 4.66 0.00 0.00 3.51
3322 3400 7.093322 AGTTTCAAGCATTTTAGAGGCATAG 57.907 36.000 0.00 0.00 0.00 2.23
3346 3424 7.394016 TCATTTTCAGAGTTGCTTACCTGATA 58.606 34.615 0.00 0.00 35.44 2.15
3354 3432 6.927416 TGCATATTCATTTTCAGAGTTGCTT 58.073 32.000 0.00 0.00 0.00 3.91
3377 3455 7.661040 AGATGGAAGAGTGGTTTATTGTTTTG 58.339 34.615 0.00 0.00 0.00 2.44
3380 3458 6.542821 TGAGATGGAAGAGTGGTTTATTGTT 58.457 36.000 0.00 0.00 0.00 2.83
3390 3468 2.606725 GCGATGTTGAGATGGAAGAGTG 59.393 50.000 0.00 0.00 0.00 3.51
3398 3476 4.978186 AGACAAAATGCGATGTTGAGATG 58.022 39.130 6.18 0.00 0.00 2.90
3579 3661 7.936847 TCTGCGGGTTAGACATGAATATATTTT 59.063 33.333 0.00 0.00 0.00 1.82
3583 3703 5.047306 CCTCTGCGGGTTAGACATGAATATA 60.047 44.000 0.00 0.00 0.00 0.86
3602 3962 5.238214 GCCTGTCATATTTAAGAAGCCTCTG 59.762 44.000 0.00 0.00 30.03 3.35
3604 3964 5.372373 AGCCTGTCATATTTAAGAAGCCTC 58.628 41.667 0.00 0.00 0.00 4.70
3605 3965 5.379706 AGCCTGTCATATTTAAGAAGCCT 57.620 39.130 0.00 0.00 0.00 4.58
3611 3971 7.945134 AGCCATAAAAGCCTGTCATATTTAAG 58.055 34.615 0.00 0.00 0.00 1.85
3613 3973 7.896383 AAGCCATAAAAGCCTGTCATATTTA 57.104 32.000 0.00 0.00 0.00 1.40
3646 4006 3.626028 ACTTTTCATGCGTTTGTCCTC 57.374 42.857 0.00 0.00 0.00 3.71
3750 4115 8.296713 GCCTGACAAACATATTTCTCAAGTAAA 58.703 33.333 0.00 0.00 0.00 2.01
3760 4125 6.321945 TCATATGCAGCCTGACAAACATATTT 59.678 34.615 0.00 0.00 30.39 1.40
3877 4242 3.184541 CTGCTAATGGAAACTGCAATGC 58.815 45.455 0.00 0.00 33.07 3.56
3923 4288 7.870445 TGACCATTAATTTGTTAGCACTTTTCC 59.130 33.333 0.00 0.00 0.00 3.13
3930 4295 8.458052 CACTGTATGACCATTAATTTGTTAGCA 58.542 33.333 0.00 0.00 0.00 3.49
3939 4305 5.123227 CGAACCCACTGTATGACCATTAAT 58.877 41.667 0.00 0.00 0.00 1.40
3940 4306 4.509616 CGAACCCACTGTATGACCATTAA 58.490 43.478 0.00 0.00 0.00 1.40
4008 4374 4.325119 GCTGATGAAGAGCATATGGATGT 58.675 43.478 4.56 0.00 37.34 3.06
4059 4425 3.760684 GTGGATCTGAAAATGCTCCAGTT 59.239 43.478 0.00 0.00 36.71 3.16
4201 4567 3.674997 CTGTGTACAACCTTACCTGCAT 58.325 45.455 0.00 0.00 0.00 3.96
4296 4662 8.115384 TGGAGAATTTTGGGAAGAAAGATGATA 58.885 33.333 0.00 0.00 0.00 2.15
4302 4668 6.717084 AGTAGTGGAGAATTTTGGGAAGAAAG 59.283 38.462 0.00 0.00 0.00 2.62
4358 4724 6.183361 ACTCTTGCATACCATCTCAATCAGAT 60.183 38.462 0.00 0.00 43.33 2.90
4491 4857 2.821969 CAGTGCCTACTCAGCCAAATTT 59.178 45.455 0.00 0.00 34.07 1.82
4566 4932 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
4567 4933 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4568 4934 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4569 4935 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4570 4936 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4571 4937 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4572 4938 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4573 4939 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4574 4940 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4575 4941 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4576 4942 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4577 4943 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4578 4944 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4579 4945 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4580 4946 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4581 4947 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4582 4948 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4583 4949 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4584 4950 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4585 4951 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4586 4952 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4587 4953 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
4588 4954 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
4589 4955 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
4590 4956 0.389948 TACGCACACACACACACACA 60.390 50.000 0.00 0.00 0.00 3.72
4591 4957 0.722282 TTACGCACACACACACACAC 59.278 50.000 0.00 0.00 0.00 3.82
4606 4972 6.089016 CACAGTCACCTAATTACACAGTTACG 59.911 42.308 0.00 0.00 0.00 3.18
4685 5051 3.004734 AGGAAAGCGTGTGAATTTTCCAG 59.995 43.478 14.98 0.00 46.97 3.86
4721 5087 7.524717 ACAAGTGGCTTGAGTATGTATTTTT 57.475 32.000 14.81 0.00 43.42 1.94
4773 5139 8.435430 GCATTTTGCTTTAACTAGATGTTTTCC 58.565 33.333 0.00 0.00 40.96 3.13
4861 5227 9.407380 TGTAGCATGTTTTATATTCAGGTGAAT 57.593 29.630 10.03 10.03 45.77 2.57
4905 5271 0.252927 AGCTTAGGGCCTGGTCTTCT 60.253 55.000 18.53 1.47 43.05 2.85
4911 5277 1.700042 CCCAGTAGCTTAGGGCCTGG 61.700 65.000 18.53 10.23 44.56 4.45
4915 5281 1.424638 TGATCCCAGTAGCTTAGGGC 58.575 55.000 11.80 1.94 42.52 5.19
4999 5365 6.538021 GTCACAAGATACTCAAGCAGATGAAT 59.462 38.462 0.00 0.00 0.00 2.57
5023 5389 1.380112 GAGGAGCCTGGAGTACCGT 60.380 63.158 0.00 0.00 39.42 4.83
5254 5620 2.033550 CCCTAGCATACTGTCACGAGAC 59.966 54.545 6.00 6.00 45.19 3.36
5260 5626 5.692115 TGAATTTCCCTAGCATACTGTCA 57.308 39.130 0.00 0.00 0.00 3.58
5323 5689 0.390472 CTGCCGAGTTCCTCAAGTCC 60.390 60.000 0.00 0.00 0.00 3.85
5347 5713 0.658536 GCATCGATAAAAGGCTGCGC 60.659 55.000 0.00 0.00 0.00 6.09
5355 5721 5.863965 TCATGGGATACAGCATCGATAAAA 58.136 37.500 0.00 0.00 34.12 1.52
5356 5722 5.482163 TCATGGGATACAGCATCGATAAA 57.518 39.130 0.00 0.00 34.12 1.40
5359 5725 3.262660 ACATCATGGGATACAGCATCGAT 59.737 43.478 0.00 0.00 34.12 3.59
5424 5790 3.664025 CTCGTCGGCCTTGGCATCA 62.664 63.158 14.04 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.