Multiple sequence alignment - TraesCS7A01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G249800 chr7A 100.000 3504 0 0 1 3504 232529735 232526232 0.000000e+00 6471.0
1 TraesCS7A01G249800 chr7A 88.764 534 47 3 64 585 566102930 566103462 2.950000e-180 641.0
2 TraesCS7A01G249800 chr7B 94.698 1886 63 8 722 2588 179533436 179535303 0.000000e+00 2894.0
3 TraesCS7A01G249800 chr7B 89.066 503 50 3 85 585 374527188 374527687 1.380000e-173 619.0
4 TraesCS7A01G249800 chr7B 96.169 261 10 0 2652 2912 179535493 179535753 8.990000e-116 427.0
5 TraesCS7A01G249800 chr3B 90.567 1675 81 14 979 2652 242461027 242462625 0.000000e+00 2146.0
6 TraesCS7A01G249800 chr3B 88.343 1690 96 23 979 2652 242548820 242550424 0.000000e+00 1936.0
7 TraesCS7A01G249800 chr3B 87.191 687 46 12 2723 3383 242462809 242463479 0.000000e+00 743.0
8 TraesCS7A01G249800 chr3B 79.590 1073 163 33 986 2026 166685445 166684397 0.000000e+00 717.0
9 TraesCS7A01G249800 chr3B 95.098 102 4 1 850 951 242460931 242461031 3.620000e-35 159.0
10 TraesCS7A01G249800 chr3B 94.286 105 4 2 847 951 242548722 242548824 3.620000e-35 159.0
11 TraesCS7A01G249800 chr3B 94.737 76 4 0 850 925 242545711 242545786 6.140000e-23 119.0
12 TraesCS7A01G249800 chr3B 90.769 65 3 1 729 793 242548658 242548719 2.240000e-12 84.2
13 TraesCS7A01G249800 chr3B 90.476 63 3 1 729 791 242460872 242460931 2.900000e-11 80.5
14 TraesCS7A01G249800 chr3A 89.477 1682 103 28 734 2371 202828606 202826955 0.000000e+00 2058.0
15 TraesCS7A01G249800 chr3A 90.113 1507 106 11 1175 2652 205709725 205711217 0.000000e+00 1917.0
16 TraesCS7A01G249800 chr3A 86.667 570 51 12 2884 3444 202826162 202825609 2.990000e-170 608.0
17 TraesCS7A01G249800 chr3A 90.537 391 17 7 745 1123 205703666 205704048 1.880000e-137 499.0
18 TraesCS7A01G249800 chr3A 85.819 409 41 9 2652 3046 205714349 205714754 5.410000e-113 418.0
19 TraesCS7A01G249800 chr3A 91.608 286 19 3 2369 2649 202826795 202826510 1.180000e-104 390.0
20 TraesCS7A01G249800 chr3A 90.594 202 14 3 2652 2849 202826360 202826160 2.680000e-66 263.0
21 TraesCS7A01G249800 chr3A 84.483 232 20 9 3174 3402 206046014 206046232 7.620000e-52 215.0
22 TraesCS7A01G249800 chr3A 88.596 114 13 0 3062 3175 205714870 205714983 4.720000e-29 139.0
23 TraesCS7A01G249800 chr7D 94.582 1329 49 8 720 2046 219916952 219915645 0.000000e+00 2034.0
24 TraesCS7A01G249800 chr7D 93.410 865 35 7 2652 3504 219899903 219899049 0.000000e+00 1262.0
25 TraesCS7A01G249800 chr7D 89.800 500 39 4 1 500 147564204 147564691 6.380000e-177 630.0
26 TraesCS7A01G249800 chr7D 91.455 433 24 5 1 433 285471608 285471189 1.810000e-162 582.0
27 TraesCS7A01G249800 chr7D 95.192 312 15 0 2052 2363 219905178 219904867 8.740000e-136 494.0
28 TraesCS7A01G249800 chr7D 94.139 273 15 1 2381 2652 219900327 219900055 7.000000e-112 414.0
29 TraesCS7A01G249800 chr7D 89.691 97 9 1 594 689 186824327 186824423 4.750000e-24 122.0
30 TraesCS7A01G249800 chr7D 88.660 97 10 1 594 689 494611050 494610954 2.210000e-22 117.0
31 TraesCS7A01G249800 chr3D 91.011 1424 61 23 901 2307 167034594 167035967 0.000000e+00 1858.0
32 TraesCS7A01G249800 chr3D 91.858 958 54 9 729 1674 166930318 166931263 0.000000e+00 1315.0
33 TraesCS7A01G249800 chr3D 92.720 522 32 3 1670 2191 166937625 166938140 0.000000e+00 749.0
34 TraesCS7A01G249800 chr3D 91.610 441 37 0 60 500 1194156 1194596 8.320000e-171 610.0
35 TraesCS7A01G249800 chr3D 84.524 504 53 15 2860 3345 166939776 166940272 3.160000e-130 475.0
36 TraesCS7A01G249800 chr3D 84.528 265 28 9 3021 3273 167049228 167049491 2.090000e-62 250.0
37 TraesCS7A01G249800 chr3D 80.734 218 34 6 2663 2874 166938296 166938511 2.800000e-36 163.0
38 TraesCS7A01G249800 chr6D 85.199 1108 92 28 1560 2652 123025540 123026590 0.000000e+00 1072.0
39 TraesCS7A01G249800 chr6D 89.983 589 46 5 10 597 450503695 450503119 0.000000e+00 749.0
40 TraesCS7A01G249800 chr6D 89.583 96 10 0 594 689 143372131 143372036 4.750000e-24 122.0
41 TraesCS7A01G249800 chr2D 89.744 585 31 15 1 585 13903051 13902496 0.000000e+00 721.0
42 TraesCS7A01G249800 chr2D 87.209 602 39 12 1 585 143234665 143235245 0.000000e+00 651.0
43 TraesCS7A01G249800 chr2D 90.722 97 8 1 594 689 591306484 591306580 1.020000e-25 128.0
44 TraesCS7A01G249800 chr2D 89.474 95 9 1 594 687 607703221 607703127 6.140000e-23 119.0
45 TraesCS7A01G249800 chr5A 93.238 488 30 3 99 585 51739491 51739976 0.000000e+00 715.0
46 TraesCS7A01G249800 chr4D 91.082 527 44 2 60 585 401068161 401068685 0.000000e+00 710.0
47 TraesCS7A01G249800 chr4D 89.691 97 9 1 594 689 377836914 377837010 4.750000e-24 122.0
48 TraesCS7A01G249800 chr2A 89.094 541 28 5 60 584 717950978 717951503 0.000000e+00 643.0
49 TraesCS7A01G249800 chr6B 86.145 498 54 5 3 500 244342135 244342617 1.110000e-144 523.0
50 TraesCS7A01G249800 chr6B 95.833 72 2 1 1063 1134 216635314 216635384 7.950000e-22 115.0
51 TraesCS7A01G249800 chr4B 81.198 601 49 23 1 585 481630566 481631118 3.230000e-115 425.0
52 TraesCS7A01G249800 chrUn 89.971 339 13 5 979 1316 477602057 477602375 5.410000e-113 418.0
53 TraesCS7A01G249800 chrUn 95.918 98 3 1 854 951 477601965 477602061 1.300000e-34 158.0
54 TraesCS7A01G249800 chr1D 86.911 191 13 3 1 191 429595252 429595430 1.650000e-48 204.0
55 TraesCS7A01G249800 chr1D 89.691 97 9 1 594 689 45395468 45395372 4.750000e-24 122.0
56 TraesCS7A01G249800 chr2B 88.182 110 11 2 581 689 763895773 763895665 2.840000e-26 130.0
57 TraesCS7A01G249800 chr5D 89.691 97 9 1 594 689 538364445 538364349 4.750000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G249800 chr7A 232526232 232529735 3503 True 6471.000000 6471 100.000000 1 3504 1 chr7A.!!$R1 3503
1 TraesCS7A01G249800 chr7A 566102930 566103462 532 False 641.000000 641 88.764000 64 585 1 chr7A.!!$F1 521
2 TraesCS7A01G249800 chr7B 179533436 179535753 2317 False 1660.500000 2894 95.433500 722 2912 2 chr7B.!!$F2 2190
3 TraesCS7A01G249800 chr3B 242460872 242463479 2607 False 782.125000 2146 90.833000 729 3383 4 chr3B.!!$F1 2654
4 TraesCS7A01G249800 chr3B 166684397 166685445 1048 True 717.000000 717 79.590000 986 2026 1 chr3B.!!$R1 1040
5 TraesCS7A01G249800 chr3B 242545711 242550424 4713 False 574.550000 1936 92.033750 729 2652 4 chr3B.!!$F2 1923
6 TraesCS7A01G249800 chr3A 202825609 202828606 2997 True 829.750000 2058 89.586500 734 3444 4 chr3A.!!$R1 2710
7 TraesCS7A01G249800 chr3A 205709725 205714983 5258 False 824.666667 1917 88.176000 1175 3175 3 chr3A.!!$F3 2000
8 TraesCS7A01G249800 chr7D 219915645 219916952 1307 True 2034.000000 2034 94.582000 720 2046 1 chr7D.!!$R2 1326
9 TraesCS7A01G249800 chr7D 219899049 219900327 1278 True 838.000000 1262 93.774500 2381 3504 2 chr7D.!!$R5 1123
10 TraesCS7A01G249800 chr3D 167034594 167035967 1373 False 1858.000000 1858 91.011000 901 2307 1 chr3D.!!$F3 1406
11 TraesCS7A01G249800 chr3D 166930318 166931263 945 False 1315.000000 1315 91.858000 729 1674 1 chr3D.!!$F2 945
12 TraesCS7A01G249800 chr3D 166937625 166940272 2647 False 462.333333 749 85.992667 1670 3345 3 chr3D.!!$F5 1675
13 TraesCS7A01G249800 chr6D 123025540 123026590 1050 False 1072.000000 1072 85.199000 1560 2652 1 chr6D.!!$F1 1092
14 TraesCS7A01G249800 chr6D 450503119 450503695 576 True 749.000000 749 89.983000 10 597 1 chr6D.!!$R2 587
15 TraesCS7A01G249800 chr2D 13902496 13903051 555 True 721.000000 721 89.744000 1 585 1 chr2D.!!$R1 584
16 TraesCS7A01G249800 chr2D 143234665 143235245 580 False 651.000000 651 87.209000 1 585 1 chr2D.!!$F1 584
17 TraesCS7A01G249800 chr4D 401068161 401068685 524 False 710.000000 710 91.082000 60 585 1 chr4D.!!$F2 525
18 TraesCS7A01G249800 chr2A 717950978 717951503 525 False 643.000000 643 89.094000 60 584 1 chr2A.!!$F1 524
19 TraesCS7A01G249800 chr4B 481630566 481631118 552 False 425.000000 425 81.198000 1 585 1 chr4B.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 655 0.033503 TACGGGCTCTGGTCTGATCA 60.034 55.0 0.00 0.0 0.00 2.92 F
626 657 0.250234 CGGGCTCTGGTCTGATCAAA 59.750 55.0 0.00 0.0 0.00 2.69 F
718 749 0.533032 GGTCGGCTAGAGTTGCTCTT 59.467 55.0 3.87 0.0 41.50 2.85 F
1745 4040 0.175760 CTGGCGAGAGGATTTTCCGA 59.824 55.0 0.00 0.0 42.75 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 4022 0.175760 CTCGGAAAATCCTCTCGCCA 59.824 55.0 0.00 0.0 33.30 5.69 R
1745 4040 0.249657 GAGAGATGAATTCGGCGGCT 60.250 55.0 7.21 0.0 0.00 5.52 R
2123 4451 1.919240 TGGCCGTGACTCTCTTTCTA 58.081 50.0 0.00 0.0 0.00 2.10 R
3147 10408 1.734388 AACCAACTTGGCACCTTCGC 61.734 55.0 7.81 0.0 42.67 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.803289 CGGCGATCAGTCAGAGTCA 59.197 57.895 0.00 0.00 0.00 3.41
51 52 1.065401 GGCGATCAGTCAGAGTCAGAG 59.935 57.143 0.00 0.00 0.00 3.35
52 53 1.065401 GCGATCAGTCAGAGTCAGAGG 59.935 57.143 0.00 0.00 0.00 3.69
53 54 2.637947 CGATCAGTCAGAGTCAGAGGA 58.362 52.381 0.00 0.00 0.00 3.71
54 55 2.613595 CGATCAGTCAGAGTCAGAGGAG 59.386 54.545 0.00 0.00 0.00 3.69
55 56 3.620488 GATCAGTCAGAGTCAGAGGAGT 58.380 50.000 0.00 0.00 0.00 3.85
56 57 3.066291 TCAGTCAGAGTCAGAGGAGTC 57.934 52.381 0.00 0.00 42.71 3.36
57 58 1.737236 CAGTCAGAGTCAGAGGAGTCG 59.263 57.143 0.00 0.00 46.18 4.18
176 177 2.348888 GGCCCGTCTCGAGGAAGAA 61.349 63.158 13.56 0.00 0.00 2.52
186 187 0.248134 CGAGGAAGAACCGCTCGTAG 60.248 60.000 0.00 0.00 44.74 3.51
332 363 4.154347 CACGGCCTCCTCCAGCTC 62.154 72.222 0.00 0.00 0.00 4.09
336 367 3.160748 GCCTCCTCCAGCTCCCTC 61.161 72.222 0.00 0.00 0.00 4.30
337 368 2.695597 CCTCCTCCAGCTCCCTCT 59.304 66.667 0.00 0.00 0.00 3.69
339 370 1.048160 CCTCCTCCAGCTCCCTCTTC 61.048 65.000 0.00 0.00 0.00 2.87
340 371 0.325110 CTCCTCCAGCTCCCTCTTCA 60.325 60.000 0.00 0.00 0.00 3.02
341 372 0.616111 TCCTCCAGCTCCCTCTTCAC 60.616 60.000 0.00 0.00 0.00 3.18
343 374 1.954362 CTCCAGCTCCCTCTTCACCG 61.954 65.000 0.00 0.00 0.00 4.94
344 375 2.581354 CAGCTCCCTCTTCACCGG 59.419 66.667 0.00 0.00 0.00 5.28
345 376 1.984570 CAGCTCCCTCTTCACCGGA 60.985 63.158 9.46 0.00 0.00 5.14
346 377 1.229209 AGCTCCCTCTTCACCGGAA 60.229 57.895 9.46 0.00 0.00 4.30
376 407 4.889856 TCGATGCGCCCGTGGATG 62.890 66.667 16.81 0.00 0.00 3.51
377 408 4.889856 CGATGCGCCCGTGGATGA 62.890 66.667 4.18 0.00 0.00 2.92
378 409 2.969238 GATGCGCCCGTGGATGAG 60.969 66.667 4.18 0.00 0.00 2.90
384 415 4.489771 CCCGTGGATGAGCACCCC 62.490 72.222 0.00 0.00 0.00 4.95
385 416 4.838152 CCGTGGATGAGCACCCCG 62.838 72.222 0.00 0.00 0.00 5.73
410 441 2.122167 CGTAGCCGGAAGAGCTCCT 61.122 63.158 10.93 0.00 42.85 3.69
411 442 1.737201 GTAGCCGGAAGAGCTCCTC 59.263 63.158 10.93 7.00 42.85 3.71
412 443 1.824329 TAGCCGGAAGAGCTCCTCG 60.824 63.158 10.93 11.73 42.85 4.63
413 444 4.882396 GCCGGAAGAGCTCCTCGC 62.882 72.222 10.93 3.16 42.85 5.03
414 445 4.560856 CCGGAAGAGCTCCTCGCG 62.561 72.222 10.93 12.41 42.85 5.87
415 446 4.560856 CGGAAGAGCTCCTCGCGG 62.561 72.222 10.93 0.00 42.85 6.46
417 448 2.103340 GAAGAGCTCCTCGCGGAC 59.897 66.667 10.93 0.00 45.59 4.79
418 449 3.418744 GAAGAGCTCCTCGCGGACC 62.419 68.421 10.93 0.00 45.59 4.46
419 450 4.742649 AGAGCTCCTCGCGGACCA 62.743 66.667 10.93 0.00 45.59 4.02
420 451 4.200283 GAGCTCCTCGCGGACCAG 62.200 72.222 6.13 0.00 45.59 4.00
422 453 4.070552 GCTCCTCGCGGACCAGTT 62.071 66.667 6.13 0.00 34.92 3.16
423 454 2.125912 CTCCTCGCGGACCAGTTG 60.126 66.667 6.13 0.00 34.92 3.16
424 455 4.373116 TCCTCGCGGACCAGTTGC 62.373 66.667 6.13 0.00 33.30 4.17
474 505 2.354802 GAGCTCGAACTCGTCAAGC 58.645 57.895 0.00 3.76 40.80 4.01
475 506 0.109504 GAGCTCGAACTCGTCAAGCT 60.110 55.000 12.09 12.09 45.55 3.74
476 507 0.109504 AGCTCGAACTCGTCAAGCTC 60.110 55.000 7.71 0.00 41.25 4.09
477 508 1.399504 GCTCGAACTCGTCAAGCTCG 61.400 60.000 0.00 0.00 43.42 5.03
479 510 2.768920 CGAACTCGTCAAGCTCGCG 61.769 63.158 0.00 0.00 36.84 5.87
480 511 3.060663 GAACTCGTCAAGCTCGCGC 62.061 63.158 0.00 0.00 0.00 6.86
488 519 4.980805 AAGCTCGCGCCGGTTGAA 62.981 61.111 1.90 0.00 36.60 2.69
489 520 4.760047 AGCTCGCGCCGGTTGAAT 62.760 61.111 1.90 0.00 36.60 2.57
490 521 4.520846 GCTCGCGCCGGTTGAATG 62.521 66.667 1.90 0.00 0.00 2.67
491 522 4.520846 CTCGCGCCGGTTGAATGC 62.521 66.667 1.90 0.00 0.00 3.56
519 550 3.490890 GAGCATCGTGGTTGAGCC 58.509 61.111 0.00 0.00 37.90 4.70
520 551 1.375908 GAGCATCGTGGTTGAGCCA 60.376 57.895 0.00 0.00 46.95 4.75
527 558 4.980805 TGGTTGAGCCACCGACGC 62.981 66.667 0.00 0.00 43.61 5.19
565 596 4.899239 GTCAGATCTGGCGGGGCG 62.899 72.222 22.42 0.00 0.00 6.13
567 598 4.899239 CAGATCTGGCGGGGCGAC 62.899 72.222 15.38 0.00 34.27 5.19
586 617 1.007154 GGCGCTCCGTCTTATCCTC 60.007 63.158 7.64 0.00 0.00 3.71
587 618 1.734137 GCGCTCCGTCTTATCCTCA 59.266 57.895 0.00 0.00 0.00 3.86
588 619 0.102481 GCGCTCCGTCTTATCCTCAA 59.898 55.000 0.00 0.00 0.00 3.02
589 620 1.866063 GCGCTCCGTCTTATCCTCAAG 60.866 57.143 0.00 0.00 0.00 3.02
591 622 2.796383 CGCTCCGTCTTATCCTCAAGTG 60.796 54.545 0.00 0.00 0.00 3.16
592 623 2.427453 GCTCCGTCTTATCCTCAAGTGA 59.573 50.000 0.00 0.00 0.00 3.41
597 628 3.736433 CGTCTTATCCTCAAGTGAGCCAG 60.736 52.174 2.59 0.00 40.75 4.85
598 629 3.449018 GTCTTATCCTCAAGTGAGCCAGA 59.551 47.826 2.59 0.00 40.75 3.86
599 630 3.449018 TCTTATCCTCAAGTGAGCCAGAC 59.551 47.826 2.59 0.00 40.75 3.51
600 631 1.649321 ATCCTCAAGTGAGCCAGACA 58.351 50.000 2.59 0.00 40.75 3.41
601 632 0.681733 TCCTCAAGTGAGCCAGACAC 59.318 55.000 2.59 0.00 40.75 3.67
602 633 0.321122 CCTCAAGTGAGCCAGACACC 60.321 60.000 2.59 0.00 40.75 4.16
603 634 0.668706 CTCAAGTGAGCCAGACACCG 60.669 60.000 0.00 0.00 38.82 4.94
604 635 1.112916 TCAAGTGAGCCAGACACCGA 61.113 55.000 0.00 0.00 38.82 4.69
606 637 1.204704 CAAGTGAGCCAGACACCGATA 59.795 52.381 0.00 0.00 38.82 2.92
607 638 0.818296 AGTGAGCCAGACACCGATAC 59.182 55.000 0.00 0.00 38.82 2.24
608 639 0.525668 GTGAGCCAGACACCGATACG 60.526 60.000 0.00 0.00 32.84 3.06
618 649 2.728817 CCGATACGGGCTCTGGTC 59.271 66.667 2.00 0.00 44.15 4.02
620 651 1.360551 CGATACGGGCTCTGGTCTG 59.639 63.158 0.00 0.00 0.00 3.51
622 653 1.333177 GATACGGGCTCTGGTCTGAT 58.667 55.000 0.00 0.00 0.00 2.90
623 654 1.271102 GATACGGGCTCTGGTCTGATC 59.729 57.143 0.00 0.00 0.00 2.92
624 655 0.033503 TACGGGCTCTGGTCTGATCA 60.034 55.000 0.00 0.00 0.00 2.92
625 656 0.904865 ACGGGCTCTGGTCTGATCAA 60.905 55.000 0.00 0.00 0.00 2.57
626 657 0.250234 CGGGCTCTGGTCTGATCAAA 59.750 55.000 0.00 0.00 0.00 2.69
627 658 1.339055 CGGGCTCTGGTCTGATCAAAA 60.339 52.381 0.00 0.00 0.00 2.44
652 683 6.963049 AATAAATCGAGCCCGTATAATCAC 57.037 37.500 0.00 0.00 37.05 3.06
653 684 3.314541 AATCGAGCCCGTATAATCACC 57.685 47.619 0.00 0.00 37.05 4.02
656 687 0.963962 GAGCCCGTATAATCACCGGA 59.036 55.000 9.46 0.00 44.41 5.14
657 688 1.342174 GAGCCCGTATAATCACCGGAA 59.658 52.381 9.46 0.00 44.41 4.30
658 689 1.975680 AGCCCGTATAATCACCGGAAT 59.024 47.619 9.46 0.00 44.41 3.01
659 690 2.370849 AGCCCGTATAATCACCGGAATT 59.629 45.455 9.46 10.35 44.41 2.17
660 691 3.579586 AGCCCGTATAATCACCGGAATTA 59.420 43.478 9.46 12.39 44.41 1.40
661 692 4.224370 AGCCCGTATAATCACCGGAATTAT 59.776 41.667 21.87 21.87 44.41 1.28
662 693 4.331717 GCCCGTATAATCACCGGAATTATG 59.668 45.833 24.55 15.04 44.41 1.90
663 694 4.331717 CCCGTATAATCACCGGAATTATGC 59.668 45.833 24.55 22.76 44.41 3.14
664 695 4.032445 CCGTATAATCACCGGAATTATGCG 59.968 45.833 31.91 31.91 44.41 4.73
671 702 3.250220 CGGAATTATGCGGGTTTGC 57.750 52.632 0.00 0.00 36.66 3.68
672 703 0.591236 CGGAATTATGCGGGTTTGCG 60.591 55.000 0.00 0.00 36.66 4.85
673 704 0.869880 GGAATTATGCGGGTTTGCGC 60.870 55.000 0.00 0.00 37.81 6.09
674 705 0.869880 GAATTATGCGGGTTTGCGCC 60.870 55.000 4.18 0.00 37.81 6.53
708 739 4.647615 CGGATGCGGGTCGGCTAG 62.648 72.222 0.00 0.00 0.00 3.42
709 740 3.224324 GGATGCGGGTCGGCTAGA 61.224 66.667 0.00 0.00 0.00 2.43
710 741 2.336809 GATGCGGGTCGGCTAGAG 59.663 66.667 0.00 0.00 0.00 2.43
711 742 2.442272 ATGCGGGTCGGCTAGAGT 60.442 61.111 0.00 0.00 0.00 3.24
712 743 2.017559 GATGCGGGTCGGCTAGAGTT 62.018 60.000 0.00 0.00 0.00 3.01
713 744 2.202756 GCGGGTCGGCTAGAGTTG 60.203 66.667 0.00 0.00 0.00 3.16
714 745 2.202756 CGGGTCGGCTAGAGTTGC 60.203 66.667 0.00 0.00 0.00 4.17
715 746 2.711922 CGGGTCGGCTAGAGTTGCT 61.712 63.158 0.00 0.00 0.00 3.91
716 747 1.142097 GGGTCGGCTAGAGTTGCTC 59.858 63.158 0.00 0.00 0.00 4.26
717 748 1.324005 GGGTCGGCTAGAGTTGCTCT 61.324 60.000 4.02 4.02 43.83 4.09
718 749 0.533032 GGTCGGCTAGAGTTGCTCTT 59.467 55.000 3.87 0.00 41.50 2.85
732 763 5.902681 AGTTGCTCTTAGTATGTGCGATAA 58.097 37.500 4.01 0.00 0.00 1.75
737 2957 5.177511 GCTCTTAGTATGTGCGATAATTGCA 59.822 40.000 0.00 0.00 40.70 4.08
777 2998 1.933853 GTCGGAATCGGATTGGAACAG 59.066 52.381 8.18 0.00 36.87 3.16
778 2999 1.828595 TCGGAATCGGATTGGAACAGA 59.171 47.619 8.18 0.00 36.87 3.41
779 3000 2.159099 TCGGAATCGGATTGGAACAGAG 60.159 50.000 8.18 0.00 36.87 3.35
1024 3270 4.569023 TTCAGCGCGCCGATCGAT 62.569 61.111 30.33 3.60 41.67 3.59
1025 3271 4.982795 TCAGCGCGCCGATCGATC 62.983 66.667 30.33 15.68 41.67 3.69
1700 3995 1.154450 CGTCGACACGTGGTCTCTC 60.154 63.158 21.57 6.77 44.68 3.20
1727 4022 1.134461 GTCATGGCAGAGATGCTCACT 60.134 52.381 0.00 0.00 32.06 3.41
1745 4040 0.175760 CTGGCGAGAGGATTTTCCGA 59.824 55.000 0.00 0.00 42.75 4.55
1961 4267 1.883275 CTTACATGCAACCCCGACAAA 59.117 47.619 0.00 0.00 0.00 2.83
2040 4359 2.125350 GCCCTTCTGCTCCGACTG 60.125 66.667 0.00 0.00 0.00 3.51
2043 4362 1.447489 CCTTCTGCTCCGACTGCTG 60.447 63.158 0.00 0.00 0.00 4.41
2123 4451 2.586792 GCTCCGTTGATGCCTCCT 59.413 61.111 0.00 0.00 0.00 3.69
2233 4613 1.078214 TTCTGCCTCGATGCTTGGG 60.078 57.895 13.93 0.00 0.00 4.12
2257 4637 6.912591 GGACTTTTCGGATGCAAAATATGTAG 59.087 38.462 0.00 0.00 0.00 2.74
2315 4696 4.934602 AGTAAATTGTCTCTGCTCAAGCTC 59.065 41.667 3.32 0.00 42.66 4.09
2317 4698 0.961753 TTGTCTCTGCTCAAGCTCGA 59.038 50.000 3.32 0.00 42.66 4.04
2363 4755 3.217599 TGCGTTGCAGTGTTTGTTTTA 57.782 38.095 0.00 0.00 33.32 1.52
2391 4945 8.623903 CCTGTAATATGTAGTGTTCAATGCAAT 58.376 33.333 0.00 0.00 0.00 3.56
2450 5012 6.479660 GTGAAATTGGAAGTTCTTGAAATGCA 59.520 34.615 2.25 0.00 34.37 3.96
2491 5055 5.666969 TGTTACGACCATTGAGAAACTTG 57.333 39.130 0.00 0.00 0.00 3.16
2492 5056 5.120399 TGTTACGACCATTGAGAAACTTGT 58.880 37.500 0.00 0.00 0.00 3.16
2531 5099 8.539544 TGGTTCTCTCATGTCTGATTTATGTTA 58.460 33.333 0.00 0.00 0.00 2.41
2720 8553 5.827797 ACCAATTCACATGTGTGTAACTTCT 59.172 36.000 24.63 0.00 45.76 2.85
2849 8701 5.471116 TCTGTCTGGAACACATGAATTTCAG 59.529 40.000 12.98 12.98 33.24 3.02
2914 10047 2.042162 AGGATCAGTTTTGTCCATGCCT 59.958 45.455 0.00 0.00 34.42 4.75
2926 10059 1.344114 TCCATGCCTTTTCTTGCAACC 59.656 47.619 0.00 0.00 41.50 3.77
2933 10066 6.603940 TGCCTTTTCTTGCAACCTAATTAT 57.396 33.333 0.00 0.00 33.87 1.28
2934 10067 7.003402 TGCCTTTTCTTGCAACCTAATTATT 57.997 32.000 0.00 0.00 33.87 1.40
2935 10068 7.449247 TGCCTTTTCTTGCAACCTAATTATTT 58.551 30.769 0.00 0.00 33.87 1.40
2936 10069 7.936301 TGCCTTTTCTTGCAACCTAATTATTTT 59.064 29.630 0.00 0.00 33.87 1.82
2937 10070 8.443160 GCCTTTTCTTGCAACCTAATTATTTTC 58.557 33.333 0.00 0.00 0.00 2.29
2938 10071 9.710900 CCTTTTCTTGCAACCTAATTATTTTCT 57.289 29.630 0.00 0.00 0.00 2.52
3147 10408 5.997746 TGAAAGGGTAGATGACTTCAAACTG 59.002 40.000 0.00 0.00 0.00 3.16
3163 10424 1.283793 CTGCGAAGGTGCCAAGTTG 59.716 57.895 0.00 0.00 0.00 3.16
3309 10583 1.411612 GGGTCACCTAACATCTACCCG 59.588 57.143 0.00 0.00 37.41 5.28
3339 10613 3.921677 TGAACACCGAGAAGAACATACC 58.078 45.455 0.00 0.00 0.00 2.73
3340 10614 3.259902 GAACACCGAGAAGAACATACCC 58.740 50.000 0.00 0.00 0.00 3.69
3341 10615 2.537143 ACACCGAGAAGAACATACCCT 58.463 47.619 0.00 0.00 0.00 4.34
3342 10616 2.904434 ACACCGAGAAGAACATACCCTT 59.096 45.455 0.00 0.00 0.00 3.95
3343 10617 3.262420 CACCGAGAAGAACATACCCTTG 58.738 50.000 0.00 0.00 0.00 3.61
3344 10618 3.056107 CACCGAGAAGAACATACCCTTGA 60.056 47.826 0.00 0.00 0.00 3.02
3345 10619 3.581332 ACCGAGAAGAACATACCCTTGAA 59.419 43.478 0.00 0.00 0.00 2.69
3346 10620 4.225267 ACCGAGAAGAACATACCCTTGAAT 59.775 41.667 0.00 0.00 0.00 2.57
3407 10681 6.183360 GGTTAAGAGGAAAAACCAAACATCCA 60.183 38.462 0.00 0.00 41.89 3.41
3441 10716 8.674263 AATAGTATGCTCTTCAGAATTGGAAG 57.326 34.615 9.25 9.25 42.42 3.46
3445 10720 4.579869 TGCTCTTCAGAATTGGAAGTACC 58.420 43.478 13.37 0.00 41.88 3.34
3448 10723 4.579869 TCTTCAGAATTGGAAGTACCTGC 58.420 43.478 13.37 0.00 41.88 4.85
3457 10732 1.073284 GGAAGTACCTGCAGGACCAAA 59.927 52.381 39.19 15.22 38.94 3.28
3497 10774 1.933247 CTCGAAAAGAGGCTAGCCAG 58.067 55.000 34.70 17.06 43.20 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.988832 ACTCCGACTCCTCTGACTCT 59.011 55.000 0.00 0.00 0.00 3.24
48 49 1.487558 GACTCCTACTCCGACTCCTCT 59.512 57.143 0.00 0.00 0.00 3.69
51 52 0.814812 CCGACTCCTACTCCGACTCC 60.815 65.000 0.00 0.00 0.00 3.85
52 53 0.177604 TCCGACTCCTACTCCGACTC 59.822 60.000 0.00 0.00 0.00 3.36
53 54 0.178533 CTCCGACTCCTACTCCGACT 59.821 60.000 0.00 0.00 0.00 4.18
54 55 0.107752 ACTCCGACTCCTACTCCGAC 60.108 60.000 0.00 0.00 0.00 4.79
55 56 0.177604 GACTCCGACTCCTACTCCGA 59.822 60.000 0.00 0.00 0.00 4.55
56 57 1.152989 CGACTCCGACTCCTACTCCG 61.153 65.000 0.00 0.00 38.22 4.63
57 58 0.177604 TCGACTCCGACTCCTACTCC 59.822 60.000 0.00 0.00 40.30 3.85
330 361 1.215647 CGTTCCGGTGAAGAGGGAG 59.784 63.158 0.00 0.00 0.00 4.30
331 362 1.228644 TCGTTCCGGTGAAGAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
332 363 1.215647 CTCGTTCCGGTGAAGAGGG 59.784 63.158 0.00 0.00 0.00 4.30
333 364 1.446272 GCTCGTTCCGGTGAAGAGG 60.446 63.158 18.81 6.95 31.72 3.69
334 365 1.446272 GGCTCGTTCCGGTGAAGAG 60.446 63.158 15.17 15.17 33.01 2.85
336 367 2.809601 CGGCTCGTTCCGGTGAAG 60.810 66.667 0.00 0.00 45.38 3.02
358 389 4.592192 ATCCACGGGCGCATCGAG 62.592 66.667 24.99 18.07 0.00 4.04
360 391 4.889856 TCATCCACGGGCGCATCG 62.890 66.667 18.41 18.41 0.00 3.84
361 392 2.969238 CTCATCCACGGGCGCATC 60.969 66.667 10.83 0.00 0.00 3.91
367 398 4.489771 GGGGTGCTCATCCACGGG 62.490 72.222 1.16 0.00 36.59 5.28
368 399 4.838152 CGGGGTGCTCATCCACGG 62.838 72.222 1.16 0.00 46.60 4.94
392 423 2.413765 GGAGCTCTTCCGGCTACG 59.586 66.667 14.64 0.00 40.40 3.51
413 444 4.760047 CCTCCGGCAACTGGTCCG 62.760 72.222 0.00 0.00 44.89 4.79
414 445 3.316573 CTCCTCCGGCAACTGGTCC 62.317 68.421 0.00 0.00 0.00 4.46
415 446 2.266055 CTCCTCCGGCAACTGGTC 59.734 66.667 0.00 0.00 0.00 4.02
462 493 3.065015 CGCGAGCTTGACGAGTTC 58.935 61.111 4.70 0.00 32.73 3.01
474 505 4.520846 GCATTCAACCGGCGCGAG 62.521 66.667 12.10 1.76 0.00 5.03
501 532 2.456119 GGCTCAACCACGATGCTCG 61.456 63.158 0.00 4.36 46.93 5.03
502 533 1.375908 TGGCTCAACCACGATGCTC 60.376 57.895 0.00 0.00 46.36 4.26
503 534 2.749682 TGGCTCAACCACGATGCT 59.250 55.556 0.00 0.00 46.36 3.79
545 576 4.899239 CCCGCCAGATCTGACGCC 62.899 72.222 24.10 8.81 35.12 5.68
547 578 4.899239 GCCCCGCCAGATCTGACG 62.899 72.222 24.62 23.65 36.21 4.35
548 579 4.899239 CGCCCCGCCAGATCTGAC 62.899 72.222 24.62 12.06 0.00 3.51
550 581 4.899239 GTCGCCCCGCCAGATCTG 62.899 72.222 16.24 16.24 0.00 2.90
568 599 1.007154 GAGGATAAGACGGAGCGCC 60.007 63.158 2.29 0.00 0.00 6.53
569 600 0.102481 TTGAGGATAAGACGGAGCGC 59.898 55.000 0.00 0.00 0.00 5.92
571 602 2.427453 TCACTTGAGGATAAGACGGAGC 59.573 50.000 0.00 0.00 0.00 4.70
572 603 3.490078 GCTCACTTGAGGATAAGACGGAG 60.490 52.174 8.32 0.00 42.29 4.63
573 604 2.427453 GCTCACTTGAGGATAAGACGGA 59.573 50.000 8.32 0.00 42.29 4.69
574 605 2.482142 GGCTCACTTGAGGATAAGACGG 60.482 54.545 8.32 0.00 42.29 4.79
577 608 3.449018 GTCTGGCTCACTTGAGGATAAGA 59.551 47.826 8.32 0.00 42.29 2.10
579 610 3.055819 GTGTCTGGCTCACTTGAGGATAA 60.056 47.826 8.32 0.00 42.29 1.75
581 612 1.277557 GTGTCTGGCTCACTTGAGGAT 59.722 52.381 8.32 0.00 42.29 3.24
583 614 0.321122 GGTGTCTGGCTCACTTGAGG 60.321 60.000 8.32 0.00 42.29 3.86
584 615 0.668706 CGGTGTCTGGCTCACTTGAG 60.669 60.000 1.56 1.56 44.75 3.02
586 617 0.036952 ATCGGTGTCTGGCTCACTTG 60.037 55.000 7.62 2.97 36.25 3.16
587 618 1.204941 GTATCGGTGTCTGGCTCACTT 59.795 52.381 7.62 0.00 36.25 3.16
588 619 0.818296 GTATCGGTGTCTGGCTCACT 59.182 55.000 7.62 0.00 36.25 3.41
589 620 0.525668 CGTATCGGTGTCTGGCTCAC 60.526 60.000 0.00 0.00 35.36 3.51
591 622 1.065928 CCGTATCGGTGTCTGGCTC 59.934 63.158 0.00 0.00 42.73 4.70
592 623 2.423898 CCCGTATCGGTGTCTGGCT 61.424 63.158 7.40 0.00 46.80 4.75
597 628 1.065928 CAGAGCCCGTATCGGTGTC 59.934 63.158 7.40 3.68 46.80 3.67
598 629 2.423898 CCAGAGCCCGTATCGGTGT 61.424 63.158 7.40 0.00 46.80 4.16
599 630 2.351336 GACCAGAGCCCGTATCGGTG 62.351 65.000 7.40 0.00 46.80 4.94
600 631 2.043248 ACCAGAGCCCGTATCGGT 60.043 61.111 7.40 0.00 46.80 4.69
602 633 1.101635 TCAGACCAGAGCCCGTATCG 61.102 60.000 0.00 0.00 0.00 2.92
603 634 1.271102 GATCAGACCAGAGCCCGTATC 59.729 57.143 0.00 0.00 0.00 2.24
604 635 1.333177 GATCAGACCAGAGCCCGTAT 58.667 55.000 0.00 0.00 0.00 3.06
606 637 0.904865 TTGATCAGACCAGAGCCCGT 60.905 55.000 0.00 0.00 0.00 5.28
607 638 0.250234 TTTGATCAGACCAGAGCCCG 59.750 55.000 0.00 0.00 0.00 6.13
608 639 2.496899 TTTTGATCAGACCAGAGCCC 57.503 50.000 0.00 0.00 0.00 5.19
626 657 8.287503 GTGATTATACGGGCTCGATTTATTTTT 58.712 33.333 15.95 0.00 40.11 1.94
627 658 7.094933 GGTGATTATACGGGCTCGATTTATTTT 60.095 37.037 15.95 0.00 40.11 1.82
631 662 4.616604 CGGTGATTATACGGGCTCGATTTA 60.617 45.833 15.95 0.00 40.11 1.40
632 663 3.660865 GGTGATTATACGGGCTCGATTT 58.339 45.455 15.95 0.00 40.11 2.17
633 664 2.352421 CGGTGATTATACGGGCTCGATT 60.352 50.000 15.95 0.81 40.11 3.34
635 666 0.594602 CGGTGATTATACGGGCTCGA 59.405 55.000 15.95 0.00 40.11 4.04
636 667 0.388134 CCGGTGATTATACGGGCTCG 60.388 60.000 3.27 3.27 43.69 5.03
637 668 3.509388 CCGGTGATTATACGGGCTC 57.491 57.895 0.00 0.00 43.69 4.70
642 673 4.032445 CCGCATAATTCCGGTGATTATACG 59.968 45.833 23.79 23.79 39.67 3.06
643 674 4.331717 CCCGCATAATTCCGGTGATTATAC 59.668 45.833 18.71 14.65 42.87 1.47
644 675 4.020039 ACCCGCATAATTCCGGTGATTATA 60.020 41.667 18.71 3.16 42.87 0.98
645 676 3.244770 ACCCGCATAATTCCGGTGATTAT 60.245 43.478 15.47 15.47 42.87 1.28
650 681 1.099689 AAACCCGCATAATTCCGGTG 58.900 50.000 0.00 0.00 42.87 4.94
652 683 0.248866 GCAAACCCGCATAATTCCGG 60.249 55.000 0.00 0.00 43.97 5.14
653 684 0.591236 CGCAAACCCGCATAATTCCG 60.591 55.000 0.00 0.00 0.00 4.30
691 722 4.647615 CTAGCCGACCCGCATCCG 62.648 72.222 0.00 0.00 0.00 4.18
692 723 3.214250 CTCTAGCCGACCCGCATCC 62.214 68.421 0.00 0.00 0.00 3.51
693 724 2.017559 AACTCTAGCCGACCCGCATC 62.018 60.000 0.00 0.00 0.00 3.91
694 725 2.058595 AACTCTAGCCGACCCGCAT 61.059 57.895 0.00 0.00 0.00 4.73
695 726 2.678934 AACTCTAGCCGACCCGCA 60.679 61.111 0.00 0.00 0.00 5.69
698 729 1.142097 GAGCAACTCTAGCCGACCC 59.858 63.158 0.00 0.00 0.00 4.46
699 730 0.533032 AAGAGCAACTCTAGCCGACC 59.467 55.000 0.00 0.00 40.28 4.79
700 731 2.424246 ACTAAGAGCAACTCTAGCCGAC 59.576 50.000 0.00 0.00 40.28 4.79
701 732 2.724454 ACTAAGAGCAACTCTAGCCGA 58.276 47.619 0.00 0.00 40.28 5.54
702 733 4.036971 ACATACTAAGAGCAACTCTAGCCG 59.963 45.833 0.00 0.00 40.28 5.52
703 734 5.285651 CACATACTAAGAGCAACTCTAGCC 58.714 45.833 0.00 0.00 40.28 3.93
704 735 4.742659 GCACATACTAAGAGCAACTCTAGC 59.257 45.833 0.00 0.00 40.28 3.42
706 737 4.638865 TCGCACATACTAAGAGCAACTCTA 59.361 41.667 0.00 0.00 40.28 2.43
707 738 3.444034 TCGCACATACTAAGAGCAACTCT 59.556 43.478 0.00 0.00 43.37 3.24
708 739 3.770666 TCGCACATACTAAGAGCAACTC 58.229 45.455 0.00 0.00 0.00 3.01
709 740 3.868757 TCGCACATACTAAGAGCAACT 57.131 42.857 0.00 0.00 0.00 3.16
710 741 6.771188 ATTATCGCACATACTAAGAGCAAC 57.229 37.500 0.00 0.00 0.00 4.17
711 742 6.292865 GCAATTATCGCACATACTAAGAGCAA 60.293 38.462 0.00 0.00 0.00 3.91
712 743 5.177511 GCAATTATCGCACATACTAAGAGCA 59.822 40.000 0.00 0.00 0.00 4.26
713 744 5.177511 TGCAATTATCGCACATACTAAGAGC 59.822 40.000 0.00 0.00 33.55 4.09
714 745 6.769608 TGCAATTATCGCACATACTAAGAG 57.230 37.500 0.00 0.00 33.55 2.85
777 2998 3.554324 TGCGTTCACAAGTCAAACTACTC 59.446 43.478 0.00 0.00 0.00 2.59
778 2999 3.527533 TGCGTTCACAAGTCAAACTACT 58.472 40.909 0.00 0.00 0.00 2.57
779 3000 3.936902 TGCGTTCACAAGTCAAACTAC 57.063 42.857 0.00 0.00 0.00 2.73
1026 3272 1.153369 AGGTGAACGCCATCGGATG 60.153 57.895 11.07 11.07 40.69 3.51
1700 3995 4.758251 TCTGCCATGACGCACCCG 62.758 66.667 0.00 0.00 41.14 5.28
1727 4022 0.175760 CTCGGAAAATCCTCTCGCCA 59.824 55.000 0.00 0.00 33.30 5.69
1745 4040 0.249657 GAGAGATGAATTCGGCGGCT 60.250 55.000 7.21 0.00 0.00 5.52
2076 4404 2.171448 CCACCTCCTCCTTTATGGACAG 59.829 54.545 0.00 0.00 40.56 3.51
2123 4451 1.919240 TGGCCGTGACTCTCTTTCTA 58.081 50.000 0.00 0.00 0.00 2.10
2233 4613 7.693952 TCTACATATTTTGCATCCGAAAAGTC 58.306 34.615 0.00 0.00 0.00 3.01
2257 4637 5.039333 GCACTAAATTGTCATCCAAGCATC 58.961 41.667 0.00 0.00 36.25 3.91
2315 4696 2.068519 TGCAAGTGTACAGATGCTTCG 58.931 47.619 25.03 9.99 39.49 3.79
2317 4698 2.430465 CCTGCAAGTGTACAGATGCTT 58.570 47.619 25.03 11.27 39.49 3.91
2363 4755 7.992608 TGCATTGAACACTACATATTACAGGAT 59.007 33.333 0.00 0.00 0.00 3.24
2391 4945 5.588958 TGTCACCAATTTCATTCAACACA 57.411 34.783 0.00 0.00 0.00 3.72
2491 5055 6.223852 TGAGAGAACCAGTTTAATCTGACAC 58.776 40.000 13.98 5.72 37.61 3.67
2492 5056 6.419484 TGAGAGAACCAGTTTAATCTGACA 57.581 37.500 13.98 2.14 37.61 3.58
2531 5099 5.106948 CGCAAGAAACTGACTGAATGTGTAT 60.107 40.000 0.00 0.00 43.02 2.29
2720 8553 5.046591 CAGTTTGTACCCCTCTAATCTGACA 60.047 44.000 0.00 0.00 0.00 3.58
2849 8701 3.481112 AACGCAATTTCGAATACCCAC 57.519 42.857 4.06 0.00 0.00 4.61
2943 10092 2.481441 AGGGCTGGTAGATCAATCACA 58.519 47.619 0.00 0.00 0.00 3.58
2946 10095 4.156455 TGAAAGGGCTGGTAGATCAATC 57.844 45.455 0.00 0.00 0.00 2.67
2947 10096 4.018050 ACTTGAAAGGGCTGGTAGATCAAT 60.018 41.667 0.00 0.00 0.00 2.57
2995 10144 6.420306 TCGTCTGTAGTAAACGCAATTAAACA 59.580 34.615 0.00 0.00 36.40 2.83
3147 10408 1.734388 AACCAACTTGGCACCTTCGC 61.734 55.000 7.81 0.00 42.67 4.70
3163 10424 6.635030 ACTTTCACCTCATTCTGTAAAACC 57.365 37.500 0.00 0.00 0.00 3.27
3258 10532 9.088512 GATCAGGGTACGATTTATTACATCATC 57.911 37.037 0.00 0.00 0.00 2.92
3308 10582 2.030540 TCTCGGTGTTCAGACCTTTACG 60.031 50.000 0.00 0.00 33.35 3.18
3309 10583 3.655276 TCTCGGTGTTCAGACCTTTAC 57.345 47.619 0.00 0.00 33.35 2.01
3339 10613 5.832060 AGCCTTTATGATCAAGGATTCAAGG 59.168 40.000 14.94 8.55 43.32 3.61
3340 10614 6.735145 GCAGCCTTTATGATCAAGGATTCAAG 60.735 42.308 14.94 0.00 43.32 3.02
3341 10615 5.068198 GCAGCCTTTATGATCAAGGATTCAA 59.932 40.000 14.94 0.00 43.32 2.69
3342 10616 4.581824 GCAGCCTTTATGATCAAGGATTCA 59.418 41.667 14.94 0.00 43.32 2.57
3343 10617 4.581824 TGCAGCCTTTATGATCAAGGATTC 59.418 41.667 14.94 4.72 43.32 2.52
3344 10618 4.340381 GTGCAGCCTTTATGATCAAGGATT 59.660 41.667 14.94 0.82 43.32 3.01
3345 10619 3.887716 GTGCAGCCTTTATGATCAAGGAT 59.112 43.478 14.94 6.49 43.32 3.24
3346 10620 3.054139 AGTGCAGCCTTTATGATCAAGGA 60.054 43.478 14.94 0.00 43.32 3.36
3395 10669 4.371624 TCTCTGACATGGATGTTTGGTT 57.628 40.909 0.00 0.00 41.95 3.67
3407 10681 7.505248 TCTGAAGAGCATACTATTCTCTGACAT 59.495 37.037 2.18 0.00 43.21 3.06
3441 10716 1.751437 GGATTTGGTCCTGCAGGTAC 58.249 55.000 31.58 25.30 44.16 3.34
3457 10732 5.284582 GAGGGTGAATCCTATATCCTGGAT 58.715 45.833 14.66 14.66 44.21 3.41
3464 10739 6.996180 TCTTTTCGAGGGTGAATCCTATAT 57.004 37.500 0.00 0.00 37.25 0.86
3465 10740 6.406692 CTCTTTTCGAGGGTGAATCCTATA 57.593 41.667 0.00 0.00 37.25 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.