Multiple sequence alignment - TraesCS7A01G249100
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BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7A01G249100
chr7A
100.000
9258
0
0
1
9258
231540567
231549824
0.000000e+00
17097.0
1
TraesCS7A01G249100
chr7A
92.713
1043
70
5
2057
3097
571321527
571320489
0.000000e+00
1500.0
2
TraesCS7A01G249100
chr7A
92.447
1046
71
6
2054
3098
694567344
694568382
0.000000e+00
1487.0
3
TraesCS7A01G249100
chr7A
89.327
431
29
7
1662
2078
694566978
694567405
8.240000e-145
525.0
4
TraesCS7A01G249100
chr7D
96.502
6203
120
40
3100
9258
219290738
219296887
0.000000e+00
10163.0
5
TraesCS7A01G249100
chr7D
88.067
1190
118
11
1
1172
219289132
219290315
0.000000e+00
1389.0
6
TraesCS7A01G249100
chr7D
88.170
448
31
13
1234
1671
219290307
219290742
1.780000e-141
514.0
7
TraesCS7A01G249100
chr7B
95.970
5509
170
28
3499
8978
181039170
181033685
0.000000e+00
8896.0
8
TraesCS7A01G249100
chr7B
87.614
1098
99
18
1
1083
181041733
181040658
0.000000e+00
1240.0
9
TraesCS7A01G249100
chr7B
85.546
595
54
16
1081
1665
181040384
181039812
2.230000e-165
593.0
10
TraesCS7A01G249100
chr7B
92.058
277
10
4
8982
9258
181033583
181033319
6.780000e-101
379.0
11
TraesCS7A01G249100
chr7B
84.518
394
19
12
3102
3465
181039804
181039423
1.480000e-92
351.0
12
TraesCS7A01G249100
chr6A
92.922
1441
88
4
1670
3097
78005400
78006839
0.000000e+00
2084.0
13
TraesCS7A01G249100
chr6A
92.490
1438
92
4
1670
3097
78157914
78159345
0.000000e+00
2043.0
14
TraesCS7A01G249100
chr6A
92.202
1449
88
6
1672
3097
99770004
99768558
0.000000e+00
2026.0
15
TraesCS7A01G249100
chr6A
91.597
1440
97
10
1670
3097
584929113
584927686
0.000000e+00
1967.0
16
TraesCS7A01G249100
chr2A
91.354
1411
104
6
1703
3097
731253823
731252415
0.000000e+00
1914.0
17
TraesCS7A01G249100
chr2A
91.711
1122
88
3
1978
3098
543349995
543351112
0.000000e+00
1552.0
18
TraesCS7A01G249100
chr2A
88.785
428
31
7
1664
2078
767620688
767621111
8.290000e-140
508.0
19
TraesCS7A01G249100
chr2A
88.152
422
34
6
1670
2078
14408918
14409336
1.080000e-133
488.0
20
TraesCS7A01G249100
chr2A
85.000
60
5
3
4150
4206
637984511
637984569
3.610000e-04
58.4
21
TraesCS7A01G249100
chr5A
92.470
1089
75
6
2015
3098
525121344
525122430
0.000000e+00
1550.0
22
TraesCS7A01G249100
chr5A
90.704
398
28
1
1670
2058
120001157
120000760
1.070000e-143
521.0
23
TraesCS7A01G249100
chr4A
92.344
1045
77
3
2054
3097
36151349
36152391
0.000000e+00
1483.0
24
TraesCS7A01G249100
chr4A
90.521
422
24
6
1670
2078
36150992
36151410
2.270000e-150
544.0
25
TraesCS7A01G249100
chr4A
88.929
280
26
4
1791
2068
629455505
629455229
3.200000e-89
340.0
26
TraesCS7A01G249100
chr6B
85.165
1456
164
33
1670
3097
565046632
565045201
0.000000e+00
1445.0
27
TraesCS7A01G249100
chr3A
89.731
409
31
3
1660
2058
746579924
746579517
6.410000e-141
512.0
28
TraesCS7A01G249100
chr2B
81.934
393
57
11
1670
2058
65682289
65682671
4.170000e-83
320.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7A01G249100
chr7A
231540567
231549824
9257
False
17097.0
17097
100.0000
1
9258
1
chr7A.!!$F1
9257
1
TraesCS7A01G249100
chr7A
571320489
571321527
1038
True
1500.0
1500
92.7130
2057
3097
1
chr7A.!!$R1
1040
2
TraesCS7A01G249100
chr7A
694566978
694568382
1404
False
1006.0
1487
90.8870
1662
3098
2
chr7A.!!$F2
1436
3
TraesCS7A01G249100
chr7D
219289132
219296887
7755
False
4022.0
10163
90.9130
1
9258
3
chr7D.!!$F1
9257
4
TraesCS7A01G249100
chr7B
181033319
181041733
8414
True
2291.8
8896
89.1412
1
9258
5
chr7B.!!$R1
9257
5
TraesCS7A01G249100
chr6A
78005400
78006839
1439
False
2084.0
2084
92.9220
1670
3097
1
chr6A.!!$F1
1427
6
TraesCS7A01G249100
chr6A
78157914
78159345
1431
False
2043.0
2043
92.4900
1670
3097
1
chr6A.!!$F2
1427
7
TraesCS7A01G249100
chr6A
99768558
99770004
1446
True
2026.0
2026
92.2020
1672
3097
1
chr6A.!!$R1
1425
8
TraesCS7A01G249100
chr6A
584927686
584929113
1427
True
1967.0
1967
91.5970
1670
3097
1
chr6A.!!$R2
1427
9
TraesCS7A01G249100
chr2A
731252415
731253823
1408
True
1914.0
1914
91.3540
1703
3097
1
chr2A.!!$R1
1394
10
TraesCS7A01G249100
chr2A
543349995
543351112
1117
False
1552.0
1552
91.7110
1978
3098
1
chr2A.!!$F2
1120
11
TraesCS7A01G249100
chr5A
525121344
525122430
1086
False
1550.0
1550
92.4700
2015
3098
1
chr5A.!!$F1
1083
12
TraesCS7A01G249100
chr4A
36150992
36152391
1399
False
1013.5
1483
91.4325
1670
3097
2
chr4A.!!$F1
1427
13
TraesCS7A01G249100
chr6B
565045201
565046632
1431
True
1445.0
1445
85.1650
1670
3097
1
chr6B.!!$R1
1427
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
832
849
0.600557
TAGCGCCCAAACACCATTTG
59.399
50.000
2.29
0.00
0.00
2.32
F
1299
1604
0.031178
AACTCGTGTTTCGGTAGCGT
59.969
50.000
14.79
0.00
40.32
5.07
F
3017
3487
0.249911
AAAGTCCGTTTGCTCTCGCT
60.250
50.000
0.00
0.00
36.97
4.93
F
3075
3547
0.033796
ACGGGGTCGGACAGAATAGA
60.034
55.000
10.76
0.00
41.39
1.98
F
4705
5468
0.035534
TATGATGCCACACGGTTGCT
60.036
50.000
0.00
0.00
33.28
3.91
F
4708
5471
0.378257
GATGCCACACGGTTGCTATG
59.622
55.000
0.00
0.00
33.28
2.23
F
5526
6290
1.077501
TAGCAGCACCCATGGAAGC
60.078
57.895
15.22
16.66
0.00
3.86
F
6861
7625
1.003580
TCCTGCTTGACCATTGACTCC
59.996
52.381
0.00
0.00
0.00
3.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1981
2312
0.322975
ACAAGTGCATCGAGAAGGCT
59.677
50.000
0.0
0.0
0.00
4.58
R
3054
3526
0.033796
TATTCTGTCCGACCCCGTCT
60.034
55.000
0.0
0.0
0.00
4.18
R
4708
5471
0.037590
TCTGGCCCAATACACACACC
59.962
55.000
0.0
0.0
0.00
4.16
R
4753
5516
1.883275
CTCGGCCTACATAGAGACCAG
59.117
57.143
0.0
0.0
32.84
4.00
R
5862
6626
0.263172
ATGTGGGGTTTGGTGGTGAA
59.737
50.000
0.0
0.0
0.00
3.18
R
6431
7195
2.819608
TCGCTGGAGGAAATTTTCTTGG
59.180
45.455
0.0
0.0
0.00
3.61
R
7417
8181
1.220749
GCACCAGTCCCGCTCATTA
59.779
57.895
0.0
0.0
0.00
1.90
R
8315
9079
0.250770
GTTCCACACCCTCTGGTTCC
60.251
60.000
0.0
0.0
44.75
3.62
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
30
31
4.630069
GCTCTTGGCGTTCAACTTTATCTA
59.370
41.667
0.00
0.00
0.00
1.98
31
32
5.121768
GCTCTTGGCGTTCAACTTTATCTAA
59.878
40.000
0.00
0.00
0.00
2.10
32
33
6.183360
GCTCTTGGCGTTCAACTTTATCTAAT
60.183
38.462
0.00
0.00
0.00
1.73
48
49
9.413734
CTTTATCTAATCTTTTTGGGTGATCCT
57.586
33.333
0.00
0.00
36.20
3.24
64
65
2.249309
TCCTAGAGGAACCAAGGGTC
57.751
55.000
0.00
0.00
42.18
4.46
101
103
8.918202
TGAAGGTACAATAAGATGACAAAAGT
57.082
30.769
0.00
0.00
0.00
2.66
110
112
2.108952
AGATGACAAAAGTGAAGGGCCT
59.891
45.455
0.00
0.00
0.00
5.19
116
118
1.332195
AAAGTGAAGGGCCTTGAAGC
58.668
50.000
26.47
9.85
0.00
3.86
122
124
2.991540
GGGCCTTGAAGCACCCAC
60.992
66.667
14.53
0.00
42.33
4.61
127
129
1.402787
CCTTGAAGCACCCACACTTT
58.597
50.000
0.00
0.00
0.00
2.66
133
135
2.363306
AGCACCCACACTTTCATTGA
57.637
45.000
0.00
0.00
0.00
2.57
141
143
5.163513
CCCACACTTTCATTGAATAAGCAC
58.836
41.667
0.00
0.00
0.00
4.40
145
147
5.238432
ACACTTTCATTGAATAAGCACGACA
59.762
36.000
0.00
0.00
0.00
4.35
214
216
7.119846
GCTAGTCCTTGCATTTTACATATAGGG
59.880
40.741
0.00
0.00
0.00
3.53
216
218
7.354312
AGTCCTTGCATTTTACATATAGGGTT
58.646
34.615
0.00
0.00
0.00
4.11
317
319
1.536676
CACTTGGGGTGGTGACCTT
59.463
57.895
2.11
0.00
42.66
3.50
343
345
2.624029
CCCCATATCCACCAGTTTTGCT
60.624
50.000
0.00
0.00
0.00
3.91
365
367
0.804989
CGGCGAAGGAAGAAGCAAAT
59.195
50.000
0.00
0.00
0.00
2.32
414
420
2.353406
CCTTTTAGCTTCTCGTCGGGAA
60.353
50.000
7.45
7.45
0.00
3.97
520
530
2.150719
ACCACATCCACAACCGGGA
61.151
57.895
6.32
0.00
39.14
5.14
527
537
3.253838
CACAACCGGGAAGGGGGA
61.254
66.667
6.32
0.00
46.96
4.81
528
539
2.450897
ACAACCGGGAAGGGGGAA
60.451
61.111
6.32
0.00
46.96
3.97
552
563
1.073025
ACCGATGAGCACCAAAGCA
59.927
52.632
0.00
0.00
36.85
3.91
557
568
0.957395
ATGAGCACCAAAGCACCTCG
60.957
55.000
0.00
0.00
36.85
4.63
571
582
2.651361
CTCGGTGGACGCTCTTGT
59.349
61.111
0.00
0.00
43.86
3.16
636
647
1.950828
CCTCATCTGCATCTTCGCTT
58.049
50.000
0.00
0.00
0.00
4.68
637
648
2.286872
CCTCATCTGCATCTTCGCTTT
58.713
47.619
0.00
0.00
0.00
3.51
643
654
2.093288
TCTGCATCTTCGCTTTCTCCAT
60.093
45.455
0.00
0.00
0.00
3.41
651
662
2.464459
GCTTTCTCCATCACGGCGG
61.464
63.158
13.24
0.00
33.14
6.13
683
700
4.314522
TGGGGCAAACTCATTATCTTCA
57.685
40.909
0.00
0.00
0.00
3.02
717
734
0.988832
ACGGGGACAATGAAGCCTTA
59.011
50.000
0.00
0.00
0.00
2.69
793
810
2.815308
CGACCCATAAGCTCCGCT
59.185
61.111
0.00
0.00
42.56
5.52
832
849
0.600557
TAGCGCCCAAACACCATTTG
59.399
50.000
2.29
0.00
0.00
2.32
843
860
1.963515
ACACCATTTGAAGGCAAGTCC
59.036
47.619
0.00
0.00
35.04
3.85
904
921
2.270434
TTCCCTAACCATCTCCAGCT
57.730
50.000
0.00
0.00
0.00
4.24
925
942
2.034687
AGCGCCATCAAGCAAGGT
59.965
55.556
2.29
0.00
35.48
3.50
938
955
1.498865
GCAAGGTATGTGATCGGCCG
61.499
60.000
22.12
22.12
0.00
6.13
952
969
4.360405
GCCGGGGAGCCAAAGGAA
62.360
66.667
2.18
0.00
0.00
3.36
968
985
1.694696
AGGAAACTCTCAACGGAGCTT
59.305
47.619
0.00
0.00
41.13
3.74
970
987
2.289133
GGAAACTCTCAACGGAGCTTCT
60.289
50.000
0.00
0.00
41.13
2.85
983
1000
3.222603
GGAGCTTCTAGAAGGAGAGAGG
58.777
54.545
29.22
7.11
38.80
3.69
988
1005
4.630184
GCTTCTAGAAGGAGAGAGGGAAGA
60.630
50.000
29.22
0.00
38.80
2.87
1003
1020
6.657875
AGAGGGAAGAAAGTGATAAGAATGG
58.342
40.000
0.00
0.00
0.00
3.16
1004
1021
5.760131
AGGGAAGAAAGTGATAAGAATGGG
58.240
41.667
0.00
0.00
0.00
4.00
1007
1024
3.903467
AGAAAGTGATAAGAATGGGCCC
58.097
45.455
17.59
17.59
0.00
5.80
1025
1042
3.704566
GGCCCCTTATCCAGGTTAAAAAG
59.295
47.826
0.00
0.00
42.02
2.27
1032
1049
8.536175
CCCTTATCCAGGTTAAAAAGCAATTAA
58.464
33.333
0.00
0.00
42.02
1.40
1125
1428
7.543359
AACAAAAGATTCATGGAGGAAATCA
57.457
32.000
6.79
0.00
0.00
2.57
1159
1462
8.015087
GGTTAAACCTTGCAAAGCATTATTTTC
58.985
33.333
0.00
0.00
44.44
2.29
1160
1463
5.844301
AACCTTGCAAAGCATTATTTTCG
57.156
34.783
0.00
0.00
44.44
3.46
1200
1503
2.806745
CGAGTTCTTGCAAGTTCCCTCA
60.807
50.000
25.19
1.79
0.00
3.86
1205
1508
1.000171
CTTGCAAGTTCCCTCAAAGCC
60.000
52.381
18.65
0.00
0.00
4.35
1208
1511
1.000171
GCAAGTTCCCTCAAAGCCTTG
60.000
52.381
0.00
0.00
34.03
3.61
1223
1526
2.494870
AGCCTTGAAGCAACCATCAATC
59.505
45.455
0.00
0.00
35.20
2.67
1226
1529
3.367703
CCTTGAAGCAACCATCAATCCAC
60.368
47.826
0.00
0.00
35.20
4.02
1228
1531
2.557924
TGAAGCAACCATCAATCCACAC
59.442
45.455
0.00
0.00
0.00
3.82
1232
1535
2.231964
GCAACCATCAATCCACACACAT
59.768
45.455
0.00
0.00
0.00
3.21
1235
1538
5.584442
CAACCATCAATCCACACACATATG
58.416
41.667
0.00
0.00
0.00
1.78
1236
1539
4.858850
ACCATCAATCCACACACATATGT
58.141
39.130
1.41
1.41
40.80
2.29
1274
1577
9.061435
AGTAAGATTTAGCAAGCATTTCTATCC
57.939
33.333
0.00
0.00
0.00
2.59
1279
1582
4.382345
AGCAAGCATTTCTATCCTTTGC
57.618
40.909
0.00
0.00
0.00
3.68
1280
1583
3.765511
AGCAAGCATTTCTATCCTTTGCA
59.234
39.130
8.71
0.00
35.79
4.08
1288
1593
3.678056
TCTATCCTTTGCAACTCGTGT
57.322
42.857
0.00
0.00
0.00
4.49
1295
1600
1.937278
TTGCAACTCGTGTTTCGGTA
58.063
45.000
0.00
0.00
40.32
4.02
1296
1601
1.493772
TGCAACTCGTGTTTCGGTAG
58.506
50.000
0.00
0.00
40.32
3.18
1299
1604
0.031178
AACTCGTGTTTCGGTAGCGT
59.969
50.000
14.79
0.00
40.32
5.07
1321
1626
3.646162
TCCTACCAATCATAGCCGTCAAT
59.354
43.478
0.00
0.00
0.00
2.57
1323
1628
3.845781
ACCAATCATAGCCGTCAATCT
57.154
42.857
0.00
0.00
0.00
2.40
1351
1656
8.734218
ATGATGATAATTCTCATGGATGCTAC
57.266
34.615
10.77
0.00
36.01
3.58
1355
1660
8.193953
TGATAATTCTCATGGATGCTACAGTA
57.806
34.615
0.00
0.00
0.00
2.74
1356
1661
8.309656
TGATAATTCTCATGGATGCTACAGTAG
58.690
37.037
2.85
2.85
0.00
2.57
1357
1662
6.737720
AATTCTCATGGATGCTACAGTAGA
57.262
37.500
12.15
0.00
0.00
2.59
1358
1663
5.781210
TTCTCATGGATGCTACAGTAGAG
57.219
43.478
12.15
0.00
0.00
2.43
1359
1664
4.797743
TCTCATGGATGCTACAGTAGAGT
58.202
43.478
12.15
0.00
0.00
3.24
1360
1665
5.204292
TCTCATGGATGCTACAGTAGAGTT
58.796
41.667
12.15
0.00
0.00
3.01
1361
1666
5.658634
TCTCATGGATGCTACAGTAGAGTTT
59.341
40.000
12.15
0.00
0.00
2.66
1363
1668
6.711277
TCATGGATGCTACAGTAGAGTTTTT
58.289
36.000
12.15
0.00
0.00
1.94
1364
1669
6.595326
TCATGGATGCTACAGTAGAGTTTTTG
59.405
38.462
12.15
2.34
0.00
2.44
1365
1670
6.109156
TGGATGCTACAGTAGAGTTTTTGA
57.891
37.500
12.15
0.00
0.00
2.69
1366
1671
5.932303
TGGATGCTACAGTAGAGTTTTTGAC
59.068
40.000
12.15
0.00
0.00
3.18
1377
1682
4.860072
AGAGTTTTTGACTTTTCATCCGC
58.140
39.130
0.00
0.00
39.19
5.54
1418
1724
1.080025
GCTACCTCGCCAAGAACGT
60.080
57.895
0.00
0.00
0.00
3.99
1435
1741
2.159382
ACGTCGGGCTTGAATTCAAAT
58.841
42.857
20.82
0.00
35.15
2.32
1436
1742
2.095263
ACGTCGGGCTTGAATTCAAATG
60.095
45.455
20.82
13.38
35.15
2.32
1449
1755
6.545508
TGAATTCAAATGTTCATCTGTAGCG
58.454
36.000
5.45
0.00
29.93
4.26
1453
1759
2.967599
ATGTTCATCTGTAGCGAGCA
57.032
45.000
0.00
0.00
0.00
4.26
1477
1783
4.503741
AACACCATTTTTCTCACCGATG
57.496
40.909
0.00
0.00
0.00
3.84
1525
1840
3.627577
AGGCCAAGTACAATAATGAAGCG
59.372
43.478
5.01
0.00
0.00
4.68
1585
1903
2.588034
GATACGAGGCCGGGCAAC
60.588
66.667
31.59
21.52
40.78
4.17
1626
1944
2.987547
AAAGCGACCCGAGACCGA
60.988
61.111
0.00
0.00
38.22
4.69
1627
1945
2.991076
AAAGCGACCCGAGACCGAG
61.991
63.158
0.00
0.00
38.22
4.63
1703
2021
1.366111
CGCGATCCCAAACGGACATT
61.366
55.000
0.00
0.00
46.09
2.71
1755
2073
2.175035
GATTTGGGGTCGTGTCCGGA
62.175
60.000
0.00
0.00
33.95
5.14
1909
2240
8.522542
TTTTGACTAGTAAAGTAAGGCCAAAA
57.477
30.769
5.01
1.69
39.07
2.44
1981
2312
2.708861
TGCTTCCTTGAGTTGGGTTAGA
59.291
45.455
0.00
0.00
0.00
2.10
2019
2389
2.038952
TGTTGTTGATCTGTGGAGGAGG
59.961
50.000
0.00
0.00
0.00
4.30
2020
2390
1.279496
TGTTGATCTGTGGAGGAGGG
58.721
55.000
0.00
0.00
0.00
4.30
2021
2391
1.280457
GTTGATCTGTGGAGGAGGGT
58.720
55.000
0.00
0.00
0.00
4.34
2022
2392
1.208293
GTTGATCTGTGGAGGAGGGTC
59.792
57.143
0.00
0.00
0.00
4.46
2023
2393
0.684479
TGATCTGTGGAGGAGGGTCG
60.684
60.000
0.00
0.00
0.00
4.79
2024
2394
0.395862
GATCTGTGGAGGAGGGTCGA
60.396
60.000
0.00
0.00
0.00
4.20
2025
2395
0.263172
ATCTGTGGAGGAGGGTCGAT
59.737
55.000
0.00
0.00
0.00
3.59
2026
2396
0.395862
TCTGTGGAGGAGGGTCGATC
60.396
60.000
0.00
0.00
0.00
3.69
2027
2397
0.396417
CTGTGGAGGAGGGTCGATCT
60.396
60.000
0.00
0.00
0.00
2.75
2028
2398
0.684479
TGTGGAGGAGGGTCGATCTG
60.684
60.000
0.00
0.00
0.00
2.90
2029
2399
1.075970
TGGAGGAGGGTCGATCTGG
60.076
63.158
0.00
0.00
0.00
3.86
2030
2400
2.503382
GGAGGAGGGTCGATCTGGC
61.503
68.421
0.00
0.00
0.00
4.85
2031
2401
1.758514
GAGGAGGGTCGATCTGGCA
60.759
63.158
0.00
0.00
0.00
4.92
2032
2402
1.074926
AGGAGGGTCGATCTGGCAT
60.075
57.895
0.00
0.00
0.00
4.40
2033
2403
1.118356
AGGAGGGTCGATCTGGCATC
61.118
60.000
0.00
0.00
0.00
3.91
2034
2404
1.369321
GAGGGTCGATCTGGCATCC
59.631
63.158
0.00
0.00
0.00
3.51
2035
2405
1.074926
AGGGTCGATCTGGCATCCT
60.075
57.895
0.00
0.00
0.00
3.24
2036
2406
1.118356
AGGGTCGATCTGGCATCCTC
61.118
60.000
0.00
0.00
0.00
3.71
2037
2407
1.369321
GGTCGATCTGGCATCCTCC
59.631
63.158
0.00
0.00
0.00
4.30
2038
2408
1.118356
GGTCGATCTGGCATCCTCCT
61.118
60.000
0.00
0.00
0.00
3.69
2039
2409
0.755686
GTCGATCTGGCATCCTCCTT
59.244
55.000
0.00
0.00
0.00
3.36
2040
2410
1.139853
GTCGATCTGGCATCCTCCTTT
59.860
52.381
0.00
0.00
0.00
3.11
2041
2411
1.414181
TCGATCTGGCATCCTCCTTTC
59.586
52.381
0.00
0.00
0.00
2.62
2042
2412
1.415659
CGATCTGGCATCCTCCTTTCT
59.584
52.381
0.00
0.00
0.00
2.52
2043
2413
2.158842
CGATCTGGCATCCTCCTTTCTT
60.159
50.000
0.00
0.00
0.00
2.52
2044
2414
3.475575
GATCTGGCATCCTCCTTTCTTC
58.524
50.000
0.00
0.00
0.00
2.87
2045
2415
2.555664
TCTGGCATCCTCCTTTCTTCT
58.444
47.619
0.00
0.00
0.00
2.85
2046
2416
2.915604
TCTGGCATCCTCCTTTCTTCTT
59.084
45.455
0.00
0.00
0.00
2.52
2047
2417
3.054802
TCTGGCATCCTCCTTTCTTCTTC
60.055
47.826
0.00
0.00
0.00
2.87
2048
2418
2.644299
TGGCATCCTCCTTTCTTCTTCA
59.356
45.455
0.00
0.00
0.00
3.02
2049
2419
3.074390
TGGCATCCTCCTTTCTTCTTCAA
59.926
43.478
0.00
0.00
0.00
2.69
2050
2420
3.693578
GGCATCCTCCTTTCTTCTTCAAG
59.306
47.826
0.00
0.00
0.00
3.02
2051
2421
3.128415
GCATCCTCCTTTCTTCTTCAAGC
59.872
47.826
0.00
0.00
0.00
4.01
2052
2422
4.587891
CATCCTCCTTTCTTCTTCAAGCT
58.412
43.478
0.00
0.00
0.00
3.74
2053
2423
5.738909
CATCCTCCTTTCTTCTTCAAGCTA
58.261
41.667
0.00
0.00
0.00
3.32
2054
2424
5.413309
TCCTCCTTTCTTCTTCAAGCTAG
57.587
43.478
0.00
0.00
0.00
3.42
2055
2425
5.087323
TCCTCCTTTCTTCTTCAAGCTAGA
58.913
41.667
0.00
0.00
0.00
2.43
2065
2435
3.449018
TCTTCAAGCTAGAAGGCTCGATT
59.551
43.478
0.00
0.00
44.01
3.34
2068
2438
3.195610
TCAAGCTAGAAGGCTCGATTTGA
59.804
43.478
0.00
0.00
42.24
2.69
2073
2443
3.616956
AGAAGGCTCGATTTGACATCA
57.383
42.857
0.00
0.00
0.00
3.07
2130
2566
2.093075
CCTCCTCACACCTAGTCTCGTA
60.093
54.545
0.00
0.00
0.00
3.43
2132
2568
3.542648
TCCTCACACCTAGTCTCGTATG
58.457
50.000
0.00
0.00
0.00
2.39
2562
3002
3.831651
GCTAGAGGAGGAGCCACTA
57.168
57.895
0.00
0.00
38.61
2.74
2690
3130
4.726304
CCCTAAAACCGGCCGGCA
62.726
66.667
43.58
24.51
39.32
5.69
2751
3191
2.609610
CGAGGGGAAGGGGTTGGA
60.610
66.667
0.00
0.00
0.00
3.53
2872
3341
2.943036
AGAAAAAGGCCCGTCTTGTA
57.057
45.000
0.00
0.00
0.00
2.41
2904
3374
2.429930
CAAGGGGAGGACACGCAA
59.570
61.111
0.00
0.00
0.00
4.85
2964
3434
3.053896
GCGGCGTAAACTTGGGCT
61.054
61.111
9.37
0.00
0.00
5.19
3013
3483
1.947456
GGACAAAAGTCCGTTTGCTCT
59.053
47.619
5.75
0.00
41.33
4.09
3017
3487
0.249911
AAAGTCCGTTTGCTCTCGCT
60.250
50.000
0.00
0.00
36.97
4.93
3070
3542
2.675423
CAGACGGGGTCGGACAGA
60.675
66.667
10.76
0.00
41.39
3.41
3075
3547
0.033796
ACGGGGTCGGACAGAATAGA
60.034
55.000
10.76
0.00
41.39
1.98
3098
3570
2.985847
GTGGTGGAGTTGGCCTGC
60.986
66.667
3.32
0.00
0.00
4.85
3099
3571
4.641645
TGGTGGAGTTGGCCTGCG
62.642
66.667
3.32
0.00
33.44
5.18
3212
3699
2.165301
GCATCAGTCGTACCCGCAC
61.165
63.158
0.00
0.00
0.00
5.34
3213
3700
1.518572
CATCAGTCGTACCCGCACC
60.519
63.158
0.00
0.00
0.00
5.01
3214
3701
1.980232
ATCAGTCGTACCCGCACCA
60.980
57.895
0.00
0.00
0.00
4.17
3215
3702
1.945354
ATCAGTCGTACCCGCACCAG
61.945
60.000
0.00
0.00
0.00
4.00
3216
3703
4.065281
AGTCGTACCCGCACCAGC
62.065
66.667
0.00
0.00
37.42
4.85
3234
3721
2.707849
CGCCAGTACCAGTACCGCT
61.708
63.158
12.94
0.00
36.75
5.52
3469
3990
3.696782
CGCTACACGCTAGTTGAGT
57.303
52.632
0.96
0.00
36.13
3.41
3470
3991
1.978542
CGCTACACGCTAGTTGAGTT
58.021
50.000
0.96
0.00
36.13
3.01
3471
3992
1.649171
CGCTACACGCTAGTTGAGTTG
59.351
52.381
0.96
0.00
36.13
3.16
3472
3993
2.667448
CGCTACACGCTAGTTGAGTTGA
60.667
50.000
0.96
0.00
36.13
3.18
3473
3994
2.917971
GCTACACGCTAGTTGAGTTGAG
59.082
50.000
0.96
0.00
35.14
3.02
3486
4007
2.093288
TGAGTTGAGCAGCTAATCCCAG
60.093
50.000
0.00
0.00
0.00
4.45
3527
4267
4.806339
CTCGCCCTCCCCTTCCCT
62.806
72.222
0.00
0.00
0.00
4.20
3531
4271
4.038804
CCCTCCCCTTCCCTCCCA
62.039
72.222
0.00
0.00
0.00
4.37
3532
4272
2.692741
CCTCCCCTTCCCTCCCAC
60.693
72.222
0.00
0.00
0.00
4.61
3533
4273
2.692741
CTCCCCTTCCCTCCCACC
60.693
72.222
0.00
0.00
0.00
4.61
3534
4274
4.364686
TCCCCTTCCCTCCCACCC
62.365
72.222
0.00
0.00
0.00
4.61
3656
4404
1.519408
CGTTTCCACCATTTCTCCGT
58.481
50.000
0.00
0.00
0.00
4.69
3832
4589
0.951558
GGTTTTGATCCGTGCTGTGT
59.048
50.000
0.00
0.00
0.00
3.72
3836
4593
3.188786
GATCCGTGCTGTGTCGCC
61.189
66.667
0.00
0.00
0.00
5.54
3855
4612
2.819595
GGCTTGCGCAGATCCGAA
60.820
61.111
11.31
0.00
38.10
4.30
3870
4627
1.375523
CGAAGGAGAACCAACCGGG
60.376
63.158
6.32
0.00
44.81
5.73
4159
4922
2.440599
GGGCTGAACCACCACCAT
59.559
61.111
0.00
0.00
42.05
3.55
4165
4928
0.110295
TGAACCACCACCATCACCAG
59.890
55.000
0.00
0.00
0.00
4.00
4300
5063
1.592669
GATGGATGTGAGCCCGACG
60.593
63.158
0.00
0.00
0.00
5.12
4356
5119
2.745492
GTCACAGGAGCAGGCTGC
60.745
66.667
31.56
31.56
45.46
5.25
4514
5277
0.676466
CAGCGCCAAGGATTACCACA
60.676
55.000
2.29
0.00
38.94
4.17
4625
5388
1.089920
ATGATCGTGCCTGCAAACTC
58.910
50.000
0.00
0.00
0.00
3.01
4697
5460
5.073554
AGGGATTTATGTCTATGATGCCACA
59.926
40.000
0.00
0.00
0.00
4.17
4698
5461
5.182001
GGGATTTATGTCTATGATGCCACAC
59.818
44.000
0.00
0.00
0.00
3.82
4700
5463
2.245159
ATGTCTATGATGCCACACGG
57.755
50.000
0.00
0.00
0.00
4.94
4702
5465
1.277842
TGTCTATGATGCCACACGGTT
59.722
47.619
0.00
0.00
33.28
4.44
4703
5466
1.665679
GTCTATGATGCCACACGGTTG
59.334
52.381
0.00
0.00
33.28
3.77
4704
5467
0.378257
CTATGATGCCACACGGTTGC
59.622
55.000
0.00
0.00
33.28
4.17
4705
5468
0.035534
TATGATGCCACACGGTTGCT
60.036
50.000
0.00
0.00
33.28
3.91
4706
5469
0.035534
ATGATGCCACACGGTTGCTA
60.036
50.000
0.00
0.00
33.28
3.49
4707
5470
0.035534
TGATGCCACACGGTTGCTAT
60.036
50.000
0.00
0.00
33.28
2.97
4708
5471
0.378257
GATGCCACACGGTTGCTATG
59.622
55.000
0.00
0.00
33.28
2.23
4753
5516
8.743714
AGAAATGGTTTCTCTATCCAATGTTTC
58.256
33.333
0.00
0.00
46.62
2.78
4770
5533
3.451178
TGTTTCTGGTCTCTATGTAGGCC
59.549
47.826
0.00
0.00
41.94
5.19
4931
5694
4.924305
ACAGATGTTGCTTCACAATTGT
57.076
36.364
4.92
4.92
41.27
2.71
5039
5802
4.760530
TGATCCCCTACTGAACTTGATG
57.239
45.455
0.00
0.00
0.00
3.07
5526
6290
1.077501
TAGCAGCACCCATGGAAGC
60.078
57.895
15.22
16.66
0.00
3.86
5832
6596
1.363807
GCCACCGCTTGAGCTTTTT
59.636
52.632
1.07
0.00
39.32
1.94
5862
6626
3.361174
CGGCCAACGGAAAATGGT
58.639
55.556
2.24
0.00
39.00
3.55
5883
6647
1.713647
TCACCACCAAACCCCACATAT
59.286
47.619
0.00
0.00
0.00
1.78
5913
6677
4.458989
TGTTATGCTTCAACATCTGGTTCC
59.541
41.667
0.00
0.00
37.72
3.62
5972
6736
5.705905
AGGTAATTTATATCGAAGCTTGCCC
59.294
40.000
2.10
0.00
0.00
5.36
6003
6767
1.533625
TATGTCACAAGCCAAGGTGC
58.466
50.000
0.00
0.00
35.04
5.01
6005
6769
2.594303
TCACAAGCCAAGGTGCCG
60.594
61.111
0.00
0.00
35.04
5.69
6044
6808
3.056304
GCTTTCAACCTAATTTGCGCAA
58.944
40.909
21.02
21.02
0.00
4.85
6405
7169
8.749499
GCAATAGAATTGTTGCACATTTATCTC
58.251
33.333
12.43
0.00
46.84
2.75
6431
7195
7.112565
CACATCGTATGATTTTTAATGCAGCTC
59.887
37.037
0.00
0.00
30.49
4.09
6432
7196
6.060028
TCGTATGATTTTTAATGCAGCTCC
57.940
37.500
0.00
0.00
0.00
4.70
6603
7367
4.604156
TCTCTATTCCTGCTCACTCTTCA
58.396
43.478
0.00
0.00
0.00
3.02
6624
7388
8.869109
TCTTCAATGGGTTTTGACTATGAATTT
58.131
29.630
0.00
0.00
35.42
1.82
6861
7625
1.003580
TCCTGCTTGACCATTGACTCC
59.996
52.381
0.00
0.00
0.00
3.85
7105
7869
6.668323
AGGTGATTACAACTTTGAATGTTCG
58.332
36.000
0.00
0.00
41.81
3.95
7891
8655
2.447443
TCTCCTGAAGTGTATGCGACT
58.553
47.619
0.00
0.00
0.00
4.18
7993
8757
7.274250
GTGCTCAACAAAGGTGAAATTCATATC
59.726
37.037
0.00
0.00
0.00
1.63
8430
9194
2.224917
TGGATAAAACCTTGCCGGAAGT
60.225
45.455
5.05
0.00
36.31
3.01
8480
9248
1.138661
CCAGCTTCTAAGGGCAGAGAG
59.861
57.143
0.00
0.00
0.00
3.20
8887
9665
7.392113
TGGTTTATTCGATTACCATCACAACTT
59.608
33.333
4.84
0.00
35.82
2.66
8888
9666
8.241367
GGTTTATTCGATTACCATCACAACTTT
58.759
33.333
0.00
0.00
0.00
2.66
8889
9667
9.061610
GTTTATTCGATTACCATCACAACTTTG
57.938
33.333
0.00
0.00
0.00
2.77
8890
9668
5.621197
TTCGATTACCATCACAACTTTGG
57.379
39.130
0.00
0.00
36.56
3.28
8891
9669
4.900684
TCGATTACCATCACAACTTTGGA
58.099
39.130
0.00
0.00
34.52
3.53
8892
9670
4.935205
TCGATTACCATCACAACTTTGGAG
59.065
41.667
0.00
0.00
34.52
3.86
8901
9679
2.618709
CACAACTTTGGAGTGGAGTTCC
59.381
50.000
0.00
0.00
35.91
3.62
8903
9681
0.396811
ACTTTGGAGTGGAGTTCCCG
59.603
55.000
0.00
0.00
37.93
5.14
8905
9683
1.621814
CTTTGGAGTGGAGTTCCCGTA
59.378
52.381
0.00
0.00
37.93
4.02
9180
10061
2.347490
GCAGAAGCCGGAACCAGA
59.653
61.111
5.05
0.00
33.58
3.86
9181
10062
1.302511
GCAGAAGCCGGAACCAGAA
60.303
57.895
5.05
0.00
33.58
3.02
9182
10063
1.301677
GCAGAAGCCGGAACCAGAAG
61.302
60.000
5.05
0.00
33.58
2.85
9183
10064
0.674895
CAGAAGCCGGAACCAGAAGG
60.675
60.000
5.05
0.00
42.21
3.46
9186
10067
4.344865
GCCGGAACCAGAAGGCCA
62.345
66.667
5.05
0.00
43.54
5.36
9187
10068
2.045926
CCGGAACCAGAAGGCCAG
60.046
66.667
5.01
0.00
39.06
4.85
9188
10069
2.592993
CCGGAACCAGAAGGCCAGA
61.593
63.158
5.01
0.00
39.06
3.86
9189
10070
1.374947
CGGAACCAGAAGGCCAGAA
59.625
57.895
5.01
0.00
39.06
3.02
9190
10071
0.250727
CGGAACCAGAAGGCCAGAAA
60.251
55.000
5.01
0.00
39.06
2.52
9191
10072
1.248486
GGAACCAGAAGGCCAGAAAC
58.752
55.000
5.01
0.00
39.06
2.78
9214
10095
2.507769
TGATCTGCACAGCTCGCG
60.508
61.111
0.00
0.00
0.00
5.87
9228
10109
3.539107
CGCGCGGTAGGAAACGAC
61.539
66.667
24.84
0.00
34.90
4.34
9237
10118
4.373771
GGAAACGACGCCTTTCCT
57.626
55.556
18.05
0.00
42.41
3.36
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
30
31
5.492524
TCCTCTAGGATCACCCAAAAAGATT
59.507
40.000
0.00
0.00
39.78
2.40
31
32
5.039645
TCCTCTAGGATCACCCAAAAAGAT
58.960
41.667
0.00
0.00
39.78
2.40
32
33
4.435137
TCCTCTAGGATCACCCAAAAAGA
58.565
43.478
0.00
0.00
39.78
2.52
48
49
1.203087
TGACGACCCTTGGTTCCTCTA
60.203
52.381
0.00
0.00
35.25
2.43
50
51
0.613777
ATGACGACCCTTGGTTCCTC
59.386
55.000
0.00
0.00
35.25
3.71
54
55
2.358322
ACAAATGACGACCCTTGGTT
57.642
45.000
0.00
0.00
35.25
3.67
64
65
9.702726
CTTATTGTACCTTCATAACAAATGACG
57.297
33.333
0.00
0.00
36.75
4.35
101
103
1.228552
GGTGCTTCAAGGCCCTTCA
60.229
57.895
0.00
0.00
0.00
3.02
110
112
2.136298
TGAAAGTGTGGGTGCTTCAA
57.864
45.000
0.00
0.00
0.00
2.69
116
118
5.163513
GCTTATTCAATGAAAGTGTGGGTG
58.836
41.667
0.00
0.00
31.21
4.61
122
124
5.688823
TGTCGTGCTTATTCAATGAAAGTG
58.311
37.500
0.00
0.00
0.00
3.16
127
129
6.976636
TGTATTGTCGTGCTTATTCAATGA
57.023
33.333
0.00
0.00
32.27
2.57
141
143
8.980610
TGGTTACCGATATAATTTGTATTGTCG
58.019
33.333
0.00
0.00
0.00
4.35
169
171
7.119846
GGACTAGCTTGCATTTTCTCTTTTCTA
59.880
37.037
0.00
0.00
0.00
2.10
171
173
6.072230
AGGACTAGCTTGCATTTTCTCTTTTC
60.072
38.462
0.00
0.00
0.00
2.29
214
216
4.084693
CGGTTTTACTTTCTGACCTCGAAC
60.085
45.833
0.00
0.00
0.00
3.95
216
218
3.645884
CGGTTTTACTTTCTGACCTCGA
58.354
45.455
0.00
0.00
0.00
4.04
283
285
3.010314
TGGTTTATCCCCGGCGGT
61.010
61.111
26.32
9.22
34.77
5.68
286
288
1.035385
CCAAGTGGTTTATCCCCGGC
61.035
60.000
0.00
0.00
34.77
6.13
317
319
1.998444
CTGGTGGATATGGGGCAGCA
61.998
60.000
0.00
0.00
0.00
4.41
343
345
2.047274
CTTCTTCCTTCGCCGCCA
60.047
61.111
0.00
0.00
0.00
5.69
365
367
2.890945
TGTATCTAGCATTAGCCGAGCA
59.109
45.455
0.00
0.00
43.56
4.26
414
420
1.202348
CGTCATCAGCTCCGTCATTCT
60.202
52.381
0.00
0.00
0.00
2.40
460
467
5.189145
TCATAGTTGTTCCCCTACTTCTTCC
59.811
44.000
0.00
0.00
31.40
3.46
527
537
3.329889
TGCTCATCGGTGCCCCTT
61.330
61.111
0.00
0.00
32.64
3.95
528
539
4.101448
GTGCTCATCGGTGCCCCT
62.101
66.667
0.00
0.00
32.64
4.79
541
552
2.281761
CCGAGGTGCTTTGGTGCT
60.282
61.111
0.00
0.00
0.00
4.40
552
563
2.600769
AAGAGCGTCCACCGAGGT
60.601
61.111
0.00
0.00
39.56
3.85
557
568
0.798776
CATCAACAAGAGCGTCCACC
59.201
55.000
0.00
0.00
0.00
4.61
571
582
1.748493
GCAATTCCTTACCCGCATCAA
59.252
47.619
0.00
0.00
0.00
2.57
578
589
2.014594
CGAGCGCAATTCCTTACCC
58.985
57.895
11.47
0.00
0.00
3.69
636
647
4.467084
GGCCGCCGTGATGGAGAA
62.467
66.667
0.00
0.00
40.56
2.87
662
673
4.314522
TGAAGATAATGAGTTTGCCCCA
57.685
40.909
0.00
0.00
0.00
4.96
717
734
2.496817
GCTGGAGCCGAAGACGAT
59.503
61.111
0.00
0.00
42.66
3.73
738
755
1.645034
CTCTTACATGTGGTGCTCCG
58.355
55.000
9.11
0.00
36.30
4.63
793
810
2.335681
TACCAGAGGGGATTGTGTCA
57.664
50.000
0.00
0.00
41.15
3.58
885
902
1.839994
CAGCTGGAGATGGTTAGGGAA
59.160
52.381
5.57
0.00
0.00
3.97
918
935
0.179045
GGCCGATCACATACCTTGCT
60.179
55.000
0.00
0.00
0.00
3.91
919
936
1.498865
CGGCCGATCACATACCTTGC
61.499
60.000
24.07
0.00
0.00
4.01
925
942
2.123208
TCCCCGGCCGATCACATA
60.123
61.111
30.73
0.92
0.00
2.29
938
955
0.405973
AGAGTTTCCTTTGGCTCCCC
59.594
55.000
0.00
0.00
0.00
4.81
947
964
1.694696
AGCTCCGTTGAGAGTTTCCTT
59.305
47.619
0.00
0.00
41.42
3.36
952
969
3.422796
TCTAGAAGCTCCGTTGAGAGTT
58.577
45.455
0.00
0.00
41.42
3.01
968
985
5.015817
ACTTTCTTCCCTCTCTCCTTCTAGA
59.984
44.000
0.00
0.00
0.00
2.43
970
987
5.020132
CACTTTCTTCCCTCTCTCCTTCTA
58.980
45.833
0.00
0.00
0.00
2.10
983
1000
4.339530
GGCCCATTCTTATCACTTTCTTCC
59.660
45.833
0.00
0.00
0.00
3.46
988
1005
2.587307
AGGGGCCCATTCTTATCACTTT
59.413
45.455
27.72
0.00
0.00
2.66
1032
1049
9.634021
TTTATGGGGAAAAGCAAATTTAAAACT
57.366
25.926
0.00
0.00
0.00
2.66
1045
1062
7.346471
TCTCATAGGAGTTTTATGGGGAAAAG
58.654
38.462
4.02
0.00
42.05
2.27
1050
1074
7.560796
AGTATCTCATAGGAGTTTTATGGGG
57.439
40.000
4.02
0.00
42.05
4.96
1087
1111
9.979578
TGAATCTTTTGTTATTGTTGTGCTATT
57.020
25.926
0.00
0.00
0.00
1.73
1106
1409
8.827832
TGTTATTGATTTCCTCCATGAATCTT
57.172
30.769
0.00
0.00
32.41
2.40
1112
1415
6.780457
ACCTTGTTATTGATTTCCTCCATG
57.220
37.500
0.00
0.00
0.00
3.66
1159
1462
6.255215
ACTCGAAAACATAAAATACATGCCG
58.745
36.000
0.00
0.00
0.00
5.69
1160
1463
7.968405
AGAACTCGAAAACATAAAATACATGCC
59.032
33.333
0.00
0.00
0.00
4.40
1179
1482
1.801178
GAGGGAACTTGCAAGAACTCG
59.199
52.381
32.50
6.51
44.43
4.18
1200
1503
2.318908
TGATGGTTGCTTCAAGGCTTT
58.681
42.857
0.00
0.00
0.00
3.51
1205
1508
3.256383
TGTGGATTGATGGTTGCTTCAAG
59.744
43.478
0.00
0.00
35.47
3.02
1208
1511
2.557924
TGTGTGGATTGATGGTTGCTTC
59.442
45.455
0.00
0.00
0.00
3.86
1244
1547
8.669243
AGAAATGCTTGCTAAATCTTACTACAC
58.331
33.333
0.00
0.00
0.00
2.90
1248
1551
9.061435
GGATAGAAATGCTTGCTAAATCTTACT
57.939
33.333
0.00
0.00
0.00
2.24
1274
1577
1.063469
ACCGAAACACGAGTTGCAAAG
59.937
47.619
0.00
0.00
45.77
2.77
1279
1582
0.433492
CGCTACCGAAACACGAGTTG
59.567
55.000
0.00
0.00
45.77
3.16
1280
1583
0.031178
ACGCTACCGAAACACGAGTT
59.969
50.000
0.00
0.00
45.77
3.01
1295
1600
1.344763
GGCTATGATTGGTAGGACGCT
59.655
52.381
0.00
0.00
0.00
5.07
1296
1601
1.797025
GGCTATGATTGGTAGGACGC
58.203
55.000
0.00
0.00
0.00
5.19
1299
1604
2.673258
TGACGGCTATGATTGGTAGGA
58.327
47.619
0.00
0.00
0.00
2.94
1306
1611
5.614308
TCATTCAGATTGACGGCTATGATT
58.386
37.500
0.00
0.00
0.00
2.57
1321
1626
9.449719
CATCCATGAGAATTATCATCATTCAGA
57.550
33.333
12.58
4.30
37.84
3.27
1323
1628
7.888546
AGCATCCATGAGAATTATCATCATTCA
59.111
33.333
12.58
0.00
37.84
2.57
1344
1649
7.659652
AAGTCAAAAACTCTACTGTAGCATC
57.340
36.000
9.98
0.00
37.17
3.91
1351
1656
7.072030
CGGATGAAAAGTCAAAAACTCTACTG
58.928
38.462
0.00
0.00
37.17
2.74
1355
1660
4.554723
CGCGGATGAAAAGTCAAAAACTCT
60.555
41.667
0.00
0.00
37.17
3.24
1356
1661
3.664025
CGCGGATGAAAAGTCAAAAACTC
59.336
43.478
0.00
0.00
37.17
3.01
1357
1662
3.550030
CCGCGGATGAAAAGTCAAAAACT
60.550
43.478
24.07
0.00
41.10
2.66
1358
1663
2.724174
CCGCGGATGAAAAGTCAAAAAC
59.276
45.455
24.07
0.00
37.30
2.43
1359
1664
2.359531
ACCGCGGATGAAAAGTCAAAAA
59.640
40.909
35.90
0.00
37.30
1.94
1360
1665
1.950909
ACCGCGGATGAAAAGTCAAAA
59.049
42.857
35.90
0.00
37.30
2.44
1361
1666
1.265635
CACCGCGGATGAAAAGTCAAA
59.734
47.619
35.90
0.00
37.30
2.69
1363
1668
0.953471
CCACCGCGGATGAAAAGTCA
60.953
55.000
35.90
0.00
38.41
3.41
1364
1669
0.953960
ACCACCGCGGATGAAAAGTC
60.954
55.000
35.90
0.00
38.63
3.01
1365
1670
0.536460
AACCACCGCGGATGAAAAGT
60.536
50.000
35.90
15.51
38.63
2.66
1366
1671
0.596082
AAACCACCGCGGATGAAAAG
59.404
50.000
35.90
14.89
38.63
2.27
1418
1724
3.571828
TGAACATTTGAATTCAAGCCCGA
59.428
39.130
19.64
6.48
37.15
5.14
1435
1741
2.967599
ATGCTCGCTACAGATGAACA
57.032
45.000
0.00
0.00
0.00
3.18
1436
1742
4.566759
TGTTTATGCTCGCTACAGATGAAC
59.433
41.667
0.00
0.00
0.00
3.18
1449
1755
5.863935
GGTGAGAAAAATGGTGTTTATGCTC
59.136
40.000
0.00
0.00
0.00
4.26
1453
1759
6.208599
ACATCGGTGAGAAAAATGGTGTTTAT
59.791
34.615
0.65
0.00
0.00
1.40
1525
1840
1.644786
GAACGGTGGTACTGCATGGC
61.645
60.000
0.00
0.00
0.00
4.40
1560
1878
2.491022
GGCCTCGTATCCTCTGCGT
61.491
63.158
0.00
0.00
34.27
5.24
1703
2021
2.409975
GACAGAATCCGGACAAAACGA
58.590
47.619
6.12
0.00
0.00
3.85
1755
2073
4.082523
CCGCATCCCAGGACACGT
62.083
66.667
8.79
0.00
0.00
4.49
1941
2272
8.282256
AGGAAGCAGTTATGGAAATTAGGTATT
58.718
33.333
0.00
0.00
0.00
1.89
1947
2278
7.175104
ACTCAAGGAAGCAGTTATGGAAATTA
58.825
34.615
0.00
0.00
0.00
1.40
1964
2295
1.628846
GGCTCTAACCCAACTCAAGGA
59.371
52.381
0.00
0.00
0.00
3.36
1981
2312
0.322975
ACAAGTGCATCGAGAAGGCT
59.677
50.000
0.00
0.00
0.00
4.58
2019
2389
1.118356
AGGAGGATGCCAGATCGACC
61.118
60.000
0.00
0.00
0.00
4.79
2020
2390
0.755686
AAGGAGGATGCCAGATCGAC
59.244
55.000
0.00
0.00
0.00
4.20
2021
2391
1.414181
GAAAGGAGGATGCCAGATCGA
59.586
52.381
0.00
0.00
0.00
3.59
2022
2392
1.415659
AGAAAGGAGGATGCCAGATCG
59.584
52.381
0.00
0.00
0.00
3.69
2023
2393
3.136260
AGAAGAAAGGAGGATGCCAGATC
59.864
47.826
0.00
0.00
0.00
2.75
2024
2394
3.121688
AGAAGAAAGGAGGATGCCAGAT
58.878
45.455
0.00
0.00
0.00
2.90
2025
2395
2.555664
AGAAGAAAGGAGGATGCCAGA
58.444
47.619
0.00
0.00
0.00
3.86
2026
2396
3.277715
GAAGAAGAAAGGAGGATGCCAG
58.722
50.000
0.00
0.00
0.00
4.85
2027
2397
2.644299
TGAAGAAGAAAGGAGGATGCCA
59.356
45.455
0.00
0.00
0.00
4.92
2028
2398
3.356529
TGAAGAAGAAAGGAGGATGCC
57.643
47.619
0.00
0.00
0.00
4.40
2029
2399
3.128415
GCTTGAAGAAGAAAGGAGGATGC
59.872
47.826
0.00
0.00
0.00
3.91
2030
2400
4.587891
AGCTTGAAGAAGAAAGGAGGATG
58.412
43.478
0.00
0.00
0.00
3.51
2031
2401
4.925390
AGCTTGAAGAAGAAAGGAGGAT
57.075
40.909
0.00
0.00
0.00
3.24
2032
2402
5.087323
TCTAGCTTGAAGAAGAAAGGAGGA
58.913
41.667
0.00
0.00
0.00
3.71
2033
2403
5.413309
TCTAGCTTGAAGAAGAAAGGAGG
57.587
43.478
0.00
0.00
0.00
4.30
2041
2411
3.186119
CGAGCCTTCTAGCTTGAAGAAG
58.814
50.000
31.32
23.33
45.70
2.85
2042
2412
3.238108
CGAGCCTTCTAGCTTGAAGAA
57.762
47.619
31.32
16.43
45.70
2.52
2043
2413
2.949451
CGAGCCTTCTAGCTTGAAGA
57.051
50.000
31.32
9.89
45.70
2.87
2047
2417
3.308323
GTCAAATCGAGCCTTCTAGCTTG
59.692
47.826
0.00
0.00
45.15
4.01
2048
2418
3.055819
TGTCAAATCGAGCCTTCTAGCTT
60.056
43.478
0.00
0.00
45.15
3.74
2050
2420
2.893637
TGTCAAATCGAGCCTTCTAGC
58.106
47.619
0.00
0.00
0.00
3.42
2051
2421
4.686972
TGATGTCAAATCGAGCCTTCTAG
58.313
43.478
0.00
0.00
0.00
2.43
2052
2422
4.736126
TGATGTCAAATCGAGCCTTCTA
57.264
40.909
0.00
0.00
0.00
2.10
2053
2423
3.616956
TGATGTCAAATCGAGCCTTCT
57.383
42.857
0.00
0.00
0.00
2.85
2054
2424
3.249559
GGATGATGTCAAATCGAGCCTTC
59.750
47.826
0.00
0.00
0.00
3.46
2055
2425
3.118112
AGGATGATGTCAAATCGAGCCTT
60.118
43.478
0.00
0.00
0.00
4.35
2065
2435
6.072286
GCTTGAAGAAGAAAGGATGATGTCAA
60.072
38.462
0.00
0.00
0.00
3.18
2068
2438
4.704057
GGCTTGAAGAAGAAAGGATGATGT
59.296
41.667
0.00
0.00
0.00
3.06
2073
2443
2.305927
TCCGGCTTGAAGAAGAAAGGAT
59.694
45.455
0.00
0.00
0.00
3.24
2130
2566
7.766278
CACTTGTTGTTAGATTAGAGGCTACAT
59.234
37.037
0.00
0.00
0.00
2.29
2132
2568
6.036191
GCACTTGTTGTTAGATTAGAGGCTAC
59.964
42.308
0.00
0.00
0.00
3.58
2447
2886
4.710695
TCGTCGGCGCATCGTTGT
62.711
61.111
10.83
0.00
38.14
3.32
2467
2906
2.639327
GCTCGGTGCTTGCCCAAAT
61.639
57.895
0.00
0.00
38.95
2.32
2562
3002
2.993264
GCAAGGCCACATGCAGGT
60.993
61.111
19.61
0.00
43.89
4.00
2588
3028
2.764128
CCTCGCTGGAAGGCCCTA
60.764
66.667
0.00
0.00
38.35
3.53
2690
3130
2.906897
CACCTGGTTTGCGCACCT
60.907
61.111
11.12
0.00
37.75
4.00
2751
3191
2.126812
GTTCAGACGCGAGCTCGT
60.127
61.111
34.46
19.03
46.38
4.18
2799
3248
0.832135
TCCACTCTTTCCCTCGCTGT
60.832
55.000
0.00
0.00
0.00
4.40
2809
3278
2.895424
CGCACCCCCTCCACTCTTT
61.895
63.158
0.00
0.00
0.00
2.52
2888
3358
1.073199
CTTTGCGTGTCCTCCCCTT
59.927
57.895
0.00
0.00
0.00
3.95
2964
3434
2.435938
GCTTTCGACCCATCCGCA
60.436
61.111
0.00
0.00
0.00
5.69
3013
3483
3.825160
AAAACAGCCCAGCGAGCGA
62.825
57.895
0.00
0.00
34.64
4.93
3046
3518
0.604578
CCGACCCCGTCTGTTTAAGA
59.395
55.000
0.00
0.00
0.00
2.10
3048
3520
0.318120
GTCCGACCCCGTCTGTTTAA
59.682
55.000
0.00
0.00
0.00
1.52
3054
3526
0.033796
TATTCTGTCCGACCCCGTCT
60.034
55.000
0.00
0.00
0.00
4.18
3070
3542
0.456221
CTCCACCACGCGACTCTATT
59.544
55.000
15.93
0.00
0.00
1.73
3075
3547
2.029073
CAACTCCACCACGCGACT
59.971
61.111
15.93
0.00
0.00
4.18
3164
3636
2.612251
CTCTCCCCCTCTCCCCTC
59.388
72.222
0.00
0.00
0.00
4.30
3190
3662
1.521681
GGGTACGACTGATGCTGCC
60.522
63.158
0.00
0.00
0.00
4.85
3212
3699
1.153628
GTACTGGTACTGGCGCTGG
60.154
63.158
7.64
2.58
33.45
4.85
3213
3700
1.153628
GGTACTGGTACTGGCGCTG
60.154
63.158
7.64
2.99
36.36
5.18
3214
3701
2.707849
CGGTACTGGTACTGGCGCT
61.708
63.158
7.64
0.00
38.46
5.92
3215
3702
2.202703
CGGTACTGGTACTGGCGC
60.203
66.667
0.00
0.00
38.46
6.53
3216
3703
1.378882
TAGCGGTACTGGTACTGGCG
61.379
60.000
17.89
11.07
41.52
5.69
3217
3704
0.101939
GTAGCGGTACTGGTACTGGC
59.898
60.000
28.69
16.09
41.52
4.85
3356
3857
2.509561
GAGAGGGAAGGAACGCGC
60.510
66.667
5.73
0.00
0.00
6.86
3358
3859
2.509561
GCGAGAGGGAAGGAACGC
60.510
66.667
0.00
0.00
39.33
4.84
3359
3860
2.184579
GGCGAGAGGGAAGGAACG
59.815
66.667
0.00
0.00
0.00
3.95
3360
3861
2.585153
GGGCGAGAGGGAAGGAAC
59.415
66.667
0.00
0.00
0.00
3.62
3361
3862
2.687566
GGGGCGAGAGGGAAGGAA
60.688
66.667
0.00
0.00
0.00
3.36
3362
3863
3.684628
AGGGGCGAGAGGGAAGGA
61.685
66.667
0.00
0.00
0.00
3.36
3469
3990
0.107017
GGCTGGGATTAGCTGCTCAA
60.107
55.000
4.91
0.00
43.22
3.02
3470
3991
1.528824
GGCTGGGATTAGCTGCTCA
59.471
57.895
4.91
0.00
43.22
4.26
3471
3992
1.228094
GGGCTGGGATTAGCTGCTC
60.228
63.158
4.91
0.00
43.22
4.26
3472
3993
2.922234
GGGCTGGGATTAGCTGCT
59.078
61.111
7.57
7.57
43.22
4.24
3473
3994
2.592861
CGGGCTGGGATTAGCTGC
60.593
66.667
0.00
0.00
43.22
5.25
3523
4263
4.332543
AAGAGCGGGTGGGAGGGA
62.333
66.667
0.00
0.00
0.00
4.20
3526
4266
3.358076
GACGAAGAGCGGGTGGGAG
62.358
68.421
0.00
0.00
46.49
4.30
3527
4267
3.379445
GACGAAGAGCGGGTGGGA
61.379
66.667
0.00
0.00
46.49
4.37
3530
4270
2.202492
CGAGACGAAGAGCGGGTG
60.202
66.667
0.00
0.00
46.49
4.61
3531
4271
3.441290
CCGAGACGAAGAGCGGGT
61.441
66.667
0.00
0.00
46.49
5.28
3532
4272
4.856607
GCCGAGACGAAGAGCGGG
62.857
72.222
0.00
0.00
46.49
6.13
3533
4273
3.743091
GAGCCGAGACGAAGAGCGG
62.743
68.421
0.00
0.00
46.49
5.52
3535
4275
2.054140
ATCGAGCCGAGACGAAGAGC
62.054
60.000
0.00
0.00
39.91
4.09
3676
4424
2.746277
CCCGCGGAGAAAACAGGG
60.746
66.667
30.73
0.44
0.00
4.45
3842
4599
1.604147
TTCTCCTTCGGATCTGCGCA
61.604
55.000
10.98
10.98
0.00
6.09
3844
4601
0.528684
GGTTCTCCTTCGGATCTGCG
60.529
60.000
0.00
0.00
0.00
5.18
3934
4691
0.179062
GCTGGATCTGGTGCAGGTAG
60.179
60.000
11.54
0.00
45.55
3.18
4159
4922
4.259131
TGCTGCTGCTGCTGGTGA
62.259
61.111
27.67
8.50
40.48
4.02
4228
4991
3.314331
CTCAGGTCACCGGCACCT
61.314
66.667
18.27
18.27
45.89
4.00
4300
5063
2.231721
AGGCGAAGAAGACAAGGTAGTC
59.768
50.000
0.00
0.00
38.81
2.59
4356
5119
1.414550
GAACCCTCTTGCTAGGCCTAG
59.585
57.143
32.12
32.12
35.09
3.02
4631
5394
8.074972
GCAAAGAATCATGCCACAAAAATTTTA
58.925
29.630
3.34
0.00
36.56
1.52
4635
5398
5.310451
AGCAAAGAATCATGCCACAAAAAT
58.690
33.333
7.30
0.00
43.57
1.82
4697
5460
0.107831
ACACACACCATAGCAACCGT
59.892
50.000
0.00
0.00
0.00
4.83
4698
5461
2.087501
TACACACACCATAGCAACCG
57.912
50.000
0.00
0.00
0.00
4.44
4700
5463
3.128589
CCCAATACACACACCATAGCAAC
59.871
47.826
0.00
0.00
0.00
4.17
4702
5465
2.943646
GCCCAATACACACACCATAGCA
60.944
50.000
0.00
0.00
0.00
3.49
4703
5466
1.676006
GCCCAATACACACACCATAGC
59.324
52.381
0.00
0.00
0.00
2.97
4704
5467
2.297701
GGCCCAATACACACACCATAG
58.702
52.381
0.00
0.00
0.00
2.23
4705
5468
1.636003
TGGCCCAATACACACACCATA
59.364
47.619
0.00
0.00
0.00
2.74
4706
5469
0.407528
TGGCCCAATACACACACCAT
59.592
50.000
0.00
0.00
0.00
3.55
4707
5470
0.251121
CTGGCCCAATACACACACCA
60.251
55.000
0.00
0.00
0.00
4.17
4708
5471
0.037590
TCTGGCCCAATACACACACC
59.962
55.000
0.00
0.00
0.00
4.16
4753
5516
1.883275
CTCGGCCTACATAGAGACCAG
59.117
57.143
0.00
0.00
32.84
4.00
4770
5533
9.530129
CAACTTTTAGTAACTAAAATGCTCTCG
57.470
33.333
0.00
0.00
42.53
4.04
4931
5694
5.413309
TTTTCTTGGTTTTCAGGAAGCAA
57.587
34.783
2.80
2.80
41.48
3.91
5039
5802
2.977405
ATCAACAAGTGAAAGAGCGC
57.023
45.000
0.00
0.00
40.50
5.92
5082
5846
1.073964
CACCTGTCAATGCAGAGACG
58.926
55.000
14.35
10.00
38.70
4.18
5526
6290
4.319177
GCTGCTTATATACTTCAGGTGGG
58.681
47.826
0.00
0.00
0.00
4.61
5832
6596
2.706890
GTTGGCCGTTCTGAATCCTTA
58.293
47.619
0.00
0.00
0.00
2.69
5862
6626
0.263172
ATGTGGGGTTTGGTGGTGAA
59.737
50.000
0.00
0.00
0.00
3.18
5883
6647
6.093082
CAGATGTTGAAGCATAACATGACTGA
59.907
38.462
15.10
0.00
45.82
3.41
5913
6677
3.534554
TGATGTTGATGGAGAATGGTCG
58.465
45.455
0.00
0.00
0.00
4.79
5972
6736
6.088824
GGCTTGTGACATAATCAACTGAAAG
58.911
40.000
0.00
0.00
39.72
2.62
6003
6767
7.642194
TGAAAGCGCATCTAAAATAATAAACGG
59.358
33.333
11.47
0.00
0.00
4.44
6044
6808
9.020731
AGTACGATCCTACAAAATGGAAAATTT
57.979
29.630
4.93
0.00
35.81
1.82
6370
7134
6.895607
CAACAATTCTATTGCATGCATTCA
57.104
33.333
23.37
7.20
0.00
2.57
6405
7169
6.914215
AGCTGCATTAAAAATCATACGATGTG
59.086
34.615
1.02
0.00
30.13
3.21
6431
7195
2.819608
TCGCTGGAGGAAATTTTCTTGG
59.180
45.455
0.00
0.00
0.00
3.61
6432
7196
3.503748
ACTCGCTGGAGGAAATTTTCTTG
59.496
43.478
0.00
0.00
44.93
3.02
6603
7367
9.625747
AAAACAAATTCATAGTCAAAACCCATT
57.374
25.926
0.00
0.00
0.00
3.16
6861
7625
3.324117
CAGTGGATCCTGCATAGATTCG
58.676
50.000
14.23
0.00
0.00
3.34
7105
7869
1.792949
CTGTTCTCAACCTGCACGTAC
59.207
52.381
0.00
0.00
0.00
3.67
7417
8181
1.220749
GCACCAGTCCCGCTCATTA
59.779
57.895
0.00
0.00
0.00
1.90
7891
8655
2.270352
ATGAGCCGTTGTTCCTGAAA
57.730
45.000
0.00
0.00
0.00
2.69
7993
8757
1.745087
CCAACATTCCCTGGTTGATCG
59.255
52.381
6.12
0.00
45.50
3.69
8315
9079
0.250770
GTTCCACACCCTCTGGTTCC
60.251
60.000
0.00
0.00
44.75
3.62
8368
9132
3.837578
CATGTCCATGGGCAGAGC
58.162
61.111
25.65
3.10
35.24
4.09
8430
9194
8.040002
TGATTATCCCCACATATCAACACTTA
57.960
34.615
0.00
0.00
0.00
2.24
8480
9248
3.092301
CTCCAATCCCCCTTTTCTTGAC
58.908
50.000
0.00
0.00
0.00
3.18
8770
9543
2.607187
CCTGCTACCGTCTAAACACAG
58.393
52.381
0.00
0.00
0.00
3.66
8887
9665
0.971386
GTACGGGAACTCCACTCCAA
59.029
55.000
0.00
0.00
37.91
3.53
8888
9666
0.113776
AGTACGGGAACTCCACTCCA
59.886
55.000
0.00
0.00
37.91
3.86
8889
9667
0.531200
CAGTACGGGAACTCCACTCC
59.469
60.000
0.00
0.00
37.91
3.85
8890
9668
1.254954
ACAGTACGGGAACTCCACTC
58.745
55.000
0.00
0.00
37.91
3.51
8891
9669
1.713297
AACAGTACGGGAACTCCACT
58.287
50.000
0.00
0.00
37.91
4.00
8892
9670
2.538512
AAACAGTACGGGAACTCCAC
57.461
50.000
0.00
0.00
37.91
4.02
8901
9679
4.935808
AGGCTTTCTATCAAAACAGTACGG
59.064
41.667
0.00
0.00
0.00
4.02
8903
9681
5.123979
CCCAGGCTTTCTATCAAAACAGTAC
59.876
44.000
0.00
0.00
0.00
2.73
8905
9683
4.082125
CCCAGGCTTTCTATCAAAACAGT
58.918
43.478
0.00
0.00
0.00
3.55
8938
9717
4.059511
CAAGGAAATGCATGCACAGAAAA
58.940
39.130
25.37
0.00
0.00
2.29
9175
10056
0.535102
CGTGTTTCTGGCCTTCTGGT
60.535
55.000
3.32
0.00
35.27
4.00
9180
10061
2.203153
ACGCGTGTTTCTGGCCTT
60.203
55.556
12.93
0.00
0.00
4.35
9181
10062
2.731691
ATCACGCGTGTTTCTGGCCT
62.732
55.000
35.74
9.99
0.00
5.19
9182
10063
2.240612
GATCACGCGTGTTTCTGGCC
62.241
60.000
35.74
13.12
0.00
5.36
9183
10064
1.132640
GATCACGCGTGTTTCTGGC
59.867
57.895
35.74
13.82
0.00
4.85
9184
10065
0.439985
CAGATCACGCGTGTTTCTGG
59.560
55.000
38.11
28.37
37.79
3.86
9185
10066
0.179240
GCAGATCACGCGTGTTTCTG
60.179
55.000
39.54
39.54
40.92
3.02
9186
10067
0.599991
TGCAGATCACGCGTGTTTCT
60.600
50.000
35.74
31.78
0.00
2.52
9187
10068
0.451135
GTGCAGATCACGCGTGTTTC
60.451
55.000
35.74
30.35
35.76
2.78
9188
10069
1.569493
GTGCAGATCACGCGTGTTT
59.431
52.632
35.74
25.17
35.76
2.83
9189
10070
3.244105
GTGCAGATCACGCGTGTT
58.756
55.556
35.74
29.11
35.76
3.32
9214
10095
3.184003
GGCGTCGTTTCCTACCGC
61.184
66.667
0.00
0.00
43.35
5.68
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.