Multiple sequence alignment - TraesCS7A01G249000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G249000 chr7A 100.000 5623 0 0 1 5623 231079799 231085421 0.000000e+00 10384.0
1 TraesCS7A01G249000 chr7A 99.454 732 4 0 4892 5623 231092743 231093474 0.000000e+00 1330.0
2 TraesCS7A01G249000 chr7A 94.643 112 6 0 4056 4167 618680463 618680352 2.080000e-39 174.0
3 TraesCS7A01G249000 chr7A 90.625 128 9 3 4061 4187 431899012 431899137 3.480000e-37 167.0
4 TraesCS7A01G249000 chr7B 93.734 3144 156 21 279 3394 181411431 181408301 0.000000e+00 4676.0
5 TraesCS7A01G249000 chr7B 98.497 732 10 1 4892 5623 559619781 559619051 0.000000e+00 1290.0
6 TraesCS7A01G249000 chr7B 91.507 730 50 7 4165 4890 181407172 181406451 0.000000e+00 994.0
7 TraesCS7A01G249000 chr7B 90.980 643 36 6 3422 4064 181407788 181407168 0.000000e+00 846.0
8 TraesCS7A01G249000 chr7B 85.572 402 48 3 490 891 181422991 181422600 4.050000e-111 412.0
9 TraesCS7A01G249000 chr7B 100.000 29 0 0 3434 3462 478482275 478482247 3.000000e-03 54.7
10 TraesCS7A01G249000 chr7D 94.845 2483 83 16 1616 4064 218468748 218471219 0.000000e+00 3834.0
11 TraesCS7A01G249000 chr7D 93.800 1242 69 6 384 1624 218467457 218468691 0.000000e+00 1860.0
12 TraesCS7A01G249000 chr7D 97.662 727 13 3 4165 4890 218471215 218471938 0.000000e+00 1245.0
13 TraesCS7A01G249000 chr7D 86.397 272 33 4 12 281 486572573 486572304 1.530000e-75 294.0
14 TraesCS7A01G249000 chr7D 95.690 116 4 1 4059 4173 419562442 419562327 9.620000e-43 185.0
15 TraesCS7A01G249000 chr7D 92.683 41 2 1 3423 3462 165657852 165657892 2.190000e-04 58.4
16 TraesCS7A01G249000 chr6B 98.497 732 10 1 4892 5623 393046790 393046060 0.000000e+00 1290.0
17 TraesCS7A01G249000 chr6B 96.970 33 1 0 3430 3462 139885301 139885269 7.870000e-04 56.5
18 TraesCS7A01G249000 chr2A 98.361 732 11 1 4892 5623 488422793 488422063 0.000000e+00 1284.0
19 TraesCS7A01G249000 chr4B 98.226 733 13 0 4891 5623 607790140 607789408 0.000000e+00 1282.0
20 TraesCS7A01G249000 chr4B 87.843 255 28 3 27 281 37684306 37684055 4.260000e-76 296.0
21 TraesCS7A01G249000 chrUn 98.224 732 13 0 4892 5623 299848323 299847592 0.000000e+00 1280.0
22 TraesCS7A01G249000 chrUn 98.224 732 13 0 4892 5623 299885520 299886251 0.000000e+00 1280.0
23 TraesCS7A01G249000 chrUn 98.224 732 13 0 4892 5623 300573382 300574113 0.000000e+00 1280.0
24 TraesCS7A01G249000 chrUn 98.224 732 13 0 4892 5623 330089917 330089186 0.000000e+00 1280.0
25 TraesCS7A01G249000 chr3A 88.502 287 25 6 1 281 269242008 269242292 1.940000e-89 340.0
26 TraesCS7A01G249000 chr3A 85.563 284 35 4 1 281 85543198 85542918 5.510000e-75 292.0
27 TraesCS7A01G249000 chr3A 85.159 283 38 4 1 281 85474322 85474042 2.560000e-73 287.0
28 TraesCS7A01G249000 chr3A 93.220 118 8 0 4060 4177 59517193 59517076 2.080000e-39 174.0
29 TraesCS7A01G249000 chr5D 88.971 272 28 2 9 279 420647671 420647941 9.030000e-88 335.0
30 TraesCS7A01G249000 chr5D 92.308 39 0 1 3427 3462 294637665 294637703 1.000000e-02 52.8
31 TraesCS7A01G249000 chr5A 88.192 271 29 3 12 281 355027399 355027131 2.530000e-83 320.0
32 TraesCS7A01G249000 chr5A 95.614 114 5 0 4058 4171 505508730 505508843 3.460000e-42 183.0
33 TraesCS7A01G249000 chr5A 94.690 113 6 0 4055 4167 591435001 591434889 5.790000e-40 176.0
34 TraesCS7A01G249000 chr5A 92.437 119 9 0 4050 4168 69844777 69844895 2.690000e-38 171.0
35 TraesCS7A01G249000 chr3D 87.179 273 27 6 12 278 170928854 170928584 2.550000e-78 303.0
36 TraesCS7A01G249000 chr3D 84.146 82 8 5 1705 1784 20018750 20018828 2.170000e-09 75.0
37 TraesCS7A01G249000 chr6D 83.237 346 36 11 4269 4611 292864106 292863780 1.180000e-76 298.0
38 TraesCS7A01G249000 chr6D 96.970 33 1 0 3430 3462 65053188 65053156 7.870000e-04 56.5
39 TraesCS7A01G249000 chr2D 85.409 281 35 6 1 278 9365936 9366213 2.560000e-73 287.0
40 TraesCS7A01G249000 chr6A 81.287 342 36 11 4364 4702 428261195 428261511 9.350000e-63 252.0
41 TraesCS7A01G249000 chr6A 90.184 163 12 2 4732 4890 428274146 428274308 5.710000e-50 209.0
42 TraesCS7A01G249000 chr4A 95.652 115 4 1 4055 4168 327750642 327750528 3.460000e-42 183.0
43 TraesCS7A01G249000 chr4A 92.437 119 9 0 4049 4167 58915067 58915185 2.690000e-38 171.0
44 TraesCS7A01G249000 chr1B 84.000 100 8 4 3427 3520 15881530 15881627 7.760000e-14 89.8
45 TraesCS7A01G249000 chr5B 94.444 36 2 0 3427 3462 544796677 544796712 7.870000e-04 56.5
46 TraesCS7A01G249000 chr1A 96.970 33 1 0 3430 3462 27362028 27361996 7.870000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G249000 chr7A 231079799 231085421 5622 False 10384 10384 100.000000 1 5623 1 chr7A.!!$F1 5622
1 TraesCS7A01G249000 chr7A 231092743 231093474 731 False 1330 1330 99.454000 4892 5623 1 chr7A.!!$F2 731
2 TraesCS7A01G249000 chr7B 181406451 181411431 4980 True 2172 4676 92.073667 279 4890 3 chr7B.!!$R4 4611
3 TraesCS7A01G249000 chr7B 559619051 559619781 730 True 1290 1290 98.497000 4892 5623 1 chr7B.!!$R3 731
4 TraesCS7A01G249000 chr7D 218467457 218471938 4481 False 2313 3834 95.435667 384 4890 3 chr7D.!!$F2 4506
5 TraesCS7A01G249000 chr6B 393046060 393046790 730 True 1290 1290 98.497000 4892 5623 1 chr6B.!!$R2 731
6 TraesCS7A01G249000 chr2A 488422063 488422793 730 True 1284 1284 98.361000 4892 5623 1 chr2A.!!$R1 731
7 TraesCS7A01G249000 chr4B 607789408 607790140 732 True 1282 1282 98.226000 4891 5623 1 chr4B.!!$R2 732
8 TraesCS7A01G249000 chrUn 299847592 299848323 731 True 1280 1280 98.224000 4892 5623 1 chrUn.!!$R1 731
9 TraesCS7A01G249000 chrUn 299885520 299886251 731 False 1280 1280 98.224000 4892 5623 1 chrUn.!!$F1 731
10 TraesCS7A01G249000 chrUn 300573382 300574113 731 False 1280 1280 98.224000 4892 5623 1 chrUn.!!$F2 731
11 TraesCS7A01G249000 chrUn 330089186 330089917 731 True 1280 1280 98.224000 4892 5623 1 chrUn.!!$R2 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.035152 ACATCAGCTCATTCCCGCAA 60.035 50.000 0.00 0.00 0.00 4.85 F
155 156 0.037232 ACTCCCAGCAAACTAGCGAC 60.037 55.000 0.00 0.00 40.15 5.19 F
163 164 0.038526 CAAACTAGCGACGTGGGACT 60.039 55.000 0.00 0.00 0.00 3.85 F
198 199 0.095935 CTCTCGCCTTTGCACGAATG 59.904 55.000 0.00 0.00 37.94 2.67 F
205 206 0.169672 CTTTGCACGAATGGGCTGAG 59.830 55.000 0.00 0.00 0.00 3.35 F
484 485 0.521735 CCGCCTCAGTTTTTAGTGGC 59.478 55.000 0.00 0.00 40.14 5.01 F
665 666 0.606401 ATGCGGGAGGTTTGAGTGTG 60.606 55.000 0.00 0.00 0.00 3.82 F
847 848 1.284297 GCAACATCTTGGCCAAACGC 61.284 55.000 20.91 11.59 0.00 4.84 F
2053 2150 2.032290 GGACTTTGTCGTTGTAGGTTGC 60.032 50.000 0.00 0.00 32.65 4.17 F
3552 4144 1.081509 GCAAAACCGCGAATGCTCA 60.082 52.632 8.23 0.00 39.65 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1860 1.593196 ACATGTGAACACACTTCCCG 58.407 50.000 9.83 0.00 45.05 5.14 R
2037 2134 1.134340 ACTGGCAACCTACAACGACAA 60.134 47.619 0.00 0.00 0.00 3.18 R
2080 2177 5.353111 TCAGTTGTCATGACTTCGTGTAAA 58.647 37.500 25.55 7.11 34.59 2.01 R
2940 3047 5.367060 ACAGGTAGAGGGCTTAAAAGGATAG 59.633 44.000 0.00 0.00 0.00 2.08 R
2953 3060 5.710099 TGATAAAGCAAAAACAGGTAGAGGG 59.290 40.000 0.00 0.00 0.00 4.30 R
3090 3197 3.321682 CAGGAATCCAGAACAGGCAAAAA 59.678 43.478 0.61 0.00 0.00 1.94 R
3280 3387 4.232221 AGCAAGAAATTTGAGACAATGCG 58.768 39.130 0.00 0.00 36.45 4.73 R
3541 4133 0.447406 TTCACCAATGAGCATTCGCG 59.553 50.000 0.00 0.00 45.49 5.87 R
3879 4471 0.440758 TTAACTTTCCGCATGCGACG 59.559 50.000 39.90 24.55 42.83 5.12 R
4860 5457 0.326264 GGTCCTCTGAACTGCCATGT 59.674 55.000 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.459232 TTAGACATCAGCTCATTCCCG 57.541 47.619 0.00 0.00 0.00 5.14
22 23 0.179062 AGACATCAGCTCATTCCCGC 60.179 55.000 0.00 0.00 0.00 6.13
23 24 0.462581 GACATCAGCTCATTCCCGCA 60.463 55.000 0.00 0.00 0.00 5.69
24 25 0.035152 ACATCAGCTCATTCCCGCAA 60.035 50.000 0.00 0.00 0.00 4.85
25 26 0.379669 CATCAGCTCATTCCCGCAAC 59.620 55.000 0.00 0.00 0.00 4.17
26 27 0.254178 ATCAGCTCATTCCCGCAACT 59.746 50.000 0.00 0.00 0.00 3.16
27 28 0.391661 TCAGCTCATTCCCGCAACTC 60.392 55.000 0.00 0.00 0.00 3.01
28 29 1.448540 AGCTCATTCCCGCAACTCG 60.449 57.895 0.00 0.00 38.08 4.18
29 30 3.093278 CTCATTCCCGCAACTCGC 58.907 61.111 0.00 0.00 36.73 5.03
46 47 2.787249 CGAAGCGTCATGGCAAGG 59.213 61.111 0.00 0.00 34.64 3.61
47 48 2.486966 GAAGCGTCATGGCAAGGC 59.513 61.111 0.00 0.00 34.64 4.35
48 49 3.386867 GAAGCGTCATGGCAAGGCG 62.387 63.158 12.89 12.89 34.64 5.52
64 65 4.715523 CGGGCGGCAAAGGAGGAA 62.716 66.667 12.47 0.00 0.00 3.36
65 66 3.062466 GGGCGGCAAAGGAGGAAC 61.062 66.667 12.47 0.00 0.00 3.62
66 67 3.431725 GGCGGCAAAGGAGGAACG 61.432 66.667 3.07 0.00 0.00 3.95
67 68 4.103103 GCGGCAAAGGAGGAACGC 62.103 66.667 0.00 0.00 40.19 4.84
68 69 3.788766 CGGCAAAGGAGGAACGCG 61.789 66.667 3.53 3.53 0.00 6.01
69 70 4.103103 GGCAAAGGAGGAACGCGC 62.103 66.667 5.73 0.00 0.00 6.86
70 71 4.445545 GCAAAGGAGGAACGCGCG 62.446 66.667 30.96 30.96 0.00 6.86
71 72 3.041940 CAAAGGAGGAACGCGCGT 61.042 61.111 32.73 32.73 0.00 6.01
72 73 3.041940 AAAGGAGGAACGCGCGTG 61.042 61.111 38.44 19.78 0.00 5.34
73 74 3.509137 AAAGGAGGAACGCGCGTGA 62.509 57.895 38.44 0.00 0.00 4.35
74 75 2.981977 AAAGGAGGAACGCGCGTGAA 62.982 55.000 38.44 0.00 0.00 3.18
75 76 2.781595 AAGGAGGAACGCGCGTGAAT 62.782 55.000 38.44 24.53 0.00 2.57
76 77 2.395690 GAGGAACGCGCGTGAATG 59.604 61.111 38.44 6.11 0.00 2.67
77 78 2.357034 AGGAACGCGCGTGAATGT 60.357 55.556 38.44 21.45 0.00 2.71
78 79 2.095843 GGAACGCGCGTGAATGTC 59.904 61.111 38.44 28.17 0.00 3.06
79 80 2.380410 GGAACGCGCGTGAATGTCT 61.380 57.895 38.44 19.69 0.00 3.41
80 81 1.057361 GAACGCGCGTGAATGTCTC 59.943 57.895 38.44 24.04 0.00 3.36
81 82 1.344942 GAACGCGCGTGAATGTCTCT 61.345 55.000 38.44 17.94 0.00 3.10
82 83 1.344942 AACGCGCGTGAATGTCTCTC 61.345 55.000 38.44 0.00 0.00 3.20
83 84 1.515088 CGCGCGTGAATGTCTCTCT 60.515 57.895 24.19 0.00 0.00 3.10
84 85 1.073216 CGCGCGTGAATGTCTCTCTT 61.073 55.000 24.19 0.00 0.00 2.85
85 86 0.368227 GCGCGTGAATGTCTCTCTTG 59.632 55.000 8.43 0.00 0.00 3.02
86 87 1.702886 CGCGTGAATGTCTCTCTTGT 58.297 50.000 0.00 0.00 0.00 3.16
87 88 2.061773 CGCGTGAATGTCTCTCTTGTT 58.938 47.619 0.00 0.00 0.00 2.83
88 89 2.091277 CGCGTGAATGTCTCTCTTGTTC 59.909 50.000 0.00 0.00 0.00 3.18
89 90 3.321497 GCGTGAATGTCTCTCTTGTTCT 58.679 45.455 0.00 0.00 0.00 3.01
90 91 3.366422 GCGTGAATGTCTCTCTTGTTCTC 59.634 47.826 0.00 0.00 0.00 2.87
91 92 4.550422 CGTGAATGTCTCTCTTGTTCTCA 58.450 43.478 0.00 0.00 0.00 3.27
92 93 5.167121 CGTGAATGTCTCTCTTGTTCTCAT 58.833 41.667 0.00 0.00 0.00 2.90
93 94 5.061933 CGTGAATGTCTCTCTTGTTCTCATG 59.938 44.000 0.00 0.00 0.00 3.07
94 95 4.934001 TGAATGTCTCTCTTGTTCTCATGC 59.066 41.667 0.00 0.00 0.00 4.06
95 96 4.822685 ATGTCTCTCTTGTTCTCATGCT 57.177 40.909 0.00 0.00 0.00 3.79
96 97 4.185467 TGTCTCTCTTGTTCTCATGCTC 57.815 45.455 0.00 0.00 0.00 4.26
97 98 3.575687 TGTCTCTCTTGTTCTCATGCTCA 59.424 43.478 0.00 0.00 0.00 4.26
98 99 4.222366 TGTCTCTCTTGTTCTCATGCTCAT 59.778 41.667 0.00 0.00 0.00 2.90
99 100 5.420104 TGTCTCTCTTGTTCTCATGCTCATA 59.580 40.000 0.00 0.00 0.00 2.15
100 101 5.748152 GTCTCTCTTGTTCTCATGCTCATAC 59.252 44.000 0.00 0.00 0.00 2.39
101 102 5.420104 TCTCTCTTGTTCTCATGCTCATACA 59.580 40.000 0.00 0.00 0.00 2.29
102 103 6.097981 TCTCTCTTGTTCTCATGCTCATACAT 59.902 38.462 0.00 0.00 0.00 2.29
104 105 5.737860 TCTTGTTCTCATGCTCATACATGT 58.262 37.500 2.69 2.69 46.15 3.21
105 106 5.583457 TCTTGTTCTCATGCTCATACATGTG 59.417 40.000 9.11 2.84 46.15 3.21
106 107 4.193865 TGTTCTCATGCTCATACATGTGG 58.806 43.478 9.11 0.25 46.15 4.17
107 108 3.480505 TCTCATGCTCATACATGTGGG 57.519 47.619 9.11 0.00 46.15 4.61
108 109 2.105306 TCTCATGCTCATACATGTGGGG 59.895 50.000 9.11 1.30 46.15 4.96
109 110 2.105306 CTCATGCTCATACATGTGGGGA 59.895 50.000 9.11 2.18 46.15 4.81
110 111 2.509131 TCATGCTCATACATGTGGGGAA 59.491 45.455 9.11 0.00 46.15 3.97
111 112 3.053768 TCATGCTCATACATGTGGGGAAA 60.054 43.478 9.11 0.00 46.15 3.13
112 113 3.668141 TGCTCATACATGTGGGGAAAT 57.332 42.857 9.11 0.00 0.00 2.17
113 114 4.787135 TGCTCATACATGTGGGGAAATA 57.213 40.909 9.11 0.00 0.00 1.40
114 115 4.460263 TGCTCATACATGTGGGGAAATAC 58.540 43.478 9.11 0.00 0.00 1.89
115 116 4.165950 TGCTCATACATGTGGGGAAATACT 59.834 41.667 9.11 0.00 0.00 2.12
116 117 5.368230 TGCTCATACATGTGGGGAAATACTA 59.632 40.000 9.11 0.00 0.00 1.82
117 118 5.701290 GCTCATACATGTGGGGAAATACTAC 59.299 44.000 9.11 0.00 0.00 2.73
118 119 6.182507 TCATACATGTGGGGAAATACTACC 57.817 41.667 9.11 0.00 0.00 3.18
119 120 3.945640 ACATGTGGGGAAATACTACCC 57.054 47.619 0.00 0.00 44.94 3.69
145 146 3.483587 GAGGTCCAACTCCCAGCA 58.516 61.111 0.00 0.00 0.00 4.41
146 147 1.761174 GAGGTCCAACTCCCAGCAA 59.239 57.895 0.00 0.00 0.00 3.91
147 148 0.110486 GAGGTCCAACTCCCAGCAAA 59.890 55.000 0.00 0.00 0.00 3.68
148 149 0.178990 AGGTCCAACTCCCAGCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
149 150 0.178990 GGTCCAACTCCCAGCAAACT 60.179 55.000 0.00 0.00 0.00 2.66
150 151 1.073284 GGTCCAACTCCCAGCAAACTA 59.927 52.381 0.00 0.00 0.00 2.24
151 152 2.427506 GTCCAACTCCCAGCAAACTAG 58.572 52.381 0.00 0.00 0.00 2.57
152 153 1.168714 CCAACTCCCAGCAAACTAGC 58.831 55.000 0.00 0.00 0.00 3.42
153 154 0.798776 CAACTCCCAGCAAACTAGCG 59.201 55.000 0.00 0.00 40.15 4.26
154 155 0.685097 AACTCCCAGCAAACTAGCGA 59.315 50.000 0.00 0.00 40.15 4.93
155 156 0.037232 ACTCCCAGCAAACTAGCGAC 60.037 55.000 0.00 0.00 40.15 5.19
156 157 1.078759 CTCCCAGCAAACTAGCGACG 61.079 60.000 0.00 0.00 40.15 5.12
157 158 1.374252 CCCAGCAAACTAGCGACGT 60.374 57.895 0.00 0.00 40.15 4.34
158 159 1.626654 CCCAGCAAACTAGCGACGTG 61.627 60.000 0.00 0.00 40.15 4.49
159 160 1.626654 CCAGCAAACTAGCGACGTGG 61.627 60.000 0.00 0.00 40.15 4.94
160 161 1.374252 AGCAAACTAGCGACGTGGG 60.374 57.895 0.00 0.00 40.15 4.61
161 162 1.373748 GCAAACTAGCGACGTGGGA 60.374 57.895 0.00 0.00 0.00 4.37
162 163 1.623973 GCAAACTAGCGACGTGGGAC 61.624 60.000 0.00 0.00 0.00 4.46
163 164 0.038526 CAAACTAGCGACGTGGGACT 60.039 55.000 0.00 0.00 0.00 3.85
164 165 1.200716 CAAACTAGCGACGTGGGACTA 59.799 52.381 0.00 0.00 0.00 2.59
165 166 1.538047 AACTAGCGACGTGGGACTAA 58.462 50.000 0.00 0.00 0.00 2.24
166 167 1.538047 ACTAGCGACGTGGGACTAAA 58.462 50.000 0.00 0.00 0.00 1.85
167 168 1.200948 ACTAGCGACGTGGGACTAAAC 59.799 52.381 0.00 0.00 0.00 2.01
168 169 1.471684 CTAGCGACGTGGGACTAAACT 59.528 52.381 0.00 0.00 0.00 2.66
169 170 0.677842 AGCGACGTGGGACTAAACTT 59.322 50.000 0.00 0.00 0.00 2.66
170 171 1.069668 AGCGACGTGGGACTAAACTTT 59.930 47.619 0.00 0.00 0.00 2.66
171 172 1.193874 GCGACGTGGGACTAAACTTTG 59.806 52.381 0.00 0.00 0.00 2.77
172 173 1.796459 CGACGTGGGACTAAACTTTGG 59.204 52.381 0.00 0.00 0.00 3.28
173 174 2.804212 CGACGTGGGACTAAACTTTGGT 60.804 50.000 0.00 0.00 0.00 3.67
174 175 3.208594 GACGTGGGACTAAACTTTGGTT 58.791 45.455 0.00 0.00 37.24 3.67
175 176 3.208594 ACGTGGGACTAAACTTTGGTTC 58.791 45.455 0.00 0.00 34.14 3.62
176 177 2.551032 CGTGGGACTAAACTTTGGTTCC 59.449 50.000 8.17 8.17 40.08 3.62
177 178 3.558033 GTGGGACTAAACTTTGGTTCCA 58.442 45.455 12.90 12.90 46.39 3.53
178 179 3.558033 TGGGACTAAACTTTGGTTCCAC 58.442 45.455 12.90 0.00 44.03 4.02
179 180 2.889045 GGGACTAAACTTTGGTTCCACC 59.111 50.000 9.92 0.00 39.48 4.61
180 181 3.436035 GGGACTAAACTTTGGTTCCACCT 60.436 47.826 9.92 0.00 39.48 4.00
181 182 3.819337 GGACTAAACTTTGGTTCCACCTC 59.181 47.826 0.00 0.00 39.58 3.85
182 183 4.445879 GGACTAAACTTTGGTTCCACCTCT 60.446 45.833 0.00 0.00 39.58 3.69
183 184 4.715713 ACTAAACTTTGGTTCCACCTCTC 58.284 43.478 0.00 0.00 39.58 3.20
184 185 2.256117 AACTTTGGTTCCACCTCTCG 57.744 50.000 0.00 0.00 39.58 4.04
185 186 0.250338 ACTTTGGTTCCACCTCTCGC 60.250 55.000 0.00 0.00 39.58 5.03
186 187 0.955919 CTTTGGTTCCACCTCTCGCC 60.956 60.000 0.00 0.00 39.58 5.54
187 188 1.415672 TTTGGTTCCACCTCTCGCCT 61.416 55.000 0.00 0.00 39.58 5.52
188 189 1.415672 TTGGTTCCACCTCTCGCCTT 61.416 55.000 0.00 0.00 39.58 4.35
189 190 1.375326 GGTTCCACCTCTCGCCTTT 59.625 57.895 0.00 0.00 34.73 3.11
190 191 0.955919 GGTTCCACCTCTCGCCTTTG 60.956 60.000 0.00 0.00 34.73 2.77
191 192 1.302511 TTCCACCTCTCGCCTTTGC 60.303 57.895 0.00 0.00 0.00 3.68
192 193 2.032528 CCACCTCTCGCCTTTGCA 59.967 61.111 0.00 0.00 37.32 4.08
193 194 2.328099 CCACCTCTCGCCTTTGCAC 61.328 63.158 0.00 0.00 37.32 4.57
194 195 2.357517 ACCTCTCGCCTTTGCACG 60.358 61.111 0.00 0.00 37.32 5.34
195 196 2.048222 CCTCTCGCCTTTGCACGA 60.048 61.111 0.00 0.00 37.32 4.35
196 197 1.667830 CCTCTCGCCTTTGCACGAA 60.668 57.895 0.00 0.00 37.94 3.85
197 198 1.021390 CCTCTCGCCTTTGCACGAAT 61.021 55.000 0.00 0.00 37.94 3.34
198 199 0.095935 CTCTCGCCTTTGCACGAATG 59.904 55.000 0.00 0.00 37.94 2.67
199 200 1.135315 CTCGCCTTTGCACGAATGG 59.865 57.895 0.00 0.00 37.94 3.16
200 201 2.179018 CGCCTTTGCACGAATGGG 59.821 61.111 0.00 0.00 37.32 4.00
201 202 2.125952 GCCTTTGCACGAATGGGC 60.126 61.111 0.00 0.00 37.47 5.36
202 203 2.639327 GCCTTTGCACGAATGGGCT 61.639 57.895 0.00 0.00 36.96 5.19
203 204 1.213537 CCTTTGCACGAATGGGCTG 59.786 57.895 0.00 0.00 0.00 4.85
204 205 1.243342 CCTTTGCACGAATGGGCTGA 61.243 55.000 0.00 0.00 0.00 4.26
205 206 0.169672 CTTTGCACGAATGGGCTGAG 59.830 55.000 0.00 0.00 0.00 3.35
206 207 0.537143 TTTGCACGAATGGGCTGAGT 60.537 50.000 0.00 0.00 0.00 3.41
207 208 1.236616 TTGCACGAATGGGCTGAGTG 61.237 55.000 0.00 0.00 36.05 3.51
208 209 1.375908 GCACGAATGGGCTGAGTGA 60.376 57.895 0.00 0.00 35.03 3.41
209 210 1.364626 GCACGAATGGGCTGAGTGAG 61.365 60.000 0.00 0.00 35.03 3.51
218 219 3.199290 GCTGAGTGAGCCTCTAGGA 57.801 57.895 0.00 0.00 42.54 2.94
219 220 1.703411 GCTGAGTGAGCCTCTAGGAT 58.297 55.000 0.00 0.00 42.54 3.24
220 221 2.038659 GCTGAGTGAGCCTCTAGGATT 58.961 52.381 0.00 0.00 42.54 3.01
221 222 2.433970 GCTGAGTGAGCCTCTAGGATTT 59.566 50.000 0.00 0.00 42.54 2.17
222 223 3.639094 GCTGAGTGAGCCTCTAGGATTTA 59.361 47.826 0.00 0.00 42.54 1.40
223 224 4.283212 GCTGAGTGAGCCTCTAGGATTTAT 59.717 45.833 0.00 0.00 42.54 1.40
224 225 5.221621 GCTGAGTGAGCCTCTAGGATTTATT 60.222 44.000 0.00 0.00 42.54 1.40
225 226 6.015010 GCTGAGTGAGCCTCTAGGATTTATTA 60.015 42.308 0.00 0.00 42.54 0.98
226 227 7.531857 TGAGTGAGCCTCTAGGATTTATTAG 57.468 40.000 0.00 0.00 41.11 1.73
227 228 7.298374 TGAGTGAGCCTCTAGGATTTATTAGA 58.702 38.462 0.00 0.00 41.11 2.10
228 229 7.785028 TGAGTGAGCCTCTAGGATTTATTAGAA 59.215 37.037 0.00 0.00 41.11 2.10
229 230 8.554490 AGTGAGCCTCTAGGATTTATTAGAAA 57.446 34.615 0.00 0.00 37.39 2.52
230 231 9.165057 AGTGAGCCTCTAGGATTTATTAGAAAT 57.835 33.333 0.00 0.00 37.39 2.17
231 232 9.785982 GTGAGCCTCTAGGATTTATTAGAAATT 57.214 33.333 0.00 0.00 37.39 1.82
234 235 9.800572 AGCCTCTAGGATTTATTAGAAATTTCC 57.199 33.333 14.61 0.00 37.39 3.13
235 236 8.722394 GCCTCTAGGATTTATTAGAAATTTCCG 58.278 37.037 14.61 0.00 37.39 4.30
236 237 9.998106 CCTCTAGGATTTATTAGAAATTTCCGA 57.002 33.333 14.61 4.17 37.39 4.55
249 250 7.671495 AGAAATTTCCGAAATTGAAATTGGG 57.329 32.000 17.79 0.15 46.39 4.12
250 251 5.878332 AATTTCCGAAATTGAAATTGGGC 57.122 34.783 16.63 0.00 45.73 5.36
251 252 4.615588 TTTCCGAAATTGAAATTGGGCT 57.384 36.364 0.00 0.00 0.00 5.19
252 253 5.730296 TTTCCGAAATTGAAATTGGGCTA 57.270 34.783 0.00 0.00 0.00 3.93
253 254 4.981806 TCCGAAATTGAAATTGGGCTAG 57.018 40.909 0.00 0.00 0.00 3.42
254 255 3.130340 TCCGAAATTGAAATTGGGCTAGC 59.870 43.478 6.04 6.04 0.00 3.42
255 256 3.447742 CGAAATTGAAATTGGGCTAGCC 58.552 45.455 26.55 26.55 0.00 3.93
269 270 4.482952 GGCTAGCCCAAAGTAGACTAAA 57.517 45.455 24.19 0.00 0.00 1.85
270 271 5.037383 GGCTAGCCCAAAGTAGACTAAAT 57.963 43.478 24.19 0.00 0.00 1.40
271 272 5.437946 GGCTAGCCCAAAGTAGACTAAATT 58.562 41.667 24.19 0.00 0.00 1.82
272 273 5.527951 GGCTAGCCCAAAGTAGACTAAATTC 59.472 44.000 24.19 0.00 0.00 2.17
273 274 5.527951 GCTAGCCCAAAGTAGACTAAATTCC 59.472 44.000 2.29 0.00 0.00 3.01
274 275 5.514500 AGCCCAAAGTAGACTAAATTCCA 57.486 39.130 0.00 0.00 0.00 3.53
275 276 5.501156 AGCCCAAAGTAGACTAAATTCCAG 58.499 41.667 0.00 0.00 0.00 3.86
276 277 4.096532 GCCCAAAGTAGACTAAATTCCAGC 59.903 45.833 0.00 0.00 0.00 4.85
277 278 5.253330 CCCAAAGTAGACTAAATTCCAGCA 58.747 41.667 0.00 0.00 0.00 4.41
283 284 7.430760 AGTAGACTAAATTCCAGCAATCTCT 57.569 36.000 0.00 0.00 0.00 3.10
322 323 2.716017 CCTCCACCTCCGCTGTCTC 61.716 68.421 0.00 0.00 0.00 3.36
338 339 3.314388 CTCCGGCAGCTTTTCGTGC 62.314 63.158 0.00 0.00 39.08 5.34
352 353 3.545481 GTGCGAGTCCATGCGACG 61.545 66.667 8.19 0.00 46.92 5.12
353 354 4.794439 TGCGAGTCCATGCGACGG 62.794 66.667 0.00 6.45 46.92 4.79
372 373 2.282887 GGCAGAAAAGGGCGGGAA 60.283 61.111 0.00 0.00 0.00 3.97
375 376 1.470051 GCAGAAAAGGGCGGGAATTA 58.530 50.000 0.00 0.00 0.00 1.40
382 383 2.686572 GGGCGGGAATTAGGGTGGT 61.687 63.158 0.00 0.00 0.00 4.16
386 387 0.909623 CGGGAATTAGGGTGGTGAGT 59.090 55.000 0.00 0.00 0.00 3.41
398 399 1.224592 GGTGAGTGGCGGGATGATT 59.775 57.895 0.00 0.00 0.00 2.57
417 418 6.901081 TGATTGTAGAGAGTGTTGAGAAGA 57.099 37.500 0.00 0.00 0.00 2.87
433 434 1.164041 AAGAGTGGTTTTGTCGCGGG 61.164 55.000 6.13 0.00 0.00 6.13
441 442 1.440938 TTTTGTCGCGGGAACAGTGG 61.441 55.000 6.13 0.00 0.00 4.00
442 443 2.596553 TTTGTCGCGGGAACAGTGGT 62.597 55.000 6.13 0.00 0.00 4.16
458 459 1.933853 GTGGTGCTAGCTCCAAATACG 59.066 52.381 33.87 0.00 40.65 3.06
479 480 3.243128 GGCTCCGCCTCAGTTTTTA 57.757 52.632 0.00 0.00 46.69 1.52
484 485 0.521735 CCGCCTCAGTTTTTAGTGGC 59.478 55.000 0.00 0.00 40.14 5.01
487 488 1.821666 GCCTCAGTTTTTAGTGGCCCA 60.822 52.381 0.00 0.00 38.20 5.36
496 497 0.770557 TTAGTGGCCCAAGGGTGTCT 60.771 55.000 7.05 5.36 37.65 3.41
505 506 2.472029 CCAAGGGTGTCTGAGTCCTAT 58.528 52.381 0.00 0.00 0.00 2.57
506 507 2.169352 CCAAGGGTGTCTGAGTCCTATG 59.831 54.545 0.00 0.00 0.00 2.23
517 518 2.092267 TGAGTCCTATGTAGCGGGTGTA 60.092 50.000 0.00 0.00 0.00 2.90
524 525 2.440517 TGTAGCGGGTGTATGGACTA 57.559 50.000 0.00 0.00 0.00 2.59
525 526 2.953453 TGTAGCGGGTGTATGGACTAT 58.047 47.619 0.00 0.00 0.00 2.12
526 527 2.889045 TGTAGCGGGTGTATGGACTATC 59.111 50.000 0.00 0.00 0.00 2.08
528 529 0.672342 GCGGGTGTATGGACTATCGT 59.328 55.000 0.00 0.00 0.00 3.73
567 568 5.873712 TGCTTTTGATTTGCAGAAAAACAGA 59.126 32.000 0.00 0.00 32.77 3.41
570 571 7.911727 GCTTTTGATTTGCAGAAAAACAGAAAT 59.088 29.630 0.00 0.00 32.77 2.17
665 666 0.606401 ATGCGGGAGGTTTGAGTGTG 60.606 55.000 0.00 0.00 0.00 3.82
667 668 1.966451 CGGGAGGTTTGAGTGTGCC 60.966 63.158 0.00 0.00 0.00 5.01
719 720 3.592898 ATCGTGCACACAGATGAGTTA 57.407 42.857 18.64 0.00 0.00 2.24
723 724 4.022676 TCGTGCACACAGATGAGTTAGTAA 60.023 41.667 18.64 0.00 0.00 2.24
758 759 4.378356 CCATCGTCGATTTCAAAAGCAAGA 60.378 41.667 4.63 0.00 0.00 3.02
764 765 3.976942 CGATTTCAAAAGCAAGACCACTG 59.023 43.478 0.00 0.00 0.00 3.66
766 767 2.057137 TCAAAAGCAAGACCACTGCT 57.943 45.000 0.00 0.00 41.08 4.24
771 772 2.057137 AGCAAGACCACTGCTTTTCA 57.943 45.000 0.00 0.00 35.02 2.69
847 848 1.284297 GCAACATCTTGGCCAAACGC 61.284 55.000 20.91 11.59 0.00 4.84
895 898 3.550233 GCACGGGGAAAAAGAAGAGAAAC 60.550 47.826 0.00 0.00 0.00 2.78
897 900 5.061179 CACGGGGAAAAAGAAGAGAAACTA 58.939 41.667 0.00 0.00 0.00 2.24
1698 1768 6.314917 AGATCCCCTAAGTTTTGTTCAACAT 58.685 36.000 0.00 0.00 0.00 2.71
1868 1940 7.576861 TTTGACTTAAGACAAAACTTAGGGG 57.423 36.000 24.34 0.00 36.92 4.79
1914 2010 7.383102 AGTAGCTTCATAGAAATGTGTTTGG 57.617 36.000 0.00 0.00 34.50 3.28
2053 2150 2.032290 GGACTTTGTCGTTGTAGGTTGC 60.032 50.000 0.00 0.00 32.65 4.17
2080 2177 5.585047 GTGTTTCCACAAAGTCTAACACTCT 59.415 40.000 0.00 0.00 41.09 3.24
2199 2296 5.221641 GGTTCCCTTAAGGTTTCAAGCAATT 60.222 40.000 20.22 0.00 36.75 2.32
2887 2991 6.798959 GCCTCACATCGCAATATAAAATTCTC 59.201 38.462 0.00 0.00 0.00 2.87
2940 3047 9.289782 AGGGAATTATAATTTCTAGCATGTGAC 57.710 33.333 14.80 0.00 0.00 3.67
2953 3060 6.986817 TCTAGCATGTGACTATCCTTTTAAGC 59.013 38.462 0.00 0.00 0.00 3.09
3070 3177 2.603560 GCTATTTCAGTGTAGGTGCGAC 59.396 50.000 0.00 0.00 0.00 5.19
3089 3196 4.083537 GCGACTGGTACATCAAACATGAAA 60.084 41.667 0.00 0.00 38.20 2.69
3090 3197 5.391950 GCGACTGGTACATCAAACATGAAAT 60.392 40.000 0.00 0.00 38.20 2.17
3280 3387 7.988028 ACTGCCAAGTTAGTTCCTTCTAATATC 59.012 37.037 0.00 0.00 30.14 1.63
3541 4133 3.391506 AAGCCTTCTGAATGCAAAACC 57.608 42.857 17.81 0.00 0.00 3.27
3552 4144 1.081509 GCAAAACCGCGAATGCTCA 60.082 52.632 8.23 0.00 39.65 4.26
3879 4471 5.635280 CAGTGGATATACAATCGACCATCAC 59.365 44.000 0.00 0.00 0.00 3.06
3951 4543 8.522830 CCACAATTTCAGGTTATACTTTGTGAT 58.477 33.333 12.55 0.00 43.16 3.06
3983 4575 3.077359 GTTCAGCCTGACAGTATTGCTT 58.923 45.455 0.00 0.00 0.00 3.91
4068 4660 9.227777 ACAACTAATGTAAAATTGTACTCCCTC 57.772 33.333 7.31 0.00 41.63 4.30
4069 4661 8.674607 CAACTAATGTAAAATTGTACTCCCTCC 58.325 37.037 7.31 0.00 0.00 4.30
4070 4662 7.924541 ACTAATGTAAAATTGTACTCCCTCCA 58.075 34.615 7.31 0.00 0.00 3.86
4071 4663 8.557450 ACTAATGTAAAATTGTACTCCCTCCAT 58.443 33.333 7.31 0.00 0.00 3.41
4072 4664 9.408648 CTAATGTAAAATTGTACTCCCTCCATT 57.591 33.333 7.31 0.22 0.00 3.16
4073 4665 7.881775 ATGTAAAATTGTACTCCCTCCATTC 57.118 36.000 7.31 0.00 0.00 2.67
4074 4666 6.184789 TGTAAAATTGTACTCCCTCCATTCC 58.815 40.000 7.31 0.00 0.00 3.01
4075 4667 3.560636 AATTGTACTCCCTCCATTCCG 57.439 47.619 0.00 0.00 0.00 4.30
4076 4668 2.241281 TTGTACTCCCTCCATTCCGA 57.759 50.000 0.00 0.00 0.00 4.55
4077 4669 2.241281 TGTACTCCCTCCATTCCGAA 57.759 50.000 0.00 0.00 0.00 4.30
4078 4670 2.759355 TGTACTCCCTCCATTCCGAAT 58.241 47.619 0.00 0.00 0.00 3.34
4079 4671 3.112263 TGTACTCCCTCCATTCCGAATT 58.888 45.455 0.00 0.00 0.00 2.17
4080 4672 4.291792 TGTACTCCCTCCATTCCGAATTA 58.708 43.478 0.00 0.00 0.00 1.40
4081 4673 3.840124 ACTCCCTCCATTCCGAATTAC 57.160 47.619 0.00 0.00 0.00 1.89
4082 4674 3.385115 ACTCCCTCCATTCCGAATTACT 58.615 45.455 0.00 0.00 0.00 2.24
4083 4675 3.388350 ACTCCCTCCATTCCGAATTACTC 59.612 47.826 0.00 0.00 0.00 2.59
4085 4677 2.102588 CCCTCCATTCCGAATTACTCGT 59.897 50.000 0.00 0.00 46.65 4.18
4086 4678 3.431766 CCCTCCATTCCGAATTACTCGTT 60.432 47.826 0.00 0.00 46.65 3.85
4087 4679 3.555956 CCTCCATTCCGAATTACTCGTTG 59.444 47.826 0.00 0.00 46.65 4.10
4088 4680 2.933906 TCCATTCCGAATTACTCGTTGC 59.066 45.455 0.00 0.00 46.65 4.17
4089 4681 2.675844 CCATTCCGAATTACTCGTTGCA 59.324 45.455 0.00 0.00 46.65 4.08
4090 4682 3.242413 CCATTCCGAATTACTCGTTGCAG 60.242 47.826 0.00 0.00 46.65 4.41
4091 4683 3.306917 TTCCGAATTACTCGTTGCAGA 57.693 42.857 0.00 0.00 46.65 4.26
4092 4684 3.306917 TCCGAATTACTCGTTGCAGAA 57.693 42.857 0.00 0.00 46.65 3.02
4093 4685 3.655486 TCCGAATTACTCGTTGCAGAAA 58.345 40.909 0.00 0.00 46.65 2.52
4094 4686 4.250464 TCCGAATTACTCGTTGCAGAAAT 58.750 39.130 0.00 0.00 46.65 2.17
4095 4687 4.092821 TCCGAATTACTCGTTGCAGAAATG 59.907 41.667 0.00 0.00 46.65 2.32
4096 4688 4.334443 CGAATTACTCGTTGCAGAAATGG 58.666 43.478 0.00 0.00 42.89 3.16
4097 4689 4.092821 CGAATTACTCGTTGCAGAAATGGA 59.907 41.667 0.00 0.00 42.89 3.41
4098 4690 5.220662 CGAATTACTCGTTGCAGAAATGGAT 60.221 40.000 0.00 0.00 42.89 3.41
4099 4691 4.944962 TTACTCGTTGCAGAAATGGATG 57.055 40.909 0.00 0.00 0.00 3.51
4100 4692 2.783135 ACTCGTTGCAGAAATGGATGT 58.217 42.857 0.00 0.00 0.00 3.06
4101 4693 3.937814 ACTCGTTGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 0.00 2.29
4102 4694 4.517285 ACTCGTTGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 0.00 2.29
4103 4695 4.572389 ACTCGTTGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 0.00 2.24
4104 4696 4.769688 TCGTTGCAGAAATGGATGTATCT 58.230 39.130 0.00 0.00 0.00 1.98
4105 4697 5.912892 TCGTTGCAGAAATGGATGTATCTA 58.087 37.500 0.00 0.00 0.00 1.98
4106 4698 5.985530 TCGTTGCAGAAATGGATGTATCTAG 59.014 40.000 0.00 0.00 0.00 2.43
4107 4699 5.985530 CGTTGCAGAAATGGATGTATCTAGA 59.014 40.000 0.00 0.00 0.00 2.43
4108 4700 6.648310 CGTTGCAGAAATGGATGTATCTAGAT 59.352 38.462 10.73 10.73 0.00 1.98
4109 4701 7.359849 CGTTGCAGAAATGGATGTATCTAGATG 60.360 40.741 15.79 0.00 0.00 2.90
4110 4702 7.071069 TGCAGAAATGGATGTATCTAGATGT 57.929 36.000 15.79 1.25 0.00 3.06
4111 4703 8.193953 TGCAGAAATGGATGTATCTAGATGTA 57.806 34.615 15.79 4.44 0.00 2.29
4112 4704 8.819845 TGCAGAAATGGATGTATCTAGATGTAT 58.180 33.333 15.79 9.11 0.00 2.29
4113 4705 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
4142 4734 9.178758 AGTTTTAGATACATTCATTTCTGGGAC 57.821 33.333 0.00 0.00 0.00 4.46
4143 4735 7.786178 TTTAGATACATTCATTTCTGGGACG 57.214 36.000 0.00 0.00 0.00 4.79
4144 4736 5.614324 AGATACATTCATTTCTGGGACGA 57.386 39.130 0.00 0.00 0.00 4.20
4145 4737 5.605534 AGATACATTCATTTCTGGGACGAG 58.394 41.667 0.00 0.00 0.00 4.18
4146 4738 3.703001 ACATTCATTTCTGGGACGAGT 57.297 42.857 0.00 0.00 0.00 4.18
4147 4739 4.819105 ACATTCATTTCTGGGACGAGTA 57.181 40.909 0.00 0.00 0.00 2.59
4148 4740 5.160607 ACATTCATTTCTGGGACGAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4149 4741 5.745227 ACATTCATTTCTGGGACGAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4150 4742 6.180472 ACATTCATTTCTGGGACGAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4151 4743 6.659242 ACATTCATTTCTGGGACGAGTAATTT 59.341 34.615 0.00 0.00 0.00 1.82
4152 4744 6.494893 TTCATTTCTGGGACGAGTAATTTG 57.505 37.500 0.00 0.00 0.00 2.32
4153 4745 4.941263 TCATTTCTGGGACGAGTAATTTGG 59.059 41.667 0.00 0.00 0.00 3.28
4154 4746 4.627284 TTTCTGGGACGAGTAATTTGGA 57.373 40.909 0.00 0.00 0.00 3.53
4155 4747 4.627284 TTCTGGGACGAGTAATTTGGAA 57.373 40.909 0.00 0.00 0.00 3.53
4156 4748 3.934068 TCTGGGACGAGTAATTTGGAAC 58.066 45.455 0.00 0.00 0.00 3.62
4157 4749 2.671396 CTGGGACGAGTAATTTGGAACG 59.329 50.000 0.00 0.00 0.00 3.95
4158 4750 2.004733 GGGACGAGTAATTTGGAACGG 58.995 52.381 0.00 0.00 0.00 4.44
4159 4751 2.354003 GGGACGAGTAATTTGGAACGGA 60.354 50.000 0.00 0.00 0.00 4.69
4160 4752 2.928116 GGACGAGTAATTTGGAACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
4161 4753 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4162 4754 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4163 4755 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4164 4756 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4194 4786 5.343860 CGTATTGTGTGTGACTCGTTATTCA 59.656 40.000 0.00 0.00 0.00 2.57
4217 4809 8.642935 TCATGGAAAAGATTGTGTACCATTAA 57.357 30.769 0.00 0.00 34.96 1.40
4227 4821 6.971527 TTGTGTACCATTAATAACAGTCGG 57.028 37.500 0.00 0.00 0.00 4.79
4293 4887 4.020751 TCTGGAGCATATATTGTCCTCAGC 60.021 45.833 10.29 0.00 0.00 4.26
4393 4987 8.091385 TGTTCGTTCCTAATCCTTAAAAAGTC 57.909 34.615 0.00 0.00 0.00 3.01
4398 4992 9.379791 CGTTCCTAATCCTTAAAAAGTCTATGT 57.620 33.333 0.00 0.00 0.00 2.29
4860 5457 5.048083 GGAAATATTGAGTGCAGACAACCAA 60.048 40.000 7.50 0.00 0.00 3.67
5224 5821 0.535797 GTAGCGGGCTAACAGGACTT 59.464 55.000 1.27 0.00 0.00 3.01
5426 6023 7.267128 CCACACATACCAAGCATTTCAATAAT 58.733 34.615 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.797039 CGGGAATGAGCTGATGTCTAAA 58.203 45.455 0.00 0.00 0.00 1.85
1 2 2.483714 GCGGGAATGAGCTGATGTCTAA 60.484 50.000 0.00 0.00 0.00 2.10
2 3 1.069204 GCGGGAATGAGCTGATGTCTA 59.931 52.381 0.00 0.00 0.00 2.59
3 4 0.179062 GCGGGAATGAGCTGATGTCT 60.179 55.000 0.00 0.00 0.00 3.41
4 5 0.462581 TGCGGGAATGAGCTGATGTC 60.463 55.000 0.00 0.00 0.00 3.06
5 6 0.035152 TTGCGGGAATGAGCTGATGT 60.035 50.000 0.00 0.00 0.00 3.06
6 7 0.379669 GTTGCGGGAATGAGCTGATG 59.620 55.000 0.00 0.00 0.00 3.07
7 8 0.254178 AGTTGCGGGAATGAGCTGAT 59.746 50.000 0.00 0.00 0.00 2.90
8 9 0.391661 GAGTTGCGGGAATGAGCTGA 60.392 55.000 0.00 0.00 0.00 4.26
9 10 1.699656 CGAGTTGCGGGAATGAGCTG 61.700 60.000 0.00 0.00 36.03 4.24
10 11 1.448540 CGAGTTGCGGGAATGAGCT 60.449 57.895 0.00 0.00 36.03 4.09
11 12 3.093278 CGAGTTGCGGGAATGAGC 58.907 61.111 0.00 0.00 36.03 4.26
12 13 3.093278 GCGAGTTGCGGGAATGAG 58.907 61.111 0.00 0.00 41.29 2.90
28 29 2.099062 CTTGCCATGACGCTTCGC 59.901 61.111 0.00 0.00 0.00 4.70
29 30 2.787249 CCTTGCCATGACGCTTCG 59.213 61.111 0.00 0.00 0.00 3.79
30 31 2.486966 GCCTTGCCATGACGCTTC 59.513 61.111 0.00 0.00 0.00 3.86
31 32 3.434319 CGCCTTGCCATGACGCTT 61.434 61.111 0.00 0.00 0.00 4.68
47 48 4.715523 TTCCTCCTTTGCCGCCCG 62.716 66.667 0.00 0.00 0.00 6.13
48 49 3.062466 GTTCCTCCTTTGCCGCCC 61.062 66.667 0.00 0.00 0.00 6.13
49 50 3.431725 CGTTCCTCCTTTGCCGCC 61.432 66.667 0.00 0.00 0.00 6.13
50 51 4.103103 GCGTTCCTCCTTTGCCGC 62.103 66.667 0.00 0.00 0.00 6.53
51 52 3.788766 CGCGTTCCTCCTTTGCCG 61.789 66.667 0.00 0.00 0.00 5.69
52 53 4.103103 GCGCGTTCCTCCTTTGCC 62.103 66.667 8.43 0.00 0.00 4.52
53 54 4.445545 CGCGCGTTCCTCCTTTGC 62.446 66.667 24.19 0.00 0.00 3.68
54 55 3.041940 ACGCGCGTTCCTCCTTTG 61.042 61.111 32.73 0.00 0.00 2.77
55 56 2.981977 TTCACGCGCGTTCCTCCTTT 62.982 55.000 35.90 5.04 0.00 3.11
56 57 2.781595 ATTCACGCGCGTTCCTCCTT 62.782 55.000 35.90 11.06 0.00 3.36
57 58 3.296709 ATTCACGCGCGTTCCTCCT 62.297 57.895 35.90 12.04 0.00 3.69
58 59 2.813908 ATTCACGCGCGTTCCTCC 60.814 61.111 35.90 0.00 0.00 4.30
59 60 2.279937 GACATTCACGCGCGTTCCTC 62.280 60.000 35.90 18.74 0.00 3.71
60 61 2.357034 ACATTCACGCGCGTTCCT 60.357 55.556 35.90 17.60 0.00 3.36
61 62 2.095843 GACATTCACGCGCGTTCC 59.904 61.111 35.90 14.47 0.00 3.62
62 63 1.057361 GAGACATTCACGCGCGTTC 59.943 57.895 35.90 27.18 0.00 3.95
63 64 1.344942 GAGAGACATTCACGCGCGTT 61.345 55.000 35.90 19.80 0.00 4.84
64 65 1.801913 GAGAGACATTCACGCGCGT 60.802 57.895 32.73 32.73 0.00 6.01
65 66 1.073216 AAGAGAGACATTCACGCGCG 61.073 55.000 30.96 30.96 0.00 6.86
66 67 0.368227 CAAGAGAGACATTCACGCGC 59.632 55.000 5.73 0.00 0.00 6.86
67 68 1.702886 ACAAGAGAGACATTCACGCG 58.297 50.000 3.53 3.53 0.00 6.01
68 69 3.321497 AGAACAAGAGAGACATTCACGC 58.679 45.455 0.00 0.00 0.00 5.34
69 70 4.550422 TGAGAACAAGAGAGACATTCACG 58.450 43.478 0.00 0.00 0.00 4.35
70 71 5.163874 GCATGAGAACAAGAGAGACATTCAC 60.164 44.000 0.00 0.00 0.00 3.18
71 72 4.934001 GCATGAGAACAAGAGAGACATTCA 59.066 41.667 0.00 0.00 0.00 2.57
72 73 5.177326 AGCATGAGAACAAGAGAGACATTC 58.823 41.667 0.00 0.00 0.00 2.67
73 74 5.163281 AGCATGAGAACAAGAGAGACATT 57.837 39.130 0.00 0.00 0.00 2.71
74 75 4.222366 TGAGCATGAGAACAAGAGAGACAT 59.778 41.667 0.00 0.00 0.00 3.06
75 76 3.575687 TGAGCATGAGAACAAGAGAGACA 59.424 43.478 0.00 0.00 0.00 3.41
76 77 4.185467 TGAGCATGAGAACAAGAGAGAC 57.815 45.455 0.00 0.00 0.00 3.36
77 78 5.420104 TGTATGAGCATGAGAACAAGAGAGA 59.580 40.000 0.00 0.00 0.00 3.10
78 79 5.658468 TGTATGAGCATGAGAACAAGAGAG 58.342 41.667 0.00 0.00 0.00 3.20
79 80 5.665916 TGTATGAGCATGAGAACAAGAGA 57.334 39.130 0.00 0.00 0.00 3.10
80 81 5.816258 ACATGTATGAGCATGAGAACAAGAG 59.184 40.000 12.27 0.00 46.65 2.85
81 82 5.583457 CACATGTATGAGCATGAGAACAAGA 59.417 40.000 12.27 0.00 46.65 3.02
82 83 5.220796 CCACATGTATGAGCATGAGAACAAG 60.221 44.000 12.27 0.00 46.65 3.16
83 84 4.637091 CCACATGTATGAGCATGAGAACAA 59.363 41.667 12.27 0.00 46.65 2.83
84 85 4.193865 CCACATGTATGAGCATGAGAACA 58.806 43.478 12.27 0.00 46.65 3.18
85 86 3.562973 CCCACATGTATGAGCATGAGAAC 59.437 47.826 12.27 0.00 46.65 3.01
86 87 3.434024 CCCCACATGTATGAGCATGAGAA 60.434 47.826 12.27 0.00 46.65 2.87
87 88 2.105306 CCCCACATGTATGAGCATGAGA 59.895 50.000 12.27 0.00 46.65 3.27
88 89 2.105306 TCCCCACATGTATGAGCATGAG 59.895 50.000 12.27 5.04 46.65 2.90
89 90 2.126057 TCCCCACATGTATGAGCATGA 58.874 47.619 12.27 0.00 46.65 3.07
91 92 3.668141 TTTCCCCACATGTATGAGCAT 57.332 42.857 0.00 0.00 0.00 3.79
92 93 3.668141 ATTTCCCCACATGTATGAGCA 57.332 42.857 0.00 0.00 0.00 4.26
93 94 4.718961 AGTATTTCCCCACATGTATGAGC 58.281 43.478 0.00 0.00 0.00 4.26
94 95 6.231211 GGTAGTATTTCCCCACATGTATGAG 58.769 44.000 0.00 0.00 0.00 2.90
95 96 5.072600 GGGTAGTATTTCCCCACATGTATGA 59.927 44.000 0.00 0.00 38.37 2.15
96 97 5.313712 GGGTAGTATTTCCCCACATGTATG 58.686 45.833 0.00 0.00 38.37 2.39
97 98 5.578157 GGGTAGTATTTCCCCACATGTAT 57.422 43.478 0.00 0.00 38.37 2.29
99 100 3.945640 GGGTAGTATTTCCCCACATGT 57.054 47.619 0.00 0.00 38.37 3.21
106 107 6.215023 CCTCCTTATAAGGGGTAGTATTTCCC 59.785 46.154 26.52 0.00 45.69 3.97
107 108 6.791466 ACCTCCTTATAAGGGGTAGTATTTCC 59.209 42.308 29.20 0.00 45.69 3.13
108 109 7.038445 GGACCTCCTTATAAGGGGTAGTATTTC 60.038 44.444 29.83 20.48 45.69 2.17
109 110 6.791466 GGACCTCCTTATAAGGGGTAGTATTT 59.209 42.308 29.83 15.37 45.69 1.40
110 111 6.125380 TGGACCTCCTTATAAGGGGTAGTATT 60.125 42.308 29.83 15.88 45.69 1.89
111 112 5.380819 TGGACCTCCTTATAAGGGGTAGTAT 59.619 44.000 29.83 16.39 45.69 2.12
112 113 4.738652 TGGACCTCCTTATAAGGGGTAGTA 59.261 45.833 29.83 20.89 45.69 1.82
113 114 3.538980 TGGACCTCCTTATAAGGGGTAGT 59.461 47.826 29.83 22.13 45.69 2.73
114 115 4.209154 TGGACCTCCTTATAAGGGGTAG 57.791 50.000 29.83 21.17 45.69 3.18
115 116 4.014973 AGTTGGACCTCCTTATAAGGGGTA 60.015 45.833 29.83 19.71 45.69 3.69
116 117 3.120898 GTTGGACCTCCTTATAAGGGGT 58.879 50.000 30.03 30.03 45.69 4.95
117 118 3.391626 GAGTTGGACCTCCTTATAAGGGG 59.608 52.174 27.65 25.35 46.75 4.79
118 119 3.391626 GGAGTTGGACCTCCTTATAAGGG 59.608 52.174 27.65 18.78 46.34 3.95
119 120 4.691326 GGAGTTGGACCTCCTTATAAGG 57.309 50.000 23.54 23.54 46.34 2.69
128 129 0.110486 TTTGCTGGGAGTTGGACCTC 59.890 55.000 0.00 0.00 0.00 3.85
129 130 0.178990 GTTTGCTGGGAGTTGGACCT 60.179 55.000 0.00 0.00 0.00 3.85
130 131 0.178990 AGTTTGCTGGGAGTTGGACC 60.179 55.000 0.00 0.00 0.00 4.46
131 132 2.427506 CTAGTTTGCTGGGAGTTGGAC 58.572 52.381 0.00 0.00 0.00 4.02
132 133 1.271379 GCTAGTTTGCTGGGAGTTGGA 60.271 52.381 0.00 0.00 0.00 3.53
133 134 1.168714 GCTAGTTTGCTGGGAGTTGG 58.831 55.000 0.00 0.00 0.00 3.77
134 135 0.798776 CGCTAGTTTGCTGGGAGTTG 59.201 55.000 0.00 0.00 0.00 3.16
135 136 0.685097 TCGCTAGTTTGCTGGGAGTT 59.315 50.000 0.00 0.00 0.00 3.01
136 137 0.037232 GTCGCTAGTTTGCTGGGAGT 60.037 55.000 0.00 0.00 0.00 3.85
137 138 1.078759 CGTCGCTAGTTTGCTGGGAG 61.079 60.000 0.00 0.00 0.00 4.30
138 139 1.080093 CGTCGCTAGTTTGCTGGGA 60.080 57.895 0.00 0.00 0.00 4.37
139 140 1.374252 ACGTCGCTAGTTTGCTGGG 60.374 57.895 0.00 0.00 0.00 4.45
140 141 1.626654 CCACGTCGCTAGTTTGCTGG 61.627 60.000 0.00 0.00 0.00 4.85
141 142 1.626654 CCCACGTCGCTAGTTTGCTG 61.627 60.000 0.00 0.00 0.00 4.41
142 143 1.374252 CCCACGTCGCTAGTTTGCT 60.374 57.895 0.00 0.00 0.00 3.91
143 144 1.373748 TCCCACGTCGCTAGTTTGC 60.374 57.895 0.00 0.00 0.00 3.68
144 145 0.038526 AGTCCCACGTCGCTAGTTTG 60.039 55.000 0.00 0.00 0.00 2.93
145 146 1.538047 TAGTCCCACGTCGCTAGTTT 58.462 50.000 0.00 0.00 0.00 2.66
146 147 1.538047 TTAGTCCCACGTCGCTAGTT 58.462 50.000 0.00 0.00 0.00 2.24
147 148 1.200948 GTTTAGTCCCACGTCGCTAGT 59.799 52.381 0.00 0.00 0.00 2.57
148 149 1.471684 AGTTTAGTCCCACGTCGCTAG 59.528 52.381 0.00 0.00 0.00 3.42
149 150 1.538047 AGTTTAGTCCCACGTCGCTA 58.462 50.000 0.00 0.00 0.00 4.26
150 151 0.677842 AAGTTTAGTCCCACGTCGCT 59.322 50.000 0.00 0.00 0.00 4.93
151 152 1.193874 CAAAGTTTAGTCCCACGTCGC 59.806 52.381 0.00 0.00 0.00 5.19
152 153 1.796459 CCAAAGTTTAGTCCCACGTCG 59.204 52.381 0.00 0.00 0.00 5.12
153 154 2.842457 ACCAAAGTTTAGTCCCACGTC 58.158 47.619 0.00 0.00 0.00 4.34
154 155 3.208594 GAACCAAAGTTTAGTCCCACGT 58.791 45.455 0.00 0.00 35.94 4.49
155 156 2.551032 GGAACCAAAGTTTAGTCCCACG 59.449 50.000 0.00 0.00 35.94 4.94
156 157 3.317149 GTGGAACCAAAGTTTAGTCCCAC 59.683 47.826 6.81 6.81 38.16 4.61
157 158 3.558033 GTGGAACCAAAGTTTAGTCCCA 58.442 45.455 0.00 0.00 35.94 4.37
172 173 1.578206 GCAAAGGCGAGAGGTGGAAC 61.578 60.000 0.00 0.00 0.00 3.62
173 174 1.302511 GCAAAGGCGAGAGGTGGAA 60.303 57.895 0.00 0.00 0.00 3.53
174 175 2.347490 GCAAAGGCGAGAGGTGGA 59.653 61.111 0.00 0.00 0.00 4.02
175 176 2.032528 TGCAAAGGCGAGAGGTGG 59.967 61.111 0.00 0.00 45.35 4.61
176 177 2.671177 CGTGCAAAGGCGAGAGGTG 61.671 63.158 0.00 0.00 45.35 4.00
177 178 2.357517 CGTGCAAAGGCGAGAGGT 60.358 61.111 0.00 0.00 45.35 3.85
178 179 1.021390 ATTCGTGCAAAGGCGAGAGG 61.021 55.000 0.00 0.00 45.35 3.69
179 180 0.095935 CATTCGTGCAAAGGCGAGAG 59.904 55.000 0.00 0.00 45.35 3.20
180 181 1.298157 CCATTCGTGCAAAGGCGAGA 61.298 55.000 0.00 0.00 45.35 4.04
181 182 1.135315 CCATTCGTGCAAAGGCGAG 59.865 57.895 0.00 0.00 45.35 5.03
182 183 2.331893 CCCATTCGTGCAAAGGCGA 61.332 57.895 0.00 0.00 45.35 5.54
183 184 2.179018 CCCATTCGTGCAAAGGCG 59.821 61.111 0.00 0.00 45.35 5.52
184 185 2.125952 GCCCATTCGTGCAAAGGC 60.126 61.111 0.00 0.00 41.68 4.35
185 186 1.213537 CAGCCCATTCGTGCAAAGG 59.786 57.895 0.00 0.00 0.00 3.11
186 187 0.169672 CTCAGCCCATTCGTGCAAAG 59.830 55.000 0.00 0.00 0.00 2.77
187 188 0.537143 ACTCAGCCCATTCGTGCAAA 60.537 50.000 0.00 0.00 0.00 3.68
188 189 1.073025 ACTCAGCCCATTCGTGCAA 59.927 52.632 0.00 0.00 0.00 4.08
189 190 1.672030 CACTCAGCCCATTCGTGCA 60.672 57.895 0.00 0.00 0.00 4.57
190 191 1.364626 CTCACTCAGCCCATTCGTGC 61.365 60.000 0.00 0.00 0.00 5.34
191 192 1.364626 GCTCACTCAGCCCATTCGTG 61.365 60.000 0.00 0.00 43.17 4.35
192 193 1.078848 GCTCACTCAGCCCATTCGT 60.079 57.895 0.00 0.00 43.17 3.85
193 194 3.805267 GCTCACTCAGCCCATTCG 58.195 61.111 0.00 0.00 43.17 3.34
203 204 7.768807 TCTAATAAATCCTAGAGGCTCACTC 57.231 40.000 18.26 0.00 46.98 3.51
204 205 8.554490 TTTCTAATAAATCCTAGAGGCTCACT 57.446 34.615 18.26 0.00 34.44 3.41
205 206 9.785982 AATTTCTAATAAATCCTAGAGGCTCAC 57.214 33.333 18.26 0.00 34.44 3.51
208 209 9.800572 GGAAATTTCTAATAAATCCTAGAGGCT 57.199 33.333 17.42 0.00 34.44 4.58
209 210 8.722394 CGGAAATTTCTAATAAATCCTAGAGGC 58.278 37.037 17.42 0.00 34.44 4.70
210 211 9.998106 TCGGAAATTTCTAATAAATCCTAGAGG 57.002 33.333 17.42 0.00 0.00 3.69
229 230 5.164620 AGCCCAATTTCAATTTCGGAAAT 57.835 34.783 10.11 10.11 44.52 2.17
230 231 4.615588 AGCCCAATTTCAATTTCGGAAA 57.384 36.364 5.52 5.52 38.49 3.13
231 232 4.381505 GCTAGCCCAATTTCAATTTCGGAA 60.382 41.667 2.29 0.00 0.00 4.30
232 233 3.130340 GCTAGCCCAATTTCAATTTCGGA 59.870 43.478 2.29 0.00 0.00 4.55
233 234 3.447742 GCTAGCCCAATTTCAATTTCGG 58.552 45.455 2.29 0.00 0.00 4.30
234 235 3.447742 GGCTAGCCCAATTTCAATTTCG 58.552 45.455 24.19 0.00 0.00 3.46
248 249 4.482952 TTTAGTCTACTTTGGGCTAGCC 57.517 45.455 26.55 26.55 0.00 3.93
249 250 5.527951 GGAATTTAGTCTACTTTGGGCTAGC 59.472 44.000 6.04 6.04 0.00 3.42
250 251 6.650120 TGGAATTTAGTCTACTTTGGGCTAG 58.350 40.000 0.00 0.00 0.00 3.42
251 252 6.630203 TGGAATTTAGTCTACTTTGGGCTA 57.370 37.500 0.00 0.00 0.00 3.93
252 253 5.501156 CTGGAATTTAGTCTACTTTGGGCT 58.499 41.667 0.00 0.00 0.00 5.19
253 254 4.096532 GCTGGAATTTAGTCTACTTTGGGC 59.903 45.833 0.00 0.00 0.00 5.36
254 255 5.253330 TGCTGGAATTTAGTCTACTTTGGG 58.747 41.667 0.00 0.00 0.00 4.12
255 256 6.817765 TTGCTGGAATTTAGTCTACTTTGG 57.182 37.500 0.00 0.00 0.00 3.28
256 257 8.273780 AGATTGCTGGAATTTAGTCTACTTTG 57.726 34.615 0.00 0.00 0.00 2.77
257 258 8.325046 AGAGATTGCTGGAATTTAGTCTACTTT 58.675 33.333 0.00 0.00 0.00 2.66
258 259 7.768120 CAGAGATTGCTGGAATTTAGTCTACTT 59.232 37.037 0.00 0.00 32.26 2.24
259 260 7.271511 CAGAGATTGCTGGAATTTAGTCTACT 58.728 38.462 0.00 0.00 32.26 2.57
260 261 7.475771 CAGAGATTGCTGGAATTTAGTCTAC 57.524 40.000 0.00 0.00 32.26 2.59
273 274 3.207669 GGCCGCCAGAGATTGCTG 61.208 66.667 3.91 0.00 35.66 4.41
274 275 4.845580 CGGCCGCCAGAGATTGCT 62.846 66.667 14.67 0.00 0.00 3.91
322 323 4.741781 CGCACGAAAAGCTGCCGG 62.742 66.667 0.00 0.00 0.00 6.13
359 360 1.341679 ACCCTAATTCCCGCCCTTTTC 60.342 52.381 0.00 0.00 0.00 2.29
369 370 1.682087 GCCACTCACCACCCTAATTCC 60.682 57.143 0.00 0.00 0.00 3.01
372 373 1.602237 CGCCACTCACCACCCTAAT 59.398 57.895 0.00 0.00 0.00 1.73
382 383 1.138859 CTACAATCATCCCGCCACTCA 59.861 52.381 0.00 0.00 0.00 3.41
386 387 1.688735 CTCTCTACAATCATCCCGCCA 59.311 52.381 0.00 0.00 0.00 5.69
398 399 4.520874 CCACTCTTCTCAACACTCTCTACA 59.479 45.833 0.00 0.00 0.00 2.74
417 418 1.153127 TTCCCGCGACAAAACCACT 60.153 52.632 8.23 0.00 0.00 4.00
433 434 0.321671 TGGAGCTAGCACCACTGTTC 59.678 55.000 27.60 8.68 31.92 3.18
441 442 0.577269 CGCGTATTTGGAGCTAGCAC 59.423 55.000 18.83 11.05 0.00 4.40
442 443 0.529773 CCGCGTATTTGGAGCTAGCA 60.530 55.000 18.83 0.00 0.00 3.49
471 472 1.618343 CCCTTGGGCCACTAAAAACTG 59.382 52.381 5.23 0.00 0.00 3.16
479 480 2.450502 AGACACCCTTGGGCCACT 60.451 61.111 5.23 0.00 0.00 4.00
484 485 0.838122 AGGACTCAGACACCCTTGGG 60.838 60.000 3.77 3.77 0.00 4.12
487 488 3.191888 ACATAGGACTCAGACACCCTT 57.808 47.619 0.00 0.00 0.00 3.95
496 497 1.341679 ACACCCGCTACATAGGACTCA 60.342 52.381 0.00 0.00 0.00 3.41
505 506 2.440517 TAGTCCATACACCCGCTACA 57.559 50.000 0.00 0.00 0.00 2.74
506 507 2.095364 CGATAGTCCATACACCCGCTAC 60.095 54.545 0.00 0.00 0.00 3.58
524 525 4.589908 AGCAAATCAGGAGGTTTTACGAT 58.410 39.130 0.00 0.00 0.00 3.73
525 526 4.015872 AGCAAATCAGGAGGTTTTACGA 57.984 40.909 0.00 0.00 0.00 3.43
526 527 4.766404 AAGCAAATCAGGAGGTTTTACG 57.234 40.909 0.00 0.00 0.00 3.18
528 529 6.723298 TCAAAAGCAAATCAGGAGGTTTTA 57.277 33.333 0.00 0.00 39.91 1.52
587 588 7.670979 CCATCCAATGATGTCCCTTATTTATCA 59.329 37.037 2.24 0.00 45.78 2.15
596 597 0.186873 GGCCATCCAATGATGTCCCT 59.813 55.000 0.00 0.00 45.78 4.20
615 616 1.768112 AAACGGTTCGAACGCCACAG 61.768 55.000 21.34 10.65 34.00 3.66
665 666 0.462047 ACCATGATTCTCGAACGGGC 60.462 55.000 0.00 0.00 0.00 6.13
667 668 3.000041 TGAAACCATGATTCTCGAACGG 59.000 45.455 11.07 0.00 0.00 4.44
719 720 6.370442 TCGACGATGGATGTTTCAAATTTACT 59.630 34.615 0.00 0.00 0.00 2.24
723 724 5.818136 ATCGACGATGGATGTTTCAAATT 57.182 34.783 10.09 0.00 0.00 1.82
758 759 3.319122 GGTCAGATTTGAAAAGCAGTGGT 59.681 43.478 0.00 0.00 34.49 4.16
764 765 3.254166 TCTGCTGGTCAGATTTGAAAAGC 59.746 43.478 12.21 12.21 46.34 3.51
847 848 2.284150 TGTTCGCTTTCTTTGACTGACG 59.716 45.455 0.00 0.00 0.00 4.35
895 898 1.443702 GTTGGCGGCCGCTTTTTAG 60.444 57.895 45.23 7.99 41.60 1.85
897 900 3.223589 AGTTGGCGGCCGCTTTTT 61.224 55.556 45.23 27.44 41.60 1.94
939 943 4.680237 GCTGCGGTTTTTGGGGGC 62.680 66.667 0.00 0.00 0.00 5.80
1290 1294 4.873129 CGGTGGAGGATGACGGCG 62.873 72.222 4.80 4.80 0.00 6.46
1389 1393 1.811266 CCGGAGCAGGAACATGACG 60.811 63.158 0.00 0.00 0.00 4.35
1790 1860 1.593196 ACATGTGAACACACTTCCCG 58.407 50.000 9.83 0.00 45.05 5.14
1843 1915 7.417003 GCCCCTAAGTTTTGTCTTAAGTCAAAA 60.417 37.037 26.34 26.34 39.44 2.44
1856 1928 5.931724 CACAAAAATAGGCCCCTAAGTTTTG 59.068 40.000 25.91 25.91 43.66 2.44
1868 1940 3.366052 TCTCCTCCCACAAAAATAGGC 57.634 47.619 0.00 0.00 0.00 3.93
1914 2010 2.099098 CACACACTTCCCAAGTTCAACC 59.901 50.000 0.00 0.00 40.46 3.77
2037 2134 1.134340 ACTGGCAACCTACAACGACAA 60.134 47.619 0.00 0.00 0.00 3.18
2080 2177 5.353111 TCAGTTGTCATGACTTCGTGTAAA 58.647 37.500 25.55 7.11 34.59 2.01
2940 3047 5.367060 ACAGGTAGAGGGCTTAAAAGGATAG 59.633 44.000 0.00 0.00 0.00 2.08
2953 3060 5.710099 TGATAAAGCAAAAACAGGTAGAGGG 59.290 40.000 0.00 0.00 0.00 4.30
3039 3146 7.093289 ACCTACACTGAAATAGCAAGTGTCTAT 60.093 37.037 10.69 0.00 41.95 1.98
3045 3152 4.003648 GCACCTACACTGAAATAGCAAGT 58.996 43.478 0.00 0.00 0.00 3.16
3070 3177 8.011106 GCAAAAATTTCATGTTTGATGTACCAG 58.989 33.333 9.28 0.00 34.80 4.00
3089 3196 4.020839 CAGGAATCCAGAACAGGCAAAAAT 60.021 41.667 0.61 0.00 0.00 1.82
3090 3197 3.321682 CAGGAATCCAGAACAGGCAAAAA 59.678 43.478 0.61 0.00 0.00 1.94
3280 3387 4.232221 AGCAAGAAATTTGAGACAATGCG 58.768 39.130 0.00 0.00 36.45 4.73
3541 4133 0.447406 TTCACCAATGAGCATTCGCG 59.553 50.000 0.00 0.00 45.49 5.87
3637 4229 4.977963 TGACGAGACTTTAAAGTGTAACCG 59.022 41.667 25.17 20.81 39.88 4.44
3656 4248 4.418013 TTCCATAAAATGCACACTGACG 57.582 40.909 0.00 0.00 0.00 4.35
3879 4471 0.440758 TTAACTTTCCGCATGCGACG 59.559 50.000 39.90 24.55 42.83 5.12
3951 4543 7.112122 ACTGTCAGGCTGAACAATAAATCATA 58.888 34.615 20.62 0.00 0.00 2.15
3983 4575 9.921637 AAACTTTGTATCAAAGAACAAAAGTGA 57.078 25.926 23.16 0.00 43.06 3.41
4013 4605 6.767902 GTCAATCATTTAGCAAGGATCCACTA 59.232 38.462 15.82 9.68 32.12 2.74
4060 4652 4.553678 AGTAATTCGGAATGGAGGGAGTA 58.446 43.478 3.59 0.00 0.00 2.59
4061 4653 3.385115 AGTAATTCGGAATGGAGGGAGT 58.615 45.455 3.59 0.00 0.00 3.85
4062 4654 3.553096 CGAGTAATTCGGAATGGAGGGAG 60.553 52.174 3.59 0.00 45.54 4.30
4063 4655 2.364324 CGAGTAATTCGGAATGGAGGGA 59.636 50.000 3.59 0.00 45.54 4.20
4064 4656 2.755650 CGAGTAATTCGGAATGGAGGG 58.244 52.381 3.59 0.00 45.54 4.30
4075 4667 5.545658 TCCATTTCTGCAACGAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
4076 4668 5.415701 ACATCCATTTCTGCAACGAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
4077 4669 4.943705 ACATCCATTTCTGCAACGAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
4078 4670 4.323417 ACATCCATTTCTGCAACGAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
4079 4671 3.937814 ACATCCATTTCTGCAACGAGTA 58.062 40.909 0.00 0.00 0.00 2.59
4080 4672 2.783135 ACATCCATTTCTGCAACGAGT 58.217 42.857 0.00 0.00 0.00 4.18
4081 4673 4.813161 AGATACATCCATTTCTGCAACGAG 59.187 41.667 0.00 0.00 0.00 4.18
4082 4674 4.769688 AGATACATCCATTTCTGCAACGA 58.230 39.130 0.00 0.00 0.00 3.85
4083 4675 5.985530 TCTAGATACATCCATTTCTGCAACG 59.014 40.000 0.00 0.00 0.00 4.10
4084 4676 7.443575 ACATCTAGATACATCCATTTCTGCAAC 59.556 37.037 4.54 0.00 0.00 4.17
4085 4677 7.512130 ACATCTAGATACATCCATTTCTGCAA 58.488 34.615 4.54 0.00 0.00 4.08
4086 4678 7.071069 ACATCTAGATACATCCATTTCTGCA 57.929 36.000 4.54 0.00 0.00 4.41
4087 4679 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
4116 4708 9.178758 GTCCCAGAAATGAATGTATCTAAAACT 57.821 33.333 0.00 0.00 0.00 2.66
4117 4709 8.122952 CGTCCCAGAAATGAATGTATCTAAAAC 58.877 37.037 0.00 0.00 0.00 2.43
4118 4710 8.044309 TCGTCCCAGAAATGAATGTATCTAAAA 58.956 33.333 0.00 0.00 0.00 1.52
4119 4711 7.561251 TCGTCCCAGAAATGAATGTATCTAAA 58.439 34.615 0.00 0.00 0.00 1.85
4120 4712 7.119709 TCGTCCCAGAAATGAATGTATCTAA 57.880 36.000 0.00 0.00 0.00 2.10
4121 4713 6.323996 ACTCGTCCCAGAAATGAATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
4122 4714 5.129485 ACTCGTCCCAGAAATGAATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
4123 4715 5.360591 ACTCGTCCCAGAAATGAATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
4124 4716 5.359194 ACTCGTCCCAGAAATGAATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4125 4717 4.819105 ACTCGTCCCAGAAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4126 4718 3.703001 ACTCGTCCCAGAAATGAATGT 57.297 42.857 0.00 0.00 0.00 2.71
4127 4719 6.683974 AATTACTCGTCCCAGAAATGAATG 57.316 37.500 0.00 0.00 0.00 2.67
4128 4720 6.095440 CCAAATTACTCGTCCCAGAAATGAAT 59.905 38.462 0.00 0.00 0.00 2.57
4129 4721 5.414454 CCAAATTACTCGTCCCAGAAATGAA 59.586 40.000 0.00 0.00 0.00 2.57
4130 4722 4.941263 CCAAATTACTCGTCCCAGAAATGA 59.059 41.667 0.00 0.00 0.00 2.57
4131 4723 4.941263 TCCAAATTACTCGTCCCAGAAATG 59.059 41.667 0.00 0.00 0.00 2.32
4132 4724 5.174037 TCCAAATTACTCGTCCCAGAAAT 57.826 39.130 0.00 0.00 0.00 2.17
4133 4725 4.627284 TCCAAATTACTCGTCCCAGAAA 57.373 40.909 0.00 0.00 0.00 2.52
4134 4726 4.320870 GTTCCAAATTACTCGTCCCAGAA 58.679 43.478 0.00 0.00 0.00 3.02
4135 4727 3.615592 CGTTCCAAATTACTCGTCCCAGA 60.616 47.826 0.00 0.00 0.00 3.86
4136 4728 2.671396 CGTTCCAAATTACTCGTCCCAG 59.329 50.000 0.00 0.00 0.00 4.45
4137 4729 2.613474 CCGTTCCAAATTACTCGTCCCA 60.613 50.000 0.00 0.00 0.00 4.37
4138 4730 2.004733 CCGTTCCAAATTACTCGTCCC 58.995 52.381 0.00 0.00 0.00 4.46
4139 4731 2.928116 CTCCGTTCCAAATTACTCGTCC 59.072 50.000 0.00 0.00 0.00 4.79
4140 4732 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4141 4733 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4142 4734 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4143 4735 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4144 4736 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4145 4737 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4146 4738 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
4147 4739 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
4148 4740 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
4149 4741 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4150 4742 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
4151 4743 1.553706 GAAGTACTCCCTCCGTTCCA 58.446 55.000 0.00 0.00 0.00 3.53
4152 4744 0.455005 CGAAGTACTCCCTCCGTTCC 59.545 60.000 0.00 0.00 0.00 3.62
4153 4745 1.172175 ACGAAGTACTCCCTCCGTTC 58.828 55.000 0.00 0.00 41.94 3.95
4154 4746 2.496899 TACGAAGTACTCCCTCCGTT 57.503 50.000 0.00 0.00 45.11 4.44
4227 4821 2.628657 AGCCTGTACCGGAATCAGATAC 59.371 50.000 9.46 0.00 0.00 2.24
4860 5457 0.326264 GGTCCTCTGAACTGCCATGT 59.674 55.000 0.00 0.00 0.00 3.21
5224 5821 0.452585 TGTCACGCGATGAATACCGA 59.547 50.000 15.93 0.00 39.72 4.69
5426 6023 7.275560 GCACATATCGAGCATATTGTGTGTATA 59.724 37.037 11.36 0.00 33.44 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.