Multiple sequence alignment - TraesCS7A01G248800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G248800 chr7A 100.000 5518 0 0 1 5518 230861691 230867208 0.000000e+00 10190.0
1 TraesCS7A01G248800 chr7D 92.412 2570 94 30 598 3073 217996795 217999357 0.000000e+00 3572.0
2 TraesCS7A01G248800 chr7D 90.025 1624 96 33 3915 5514 218000199 218001780 0.000000e+00 2041.0
3 TraesCS7A01G248800 chr7D 93.415 820 33 9 3072 3884 217999420 218000225 0.000000e+00 1195.0
4 TraesCS7A01G248800 chr7D 85.329 334 17 12 1 303 217996472 217996804 3.210000e-82 316.0
5 TraesCS7A01G248800 chr7D 92.857 42 3 0 195 236 84428595 84428554 1.660000e-05 62.1
6 TraesCS7A01G248800 chr7B 94.452 2091 80 14 598 2661 181686646 181684565 0.000000e+00 3186.0
7 TraesCS7A01G248800 chr7B 90.399 1552 75 31 3915 5424 181683245 181681726 0.000000e+00 1973.0
8 TraesCS7A01G248800 chr7B 95.000 820 32 7 3072 3884 181684036 181683219 0.000000e+00 1279.0
9 TraesCS7A01G248800 chr7B 87.061 456 27 10 2645 3073 181684548 181684098 2.310000e-133 486.0
10 TraesCS7A01G248800 chr7B 83.832 334 22 15 1 303 181686969 181686637 6.990000e-74 289.0
11 TraesCS7A01G248800 chr7B 90.233 215 19 2 297 509 477816965 477817179 4.210000e-71 279.0
12 TraesCS7A01G248800 chr7B 87.850 214 22 2 297 509 483863586 483863796 1.190000e-61 248.0
13 TraesCS7A01G248800 chr5D 83.550 845 118 14 1073 1896 379572575 379573419 0.000000e+00 771.0
14 TraesCS7A01G248800 chr5D 86.441 177 24 0 2180 2356 379573612 379573788 1.570000e-45 195.0
15 TraesCS7A01G248800 chr5A 82.898 842 126 13 1073 1896 480172786 480173627 0.000000e+00 741.0
16 TraesCS7A01G248800 chr5A 89.100 211 22 1 300 509 577888404 577888194 1.520000e-65 261.0
17 TraesCS7A01G248800 chr5A 85.876 177 25 0 2180 2356 480173815 480173991 7.300000e-44 189.0
18 TraesCS7A01G248800 chr5B 82.660 842 125 11 1073 1896 455506065 455506903 0.000000e+00 726.0
19 TraesCS7A01G248800 chr5B 85.876 177 25 0 2180 2356 455507101 455507277 7.300000e-44 189.0
20 TraesCS7A01G248800 chr2A 89.952 209 20 1 302 509 389542417 389542209 9.110000e-68 268.0
21 TraesCS7A01G248800 chr2D 89.524 210 20 2 300 508 552068874 552068666 1.180000e-66 265.0
22 TraesCS7A01G248800 chr2B 89.252 214 19 2 297 509 359484171 359484381 1.180000e-66 265.0
23 TraesCS7A01G248800 chr3B 88.785 214 22 2 297 509 740344431 740344643 1.520000e-65 261.0
24 TraesCS7A01G248800 chr1B 88.626 211 23 1 300 509 189765238 189765028 7.090000e-64 255.0
25 TraesCS7A01G248800 chr6D 87.383 214 26 1 297 509 108812815 108813028 1.540000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G248800 chr7A 230861691 230867208 5517 False 10190.0 10190 100.00000 1 5518 1 chr7A.!!$F1 5517
1 TraesCS7A01G248800 chr7D 217996472 218001780 5308 False 1781.0 3572 90.29525 1 5514 4 chr7D.!!$F1 5513
2 TraesCS7A01G248800 chr7B 181681726 181686969 5243 True 1442.6 3186 90.14880 1 5424 5 chr7B.!!$R1 5423
3 TraesCS7A01G248800 chr5D 379572575 379573788 1213 False 483.0 771 84.99550 1073 2356 2 chr5D.!!$F1 1283
4 TraesCS7A01G248800 chr5A 480172786 480173991 1205 False 465.0 741 84.38700 1073 2356 2 chr5A.!!$F1 1283
5 TraesCS7A01G248800 chr5B 455506065 455507277 1212 False 457.5 726 84.26800 1073 2356 2 chr5B.!!$F1 1283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 539 0.107831 CGAGGGGTGGTGTGAAGAAA 59.892 55.0 0.00 0.0 0.0 2.52 F
542 574 0.108138 GGACGAGGGGTGATGTGAAG 60.108 60.0 0.00 0.0 0.0 3.02 F
2381 2483 0.250553 CCCTTTGCCACCACGAACTA 60.251 55.0 0.00 0.0 0.0 2.24 F
2544 2669 0.178987 TTAGGGCCCGTTTTCAGCAA 60.179 50.0 18.44 0.0 0.0 3.91 F
3263 3519 0.532862 AGTCTGTGGTTTGTGAGGCG 60.533 55.0 0.00 0.0 0.0 5.52 F
3913 4171 0.305922 GGCTCAGATGCGGATTTTCG 59.694 55.0 0.00 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2362 2463 0.250553 TAGTTCGTGGTGGCAAAGGG 60.251 55.0 0.00 0.00 0.00 3.95 R
2530 2655 0.603065 AATCCTTGCTGAAAACGGGC 59.397 50.0 0.00 0.00 0.00 6.13 R
3434 3690 0.033228 TTTCCACATTTTGCGCAGGG 59.967 50.0 11.31 7.06 0.00 4.45 R
3894 4152 0.305922 CGAAAATCCGCATCTGAGCC 59.694 55.0 0.00 0.00 0.00 4.70 R
4492 4752 0.462759 ACTTAGAGATGCCGCCTTGC 60.463 55.0 0.00 0.00 0.00 4.01 R
5435 5755 0.971447 GGAGCCCGTCTAGGTCAGTT 60.971 60.0 0.00 0.00 38.74 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 29 7.818930 CACATACCATAAATTTGTCTTTTGCCT 59.181 33.333 0.00 0.00 0.00 4.75
98 101 2.420022 ACCTACGCATCTTTCATGCAAC 59.580 45.455 7.32 0.00 44.75 4.17
182 214 7.009631 CACAGTCGGTCTGAATCAACTATAAAG 59.990 40.741 9.21 0.00 46.27 1.85
260 292 2.484264 CCTTCAACAACTTAGAAGCCCG 59.516 50.000 0.00 0.00 37.91 6.13
317 349 9.559958 TTTACTAAAAATCTTCTAGTACGTCGG 57.440 33.333 0.00 0.00 29.90 4.79
318 350 6.032717 ACTAAAAATCTTCTAGTACGTCGGC 58.967 40.000 0.00 0.00 0.00 5.54
319 351 4.715527 AAAATCTTCTAGTACGTCGGCT 57.284 40.909 0.00 0.00 0.00 5.52
320 352 4.715527 AAATCTTCTAGTACGTCGGCTT 57.284 40.909 0.00 0.00 0.00 4.35
321 353 5.824904 AAATCTTCTAGTACGTCGGCTTA 57.175 39.130 0.00 0.00 0.00 3.09
322 354 6.388435 AAATCTTCTAGTACGTCGGCTTAT 57.612 37.500 0.00 0.00 0.00 1.73
323 355 4.808077 TCTTCTAGTACGTCGGCTTATG 57.192 45.455 0.00 0.00 0.00 1.90
324 356 4.445453 TCTTCTAGTACGTCGGCTTATGA 58.555 43.478 0.00 0.00 0.00 2.15
325 357 5.061853 TCTTCTAGTACGTCGGCTTATGAT 58.938 41.667 0.00 0.00 0.00 2.45
326 358 5.530171 TCTTCTAGTACGTCGGCTTATGATT 59.470 40.000 0.00 0.00 0.00 2.57
327 359 5.762825 TCTAGTACGTCGGCTTATGATTT 57.237 39.130 0.00 0.00 0.00 2.17
328 360 6.866010 TCTAGTACGTCGGCTTATGATTTA 57.134 37.500 0.00 0.00 0.00 1.40
329 361 7.444629 TCTAGTACGTCGGCTTATGATTTAT 57.555 36.000 0.00 0.00 0.00 1.40
330 362 7.524912 TCTAGTACGTCGGCTTATGATTTATC 58.475 38.462 0.00 0.00 0.00 1.75
331 363 6.328641 AGTACGTCGGCTTATGATTTATCT 57.671 37.500 0.00 0.00 0.00 1.98
332 364 6.150318 AGTACGTCGGCTTATGATTTATCTG 58.850 40.000 0.00 0.00 0.00 2.90
333 365 4.945246 ACGTCGGCTTATGATTTATCTGT 58.055 39.130 0.00 0.00 0.00 3.41
334 366 4.982916 ACGTCGGCTTATGATTTATCTGTC 59.017 41.667 0.00 0.00 0.00 3.51
335 367 5.221263 ACGTCGGCTTATGATTTATCTGTCT 60.221 40.000 0.00 0.00 0.00 3.41
336 368 6.016527 ACGTCGGCTTATGATTTATCTGTCTA 60.017 38.462 0.00 0.00 0.00 2.59
337 369 7.030165 CGTCGGCTTATGATTTATCTGTCTAT 58.970 38.462 0.00 0.00 0.00 1.98
338 370 8.182227 CGTCGGCTTATGATTTATCTGTCTATA 58.818 37.037 0.00 0.00 0.00 1.31
339 371 9.856488 GTCGGCTTATGATTTATCTGTCTATAA 57.144 33.333 0.00 0.00 0.00 0.98
355 387 9.974980 TCTGTCTATAATAATGCGATTGTGTAA 57.025 29.630 0.00 0.00 0.00 2.41
366 398 6.976636 TGCGATTGTGTAAATAACTGATCA 57.023 33.333 0.00 0.00 0.00 2.92
367 399 7.552458 TGCGATTGTGTAAATAACTGATCAT 57.448 32.000 0.00 0.00 0.00 2.45
368 400 7.984391 TGCGATTGTGTAAATAACTGATCATT 58.016 30.769 0.00 0.00 0.00 2.57
369 401 9.103861 TGCGATTGTGTAAATAACTGATCATTA 57.896 29.630 0.00 0.00 0.00 1.90
370 402 9.929722 GCGATTGTGTAAATAACTGATCATTAA 57.070 29.630 0.00 0.00 0.00 1.40
383 415 8.827832 AACTGATCATTAAATTCTTCCCATGA 57.172 30.769 0.00 0.00 0.00 3.07
384 416 8.827832 ACTGATCATTAAATTCTTCCCATGAA 57.172 30.769 0.00 0.00 0.00 2.57
385 417 9.430399 ACTGATCATTAAATTCTTCCCATGAAT 57.570 29.630 0.00 0.00 35.88 2.57
390 422 9.713684 TCATTAAATTCTTCCCATGAATTACCT 57.286 29.630 0.00 0.00 41.54 3.08
399 431 9.502091 TCTTCCCATGAATTACCTTATATTTCG 57.498 33.333 0.00 0.00 0.00 3.46
400 432 9.502091 CTTCCCATGAATTACCTTATATTTCGA 57.498 33.333 0.00 0.00 0.00 3.71
402 434 9.667107 TCCCATGAATTACCTTATATTTCGATC 57.333 33.333 0.00 0.00 0.00 3.69
403 435 8.893727 CCCATGAATTACCTTATATTTCGATCC 58.106 37.037 0.00 0.00 0.00 3.36
404 436 8.604035 CCATGAATTACCTTATATTTCGATCCG 58.396 37.037 0.00 0.00 0.00 4.18
405 437 9.366216 CATGAATTACCTTATATTTCGATCCGA 57.634 33.333 0.00 0.00 0.00 4.55
406 438 9.938280 ATGAATTACCTTATATTTCGATCCGAA 57.062 29.630 0.00 0.00 44.28 4.30
407 439 9.419297 TGAATTACCTTATATTTCGATCCGAAG 57.581 33.333 2.06 0.00 46.43 3.79
408 440 9.420551 GAATTACCTTATATTTCGATCCGAAGT 57.579 33.333 2.06 2.52 46.43 3.01
409 441 9.774413 AATTACCTTATATTTCGATCCGAAGTT 57.226 29.630 2.70 0.00 46.43 2.66
410 442 9.774413 ATTACCTTATATTTCGATCCGAAGTTT 57.226 29.630 2.70 0.00 46.43 2.66
411 443 9.603921 TTACCTTATATTTCGATCCGAAGTTTT 57.396 29.630 2.70 0.00 46.43 2.43
412 444 7.916552 ACCTTATATTTCGATCCGAAGTTTTG 58.083 34.615 2.70 0.00 46.43 2.44
413 445 7.551617 ACCTTATATTTCGATCCGAAGTTTTGT 59.448 33.333 2.70 0.00 46.43 2.83
414 446 9.037737 CCTTATATTTCGATCCGAAGTTTTGTA 57.962 33.333 2.70 0.00 46.43 2.41
417 449 6.796705 ATTTCGATCCGAAGTTTTGTAAGT 57.203 33.333 2.06 0.00 46.43 2.24
418 450 7.894376 ATTTCGATCCGAAGTTTTGTAAGTA 57.106 32.000 2.06 0.00 46.43 2.24
419 451 7.712264 TTTCGATCCGAAGTTTTGTAAGTAA 57.288 32.000 2.06 0.00 46.43 2.24
420 452 7.712264 TTCGATCCGAAGTTTTGTAAGTAAA 57.288 32.000 0.00 0.00 41.05 2.01
421 453 7.894376 TCGATCCGAAGTTTTGTAAGTAAAT 57.106 32.000 0.00 0.00 31.06 1.40
422 454 8.314143 TCGATCCGAAGTTTTGTAAGTAAATT 57.686 30.769 0.00 0.00 31.06 1.82
423 455 9.421806 TCGATCCGAAGTTTTGTAAGTAAATTA 57.578 29.630 0.00 0.00 31.06 1.40
444 476 9.524106 AAATTAAAGTAAAACTGGTTCGAAAGG 57.476 29.630 0.00 0.00 0.00 3.11
445 477 7.628769 TTAAAGTAAAACTGGTTCGAAAGGT 57.371 32.000 0.00 0.00 0.00 3.50
446 478 8.729805 TTAAAGTAAAACTGGTTCGAAAGGTA 57.270 30.769 0.00 0.00 0.00 3.08
447 479 7.628769 AAAGTAAAACTGGTTCGAAAGGTAA 57.371 32.000 0.00 0.00 0.00 2.85
448 480 6.856135 AGTAAAACTGGTTCGAAAGGTAAG 57.144 37.500 0.00 0.00 0.00 2.34
449 481 6.351711 AGTAAAACTGGTTCGAAAGGTAAGT 58.648 36.000 0.00 0.00 0.00 2.24
450 482 7.500141 AGTAAAACTGGTTCGAAAGGTAAGTA 58.500 34.615 0.00 0.00 0.00 2.24
451 483 7.986889 AGTAAAACTGGTTCGAAAGGTAAGTAA 59.013 33.333 0.00 0.00 0.00 2.24
452 484 7.628769 AAAACTGGTTCGAAAGGTAAGTAAA 57.371 32.000 0.00 0.00 0.00 2.01
453 485 7.812690 AAACTGGTTCGAAAGGTAAGTAAAT 57.187 32.000 0.00 0.00 0.00 1.40
454 486 7.812690 AACTGGTTCGAAAGGTAAGTAAATT 57.187 32.000 0.00 0.00 0.00 1.82
455 487 8.907222 AACTGGTTCGAAAGGTAAGTAAATTA 57.093 30.769 0.00 0.00 0.00 1.40
456 488 8.907222 ACTGGTTCGAAAGGTAAGTAAATTAA 57.093 30.769 0.00 0.00 0.00 1.40
457 489 9.341078 ACTGGTTCGAAAGGTAAGTAAATTAAA 57.659 29.630 0.00 0.00 0.00 1.52
489 521 6.978343 TTATCATACAAGGAAAGTTGGACG 57.022 37.500 0.00 0.00 0.00 4.79
490 522 4.610605 TCATACAAGGAAAGTTGGACGA 57.389 40.909 0.00 0.00 0.00 4.20
491 523 4.566004 TCATACAAGGAAAGTTGGACGAG 58.434 43.478 0.00 0.00 0.00 4.18
492 524 2.256117 ACAAGGAAAGTTGGACGAGG 57.744 50.000 0.00 0.00 0.00 4.63
493 525 1.202770 ACAAGGAAAGTTGGACGAGGG 60.203 52.381 0.00 0.00 0.00 4.30
494 526 0.400594 AAGGAAAGTTGGACGAGGGG 59.599 55.000 0.00 0.00 0.00 4.79
495 527 0.767060 AGGAAAGTTGGACGAGGGGT 60.767 55.000 0.00 0.00 0.00 4.95
496 528 0.605589 GGAAAGTTGGACGAGGGGTG 60.606 60.000 0.00 0.00 0.00 4.61
497 529 0.605589 GAAAGTTGGACGAGGGGTGG 60.606 60.000 0.00 0.00 0.00 4.61
498 530 1.350310 AAAGTTGGACGAGGGGTGGT 61.350 55.000 0.00 0.00 0.00 4.16
499 531 2.032071 GTTGGACGAGGGGTGGTG 59.968 66.667 0.00 0.00 0.00 4.17
500 532 2.446994 TTGGACGAGGGGTGGTGT 60.447 61.111 0.00 0.00 0.00 4.16
501 533 2.813726 TTGGACGAGGGGTGGTGTG 61.814 63.158 0.00 0.00 0.00 3.82
502 534 2.920912 GGACGAGGGGTGGTGTGA 60.921 66.667 0.00 0.00 0.00 3.58
503 535 2.513259 GGACGAGGGGTGGTGTGAA 61.513 63.158 0.00 0.00 0.00 3.18
504 536 1.004918 GACGAGGGGTGGTGTGAAG 60.005 63.158 0.00 0.00 0.00 3.02
505 537 1.458777 ACGAGGGGTGGTGTGAAGA 60.459 57.895 0.00 0.00 0.00 2.87
506 538 1.052124 ACGAGGGGTGGTGTGAAGAA 61.052 55.000 0.00 0.00 0.00 2.52
507 539 0.107831 CGAGGGGTGGTGTGAAGAAA 59.892 55.000 0.00 0.00 0.00 2.52
508 540 1.878102 CGAGGGGTGGTGTGAAGAAAG 60.878 57.143 0.00 0.00 0.00 2.62
509 541 1.420138 GAGGGGTGGTGTGAAGAAAGA 59.580 52.381 0.00 0.00 0.00 2.52
510 542 2.040412 GAGGGGTGGTGTGAAGAAAGAT 59.960 50.000 0.00 0.00 0.00 2.40
511 543 3.256704 AGGGGTGGTGTGAAGAAAGATA 58.743 45.455 0.00 0.00 0.00 1.98
512 544 3.009143 AGGGGTGGTGTGAAGAAAGATAC 59.991 47.826 0.00 0.00 0.00 2.24
513 545 3.244770 GGGGTGGTGTGAAGAAAGATACA 60.245 47.826 0.00 0.00 0.00 2.29
514 546 4.394729 GGGTGGTGTGAAGAAAGATACAA 58.605 43.478 0.00 0.00 0.00 2.41
515 547 4.455877 GGGTGGTGTGAAGAAAGATACAAG 59.544 45.833 0.00 0.00 0.00 3.16
516 548 4.455877 GGTGGTGTGAAGAAAGATACAAGG 59.544 45.833 0.00 0.00 0.00 3.61
517 549 5.305585 GTGGTGTGAAGAAAGATACAAGGA 58.694 41.667 0.00 0.00 0.00 3.36
518 550 5.763204 GTGGTGTGAAGAAAGATACAAGGAA 59.237 40.000 0.00 0.00 0.00 3.36
519 551 6.262273 GTGGTGTGAAGAAAGATACAAGGAAA 59.738 38.462 0.00 0.00 0.00 3.13
520 552 6.486657 TGGTGTGAAGAAAGATACAAGGAAAG 59.513 38.462 0.00 0.00 0.00 2.62
521 553 6.486993 GGTGTGAAGAAAGATACAAGGAAAGT 59.513 38.462 0.00 0.00 0.00 2.66
522 554 7.013369 GGTGTGAAGAAAGATACAAGGAAAGTT 59.987 37.037 0.00 0.00 0.00 2.66
523 555 7.857885 GTGTGAAGAAAGATACAAGGAAAGTTG 59.142 37.037 0.00 0.00 0.00 3.16
524 556 7.013274 TGTGAAGAAAGATACAAGGAAAGTTGG 59.987 37.037 0.00 0.00 0.00 3.77
525 557 7.228706 GTGAAGAAAGATACAAGGAAAGTTGGA 59.771 37.037 0.00 0.00 0.00 3.53
526 558 7.228706 TGAAGAAAGATACAAGGAAAGTTGGAC 59.771 37.037 0.00 0.00 0.00 4.02
527 559 5.701290 AGAAAGATACAAGGAAAGTTGGACG 59.299 40.000 0.00 0.00 0.00 4.79
528 560 4.884668 AGATACAAGGAAAGTTGGACGA 57.115 40.909 0.00 0.00 0.00 4.20
529 561 4.822026 AGATACAAGGAAAGTTGGACGAG 58.178 43.478 0.00 0.00 0.00 4.18
530 562 2.256117 ACAAGGAAAGTTGGACGAGG 57.744 50.000 0.00 0.00 0.00 4.63
531 563 1.202770 ACAAGGAAAGTTGGACGAGGG 60.203 52.381 0.00 0.00 0.00 4.30
532 564 0.400594 AAGGAAAGTTGGACGAGGGG 59.599 55.000 0.00 0.00 0.00 4.79
533 565 0.767060 AGGAAAGTTGGACGAGGGGT 60.767 55.000 0.00 0.00 0.00 4.95
534 566 0.605589 GGAAAGTTGGACGAGGGGTG 60.606 60.000 0.00 0.00 0.00 4.61
535 567 0.395312 GAAAGTTGGACGAGGGGTGA 59.605 55.000 0.00 0.00 0.00 4.02
536 568 1.003233 GAAAGTTGGACGAGGGGTGAT 59.997 52.381 0.00 0.00 0.00 3.06
537 569 0.324943 AAGTTGGACGAGGGGTGATG 59.675 55.000 0.00 0.00 0.00 3.07
538 570 0.836400 AGTTGGACGAGGGGTGATGT 60.836 55.000 0.00 0.00 0.00 3.06
539 571 0.673644 GTTGGACGAGGGGTGATGTG 60.674 60.000 0.00 0.00 0.00 3.21
540 572 0.834261 TTGGACGAGGGGTGATGTGA 60.834 55.000 0.00 0.00 0.00 3.58
541 573 0.834261 TGGACGAGGGGTGATGTGAA 60.834 55.000 0.00 0.00 0.00 3.18
542 574 0.108138 GGACGAGGGGTGATGTGAAG 60.108 60.000 0.00 0.00 0.00 3.02
543 575 0.895530 GACGAGGGGTGATGTGAAGA 59.104 55.000 0.00 0.00 0.00 2.87
544 576 1.275291 GACGAGGGGTGATGTGAAGAA 59.725 52.381 0.00 0.00 0.00 2.52
545 577 1.697432 ACGAGGGGTGATGTGAAGAAA 59.303 47.619 0.00 0.00 0.00 2.52
546 578 2.289694 ACGAGGGGTGATGTGAAGAAAG 60.290 50.000 0.00 0.00 0.00 2.62
547 579 2.028112 CGAGGGGTGATGTGAAGAAAGA 60.028 50.000 0.00 0.00 0.00 2.52
548 580 3.369892 CGAGGGGTGATGTGAAGAAAGAT 60.370 47.826 0.00 0.00 0.00 2.40
549 581 3.944015 GAGGGGTGATGTGAAGAAAGATG 59.056 47.826 0.00 0.00 0.00 2.90
550 582 3.588842 AGGGGTGATGTGAAGAAAGATGA 59.411 43.478 0.00 0.00 0.00 2.92
551 583 4.043310 AGGGGTGATGTGAAGAAAGATGAA 59.957 41.667 0.00 0.00 0.00 2.57
552 584 4.766891 GGGGTGATGTGAAGAAAGATGAAA 59.233 41.667 0.00 0.00 0.00 2.69
553 585 5.420104 GGGGTGATGTGAAGAAAGATGAAAT 59.580 40.000 0.00 0.00 0.00 2.17
554 586 6.603201 GGGGTGATGTGAAGAAAGATGAAATA 59.397 38.462 0.00 0.00 0.00 1.40
555 587 7.122650 GGGGTGATGTGAAGAAAGATGAAATAA 59.877 37.037 0.00 0.00 0.00 1.40
556 588 8.522830 GGGTGATGTGAAGAAAGATGAAATAAA 58.477 33.333 0.00 0.00 0.00 1.40
557 589 9.912634 GGTGATGTGAAGAAAGATGAAATAAAA 57.087 29.630 0.00 0.00 0.00 1.52
612 644 8.420222 AGAGATAGGGATATAGAAAATGCATCG 58.580 37.037 0.00 0.00 0.00 3.84
630 662 4.492570 GCATCGTTCCAGATTTTACTCGTG 60.493 45.833 0.00 0.00 0.00 4.35
640 672 7.277098 TCCAGATTTTACTCGTGTTATTACTGC 59.723 37.037 0.00 0.00 0.00 4.40
721 753 3.188048 AGTCCAAAGAGAGTACGTGTACG 59.812 47.826 0.00 2.43 46.33 3.67
854 886 1.964891 CTGCCACTGCCACTGACAG 60.965 63.158 0.00 0.00 41.08 3.51
1028 1062 4.173924 GCAGAGGCAGAGGAGGGC 62.174 72.222 0.00 0.00 40.72 5.19
1680 1741 2.887360 GGCCAGCGGTTCTACGTA 59.113 61.111 0.00 0.00 35.98 3.57
1954 2031 3.932710 ACGACGAACTTATGATGCAACAT 59.067 39.130 14.36 14.36 0.00 2.71
2092 2175 1.210234 CTGGTGCAGGATGATGGTACA 59.790 52.381 0.00 0.00 39.69 2.90
2125 2223 9.014297 ACTTGTCAAATATTTCTCCTTTGTAGG 57.986 33.333 0.00 0.00 43.46 3.18
2126 2225 8.934023 TTGTCAAATATTTCTCCTTTGTAGGT 57.066 30.769 0.00 0.00 42.60 3.08
2357 2458 6.604171 TGGATGTCATTAGCATATCAGGTTT 58.396 36.000 0.00 0.00 0.00 3.27
2362 2463 6.038603 TGTCATTAGCATATCAGGTTTGCTTC 59.961 38.462 3.74 0.00 43.94 3.86
2363 2464 5.532406 TCATTAGCATATCAGGTTTGCTTCC 59.468 40.000 3.74 0.00 43.94 3.46
2376 2478 2.919494 GCTTCCCTTTGCCACCACG 61.919 63.158 0.00 0.00 0.00 4.94
2377 2479 1.228124 CTTCCCTTTGCCACCACGA 60.228 57.895 0.00 0.00 0.00 4.35
2378 2480 0.821711 CTTCCCTTTGCCACCACGAA 60.822 55.000 0.00 0.00 0.00 3.85
2380 2482 1.528309 CCCTTTGCCACCACGAACT 60.528 57.895 0.00 0.00 0.00 3.01
2381 2483 0.250553 CCCTTTGCCACCACGAACTA 60.251 55.000 0.00 0.00 0.00 2.24
2382 2484 0.872388 CCTTTGCCACCACGAACTAC 59.128 55.000 0.00 0.00 0.00 2.73
2383 2485 1.542547 CCTTTGCCACCACGAACTACT 60.543 52.381 0.00 0.00 0.00 2.57
2413 2521 6.013379 TCACTTGAGTCACCTAATCTTCTCT 58.987 40.000 0.00 0.00 0.00 3.10
2421 2529 8.830915 AGTCACCTAATCTTCTCTTCAGAATA 57.169 34.615 0.00 0.00 38.02 1.75
2448 2556 7.939784 ATTCCTAGTCACAACCTTTATTTCC 57.060 36.000 0.00 0.00 0.00 3.13
2504 2629 8.682936 AAACCTTCATATAATAAGCAGAGTGG 57.317 34.615 0.00 0.00 0.00 4.00
2513 2638 2.226962 AAGCAGAGTGGCCATTTGAT 57.773 45.000 9.72 3.54 0.00 2.57
2515 2640 1.005097 AGCAGAGTGGCCATTTGATGA 59.995 47.619 9.72 0.00 0.00 2.92
2530 2655 7.094634 GCCATTTGATGATACACATAGTTAGGG 60.095 40.741 0.00 0.00 39.56 3.53
2544 2669 0.178987 TTAGGGCCCGTTTTCAGCAA 60.179 50.000 18.44 0.00 0.00 3.91
2573 2698 3.206150 CAAGGATAAGTTGGCGCACTAT 58.794 45.455 10.83 0.00 0.00 2.12
2583 2708 4.881273 AGTTGGCGCACTATTGAATTATCA 59.119 37.500 10.83 0.00 0.00 2.15
2640 2765 7.415592 TGGCATGTTCAATCAAAATATACCA 57.584 32.000 0.00 0.00 0.00 3.25
2681 2839 1.468520 CTGAACCAACTTGGCATACCG 59.531 52.381 7.81 0.00 42.67 4.02
2688 2846 3.945285 CCAACTTGGCATACCGTAAGATT 59.055 43.478 0.00 0.00 39.70 2.40
2729 2887 3.581265 TGCCATGATGCATTAGGAAGA 57.419 42.857 14.86 0.00 36.04 2.87
2733 2891 5.364446 TGCCATGATGCATTAGGAAGATTTT 59.636 36.000 14.86 0.00 36.04 1.82
2850 3024 8.170730 AGTATCTGGAACCACCTTTATTCTTTT 58.829 33.333 0.00 0.00 39.86 2.27
2852 3026 8.950007 ATCTGGAACCACCTTTATTCTTTTAA 57.050 30.769 0.00 0.00 39.86 1.52
2853 3027 8.173542 TCTGGAACCACCTTTATTCTTTTAAC 57.826 34.615 0.00 0.00 39.86 2.01
2854 3028 8.002459 TCTGGAACCACCTTTATTCTTTTAACT 58.998 33.333 0.00 0.00 39.86 2.24
2915 3089 7.652105 AGCTGCAAGAATAATTATGCAAGAATG 59.348 33.333 11.50 2.99 46.97 2.67
2928 3102 8.876275 TTATGCAAGAATGAATATTTGAAGCC 57.124 30.769 0.00 0.00 26.81 4.35
2950 3124 0.604578 CACATCACTGGGCCCTTTTG 59.395 55.000 25.70 17.01 0.00 2.44
2973 3150 8.928270 TTGTTTTTACACAAATTAACACCGAT 57.072 26.923 0.00 0.00 33.60 4.18
2976 3153 6.879276 TTTACACAAATTAACACCGATCCA 57.121 33.333 0.00 0.00 0.00 3.41
3015 3200 0.695924 TGGAACCCGATCCATGTTGT 59.304 50.000 1.05 0.00 44.52 3.32
3016 3201 1.339631 TGGAACCCGATCCATGTTGTC 60.340 52.381 1.05 0.00 44.52 3.18
3017 3202 1.065418 GGAACCCGATCCATGTTGTCT 60.065 52.381 0.00 0.00 39.42 3.41
3024 3209 3.561310 CCGATCCATGTTGTCTTGTATGG 59.439 47.826 0.00 0.00 41.09 2.74
3027 3212 2.916269 TCCATGTTGTCTTGTATGGGGA 59.084 45.455 0.00 0.00 40.33 4.81
3028 3213 3.332187 TCCATGTTGTCTTGTATGGGGAA 59.668 43.478 0.00 0.00 40.33 3.97
3030 3215 4.158394 CCATGTTGTCTTGTATGGGGAAAG 59.842 45.833 0.00 0.00 37.11 2.62
3048 3233 5.249420 GGAAAGAACAGCCTAGTCATCTTT 58.751 41.667 0.00 0.00 39.19 2.52
3175 3431 9.753674 TTCCAATCTGATTAGTATCTTTTGGTT 57.246 29.630 1.98 0.00 36.80 3.67
3260 3516 1.334869 GGCAAGTCTGTGGTTTGTGAG 59.665 52.381 0.00 0.00 0.00 3.51
3263 3519 0.532862 AGTCTGTGGTTTGTGAGGCG 60.533 55.000 0.00 0.00 0.00 5.52
3287 3543 6.072175 CGGTAATCAAGGAGGAAATTGTGAAA 60.072 38.462 0.00 0.00 0.00 2.69
3425 3681 1.842562 ACAGCCATCTTCATAGCCACT 59.157 47.619 0.00 0.00 0.00 4.00
3503 3759 5.298777 AGCTGTAAATGATGGCAAAGATCTC 59.701 40.000 0.00 0.00 0.00 2.75
3563 3819 8.821894 TGCAACTGTATTGTTTTTATTTGTTCC 58.178 29.630 0.00 0.00 0.00 3.62
3593 3849 2.042686 TATCCAGGCATTGTGCTGAC 57.957 50.000 1.64 0.00 44.28 3.51
3606 3862 2.931969 TGTGCTGACGATGATCATCAAC 59.068 45.455 30.13 23.06 37.69 3.18
3642 3900 9.762381 TTTAGGTCCCACTATAATTTGATTTGT 57.238 29.630 0.00 0.00 0.00 2.83
3659 3917 1.527034 TGTGAGAAATGCTCTGCACC 58.473 50.000 0.00 0.00 43.04 5.01
3667 3925 5.181748 AGAAATGCTCTGCACCTAACTTAG 58.818 41.667 0.00 0.00 43.04 2.18
3769 4027 4.841813 TCCCCATCGAGCACCTATTTATTA 59.158 41.667 0.00 0.00 0.00 0.98
3819 4077 5.222442 ACTGTATCTCCTCATATGGCCTAGT 60.222 44.000 3.32 0.00 0.00 2.57
3889 4147 8.658499 AGTTCGTAACAGAAATTATACCCATC 57.342 34.615 0.00 0.00 0.00 3.51
3890 4148 7.713942 AGTTCGTAACAGAAATTATACCCATCC 59.286 37.037 0.00 0.00 0.00 3.51
3891 4149 6.527423 TCGTAACAGAAATTATACCCATCCC 58.473 40.000 0.00 0.00 0.00 3.85
3892 4150 5.704053 CGTAACAGAAATTATACCCATCCCC 59.296 44.000 0.00 0.00 0.00 4.81
3893 4151 4.367039 ACAGAAATTATACCCATCCCCG 57.633 45.455 0.00 0.00 0.00 5.73
3894 4152 3.073946 ACAGAAATTATACCCATCCCCGG 59.926 47.826 0.00 0.00 0.00 5.73
3902 4160 2.851102 CCATCCCCGGGCTCAGAT 60.851 66.667 17.73 9.88 0.00 2.90
3903 4161 2.429058 CATCCCCGGGCTCAGATG 59.571 66.667 17.73 18.66 0.00 2.90
3904 4162 3.564218 ATCCCCGGGCTCAGATGC 61.564 66.667 17.73 0.00 0.00 3.91
3908 4166 3.933722 CCGGGCTCAGATGCGGAT 61.934 66.667 0.00 0.00 0.00 4.18
3909 4167 2.109799 CGGGCTCAGATGCGGATT 59.890 61.111 0.00 0.00 0.00 3.01
3910 4168 1.524621 CGGGCTCAGATGCGGATTT 60.525 57.895 0.00 0.00 0.00 2.17
3911 4169 1.097547 CGGGCTCAGATGCGGATTTT 61.098 55.000 0.00 0.00 0.00 1.82
3912 4170 0.665298 GGGCTCAGATGCGGATTTTC 59.335 55.000 0.00 0.00 0.00 2.29
3913 4171 0.305922 GGCTCAGATGCGGATTTTCG 59.694 55.000 0.00 0.00 0.00 3.46
3927 4185 6.345920 CGGATTTTCGCTTGAATAGTTAGT 57.654 37.500 0.00 0.00 0.00 2.24
3928 4186 7.459394 CGGATTTTCGCTTGAATAGTTAGTA 57.541 36.000 0.00 0.00 0.00 1.82
3929 4187 7.902032 CGGATTTTCGCTTGAATAGTTAGTAA 58.098 34.615 0.00 0.00 0.00 2.24
3930 4188 7.844653 CGGATTTTCGCTTGAATAGTTAGTAAC 59.155 37.037 4.78 4.78 0.00 2.50
3931 4189 8.662141 GGATTTTCGCTTGAATAGTTAGTAACA 58.338 33.333 15.28 2.18 0.00 2.41
3932 4190 9.690434 GATTTTCGCTTGAATAGTTAGTAACAG 57.310 33.333 15.28 3.94 0.00 3.16
3933 4191 8.821147 TTTTCGCTTGAATAGTTAGTAACAGA 57.179 30.769 15.28 3.19 0.00 3.41
3934 4192 8.821147 TTTCGCTTGAATAGTTAGTAACAGAA 57.179 30.769 15.28 0.98 0.00 3.02
3935 4193 8.821147 TTCGCTTGAATAGTTAGTAACAGAAA 57.179 30.769 15.28 2.12 0.00 2.52
3936 4194 8.821147 TCGCTTGAATAGTTAGTAACAGAAAA 57.179 30.769 15.28 2.74 0.00 2.29
3937 4195 9.431887 TCGCTTGAATAGTTAGTAACAGAAAAT 57.568 29.630 15.28 0.00 0.00 1.82
4049 4307 5.705609 TTTCTGATGCCTTGTTTTCCTAC 57.294 39.130 0.00 0.00 0.00 3.18
4089 4348 4.119862 TGAGCAGGCTAATTGTCGATTAC 58.880 43.478 0.00 0.00 0.00 1.89
4091 4350 4.770795 AGCAGGCTAATTGTCGATTACTT 58.229 39.130 0.00 0.00 0.00 2.24
4117 4376 1.318576 GTGCTTTGTGTTGCTAGGGT 58.681 50.000 0.00 0.00 0.00 4.34
4135 4395 5.520748 AGGGTGAGACACATTTTTCCTAT 57.479 39.130 0.00 0.00 35.86 2.57
4145 4405 9.601217 AGACACATTTTTCCTATATATATCCGC 57.399 33.333 0.00 0.00 0.00 5.54
4146 4406 9.601217 GACACATTTTTCCTATATATATCCGCT 57.399 33.333 0.00 0.00 0.00 5.52
4168 4428 7.412455 CCGCTATTTGTTTGTTTGTTTGTTTCT 60.412 33.333 0.00 0.00 0.00 2.52
4169 4429 7.422179 CGCTATTTGTTTGTTTGTTTGTTTCTG 59.578 33.333 0.00 0.00 0.00 3.02
4171 4431 9.956797 CTATTTGTTTGTTTGTTTGTTTCTGAG 57.043 29.630 0.00 0.00 0.00 3.35
4189 4449 2.149578 GAGAACATGCTGAGCTGTGTT 58.850 47.619 22.11 22.11 39.35 3.32
4191 4451 0.956633 AACATGCTGAGCTGTGTTGG 59.043 50.000 21.57 1.75 36.98 3.77
4211 4471 7.867403 GTGTTGGATGACTTGTTTGATAACATT 59.133 33.333 0.00 0.00 43.43 2.71
4229 4489 6.668541 AACATTTGAGAATATGACGAGTGG 57.331 37.500 0.00 0.00 0.00 4.00
4230 4490 4.572389 ACATTTGAGAATATGACGAGTGGC 59.428 41.667 0.00 0.00 0.00 5.01
4424 4684 1.601419 CCGGCGAGTTGTCCCTCTTA 61.601 60.000 9.30 0.00 0.00 2.10
4439 4699 3.200887 CTTATCCGCTCTCGCCGCT 62.201 63.158 0.00 0.00 0.00 5.52
4492 4752 2.093606 ACAGATCCAGCAGAGACATGTG 60.094 50.000 1.15 0.00 0.00 3.21
4499 4759 1.792301 CAGAGACATGTGCAAGGCG 59.208 57.895 1.15 0.00 0.00 5.52
4555 4843 6.005583 TGCAGCTCAAGAAACTTAATTCTG 57.994 37.500 0.00 0.00 39.54 3.02
4564 4852 7.121168 TCAAGAAACTTAATTCTGCATACAGGG 59.879 37.037 0.00 0.00 44.59 4.45
4566 4854 7.630082 AGAAACTTAATTCTGCATACAGGGTA 58.370 34.615 0.00 0.00 44.59 3.69
4567 4855 8.107095 AGAAACTTAATTCTGCATACAGGGTAA 58.893 33.333 0.00 0.00 44.59 2.85
4573 4862 1.956477 CTGCATACAGGGTAATTGGGC 59.044 52.381 0.00 0.00 40.48 5.36
4580 4869 0.335019 AGGGTAATTGGGCCTTGTCC 59.665 55.000 4.53 0.82 0.00 4.02
4602 4891 5.642063 TCCTCCTTAAGACGCAATTAAAGTG 59.358 40.000 3.36 0.00 0.00 3.16
4608 4897 4.346734 AGACGCAATTAAAGTGCTCATG 57.653 40.909 11.45 0.00 39.95 3.07
4648 4937 5.406780 ACATCAAGCTAAGAAGAGTTTGACG 59.593 40.000 5.06 0.57 45.64 4.35
4649 4938 4.307432 TCAAGCTAAGAAGAGTTTGACGG 58.693 43.478 0.00 0.00 40.46 4.79
4670 4959 0.324614 TTTCTTCCTCGATGCTGGCA 59.675 50.000 0.00 0.00 0.00 4.92
4681 4970 0.896940 ATGCTGGCAGGTGTTTCTGG 60.897 55.000 17.64 0.00 35.43 3.86
4774 5070 4.041723 CCTTTTTAGCCTGTTTGTGTTCG 58.958 43.478 0.00 0.00 0.00 3.95
4781 5079 1.070175 CCTGTTTGTGTTCGTAAGGCG 60.070 52.381 0.00 0.00 43.01 5.52
4790 5088 2.134346 GTTCGTAAGGCGTTGTGGTTA 58.866 47.619 0.97 0.00 42.13 2.85
4817 5115 2.175811 GTTACCTTGGCGCGCAAG 59.824 61.111 34.42 29.33 43.44 4.01
4909 5208 5.690865 AGTGGTATCTGTTTCACCTTTTGA 58.309 37.500 0.00 0.00 33.28 2.69
4927 5226 5.948742 TTTGATTGGTCCTTTTTCCTGTT 57.051 34.783 0.00 0.00 0.00 3.16
5171 5470 2.032550 GCATGAACCGATGGACATCTTG 59.967 50.000 10.28 4.41 35.72 3.02
5172 5471 2.401583 TGAACCGATGGACATCTTGG 57.598 50.000 10.28 7.52 35.72 3.61
5191 5492 6.344500 TCTTGGAAGTAGCAATCTTGATCTC 58.656 40.000 0.00 0.00 0.00 2.75
5194 5495 5.188555 TGGAAGTAGCAATCTTGATCTCAGT 59.811 40.000 0.00 0.00 0.00 3.41
5196 5497 6.699642 GGAAGTAGCAATCTTGATCTCAGTAC 59.300 42.308 0.00 0.00 0.00 2.73
5198 5499 6.804677 AGTAGCAATCTTGATCTCAGTACTG 58.195 40.000 17.17 17.17 0.00 2.74
5214 5515 3.894427 AGTACTGATCTGGATCTGCGATT 59.106 43.478 14.46 2.13 39.47 3.34
5233 5534 2.787473 TTGTATTGGCACCTCTGAGG 57.213 50.000 22.00 22.00 42.49 3.86
5374 5684 1.614317 GCCTAAGTGCATCAACACCCT 60.614 52.381 0.00 0.00 41.67 4.34
5390 5700 2.854076 CTGGCTCCCCAAACCCTT 59.146 61.111 0.00 0.00 41.58 3.95
5397 5707 3.498661 GGCTCCCCAAACCCTTCATATAG 60.499 52.174 0.00 0.00 0.00 1.31
5398 5708 3.756117 CTCCCCAAACCCTTCATATAGC 58.244 50.000 0.00 0.00 0.00 2.97
5401 5711 3.490348 CCCAAACCCTTCATATAGCCTG 58.510 50.000 0.00 0.00 0.00 4.85
5457 5777 2.124236 ACCTAGACGGGCTCCTCG 60.124 66.667 0.00 0.00 36.97 4.63
5461 5781 0.662085 CTAGACGGGCTCCTCGTTAC 59.338 60.000 0.00 0.00 41.22 2.50
5464 5784 3.446570 CGGGCTCCTCGTTACGGT 61.447 66.667 4.53 0.00 0.00 4.83
5465 5785 2.493501 GGGCTCCTCGTTACGGTC 59.506 66.667 4.53 0.00 0.00 4.79
5467 5787 2.493501 GCTCCTCGTTACGGTCCC 59.506 66.667 4.53 0.00 0.00 4.46
5471 5791 1.336125 CTCCTCGTTACGGTCCCATAC 59.664 57.143 4.53 0.00 0.00 2.39
5473 5793 0.029834 CTCGTTACGGTCCCATACGG 59.970 60.000 4.53 0.00 33.37 4.02
5498 5819 1.620819 ACTGACCGGCATCCTCATATC 59.379 52.381 0.00 0.00 0.00 1.63
5502 5823 0.979665 CCGGCATCCTCATATCCAGT 59.020 55.000 0.00 0.00 0.00 4.00
5509 5830 6.479884 GGCATCCTCATATCCAGTCTAAATT 58.520 40.000 0.00 0.00 0.00 1.82
5514 5835 7.739825 TCCTCATATCCAGTCTAAATTTGAGG 58.260 38.462 17.96 17.96 43.91 3.86
5515 5836 7.348274 TCCTCATATCCAGTCTAAATTTGAGGT 59.652 37.037 20.59 0.00 43.45 3.85
5516 5837 7.443575 CCTCATATCCAGTCTAAATTTGAGGTG 59.556 40.741 16.82 0.00 40.67 4.00
5517 5838 6.767902 TCATATCCAGTCTAAATTTGAGGTGC 59.232 38.462 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.753744 GCTCTAGGCAAAAGACAAATTTATGG 59.246 38.462 0.00 0.00 41.35 2.74
26 29 7.093988 GCTCATTTGGATATCTGAGTAGCTCTA 60.094 40.741 16.70 0.00 37.90 2.43
155 162 2.365617 AGTTGATTCAGACCGACTGTGT 59.634 45.455 8.83 1.20 45.86 3.72
160 192 8.649973 ATTCTTTATAGTTGATTCAGACCGAC 57.350 34.615 0.00 0.00 0.00 4.79
295 327 6.264088 AGCCGACGTACTAGAAGATTTTTAG 58.736 40.000 0.00 0.00 0.00 1.85
296 328 6.199937 AGCCGACGTACTAGAAGATTTTTA 57.800 37.500 0.00 0.00 0.00 1.52
297 329 5.069501 AGCCGACGTACTAGAAGATTTTT 57.930 39.130 0.00 0.00 0.00 1.94
298 330 4.715527 AGCCGACGTACTAGAAGATTTT 57.284 40.909 0.00 0.00 0.00 1.82
299 331 4.715527 AAGCCGACGTACTAGAAGATTT 57.284 40.909 0.00 0.00 0.00 2.17
300 332 5.530171 TCATAAGCCGACGTACTAGAAGATT 59.470 40.000 0.00 0.00 0.00 2.40
301 333 5.061853 TCATAAGCCGACGTACTAGAAGAT 58.938 41.667 0.00 0.00 0.00 2.40
302 334 4.445453 TCATAAGCCGACGTACTAGAAGA 58.555 43.478 0.00 0.00 0.00 2.87
303 335 4.808077 TCATAAGCCGACGTACTAGAAG 57.192 45.455 0.00 0.00 0.00 2.85
304 336 5.762825 AATCATAAGCCGACGTACTAGAA 57.237 39.130 0.00 0.00 0.00 2.10
305 337 5.762825 AAATCATAAGCCGACGTACTAGA 57.237 39.130 0.00 0.00 0.00 2.43
306 338 7.482113 CAGATAAATCATAAGCCGACGTACTAG 59.518 40.741 0.00 0.00 0.00 2.57
307 339 7.040892 ACAGATAAATCATAAGCCGACGTACTA 60.041 37.037 0.00 0.00 0.00 1.82
308 340 6.150318 CAGATAAATCATAAGCCGACGTACT 58.850 40.000 0.00 0.00 0.00 2.73
309 341 5.919141 ACAGATAAATCATAAGCCGACGTAC 59.081 40.000 0.00 0.00 0.00 3.67
310 342 6.016527 AGACAGATAAATCATAAGCCGACGTA 60.017 38.462 0.00 0.00 0.00 3.57
311 343 4.945246 ACAGATAAATCATAAGCCGACGT 58.055 39.130 0.00 0.00 0.00 4.34
312 344 5.223382 AGACAGATAAATCATAAGCCGACG 58.777 41.667 0.00 0.00 0.00 5.12
313 345 9.856488 TTATAGACAGATAAATCATAAGCCGAC 57.144 33.333 0.00 0.00 0.00 4.79
329 361 9.974980 TTACACAATCGCATTATTATAGACAGA 57.025 29.630 0.00 0.00 0.00 3.41
340 372 9.103861 TGATCAGTTATTTACACAATCGCATTA 57.896 29.630 0.00 0.00 0.00 1.90
341 373 7.984391 TGATCAGTTATTTACACAATCGCATT 58.016 30.769 0.00 0.00 0.00 3.56
342 374 7.552458 TGATCAGTTATTTACACAATCGCAT 57.448 32.000 0.00 0.00 0.00 4.73
343 375 6.976636 TGATCAGTTATTTACACAATCGCA 57.023 33.333 0.00 0.00 0.00 5.10
344 376 9.929722 TTAATGATCAGTTATTTACACAATCGC 57.070 29.630 0.00 0.00 0.00 4.58
357 389 9.919416 TCATGGGAAGAATTTAATGATCAGTTA 57.081 29.630 0.00 0.00 0.00 2.24
358 390 8.827832 TCATGGGAAGAATTTAATGATCAGTT 57.172 30.769 0.00 0.00 0.00 3.16
359 391 8.827832 TTCATGGGAAGAATTTAATGATCAGT 57.172 30.769 0.09 0.00 0.00 3.41
364 396 9.713684 AGGTAATTCATGGGAAGAATTTAATGA 57.286 29.630 6.48 0.00 41.54 2.57
373 405 9.502091 CGAAATATAAGGTAATTCATGGGAAGA 57.498 33.333 0.00 0.00 36.25 2.87
374 406 9.502091 TCGAAATATAAGGTAATTCATGGGAAG 57.498 33.333 0.00 0.00 36.25 3.46
376 408 9.667107 GATCGAAATATAAGGTAATTCATGGGA 57.333 33.333 0.00 0.00 0.00 4.37
377 409 8.893727 GGATCGAAATATAAGGTAATTCATGGG 58.106 37.037 0.00 0.00 0.00 4.00
378 410 8.604035 CGGATCGAAATATAAGGTAATTCATGG 58.396 37.037 0.00 0.00 0.00 3.66
379 411 9.366216 TCGGATCGAAATATAAGGTAATTCATG 57.634 33.333 0.00 0.00 31.06 3.07
380 412 9.938280 TTCGGATCGAAATATAAGGTAATTCAT 57.062 29.630 0.00 0.00 43.00 2.57
381 413 9.419297 CTTCGGATCGAAATATAAGGTAATTCA 57.581 33.333 4.34 0.00 45.23 2.57
382 414 9.420551 ACTTCGGATCGAAATATAAGGTAATTC 57.579 33.333 4.34 0.00 45.23 2.17
383 415 9.774413 AACTTCGGATCGAAATATAAGGTAATT 57.226 29.630 4.34 0.00 45.23 1.40
384 416 9.774413 AAACTTCGGATCGAAATATAAGGTAAT 57.226 29.630 4.34 0.00 45.23 1.89
385 417 9.603921 AAAACTTCGGATCGAAATATAAGGTAA 57.396 29.630 4.34 0.00 45.23 2.85
386 418 9.037737 CAAAACTTCGGATCGAAATATAAGGTA 57.962 33.333 4.34 0.00 45.23 3.08
387 419 7.551617 ACAAAACTTCGGATCGAAATATAAGGT 59.448 33.333 4.34 0.00 45.23 3.50
388 420 7.916552 ACAAAACTTCGGATCGAAATATAAGG 58.083 34.615 4.34 0.00 45.23 2.69
391 423 9.590451 ACTTACAAAACTTCGGATCGAAATATA 57.410 29.630 4.34 0.00 45.23 0.86
392 424 8.488651 ACTTACAAAACTTCGGATCGAAATAT 57.511 30.769 4.34 0.00 45.23 1.28
393 425 7.894376 ACTTACAAAACTTCGGATCGAAATA 57.106 32.000 4.34 0.00 45.23 1.40
394 426 6.796705 ACTTACAAAACTTCGGATCGAAAT 57.203 33.333 4.34 0.00 45.23 2.17
395 427 7.712264 TTACTTACAAAACTTCGGATCGAAA 57.288 32.000 4.34 0.00 45.23 3.46
396 428 7.712264 TTTACTTACAAAACTTCGGATCGAA 57.288 32.000 2.77 2.77 43.75 3.71
397 429 7.894376 ATTTACTTACAAAACTTCGGATCGA 57.106 32.000 0.00 0.00 0.00 3.59
418 450 9.524106 CCTTTCGAACCAGTTTTACTTTAATTT 57.476 29.630 0.00 0.00 0.00 1.82
419 451 8.689061 ACCTTTCGAACCAGTTTTACTTTAATT 58.311 29.630 0.00 0.00 0.00 1.40
420 452 8.229253 ACCTTTCGAACCAGTTTTACTTTAAT 57.771 30.769 0.00 0.00 0.00 1.40
421 453 7.628769 ACCTTTCGAACCAGTTTTACTTTAA 57.371 32.000 0.00 0.00 0.00 1.52
422 454 8.729805 TTACCTTTCGAACCAGTTTTACTTTA 57.270 30.769 0.00 0.00 0.00 1.85
423 455 7.337689 ACTTACCTTTCGAACCAGTTTTACTTT 59.662 33.333 0.00 0.00 0.00 2.66
424 456 6.825213 ACTTACCTTTCGAACCAGTTTTACTT 59.175 34.615 0.00 0.00 0.00 2.24
425 457 6.351711 ACTTACCTTTCGAACCAGTTTTACT 58.648 36.000 0.00 0.00 0.00 2.24
426 458 6.609237 ACTTACCTTTCGAACCAGTTTTAC 57.391 37.500 0.00 0.00 0.00 2.01
427 459 8.729805 TTTACTTACCTTTCGAACCAGTTTTA 57.270 30.769 0.00 0.00 0.00 1.52
428 460 7.628769 TTTACTTACCTTTCGAACCAGTTTT 57.371 32.000 0.00 0.00 0.00 2.43
429 461 7.812690 ATTTACTTACCTTTCGAACCAGTTT 57.187 32.000 0.00 0.00 0.00 2.66
430 462 7.812690 AATTTACTTACCTTTCGAACCAGTT 57.187 32.000 0.00 0.00 0.00 3.16
431 463 8.907222 TTAATTTACTTACCTTTCGAACCAGT 57.093 30.769 0.00 0.00 0.00 4.00
463 495 9.104965 CGTCCAACTTTCCTTGTATGATAATAA 57.895 33.333 0.00 0.00 0.00 1.40
464 496 8.479689 TCGTCCAACTTTCCTTGTATGATAATA 58.520 33.333 0.00 0.00 0.00 0.98
465 497 7.335627 TCGTCCAACTTTCCTTGTATGATAAT 58.664 34.615 0.00 0.00 0.00 1.28
466 498 6.703319 TCGTCCAACTTTCCTTGTATGATAA 58.297 36.000 0.00 0.00 0.00 1.75
467 499 6.288941 TCGTCCAACTTTCCTTGTATGATA 57.711 37.500 0.00 0.00 0.00 2.15
468 500 5.160607 TCGTCCAACTTTCCTTGTATGAT 57.839 39.130 0.00 0.00 0.00 2.45
469 501 4.562757 CCTCGTCCAACTTTCCTTGTATGA 60.563 45.833 0.00 0.00 0.00 2.15
470 502 3.684788 CCTCGTCCAACTTTCCTTGTATG 59.315 47.826 0.00 0.00 0.00 2.39
471 503 3.307480 CCCTCGTCCAACTTTCCTTGTAT 60.307 47.826 0.00 0.00 0.00 2.29
472 504 2.038033 CCCTCGTCCAACTTTCCTTGTA 59.962 50.000 0.00 0.00 0.00 2.41
473 505 1.202770 CCCTCGTCCAACTTTCCTTGT 60.203 52.381 0.00 0.00 0.00 3.16
474 506 1.523758 CCCTCGTCCAACTTTCCTTG 58.476 55.000 0.00 0.00 0.00 3.61
475 507 0.400594 CCCCTCGTCCAACTTTCCTT 59.599 55.000 0.00 0.00 0.00 3.36
476 508 0.767060 ACCCCTCGTCCAACTTTCCT 60.767 55.000 0.00 0.00 0.00 3.36
477 509 0.605589 CACCCCTCGTCCAACTTTCC 60.606 60.000 0.00 0.00 0.00 3.13
478 510 0.605589 CCACCCCTCGTCCAACTTTC 60.606 60.000 0.00 0.00 0.00 2.62
479 511 1.350310 ACCACCCCTCGTCCAACTTT 61.350 55.000 0.00 0.00 0.00 2.66
480 512 1.768888 ACCACCCCTCGTCCAACTT 60.769 57.895 0.00 0.00 0.00 2.66
481 513 2.122547 ACCACCCCTCGTCCAACT 60.123 61.111 0.00 0.00 0.00 3.16
482 514 2.032071 CACCACCCCTCGTCCAAC 59.968 66.667 0.00 0.00 0.00 3.77
483 515 2.446994 ACACCACCCCTCGTCCAA 60.447 61.111 0.00 0.00 0.00 3.53
484 516 3.238497 CACACCACCCCTCGTCCA 61.238 66.667 0.00 0.00 0.00 4.02
485 517 2.450479 CTTCACACCACCCCTCGTCC 62.450 65.000 0.00 0.00 0.00 4.79
486 518 1.004918 CTTCACACCACCCCTCGTC 60.005 63.158 0.00 0.00 0.00 4.20
487 519 1.052124 TTCTTCACACCACCCCTCGT 61.052 55.000 0.00 0.00 0.00 4.18
488 520 0.107831 TTTCTTCACACCACCCCTCG 59.892 55.000 0.00 0.00 0.00 4.63
489 521 1.420138 TCTTTCTTCACACCACCCCTC 59.580 52.381 0.00 0.00 0.00 4.30
490 522 1.518367 TCTTTCTTCACACCACCCCT 58.482 50.000 0.00 0.00 0.00 4.79
491 523 2.586648 ATCTTTCTTCACACCACCCC 57.413 50.000 0.00 0.00 0.00 4.95
492 524 4.015872 TGTATCTTTCTTCACACCACCC 57.984 45.455 0.00 0.00 0.00 4.61
493 525 4.455877 CCTTGTATCTTTCTTCACACCACC 59.544 45.833 0.00 0.00 0.00 4.61
494 526 5.305585 TCCTTGTATCTTTCTTCACACCAC 58.694 41.667 0.00 0.00 0.00 4.16
495 527 5.560722 TCCTTGTATCTTTCTTCACACCA 57.439 39.130 0.00 0.00 0.00 4.17
496 528 6.486993 ACTTTCCTTGTATCTTTCTTCACACC 59.513 38.462 0.00 0.00 0.00 4.16
497 529 7.497925 ACTTTCCTTGTATCTTTCTTCACAC 57.502 36.000 0.00 0.00 0.00 3.82
498 530 7.013274 CCAACTTTCCTTGTATCTTTCTTCACA 59.987 37.037 0.00 0.00 0.00 3.58
499 531 7.228706 TCCAACTTTCCTTGTATCTTTCTTCAC 59.771 37.037 0.00 0.00 0.00 3.18
500 532 7.228706 GTCCAACTTTCCTTGTATCTTTCTTCA 59.771 37.037 0.00 0.00 0.00 3.02
501 533 7.571428 CGTCCAACTTTCCTTGTATCTTTCTTC 60.571 40.741 0.00 0.00 0.00 2.87
502 534 6.204882 CGTCCAACTTTCCTTGTATCTTTCTT 59.795 38.462 0.00 0.00 0.00 2.52
503 535 5.701290 CGTCCAACTTTCCTTGTATCTTTCT 59.299 40.000 0.00 0.00 0.00 2.52
504 536 5.699458 TCGTCCAACTTTCCTTGTATCTTTC 59.301 40.000 0.00 0.00 0.00 2.62
505 537 5.617252 TCGTCCAACTTTCCTTGTATCTTT 58.383 37.500 0.00 0.00 0.00 2.52
506 538 5.223449 TCGTCCAACTTTCCTTGTATCTT 57.777 39.130 0.00 0.00 0.00 2.40
507 539 4.322801 CCTCGTCCAACTTTCCTTGTATCT 60.323 45.833 0.00 0.00 0.00 1.98
508 540 3.933332 CCTCGTCCAACTTTCCTTGTATC 59.067 47.826 0.00 0.00 0.00 2.24
509 541 3.307480 CCCTCGTCCAACTTTCCTTGTAT 60.307 47.826 0.00 0.00 0.00 2.29
510 542 2.038033 CCCTCGTCCAACTTTCCTTGTA 59.962 50.000 0.00 0.00 0.00 2.41
511 543 1.202770 CCCTCGTCCAACTTTCCTTGT 60.203 52.381 0.00 0.00 0.00 3.16
512 544 1.523758 CCCTCGTCCAACTTTCCTTG 58.476 55.000 0.00 0.00 0.00 3.61
513 545 0.400594 CCCCTCGTCCAACTTTCCTT 59.599 55.000 0.00 0.00 0.00 3.36
514 546 0.767060 ACCCCTCGTCCAACTTTCCT 60.767 55.000 0.00 0.00 0.00 3.36
515 547 0.605589 CACCCCTCGTCCAACTTTCC 60.606 60.000 0.00 0.00 0.00 3.13
516 548 0.395312 TCACCCCTCGTCCAACTTTC 59.605 55.000 0.00 0.00 0.00 2.62
517 549 1.064825 ATCACCCCTCGTCCAACTTT 58.935 50.000 0.00 0.00 0.00 2.66
518 550 0.324943 CATCACCCCTCGTCCAACTT 59.675 55.000 0.00 0.00 0.00 2.66
519 551 0.836400 ACATCACCCCTCGTCCAACT 60.836 55.000 0.00 0.00 0.00 3.16
520 552 0.673644 CACATCACCCCTCGTCCAAC 60.674 60.000 0.00 0.00 0.00 3.77
521 553 0.834261 TCACATCACCCCTCGTCCAA 60.834 55.000 0.00 0.00 0.00 3.53
522 554 0.834261 TTCACATCACCCCTCGTCCA 60.834 55.000 0.00 0.00 0.00 4.02
523 555 0.108138 CTTCACATCACCCCTCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
524 556 0.895530 TCTTCACATCACCCCTCGTC 59.104 55.000 0.00 0.00 0.00 4.20
525 557 1.348064 TTCTTCACATCACCCCTCGT 58.652 50.000 0.00 0.00 0.00 4.18
526 558 2.028112 TCTTTCTTCACATCACCCCTCG 60.028 50.000 0.00 0.00 0.00 4.63
527 559 3.703001 TCTTTCTTCACATCACCCCTC 57.297 47.619 0.00 0.00 0.00 4.30
528 560 3.588842 TCATCTTTCTTCACATCACCCCT 59.411 43.478 0.00 0.00 0.00 4.79
529 561 3.955471 TCATCTTTCTTCACATCACCCC 58.045 45.455 0.00 0.00 0.00 4.95
530 562 5.964958 TTTCATCTTTCTTCACATCACCC 57.035 39.130 0.00 0.00 0.00 4.61
531 563 9.912634 TTTTATTTCATCTTTCTTCACATCACC 57.087 29.630 0.00 0.00 0.00 4.02
583 615 9.775539 TGCATTTTCTATATCCCTATCTCTACT 57.224 33.333 0.00 0.00 0.00 2.57
586 618 8.420222 CGATGCATTTTCTATATCCCTATCTCT 58.580 37.037 0.00 0.00 0.00 3.10
587 619 8.200792 ACGATGCATTTTCTATATCCCTATCTC 58.799 37.037 0.00 0.00 0.00 2.75
588 620 8.083828 ACGATGCATTTTCTATATCCCTATCT 57.916 34.615 0.00 0.00 0.00 1.98
589 621 8.723942 AACGATGCATTTTCTATATCCCTATC 57.276 34.615 0.00 0.00 0.00 2.08
590 622 7.770897 GGAACGATGCATTTTCTATATCCCTAT 59.229 37.037 17.07 0.00 0.00 2.57
591 623 7.103641 GGAACGATGCATTTTCTATATCCCTA 58.896 38.462 17.07 0.00 0.00 3.53
592 624 5.940470 GGAACGATGCATTTTCTATATCCCT 59.060 40.000 17.07 0.00 0.00 4.20
593 625 5.705441 TGGAACGATGCATTTTCTATATCCC 59.295 40.000 17.07 5.00 0.00 3.85
594 626 6.650807 TCTGGAACGATGCATTTTCTATATCC 59.349 38.462 17.07 10.34 0.00 2.59
595 627 7.658179 TCTGGAACGATGCATTTTCTATATC 57.342 36.000 17.07 5.57 0.00 1.63
596 628 8.627208 AATCTGGAACGATGCATTTTCTATAT 57.373 30.769 17.07 9.68 0.00 0.86
597 629 8.450578 AAATCTGGAACGATGCATTTTCTATA 57.549 30.769 17.07 8.23 0.00 1.31
598 630 6.949352 AATCTGGAACGATGCATTTTCTAT 57.051 33.333 17.07 9.12 0.00 1.98
612 644 9.148104 AGTAATAACACGAGTAAAATCTGGAAC 57.852 33.333 0.00 0.00 0.00 3.62
733 765 2.586792 CCTTGCTCTCCCCTTCGG 59.413 66.667 0.00 0.00 0.00 4.30
736 768 2.532715 TGGCCTTGCTCTCCCCTT 60.533 61.111 3.32 0.00 0.00 3.95
1287 1321 1.226717 GGACGAGACGATGGACTGC 60.227 63.158 0.00 0.00 0.00 4.40
1398 1459 0.543749 CCTCCTCGGGCATTTTCTCT 59.456 55.000 0.00 0.00 0.00 3.10
1540 1601 4.292178 GAGCCCCTCGATCTGCCG 62.292 72.222 0.00 0.00 0.00 5.69
1563 1624 2.578981 GCGTAGTCGAAGCCGTCC 60.579 66.667 0.00 0.00 39.71 4.79
2006 2083 4.946784 ATTGATTTAGGCACGTGACTTC 57.053 40.909 32.25 21.74 33.72 3.01
2125 2223 2.154389 CAGTTAGTTACCGCGTTGTGAC 59.846 50.000 4.92 3.66 0.00 3.67
2126 2225 2.223782 ACAGTTAGTTACCGCGTTGTGA 60.224 45.455 4.92 0.00 0.00 3.58
2165 2266 0.459237 AAATCTGCTCGACCTGCTCG 60.459 55.000 0.00 0.00 44.44 5.03
2357 2458 1.832167 GTGGTGGCAAAGGGAAGCA 60.832 57.895 0.00 0.00 0.00 3.91
2362 2463 0.250553 TAGTTCGTGGTGGCAAAGGG 60.251 55.000 0.00 0.00 0.00 3.95
2363 2464 0.872388 GTAGTTCGTGGTGGCAAAGG 59.128 55.000 0.00 0.00 0.00 3.11
2376 2478 6.637658 GTGACTCAAGTGAAGTACAGTAGTTC 59.362 42.308 18.11 18.11 38.35 3.01
2377 2479 6.461231 GGTGACTCAAGTGAAGTACAGTAGTT 60.461 42.308 0.00 0.00 0.00 2.24
2378 2480 5.009811 GGTGACTCAAGTGAAGTACAGTAGT 59.990 44.000 0.00 0.00 0.00 2.73
2380 2482 5.138276 AGGTGACTCAAGTGAAGTACAGTA 58.862 41.667 0.00 0.00 32.90 2.74
2381 2483 3.961408 AGGTGACTCAAGTGAAGTACAGT 59.039 43.478 0.00 0.00 32.90 3.55
2382 2484 4.592485 AGGTGACTCAAGTGAAGTACAG 57.408 45.455 0.00 0.00 32.90 2.74
2383 2485 6.493802 AGATTAGGTGACTCAAGTGAAGTACA 59.506 38.462 0.00 0.00 43.67 2.90
2413 2521 9.010029 GGTTGTGACTAGGAATTTTATTCTGAA 57.990 33.333 0.00 0.00 0.00 3.02
2433 2541 5.534654 TCTGTCTTGGGAAATAAAGGTTGTG 59.465 40.000 0.00 0.00 0.00 3.33
2437 2545 5.584551 AGTCTGTCTTGGGAAATAAAGGT 57.415 39.130 0.00 0.00 0.00 3.50
2447 2555 3.452627 AGTAAGCCATAGTCTGTCTTGGG 59.547 47.826 0.00 0.00 0.00 4.12
2448 2556 4.160439 TCAGTAAGCCATAGTCTGTCTTGG 59.840 45.833 0.00 0.00 0.00 3.61
2482 2607 5.645497 GGCCACTCTGCTTATTATATGAAGG 59.355 44.000 0.00 0.00 0.00 3.46
2504 2629 7.094634 CCCTAACTATGTGTATCATCAAATGGC 60.095 40.741 0.00 0.00 37.91 4.40
2513 2638 2.631062 CGGGCCCTAACTATGTGTATCA 59.369 50.000 22.43 0.00 0.00 2.15
2515 2640 2.686119 ACGGGCCCTAACTATGTGTAT 58.314 47.619 22.43 0.00 0.00 2.29
2530 2655 0.603065 AATCCTTGCTGAAAACGGGC 59.397 50.000 0.00 0.00 0.00 6.13
2544 2669 4.881850 CGCCAACTTATCCTTGTTAATCCT 59.118 41.667 0.00 0.00 0.00 3.24
2573 2698 7.283127 GTCCATAAGCTCAACCTGATAATTCAA 59.717 37.037 0.00 0.00 0.00 2.69
2583 2708 3.788227 TGTTGTCCATAAGCTCAACCT 57.212 42.857 10.25 0.00 39.22 3.50
2651 2776 5.528870 CCAAGTTGGTTCAGTGGTAATTTC 58.471 41.667 14.21 0.00 31.35 2.17
2665 2823 2.303600 TCTTACGGTATGCCAAGTTGGT 59.696 45.455 22.85 7.01 40.46 3.67
2688 2846 8.744568 TGGCAAGTATCATATGTAATTGAACA 57.255 30.769 19.98 16.17 30.93 3.18
2729 2887 5.393866 TCTTACCAGAAGCCCTTTCAAAAT 58.606 37.500 0.00 0.00 38.31 1.82
2813 2987 5.308497 TGGTTCCAGATACTCAAAGTTGGTA 59.692 40.000 0.00 0.00 28.38 3.25
2814 2988 4.104102 TGGTTCCAGATACTCAAAGTTGGT 59.896 41.667 0.00 0.00 28.38 3.67
2819 2993 4.559862 AGGTGGTTCCAGATACTCAAAG 57.440 45.455 0.00 0.00 39.02 2.77
2828 3002 8.002459 AGTTAAAAGAATAAAGGTGGTTCCAGA 58.998 33.333 0.00 0.00 39.02 3.86
2850 3024 6.530120 TGAACCTTCTACATGCTTGAAGTTA 58.470 36.000 6.60 0.00 36.43 2.24
2852 3026 4.973168 TGAACCTTCTACATGCTTGAAGT 58.027 39.130 6.60 4.81 36.43 3.01
2853 3027 4.394300 CCTGAACCTTCTACATGCTTGAAG 59.606 45.833 6.60 12.98 37.51 3.02
2854 3028 4.041567 TCCTGAACCTTCTACATGCTTGAA 59.958 41.667 6.60 0.00 0.00 2.69
2858 3032 2.906389 TGTCCTGAACCTTCTACATGCT 59.094 45.455 0.00 0.00 0.00 3.79
2915 3089 3.066621 TGATGTGCCGGCTTCAAATATTC 59.933 43.478 29.70 18.74 0.00 1.75
2950 3124 7.648510 TGGATCGGTGTTAATTTGTGTAAAAAC 59.351 33.333 0.00 0.00 0.00 2.43
2973 3150 5.587443 CACTATCAAAATGACAGCAGATGGA 59.413 40.000 0.00 0.00 0.00 3.41
2976 3153 5.748402 TCCACTATCAAAATGACAGCAGAT 58.252 37.500 0.00 0.00 0.00 2.90
3015 3200 3.561313 GGCTGTTCTTTCCCCATACAAGA 60.561 47.826 0.00 0.00 0.00 3.02
3016 3201 2.755103 GGCTGTTCTTTCCCCATACAAG 59.245 50.000 0.00 0.00 0.00 3.16
3017 3202 2.378547 AGGCTGTTCTTTCCCCATACAA 59.621 45.455 0.00 0.00 0.00 2.41
3024 3209 3.198853 AGATGACTAGGCTGTTCTTTCCC 59.801 47.826 0.00 0.00 0.00 3.97
3027 3212 5.869579 TGAAAGATGACTAGGCTGTTCTTT 58.130 37.500 16.64 16.64 36.44 2.52
3028 3213 5.489792 TGAAAGATGACTAGGCTGTTCTT 57.510 39.130 0.00 0.02 0.00 2.52
3030 3215 7.212976 TGATATGAAAGATGACTAGGCTGTTC 58.787 38.462 0.00 0.00 0.00 3.18
3175 3431 8.410141 CAGAACAAAAGTTACCTGGTTTCAATA 58.590 33.333 3.84 0.00 0.00 1.90
3260 3516 2.413310 TTTCCTCCTTGATTACCGCC 57.587 50.000 0.00 0.00 0.00 6.13
3263 3519 6.834168 TTCACAATTTCCTCCTTGATTACC 57.166 37.500 0.00 0.00 0.00 2.85
3287 3543 4.081198 TGCACATTGGTTTTCAGAACCTTT 60.081 37.500 9.15 0.00 40.88 3.11
3434 3690 0.033228 TTTCCACATTTTGCGCAGGG 59.967 50.000 11.31 7.06 0.00 4.45
3440 3696 4.741676 CACTGAGAACTTTCCACATTTTGC 59.258 41.667 0.00 0.00 0.00 3.68
3503 3759 3.326006 AGGGCATAGTGACAGATATGTGG 59.674 47.826 0.00 0.00 32.94 4.17
3563 3819 6.091305 CACAATGCCTGGATATACTGATAACG 59.909 42.308 0.00 0.00 0.00 3.18
3619 3876 7.410174 TCACAAATCAAATTATAGTGGGACCT 58.590 34.615 0.00 0.00 0.00 3.85
3642 3900 3.008375 AGTTAGGTGCAGAGCATTTCTCA 59.992 43.478 0.00 0.00 44.35 3.27
3769 4027 6.365520 AGAGTTGATACACCACCTTTTCTTT 58.634 36.000 0.00 0.00 0.00 2.52
3819 4077 9.809395 ACACTGTTCTATAATATAGCCAGAGTA 57.191 33.333 22.23 0.00 0.00 2.59
3885 4143 2.851102 ATCTGAGCCCGGGGATGG 60.851 66.667 25.28 5.86 0.00 3.51
3886 4144 2.429058 CATCTGAGCCCGGGGATG 59.571 66.667 25.28 21.61 0.00 3.51
3887 4145 3.564218 GCATCTGAGCCCGGGGAT 61.564 66.667 25.28 11.81 0.00 3.85
3891 4149 2.947938 AAATCCGCATCTGAGCCCGG 62.948 60.000 0.00 0.00 41.97 5.73
3892 4150 1.097547 AAAATCCGCATCTGAGCCCG 61.098 55.000 0.00 0.00 0.00 6.13
3893 4151 0.665298 GAAAATCCGCATCTGAGCCC 59.335 55.000 0.00 0.00 0.00 5.19
3894 4152 0.305922 CGAAAATCCGCATCTGAGCC 59.694 55.000 0.00 0.00 0.00 4.70
3895 4153 3.814049 CGAAAATCCGCATCTGAGC 57.186 52.632 0.00 0.00 0.00 4.26
3904 4162 6.345920 ACTAACTATTCAAGCGAAAATCCG 57.654 37.500 0.00 0.00 34.01 4.18
3905 4163 8.662141 TGTTACTAACTATTCAAGCGAAAATCC 58.338 33.333 0.71 0.00 34.01 3.01
3906 4164 9.690434 CTGTTACTAACTATTCAAGCGAAAATC 57.310 33.333 0.71 0.00 34.01 2.17
3907 4165 9.431887 TCTGTTACTAACTATTCAAGCGAAAAT 57.568 29.630 0.71 0.00 34.01 1.82
3908 4166 8.821147 TCTGTTACTAACTATTCAAGCGAAAA 57.179 30.769 0.71 0.00 34.01 2.29
3909 4167 8.821147 TTCTGTTACTAACTATTCAAGCGAAA 57.179 30.769 0.71 0.00 34.01 3.46
3910 4168 8.821147 TTTCTGTTACTAACTATTCAAGCGAA 57.179 30.769 0.71 0.00 35.05 4.70
3911 4169 8.821147 TTTTCTGTTACTAACTATTCAAGCGA 57.179 30.769 0.71 0.00 0.00 4.93
4049 4307 4.991056 TGCTCAAGACAACAAGTAGCTAAG 59.009 41.667 0.00 0.00 0.00 2.18
4089 4348 4.037690 GCAACACAAAGCACAAGACTAAG 58.962 43.478 0.00 0.00 0.00 2.18
4091 4350 3.278574 AGCAACACAAAGCACAAGACTA 58.721 40.909 0.00 0.00 0.00 2.59
4140 4400 6.045955 ACAAACAAACAAACAAATAGCGGAT 58.954 32.000 0.00 0.00 0.00 4.18
4141 4401 5.411781 ACAAACAAACAAACAAATAGCGGA 58.588 33.333 0.00 0.00 0.00 5.54
4142 4402 5.710613 ACAAACAAACAAACAAATAGCGG 57.289 34.783 0.00 0.00 0.00 5.52
4143 4403 7.422179 CAGAAACAAACAAACAAACAAATAGCG 59.578 33.333 0.00 0.00 0.00 4.26
4144 4404 8.439286 TCAGAAACAAACAAACAAACAAATAGC 58.561 29.630 0.00 0.00 0.00 2.97
4145 4405 9.956797 CTCAGAAACAAACAAACAAACAAATAG 57.043 29.630 0.00 0.00 0.00 1.73
4146 4406 9.698309 TCTCAGAAACAAACAAACAAACAAATA 57.302 25.926 0.00 0.00 0.00 1.40
4147 4407 8.600449 TCTCAGAAACAAACAAACAAACAAAT 57.400 26.923 0.00 0.00 0.00 2.32
4148 4408 8.331742 GTTCTCAGAAACAAACAAACAAACAAA 58.668 29.630 0.00 0.00 0.00 2.83
4149 4409 7.492669 TGTTCTCAGAAACAAACAAACAAACAA 59.507 29.630 0.00 0.00 36.25 2.83
4150 4410 6.980978 TGTTCTCAGAAACAAACAAACAAACA 59.019 30.769 0.00 0.00 36.25 2.83
4151 4411 7.401484 TGTTCTCAGAAACAAACAAACAAAC 57.599 32.000 0.00 0.00 36.25 2.93
4152 4412 7.359933 GCATGTTCTCAGAAACAAACAAACAAA 60.360 33.333 0.00 0.00 42.10 2.83
4153 4413 6.090628 GCATGTTCTCAGAAACAAACAAACAA 59.909 34.615 0.00 0.00 42.10 2.83
4156 4416 5.806502 CAGCATGTTCTCAGAAACAAACAAA 59.193 36.000 0.00 0.00 42.10 2.83
4168 4428 1.071228 ACACAGCTCAGCATGTTCTCA 59.929 47.619 0.00 0.00 37.40 3.27
4169 4429 1.805869 ACACAGCTCAGCATGTTCTC 58.194 50.000 0.00 0.00 37.40 2.87
4171 4431 1.068748 CCAACACAGCTCAGCATGTTC 60.069 52.381 14.71 0.00 37.80 3.18
4211 4471 2.481276 CGGCCACTCGTCATATTCTCAA 60.481 50.000 2.24 0.00 0.00 3.02
4229 4489 2.704725 AACAATCACAACATGTCGGC 57.295 45.000 0.00 0.00 0.00 5.54
4230 4490 7.481483 CAGTAAATAACAATCACAACATGTCGG 59.519 37.037 0.00 0.00 0.00 4.79
4439 4699 2.659016 CTCTTGACGAGCTGGCCA 59.341 61.111 4.71 4.71 31.99 5.36
4492 4752 0.462759 ACTTAGAGATGCCGCCTTGC 60.463 55.000 0.00 0.00 0.00 4.01
4499 4759 6.112058 AGTCAATCAAGAACTTAGAGATGCC 58.888 40.000 0.00 0.00 0.00 4.40
4538 4802 7.121168 CCCTGTATGCAGAATTAAGTTTCTTGA 59.879 37.037 12.93 0.00 45.28 3.02
4549 4837 4.895297 CCCAATTACCCTGTATGCAGAATT 59.105 41.667 12.93 7.64 45.28 2.17
4555 4843 1.133482 AGGCCCAATTACCCTGTATGC 60.133 52.381 0.00 0.00 0.00 3.14
4564 4852 1.285078 AGGAGGACAAGGCCCAATTAC 59.715 52.381 0.00 0.00 0.00 1.89
4566 4854 0.786435 AAGGAGGACAAGGCCCAATT 59.214 50.000 0.00 0.00 0.00 2.32
4567 4855 1.681229 TAAGGAGGACAAGGCCCAAT 58.319 50.000 0.00 0.00 0.00 3.16
4573 4862 1.275291 TGCGTCTTAAGGAGGACAAGG 59.725 52.381 1.85 0.00 33.19 3.61
4580 4869 5.122396 AGCACTTTAATTGCGTCTTAAGGAG 59.878 40.000 1.85 0.00 45.15 3.69
4608 4897 2.751259 TGATGTTGATGGCTTGAAGCTC 59.249 45.455 17.59 8.28 41.99 4.09
4612 4901 3.159472 AGCTTGATGTTGATGGCTTGAA 58.841 40.909 0.00 0.00 0.00 2.69
4649 4938 1.601430 GCCAGCATCGAGGAAGAAATC 59.399 52.381 0.00 0.00 0.00 2.17
4670 4959 0.878961 GAACGACGCCAGAAACACCT 60.879 55.000 0.00 0.00 0.00 4.00
4774 5070 2.224784 CCAACTAACCACAACGCCTTAC 59.775 50.000 0.00 0.00 0.00 2.34
4781 5079 2.380941 ACCAACCCAACTAACCACAAC 58.619 47.619 0.00 0.00 0.00 3.32
4817 5115 4.072131 TGCTACAAAAAGATCCTCACACC 58.928 43.478 0.00 0.00 0.00 4.16
4823 5121 5.352569 CACTTCGATGCTACAAAAAGATCCT 59.647 40.000 0.00 0.00 0.00 3.24
4909 5208 3.711190 AGCAAACAGGAAAAAGGACCAAT 59.289 39.130 0.00 0.00 0.00 3.16
4927 5226 3.291809 TCGACATTGTTCGACTAGCAA 57.708 42.857 7.08 0.00 43.01 3.91
5171 5470 5.669477 ACTGAGATCAAGATTGCTACTTCC 58.331 41.667 0.00 0.00 0.00 3.46
5172 5471 7.434897 CAGTACTGAGATCAAGATTGCTACTTC 59.565 40.741 18.45 0.00 0.00 3.01
5191 5492 2.620585 TCGCAGATCCAGATCAGTACTG 59.379 50.000 17.17 17.17 40.22 2.74
5194 5495 4.100035 ACAAATCGCAGATCCAGATCAGTA 59.900 41.667 10.17 0.00 45.12 2.74
5196 5497 3.464907 ACAAATCGCAGATCCAGATCAG 58.535 45.455 10.17 3.24 45.12 2.90
5198 5499 5.106791 CCAATACAAATCGCAGATCCAGATC 60.107 44.000 0.00 0.00 45.12 2.75
5214 5515 1.281867 CCCTCAGAGGTGCCAATACAA 59.718 52.381 15.86 0.00 31.93 2.41
5233 5534 2.766828 ACAGGCACCAGATTACTACTCC 59.233 50.000 0.00 0.00 0.00 3.85
5341 5648 2.463589 CTTAGGCCGGGCACACAGAA 62.464 60.000 31.59 12.31 0.00 3.02
5374 5684 1.442886 ATGAAGGGTTTGGGGAGCCA 61.443 55.000 0.00 0.00 39.66 4.75
5390 5700 1.244816 CGTCCGTCCAGGCTATATGA 58.755 55.000 0.00 0.00 40.77 2.15
5398 5708 4.760047 CCAAGCCGTCCGTCCAGG 62.760 72.222 0.00 0.00 42.97 4.45
5435 5755 0.971447 GGAGCCCGTCTAGGTCAGTT 60.971 60.000 0.00 0.00 38.74 3.16
5436 5756 1.380112 GGAGCCCGTCTAGGTCAGT 60.380 63.158 0.00 0.00 38.74 3.41
5437 5757 1.076632 AGGAGCCCGTCTAGGTCAG 60.077 63.158 0.00 0.00 38.74 3.51
5438 5758 1.076923 GAGGAGCCCGTCTAGGTCA 60.077 63.158 0.00 0.00 38.74 4.02
5439 5759 2.188161 CGAGGAGCCCGTCTAGGTC 61.188 68.421 0.00 0.00 38.74 3.85
5440 5760 2.124236 CGAGGAGCCCGTCTAGGT 60.124 66.667 0.00 0.00 38.74 3.08
5443 5763 1.091771 CGTAACGAGGAGCCCGTCTA 61.092 60.000 0.00 0.00 39.57 2.59
5457 5777 1.589727 CGCCGTATGGGACCGTAAC 60.590 63.158 2.41 0.00 38.47 2.50
5461 5781 3.829044 TCACGCCGTATGGGACCG 61.829 66.667 2.41 0.28 38.47 4.79
5464 5784 1.679641 TCAGTCACGCCGTATGGGA 60.680 57.895 2.41 0.00 38.47 4.37
5465 5785 1.518572 GTCAGTCACGCCGTATGGG 60.519 63.158 2.41 0.00 39.58 4.00
5467 5787 1.872234 CGGTCAGTCACGCCGTATG 60.872 63.158 0.00 0.00 40.53 2.39
5473 5793 3.188786 GATGCCGGTCAGTCACGC 61.189 66.667 1.90 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.