Multiple sequence alignment - TraesCS7A01G248600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G248600 chr7A 100.000 3366 0 0 1 3366 230564319 230567684 0.000000e+00 6216.0
1 TraesCS7A01G248600 chr7A 91.600 500 39 3 1 497 157420777 157420278 0.000000e+00 688.0
2 TraesCS7A01G248600 chr7A 89.744 273 26 2 498 769 601971663 601971392 6.910000e-92 348.0
3 TraesCS7A01G248600 chr7A 95.833 96 4 0 3203 3298 735412103 735412198 4.500000e-34 156.0
4 TraesCS7A01G248600 chr7D 92.988 2410 115 27 834 3236 217873274 217875636 0.000000e+00 3465.0
5 TraesCS7A01G248600 chr7D 91.667 108 7 2 3188 3295 554586038 554586143 7.520000e-32 148.0
6 TraesCS7A01G248600 chr7D 100.000 28 0 0 2890 2917 217875529 217875502 6.000000e-03 52.8
7 TraesCS7A01G248600 chr7B 92.758 1864 93 21 843 2701 182597459 182595633 0.000000e+00 2656.0
8 TraesCS7A01G248600 chr7B 91.699 518 28 4 2719 3236 182595568 182595066 0.000000e+00 704.0
9 TraesCS7A01G248600 chr4D 91.903 494 37 3 1 492 108255926 108256418 0.000000e+00 688.0
10 TraesCS7A01G248600 chr4D 94.118 102 6 0 3203 3304 289339810 289339911 4.500000e-34 156.0
11 TraesCS7A01G248600 chr4B 91.383 499 40 3 1 497 404179451 404178954 0.000000e+00 680.0
12 TraesCS7A01G248600 chr4B 91.182 499 40 4 1 497 191715755 191715259 0.000000e+00 675.0
13 TraesCS7A01G248600 chr1D 91.498 494 40 2 1 492 65560957 65561450 0.000000e+00 678.0
14 TraesCS7A01G248600 chr1B 91.498 494 40 2 1 492 134732893 134732400 0.000000e+00 678.0
15 TraesCS7A01G248600 chr5B 90.964 498 43 2 1 497 642883010 642883506 0.000000e+00 669.0
16 TraesCS7A01G248600 chr5B 92.381 105 8 0 3191 3295 474772778 474772882 2.090000e-32 150.0
17 TraesCS7A01G248600 chr1A 91.129 496 39 5 1 492 584565540 584565046 0.000000e+00 667.0
18 TraesCS7A01G248600 chr1A 84.080 201 31 1 498 698 286080538 286080339 3.430000e-45 193.0
19 TraesCS7A01G248600 chr1A 90.991 111 8 2 3204 3313 351606858 351606749 7.520000e-32 148.0
20 TraesCS7A01G248600 chr3D 90.619 501 43 4 1 497 535431727 535431227 0.000000e+00 662.0
21 TraesCS7A01G248600 chr5A 88.192 271 28 2 498 768 410855338 410855604 1.510000e-83 320.0
22 TraesCS7A01G248600 chr5A 100.000 28 0 0 769 796 89703554 89703527 6.000000e-03 52.8
23 TraesCS7A01G248600 chrUn 95.833 96 4 0 3203 3298 71312856 71312951 4.500000e-34 156.0
24 TraesCS7A01G248600 chr6A 96.739 92 3 0 3204 3295 457850372 457850463 1.620000e-33 154.0
25 TraesCS7A01G248600 chr2D 94.949 99 4 1 3204 3302 112543905 112543808 1.620000e-33 154.0
26 TraesCS7A01G248600 chr6D 88.430 121 8 5 3188 3306 351138635 351138751 1.260000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G248600 chr7A 230564319 230567684 3365 False 6216 6216 100.0000 1 3366 1 chr7A.!!$F1 3365
1 TraesCS7A01G248600 chr7D 217873274 217875636 2362 False 3465 3465 92.9880 834 3236 1 chr7D.!!$F1 2402
2 TraesCS7A01G248600 chr7B 182595066 182597459 2393 True 1680 2656 92.2285 843 3236 2 chr7B.!!$R1 2393
3 TraesCS7A01G248600 chr3D 535431227 535431727 500 True 662 662 90.6190 1 497 1 chr3D.!!$R1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 657 0.032813 ATAAGTTGGCTGCCCATGCT 60.033 50.0 17.53 5.92 41.78 3.79 F
1620 1629 0.107214 TTTCCCGGCATCCATCTCAC 60.107 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2196 0.096454 TCGTCGATGTACTGTGCGAG 59.904 55.0 4.21 0.0 33.00 5.03 R
2551 2560 0.100682 CTCATGCTGCCAATGCTGTC 59.899 55.0 0.00 0.0 38.57 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 6.879458 CCCTGCTGTTAATCTAAGTAGTTTGT 59.121 38.462 0.00 0.00 0.00 2.83
138 139 9.878599 AATCTAAGTAGTTTGTTGTCATTTTCG 57.121 29.630 0.00 0.00 0.00 3.46
172 173 5.291178 TGTTTGATCTCATTTGGTTGCTTG 58.709 37.500 0.00 0.00 0.00 4.01
183 184 2.079925 TGGTTGCTTGTTTTGTTTGCC 58.920 42.857 0.00 0.00 0.00 4.52
184 185 1.061857 GGTTGCTTGTTTTGTTTGCCG 59.938 47.619 0.00 0.00 0.00 5.69
185 186 1.729517 GTTGCTTGTTTTGTTTGCCGT 59.270 42.857 0.00 0.00 0.00 5.68
198 199 2.980233 GCCGTCAGTGCTTGCCTT 60.980 61.111 0.00 0.00 0.00 4.35
208 209 2.064014 GTGCTTGCCTTTTTGATCTGC 58.936 47.619 0.00 0.00 0.00 4.26
209 210 1.965643 TGCTTGCCTTTTTGATCTGCT 59.034 42.857 0.00 0.00 0.00 4.24
223 224 2.908688 TCTGCTGTCAGTTGTGCTTA 57.091 45.000 0.93 0.00 41.10 3.09
224 225 2.483876 TCTGCTGTCAGTTGTGCTTAC 58.516 47.619 0.93 0.00 41.10 2.34
247 248 0.401356 TGTGCTGATCATGTGGTGGT 59.599 50.000 0.00 0.00 0.00 4.16
249 250 2.039613 TGTGCTGATCATGTGGTGGTAA 59.960 45.455 0.00 0.00 0.00 2.85
270 271 2.183679 GGCCACCACATTTAAATGGGA 58.816 47.619 28.28 0.00 42.45 4.37
287 288 1.197721 GGGATGAGCAGAACACAAACG 59.802 52.381 0.00 0.00 0.00 3.60
290 291 0.657312 TGAGCAGAACACAAACGCTG 59.343 50.000 0.00 0.00 31.86 5.18
291 292 3.907893 GCAGAACACAAACGCTGC 58.092 55.556 0.00 0.00 45.64 5.25
299 300 0.526096 CACAAACGCTGCTTGCAACT 60.526 50.000 0.00 0.00 43.06 3.16
305 306 1.002468 ACGCTGCTTGCAACTAAACAG 60.002 47.619 0.00 0.00 43.06 3.16
307 308 1.932156 GCTGCTTGCAACTAAACAGCC 60.932 52.381 16.76 5.50 43.58 4.85
311 312 2.542824 GCTTGCAACTAAACAGCCGAAA 60.543 45.455 0.00 0.00 0.00 3.46
325 326 1.133790 GCCGAAATTTGCATCTGCTCT 59.866 47.619 0.00 0.00 42.66 4.09
330 331 1.760192 ATTTGCATCTGCTCTCACCC 58.240 50.000 3.53 0.00 42.66 4.61
334 335 1.908619 TGCATCTGCTCTCACCCTAAA 59.091 47.619 3.53 0.00 42.66 1.85
344 346 3.875134 CTCTCACCCTAAACACAAAACGT 59.125 43.478 0.00 0.00 0.00 3.99
356 358 3.004944 ACACAAAACGTCAACCAAACAGT 59.995 39.130 0.00 0.00 0.00 3.55
359 361 4.696402 ACAAAACGTCAACCAAACAGTAGA 59.304 37.500 0.00 0.00 0.00 2.59
363 365 2.224209 CGTCAACCAAACAGTAGAGGGT 60.224 50.000 0.00 0.00 0.00 4.34
364 366 3.006110 CGTCAACCAAACAGTAGAGGGTA 59.994 47.826 0.00 0.00 0.00 3.69
365 367 4.501915 CGTCAACCAAACAGTAGAGGGTAA 60.502 45.833 0.00 0.00 0.00 2.85
366 368 4.995487 GTCAACCAAACAGTAGAGGGTAAG 59.005 45.833 0.00 0.00 0.00 2.34
367 369 4.657039 TCAACCAAACAGTAGAGGGTAAGT 59.343 41.667 0.00 0.00 0.00 2.24
395 400 1.216178 GCGATGCAGGCAACCAAAT 59.784 52.632 7.59 0.00 37.17 2.32
438 443 2.846206 AGGGTGCATATGAAGAACCAGA 59.154 45.455 6.97 0.00 32.28 3.86
461 466 5.012239 ACTGGTTGAAGATGTACATGCAAT 58.988 37.500 14.43 0.00 0.00 3.56
486 491 4.870650 AGGTACTGTAGCGAACTGCAACT 61.871 47.826 10.98 0.00 43.01 3.16
493 498 2.748461 GCGAACTGCAACTAAACACA 57.252 45.000 0.00 0.00 45.45 3.72
497 502 1.305201 ACTGCAACTAAACACACCCG 58.695 50.000 0.00 0.00 0.00 5.28
498 503 1.305201 CTGCAACTAAACACACCCGT 58.695 50.000 0.00 0.00 0.00 5.28
499 504 1.673920 CTGCAACTAAACACACCCGTT 59.326 47.619 0.00 0.00 0.00 4.44
500 505 1.402259 TGCAACTAAACACACCCGTTG 59.598 47.619 0.00 0.00 38.31 4.10
501 506 1.402613 GCAACTAAACACACCCGTTGT 59.597 47.619 0.00 0.00 39.97 3.32
512 517 2.779755 ACCCGTTGTGAATGCTATGA 57.220 45.000 0.00 0.00 0.00 2.15
513 518 3.066291 ACCCGTTGTGAATGCTATGAA 57.934 42.857 0.00 0.00 0.00 2.57
514 519 2.747446 ACCCGTTGTGAATGCTATGAAC 59.253 45.455 0.00 0.00 0.00 3.18
515 520 2.746904 CCCGTTGTGAATGCTATGAACA 59.253 45.455 0.00 0.00 0.00 3.18
516 521 3.190327 CCCGTTGTGAATGCTATGAACAA 59.810 43.478 0.00 0.00 0.00 2.83
517 522 4.142403 CCCGTTGTGAATGCTATGAACAAT 60.142 41.667 0.00 0.00 33.67 2.71
518 523 4.794762 CCGTTGTGAATGCTATGAACAATG 59.205 41.667 0.00 0.00 37.45 2.82
519 524 5.391843 CCGTTGTGAATGCTATGAACAATGA 60.392 40.000 7.45 0.00 39.15 2.57
520 525 6.085573 CGTTGTGAATGCTATGAACAATGAA 58.914 36.000 0.00 0.00 39.15 2.57
521 526 6.249893 CGTTGTGAATGCTATGAACAATGAAG 59.750 38.462 0.00 0.00 39.15 3.02
522 527 6.198650 TGTGAATGCTATGAACAATGAAGG 57.801 37.500 0.00 0.00 0.00 3.46
523 528 5.945191 TGTGAATGCTATGAACAATGAAGGA 59.055 36.000 0.00 0.00 0.00 3.36
524 529 6.433716 TGTGAATGCTATGAACAATGAAGGAA 59.566 34.615 0.00 0.00 0.00 3.36
525 530 6.971184 GTGAATGCTATGAACAATGAAGGAAG 59.029 38.462 0.00 0.00 0.00 3.46
526 531 6.095860 TGAATGCTATGAACAATGAAGGAAGG 59.904 38.462 0.00 0.00 0.00 3.46
527 532 5.178096 TGCTATGAACAATGAAGGAAGGA 57.822 39.130 0.00 0.00 0.00 3.36
528 533 5.569355 TGCTATGAACAATGAAGGAAGGAA 58.431 37.500 0.00 0.00 0.00 3.36
529 534 5.415701 TGCTATGAACAATGAAGGAAGGAAC 59.584 40.000 0.00 0.00 0.00 3.62
530 535 5.415701 GCTATGAACAATGAAGGAAGGAACA 59.584 40.000 0.00 0.00 0.00 3.18
531 536 6.071952 GCTATGAACAATGAAGGAAGGAACAA 60.072 38.462 0.00 0.00 0.00 2.83
532 537 6.729690 ATGAACAATGAAGGAAGGAACAAA 57.270 33.333 0.00 0.00 0.00 2.83
533 538 6.147864 TGAACAATGAAGGAAGGAACAAAG 57.852 37.500 0.00 0.00 0.00 2.77
534 539 4.590850 ACAATGAAGGAAGGAACAAAGC 57.409 40.909 0.00 0.00 0.00 3.51
535 540 3.321968 ACAATGAAGGAAGGAACAAAGCC 59.678 43.478 0.00 0.00 0.00 4.35
536 541 2.746279 TGAAGGAAGGAACAAAGCCA 57.254 45.000 0.00 0.00 0.00 4.75
537 542 3.025322 TGAAGGAAGGAACAAAGCCAA 57.975 42.857 0.00 0.00 0.00 4.52
538 543 2.958355 TGAAGGAAGGAACAAAGCCAAG 59.042 45.455 0.00 0.00 0.00 3.61
539 544 2.755952 AGGAAGGAACAAAGCCAAGT 57.244 45.000 0.00 0.00 0.00 3.16
540 545 2.310538 AGGAAGGAACAAAGCCAAGTG 58.689 47.619 0.00 0.00 0.00 3.16
541 546 2.091885 AGGAAGGAACAAAGCCAAGTGA 60.092 45.455 0.00 0.00 0.00 3.41
542 547 2.893489 GGAAGGAACAAAGCCAAGTGAT 59.107 45.455 0.00 0.00 0.00 3.06
543 548 3.305608 GGAAGGAACAAAGCCAAGTGATG 60.306 47.826 0.00 0.00 0.00 3.07
555 560 4.422073 CCAAGTGATGGGCTAAGTATGA 57.578 45.455 0.00 0.00 46.27 2.15
556 561 4.780815 CCAAGTGATGGGCTAAGTATGAA 58.219 43.478 0.00 0.00 46.27 2.57
557 562 4.818546 CCAAGTGATGGGCTAAGTATGAAG 59.181 45.833 0.00 0.00 46.27 3.02
558 563 5.396772 CCAAGTGATGGGCTAAGTATGAAGA 60.397 44.000 0.00 0.00 46.27 2.87
559 564 5.543507 AGTGATGGGCTAAGTATGAAGAG 57.456 43.478 0.00 0.00 0.00 2.85
560 565 4.346418 AGTGATGGGCTAAGTATGAAGAGG 59.654 45.833 0.00 0.00 0.00 3.69
561 566 3.071602 TGATGGGCTAAGTATGAAGAGGC 59.928 47.826 0.00 0.00 0.00 4.70
562 567 2.764269 TGGGCTAAGTATGAAGAGGCT 58.236 47.619 0.00 0.00 0.00 4.58
563 568 3.923648 TGGGCTAAGTATGAAGAGGCTA 58.076 45.455 0.00 0.00 0.00 3.93
564 569 4.295201 TGGGCTAAGTATGAAGAGGCTAA 58.705 43.478 0.00 0.00 0.00 3.09
565 570 4.719773 TGGGCTAAGTATGAAGAGGCTAAA 59.280 41.667 0.00 0.00 0.00 1.85
566 571 5.190925 TGGGCTAAGTATGAAGAGGCTAAAA 59.809 40.000 0.00 0.00 0.00 1.52
567 572 5.760743 GGGCTAAGTATGAAGAGGCTAAAAG 59.239 44.000 0.00 0.00 0.00 2.27
568 573 5.237561 GGCTAAGTATGAAGAGGCTAAAAGC 59.762 44.000 0.00 0.00 41.46 3.51
581 586 4.830826 GCTAAAAGCCTGTTGTGTAACT 57.169 40.909 0.00 0.00 34.94 2.24
582 587 5.183014 GCTAAAAGCCTGTTGTGTAACTT 57.817 39.130 0.00 0.00 34.94 2.66
583 588 5.212934 GCTAAAAGCCTGTTGTGTAACTTC 58.787 41.667 0.00 0.00 34.94 3.01
584 589 5.220970 GCTAAAAGCCTGTTGTGTAACTTCA 60.221 40.000 0.00 0.00 34.94 3.02
585 590 4.900635 AAAGCCTGTTGTGTAACTTCAG 57.099 40.909 0.00 0.00 38.04 3.02
586 591 3.560636 AGCCTGTTGTGTAACTTCAGT 57.439 42.857 0.00 0.00 36.86 3.41
587 592 3.467803 AGCCTGTTGTGTAACTTCAGTC 58.532 45.455 0.00 0.00 36.86 3.51
588 593 3.134804 AGCCTGTTGTGTAACTTCAGTCT 59.865 43.478 0.00 0.00 36.86 3.24
589 594 4.344102 AGCCTGTTGTGTAACTTCAGTCTA 59.656 41.667 0.00 0.00 36.86 2.59
590 595 4.686554 GCCTGTTGTGTAACTTCAGTCTAG 59.313 45.833 0.00 0.00 36.86 2.43
591 596 4.686554 CCTGTTGTGTAACTTCAGTCTAGC 59.313 45.833 0.00 0.00 36.86 3.42
592 597 5.509840 CCTGTTGTGTAACTTCAGTCTAGCT 60.510 44.000 0.00 0.00 36.86 3.32
593 598 5.289595 TGTTGTGTAACTTCAGTCTAGCTG 58.710 41.667 0.00 7.59 41.77 4.24
594 599 5.068591 TGTTGTGTAACTTCAGTCTAGCTGA 59.931 40.000 11.38 11.38 44.83 4.26
595 600 5.378292 TGTGTAACTTCAGTCTAGCTGAG 57.622 43.478 13.97 11.56 44.89 3.35
606 611 5.753721 AGTCTAGCTGAGGTCAGAAAAAT 57.246 39.130 11.29 0.00 46.59 1.82
607 612 6.120507 AGTCTAGCTGAGGTCAGAAAAATT 57.879 37.500 11.29 0.00 46.59 1.82
608 613 7.246171 AGTCTAGCTGAGGTCAGAAAAATTA 57.754 36.000 11.29 0.00 46.59 1.40
609 614 7.680730 AGTCTAGCTGAGGTCAGAAAAATTAA 58.319 34.615 11.29 0.00 46.59 1.40
610 615 8.157476 AGTCTAGCTGAGGTCAGAAAAATTAAA 58.843 33.333 11.29 0.00 46.59 1.52
611 616 8.784043 GTCTAGCTGAGGTCAGAAAAATTAAAA 58.216 33.333 11.29 0.00 46.59 1.52
612 617 9.003658 TCTAGCTGAGGTCAGAAAAATTAAAAG 57.996 33.333 11.29 0.00 46.59 2.27
613 618 7.823745 AGCTGAGGTCAGAAAAATTAAAAGA 57.176 32.000 11.29 0.00 46.59 2.52
614 619 7.880105 AGCTGAGGTCAGAAAAATTAAAAGAG 58.120 34.615 11.29 0.00 46.59 2.85
615 620 7.721399 AGCTGAGGTCAGAAAAATTAAAAGAGA 59.279 33.333 11.29 0.00 46.59 3.10
616 621 8.352942 GCTGAGGTCAGAAAAATTAAAAGAGAA 58.647 33.333 11.29 0.00 46.59 2.87
627 632 8.515473 AAAATTAAAAGAGAATGTAACGTGGC 57.485 30.769 0.00 0.00 0.00 5.01
628 633 7.448748 AATTAAAAGAGAATGTAACGTGGCT 57.551 32.000 0.00 0.00 0.00 4.75
629 634 4.749245 AAAAGAGAATGTAACGTGGCTG 57.251 40.909 0.00 0.00 0.00 4.85
630 635 1.726853 AGAGAATGTAACGTGGCTGC 58.273 50.000 0.00 0.00 0.00 5.25
631 636 1.001974 AGAGAATGTAACGTGGCTGCA 59.998 47.619 0.50 0.00 0.00 4.41
632 637 2.009774 GAGAATGTAACGTGGCTGCAT 58.990 47.619 0.50 0.00 0.00 3.96
633 638 3.118775 AGAGAATGTAACGTGGCTGCATA 60.119 43.478 0.50 0.00 0.00 3.14
634 639 3.808728 AGAATGTAACGTGGCTGCATAT 58.191 40.909 0.50 0.00 0.00 1.78
635 640 4.956085 AGAATGTAACGTGGCTGCATATA 58.044 39.130 0.50 0.00 0.00 0.86
636 641 5.364778 AGAATGTAACGTGGCTGCATATAA 58.635 37.500 0.50 0.00 0.00 0.98
637 642 5.466728 AGAATGTAACGTGGCTGCATATAAG 59.533 40.000 0.50 0.00 0.00 1.73
638 643 4.131649 TGTAACGTGGCTGCATATAAGT 57.868 40.909 0.50 0.00 0.00 2.24
639 644 4.509616 TGTAACGTGGCTGCATATAAGTT 58.490 39.130 0.50 2.46 0.00 2.66
640 645 4.331443 TGTAACGTGGCTGCATATAAGTTG 59.669 41.667 0.50 0.00 0.00 3.16
641 646 2.288666 ACGTGGCTGCATATAAGTTGG 58.711 47.619 0.50 0.00 0.00 3.77
642 647 1.002468 CGTGGCTGCATATAAGTTGGC 60.002 52.381 0.50 0.00 0.00 4.52
643 648 2.301346 GTGGCTGCATATAAGTTGGCT 58.699 47.619 0.50 0.00 0.00 4.75
644 649 2.033801 GTGGCTGCATATAAGTTGGCTG 59.966 50.000 0.50 0.00 0.00 4.85
645 650 1.000938 GGCTGCATATAAGTTGGCTGC 60.001 52.381 0.50 0.00 46.34 5.25
646 651 1.000938 GCTGCATATAAGTTGGCTGCC 60.001 52.381 12.87 12.87 42.89 4.85
647 652 1.610522 CTGCATATAAGTTGGCTGCCC 59.389 52.381 17.53 0.80 31.89 5.36
648 653 1.064091 TGCATATAAGTTGGCTGCCCA 60.064 47.619 17.53 1.07 40.06 5.36
649 654 2.242043 GCATATAAGTTGGCTGCCCAT 58.758 47.619 17.53 4.31 41.78 4.00
650 655 2.029649 GCATATAAGTTGGCTGCCCATG 60.030 50.000 17.53 8.84 41.78 3.66
651 656 1.691196 TATAAGTTGGCTGCCCATGC 58.309 50.000 17.53 3.52 41.78 4.06
652 657 0.032813 ATAAGTTGGCTGCCCATGCT 60.033 50.000 17.53 5.92 41.78 3.79
653 658 0.623194 TAAGTTGGCTGCCCATGCTA 59.377 50.000 17.53 0.00 41.78 3.49
654 659 0.251742 AAGTTGGCTGCCCATGCTAA 60.252 50.000 17.53 0.00 41.78 3.09
655 660 0.251742 AGTTGGCTGCCCATGCTAAA 60.252 50.000 17.53 0.00 41.78 1.85
656 661 0.607620 GTTGGCTGCCCATGCTAAAA 59.392 50.000 17.53 0.00 41.78 1.52
657 662 1.207811 GTTGGCTGCCCATGCTAAAAT 59.792 47.619 17.53 0.00 41.78 1.82
658 663 1.570803 TGGCTGCCCATGCTAAAATT 58.429 45.000 17.53 0.00 35.79 1.82
659 664 1.907936 TGGCTGCCCATGCTAAAATTT 59.092 42.857 17.53 0.00 35.79 1.82
660 665 3.102972 TGGCTGCCCATGCTAAAATTTA 58.897 40.909 17.53 0.00 35.79 1.40
661 666 3.710677 TGGCTGCCCATGCTAAAATTTAT 59.289 39.130 17.53 0.00 35.79 1.40
662 667 4.060205 GGCTGCCCATGCTAAAATTTATG 58.940 43.478 7.66 0.00 38.71 1.90
663 668 4.060205 GCTGCCCATGCTAAAATTTATGG 58.940 43.478 9.80 9.80 39.77 2.74
689 694 2.704725 TTTTCTGCCGAAGAATGTGC 57.295 45.000 1.95 0.00 44.46 4.57
690 695 0.881118 TTTCTGCCGAAGAATGTGCC 59.119 50.000 1.95 0.00 44.46 5.01
691 696 0.250684 TTCTGCCGAAGAATGTGCCA 60.251 50.000 0.00 0.00 40.09 4.92
692 697 0.955428 TCTGCCGAAGAATGTGCCAC 60.955 55.000 0.00 0.00 29.54 5.01
693 698 1.926511 CTGCCGAAGAATGTGCCACC 61.927 60.000 0.00 0.00 0.00 4.61
694 699 1.971167 GCCGAAGAATGTGCCACCA 60.971 57.895 0.00 0.00 0.00 4.17
695 700 1.523154 GCCGAAGAATGTGCCACCAA 61.523 55.000 0.00 0.00 0.00 3.67
696 701 0.958091 CCGAAGAATGTGCCACCAAA 59.042 50.000 0.00 0.00 0.00 3.28
697 702 1.545582 CCGAAGAATGTGCCACCAAAT 59.454 47.619 0.00 0.00 0.00 2.32
698 703 2.752354 CCGAAGAATGTGCCACCAAATA 59.248 45.455 0.00 0.00 0.00 1.40
699 704 3.381272 CCGAAGAATGTGCCACCAAATAT 59.619 43.478 0.00 0.00 0.00 1.28
700 705 4.578516 CCGAAGAATGTGCCACCAAATATA 59.421 41.667 0.00 0.00 0.00 0.86
701 706 5.505654 CCGAAGAATGTGCCACCAAATATAC 60.506 44.000 0.00 0.00 0.00 1.47
702 707 5.296780 CGAAGAATGTGCCACCAAATATACT 59.703 40.000 0.00 0.00 0.00 2.12
703 708 6.183360 CGAAGAATGTGCCACCAAATATACTT 60.183 38.462 0.00 0.00 0.00 2.24
704 709 6.699575 AGAATGTGCCACCAAATATACTTC 57.300 37.500 0.00 0.00 0.00 3.01
705 710 6.186957 AGAATGTGCCACCAAATATACTTCA 58.813 36.000 0.00 0.00 0.00 3.02
706 711 6.835488 AGAATGTGCCACCAAATATACTTCAT 59.165 34.615 0.00 0.00 0.00 2.57
707 712 5.833406 TGTGCCACCAAATATACTTCATG 57.167 39.130 0.00 0.00 0.00 3.07
708 713 5.260424 TGTGCCACCAAATATACTTCATGT 58.740 37.500 0.00 0.00 0.00 3.21
709 714 6.418946 TGTGCCACCAAATATACTTCATGTA 58.581 36.000 0.00 0.00 35.37 2.29
710 715 6.887002 TGTGCCACCAAATATACTTCATGTAA 59.113 34.615 0.00 0.00 34.45 2.41
711 716 7.559533 TGTGCCACCAAATATACTTCATGTAAT 59.440 33.333 0.00 0.00 34.45 1.89
712 717 8.076178 GTGCCACCAAATATACTTCATGTAATC 58.924 37.037 0.00 0.00 34.45 1.75
713 718 7.777440 TGCCACCAAATATACTTCATGTAATCA 59.223 33.333 0.00 0.00 34.45 2.57
714 719 8.629158 GCCACCAAATATACTTCATGTAATCAA 58.371 33.333 0.00 0.00 34.45 2.57
736 741 9.684448 ATCAAGAATGATTGTACTCGTACTATG 57.316 33.333 8.49 0.00 43.89 2.23
737 742 8.899771 TCAAGAATGATTGTACTCGTACTATGA 58.100 33.333 8.49 1.98 37.00 2.15
738 743 9.175060 CAAGAATGATTGTACTCGTACTATGAG 57.825 37.037 8.49 4.01 37.27 2.90
739 744 8.453238 AGAATGATTGTACTCGTACTATGAGT 57.547 34.615 14.18 14.18 45.66 3.41
740 745 9.557061 AGAATGATTGTACTCGTACTATGAGTA 57.443 33.333 12.43 12.43 42.30 2.59
744 749 9.946165 TGATTGTACTCGTACTATGAGTAAATG 57.054 33.333 16.57 0.00 45.29 2.32
747 752 7.637229 TGTACTCGTACTATGAGTAAATGAGC 58.363 38.462 16.57 6.98 45.29 4.26
748 753 6.945938 ACTCGTACTATGAGTAAATGAGCT 57.054 37.500 8.92 0.00 42.30 4.09
749 754 6.961576 ACTCGTACTATGAGTAAATGAGCTC 58.038 40.000 6.82 6.82 42.30 4.09
750 755 6.768861 ACTCGTACTATGAGTAAATGAGCTCT 59.231 38.462 16.19 0.00 42.30 4.09
751 756 7.041644 ACTCGTACTATGAGTAAATGAGCTCTC 60.042 40.741 16.19 3.23 42.30 3.20
752 757 6.993308 TCGTACTATGAGTAAATGAGCTCTCT 59.007 38.462 16.19 5.56 31.62 3.10
753 758 7.499563 TCGTACTATGAGTAAATGAGCTCTCTT 59.500 37.037 16.19 10.40 31.62 2.85
754 759 8.132362 CGTACTATGAGTAAATGAGCTCTCTTT 58.868 37.037 16.19 15.98 31.62 2.52
755 760 9.810545 GTACTATGAGTAAATGAGCTCTCTTTT 57.189 33.333 16.19 13.81 39.36 2.27
757 762 9.160496 ACTATGAGTAAATGAGCTCTCTTTTTG 57.840 33.333 16.19 3.81 37.83 2.44
758 763 6.246420 TGAGTAAATGAGCTCTCTTTTTGC 57.754 37.500 16.19 12.23 37.83 3.68
759 764 5.182001 TGAGTAAATGAGCTCTCTTTTTGCC 59.818 40.000 16.19 7.92 37.83 4.52
760 765 3.949842 AAATGAGCTCTCTTTTTGCCC 57.050 42.857 16.19 0.00 34.56 5.36
761 766 2.895242 ATGAGCTCTCTTTTTGCCCT 57.105 45.000 16.19 0.00 0.00 5.19
762 767 2.664402 TGAGCTCTCTTTTTGCCCTT 57.336 45.000 16.19 0.00 0.00 3.95
763 768 3.788227 TGAGCTCTCTTTTTGCCCTTA 57.212 42.857 16.19 0.00 0.00 2.69
764 769 4.098914 TGAGCTCTCTTTTTGCCCTTAA 57.901 40.909 16.19 0.00 0.00 1.85
765 770 4.469657 TGAGCTCTCTTTTTGCCCTTAAA 58.530 39.130 16.19 0.00 0.00 1.52
766 771 4.892934 TGAGCTCTCTTTTTGCCCTTAAAA 59.107 37.500 16.19 0.00 0.00 1.52
767 772 5.362430 TGAGCTCTCTTTTTGCCCTTAAAAA 59.638 36.000 16.19 0.00 37.23 1.94
809 814 9.823647 TGATCTCATAGAAAAATACAGGTTCTC 57.176 33.333 0.00 0.00 33.70 2.87
810 815 9.267084 GATCTCATAGAAAAATACAGGTTCTCC 57.733 37.037 0.00 0.00 33.70 3.71
811 816 7.565680 TCTCATAGAAAAATACAGGTTCTCCC 58.434 38.462 0.00 0.00 33.70 4.30
812 817 6.346096 TCATAGAAAAATACAGGTTCTCCCG 58.654 40.000 0.00 0.00 38.74 5.14
813 818 4.903045 AGAAAAATACAGGTTCTCCCGA 57.097 40.909 0.00 0.00 38.74 5.14
814 819 5.237236 AGAAAAATACAGGTTCTCCCGAA 57.763 39.130 0.00 0.00 38.74 4.30
815 820 5.627135 AGAAAAATACAGGTTCTCCCGAAA 58.373 37.500 0.00 0.00 38.74 3.46
816 821 6.066032 AGAAAAATACAGGTTCTCCCGAAAA 58.934 36.000 0.00 0.00 38.74 2.29
817 822 6.548251 AGAAAAATACAGGTTCTCCCGAAAAA 59.452 34.615 0.00 0.00 38.74 1.94
887 892 1.215647 GAGGACGACGAGCCACAAT 59.784 57.895 0.00 0.00 0.00 2.71
938 943 5.567138 AAATATCCTCTGAAAACCAAGCG 57.433 39.130 0.00 0.00 0.00 4.68
1236 1241 1.673009 CGGTAATGCCAACCACCGT 60.673 57.895 3.92 0.00 46.81 4.83
1241 1246 1.801309 AATGCCAACCACCGTTTCCG 61.801 55.000 0.00 0.00 0.00 4.30
1376 1381 2.821969 GTGATTCCACAAGGTGCTTCAT 59.178 45.455 0.00 0.00 42.72 2.57
1378 1383 2.957402 TTCCACAAGGTGCTTCATCT 57.043 45.000 0.00 0.00 35.89 2.90
1383 1388 3.054878 CACAAGGTGCTTCATCTTTTGC 58.945 45.455 0.00 0.00 31.84 3.68
1387 1392 3.754965 AGGTGCTTCATCTTTTGCAGTA 58.245 40.909 0.00 0.00 36.03 2.74
1399 1404 6.331369 TCTTTTGCAGTAAAAAGATGGAGG 57.669 37.500 7.12 0.00 46.26 4.30
1400 1405 6.068010 TCTTTTGCAGTAAAAAGATGGAGGA 58.932 36.000 7.12 0.00 46.26 3.71
1411 1418 3.967467 AGATGGAGGAATCAGCCAAAT 57.033 42.857 0.00 0.00 34.95 2.32
1481 1490 3.417069 AGGTGATGAACAATTCGGTCA 57.583 42.857 0.00 0.00 0.00 4.02
1598 1607 2.267045 GGTACGTACGAGTTGGGGT 58.733 57.895 24.41 0.00 0.00 4.95
1600 1609 1.402852 GGTACGTACGAGTTGGGGTTC 60.403 57.143 24.41 0.00 0.00 3.62
1601 1610 1.541588 GTACGTACGAGTTGGGGTTCT 59.458 52.381 24.41 0.00 0.00 3.01
1602 1611 1.043022 ACGTACGAGTTGGGGTTCTT 58.957 50.000 24.41 0.00 0.00 2.52
1603 1612 1.413812 ACGTACGAGTTGGGGTTCTTT 59.586 47.619 24.41 0.00 0.00 2.52
1604 1613 2.064014 CGTACGAGTTGGGGTTCTTTC 58.936 52.381 10.44 0.00 0.00 2.62
1606 1615 0.109913 ACGAGTTGGGGTTCTTTCCC 59.890 55.000 0.00 0.00 46.31 3.97
1614 1623 1.001393 GGTTCTTTCCCGGCATCCA 60.001 57.895 0.00 0.00 0.00 3.41
1615 1624 0.395724 GGTTCTTTCCCGGCATCCAT 60.396 55.000 0.00 0.00 0.00 3.41
1616 1625 1.025041 GTTCTTTCCCGGCATCCATC 58.975 55.000 0.00 0.00 0.00 3.51
1617 1626 0.918983 TTCTTTCCCGGCATCCATCT 59.081 50.000 0.00 0.00 0.00 2.90
1618 1627 0.469917 TCTTTCCCGGCATCCATCTC 59.530 55.000 0.00 0.00 0.00 2.75
1619 1628 0.181114 CTTTCCCGGCATCCATCTCA 59.819 55.000 0.00 0.00 0.00 3.27
1620 1629 0.107214 TTTCCCGGCATCCATCTCAC 60.107 55.000 0.00 0.00 0.00 3.51
1621 1630 1.271127 TTCCCGGCATCCATCTCACA 61.271 55.000 0.00 0.00 0.00 3.58
1622 1631 1.227764 CCCGGCATCCATCTCACAG 60.228 63.158 0.00 0.00 0.00 3.66
1623 1632 1.524002 CCGGCATCCATCTCACAGT 59.476 57.895 0.00 0.00 0.00 3.55
1624 1633 0.531532 CCGGCATCCATCTCACAGTC 60.532 60.000 0.00 0.00 0.00 3.51
1625 1634 0.531532 CGGCATCCATCTCACAGTCC 60.532 60.000 0.00 0.00 0.00 3.85
1626 1635 0.179034 GGCATCCATCTCACAGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
1627 1636 0.543277 GCATCCATCTCACAGTCCCA 59.457 55.000 0.00 0.00 0.00 4.37
1628 1637 1.065199 GCATCCATCTCACAGTCCCAA 60.065 52.381 0.00 0.00 0.00 4.12
1629 1638 2.618816 GCATCCATCTCACAGTCCCAAA 60.619 50.000 0.00 0.00 0.00 3.28
1630 1639 3.894759 CATCCATCTCACAGTCCCAAAT 58.105 45.455 0.00 0.00 0.00 2.32
1649 1658 3.876309 ATACCAATCCACCATACCCAC 57.124 47.619 0.00 0.00 0.00 4.61
1650 1659 0.629058 ACCAATCCACCATACCCACC 59.371 55.000 0.00 0.00 0.00 4.61
1657 1666 1.004361 ACCATACCCACCCCTCTCC 59.996 63.158 0.00 0.00 0.00 3.71
1669 1678 2.305009 CCCCTCTCCAAATTCATGAGC 58.695 52.381 0.00 0.00 0.00 4.26
1670 1679 2.091994 CCCCTCTCCAAATTCATGAGCT 60.092 50.000 0.00 0.00 0.00 4.09
1671 1680 3.626729 CCCCTCTCCAAATTCATGAGCTT 60.627 47.826 0.00 0.00 0.00 3.74
1682 1691 3.690475 TCATGAGCTTCTTCTCTGCAA 57.310 42.857 0.00 0.00 34.29 4.08
1747 1756 1.134965 CAGCCTCAAGTCCTTCGGTAG 60.135 57.143 0.00 0.00 0.00 3.18
1779 1788 2.161855 TCGCCGAGAACTTGGTAAGTA 58.838 47.619 9.51 0.00 41.91 2.24
1781 1790 2.614779 GCCGAGAACTTGGTAAGTACC 58.385 52.381 9.51 0.17 46.62 3.34
1783 1792 2.416431 CCGAGAACTTGGTAAGTACCCG 60.416 54.545 5.05 0.00 45.87 5.28
1784 1793 2.416431 CGAGAACTTGGTAAGTACCCGG 60.416 54.545 5.05 0.00 45.87 5.73
1785 1794 1.277273 AGAACTTGGTAAGTACCCGGC 59.723 52.381 0.00 0.00 45.87 6.13
1786 1795 1.002315 GAACTTGGTAAGTACCCGGCA 59.998 52.381 0.00 0.00 45.87 5.69
1789 1798 0.609662 TTGGTAAGTACCCGGCACTC 59.390 55.000 7.34 0.00 45.87 3.51
1790 1799 1.259840 TGGTAAGTACCCGGCACTCC 61.260 60.000 7.34 6.37 45.87 3.85
1791 1800 1.519246 GTAAGTACCCGGCACTCCC 59.481 63.158 7.34 0.00 0.00 4.30
1792 1801 1.078891 TAAGTACCCGGCACTCCCA 59.921 57.895 7.34 0.00 0.00 4.37
1794 1803 4.091939 GTACCCGGCACTCCCACC 62.092 72.222 0.00 0.00 0.00 4.61
1795 1804 4.326227 TACCCGGCACTCCCACCT 62.326 66.667 0.00 0.00 0.00 4.00
1796 1805 3.857521 TACCCGGCACTCCCACCTT 62.858 63.158 0.00 0.00 0.00 3.50
1797 1806 3.966543 CCCGGCACTCCCACCTTT 61.967 66.667 0.00 0.00 0.00 3.11
1798 1807 2.115266 CCGGCACTCCCACCTTTT 59.885 61.111 0.00 0.00 0.00 2.27
1799 1808 1.530655 CCGGCACTCCCACCTTTTT 60.531 57.895 0.00 0.00 0.00 1.94
1891 1900 1.205179 TGTGTCATGGCCAATTGATGC 59.795 47.619 10.96 7.77 0.00 3.91
1905 1914 5.466058 CCAATTGATGCACTCTCTGTATCTC 59.534 44.000 7.12 0.00 41.39 2.75
2086 2095 0.872388 CCTTCAACGGCTGGTACAAC 59.128 55.000 0.00 0.00 38.70 3.32
2126 2135 2.420687 GGGCAGGTACTTCCATCTTCTG 60.421 54.545 0.00 0.00 45.87 3.02
2169 2178 4.320714 CCAACATCACTCCACTCACATTTG 60.321 45.833 0.00 0.00 0.00 2.32
2176 2185 4.336433 CACTCCACTCACATTTGTTTGTCT 59.664 41.667 0.00 0.00 0.00 3.41
2187 2196 4.603231 TTTGTTTGTCTACGTTGGTGTC 57.397 40.909 0.00 0.00 0.00 3.67
2284 2293 3.032265 TGAATCTACCTCCTGCTAGCA 57.968 47.619 18.22 18.22 0.00 3.49
2287 2296 2.461300 TCTACCTCCTGCTAGCATGT 57.539 50.000 19.72 15.00 0.00 3.21
2310 2319 2.462456 TGTTGGAGCACTGACTGATC 57.538 50.000 0.00 0.00 34.24 2.92
2431 2440 7.047891 AGTGACAGAGAAGAGAGAGTATACAG 58.952 42.308 5.50 0.00 0.00 2.74
2515 2524 5.588648 ACGAGAAAGAAAAGATGAACACCAA 59.411 36.000 0.00 0.00 0.00 3.67
2531 2540 4.451900 ACACCAAATGTTCGAAGACTTCT 58.548 39.130 13.22 0.00 38.98 2.85
2532 2541 4.273480 ACACCAAATGTTCGAAGACTTCTG 59.727 41.667 13.22 7.09 38.98 3.02
2538 2547 0.319555 TTCGAAGACTTCTGTGGCGG 60.320 55.000 13.22 0.00 34.32 6.13
2603 2612 2.754472 CATGAGAGTGTCGTTGGTTCA 58.246 47.619 0.00 0.00 0.00 3.18
2606 2615 2.933906 TGAGAGTGTCGTTGGTTCAAAC 59.066 45.455 0.00 0.00 0.00 2.93
2691 2700 0.187117 TTTTGGGCCCACATGTCAGA 59.813 50.000 28.70 3.51 0.00 3.27
2692 2701 0.409092 TTTGGGCCCACATGTCAGAT 59.591 50.000 28.70 0.00 0.00 2.90
2693 2702 0.409092 TTGGGCCCACATGTCAGATT 59.591 50.000 28.70 0.00 0.00 2.40
2694 2703 0.409092 TGGGCCCACATGTCAGATTT 59.591 50.000 24.45 0.00 0.00 2.17
2695 2704 0.819582 GGGCCCACATGTCAGATTTG 59.180 55.000 19.95 0.00 0.00 2.32
2734 2793 7.065120 ACCTTTCTCTCATAATCTGGATCAG 57.935 40.000 0.00 0.00 0.00 2.90
3010 3069 4.810491 TCGGTTATAATGTTTAGAACGCCC 59.190 41.667 0.00 0.00 0.00 6.13
3011 3070 4.812626 CGGTTATAATGTTTAGAACGCCCT 59.187 41.667 0.00 0.00 0.00 5.19
3016 3075 1.344065 TGTTTAGAACGCCCTCTCCA 58.656 50.000 0.00 0.00 0.00 3.86
3022 3081 0.250513 GAACGCCCTCTCCAACTCAT 59.749 55.000 0.00 0.00 0.00 2.90
3046 3105 1.406477 CGGGAGGTAACCAACTTAGCC 60.406 57.143 0.00 0.00 33.89 3.93
3050 3109 3.369576 GGAGGTAACCAACTTAGCCTGAG 60.370 52.174 0.00 0.00 33.89 3.35
3217 3276 0.927767 ACTCATACTCCCTCCGTCCT 59.072 55.000 0.00 0.00 0.00 3.85
3236 3295 6.649557 CCGTCCTAAAATAAGTGTCTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
3237 3296 7.172703 CCGTCCTAAAATAAGTGTCTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
3238 3297 8.009974 CGTCCTAAAATAAGTGTCTCAACTTTG 58.990 37.037 0.00 0.00 40.77 2.77
3239 3298 8.837389 GTCCTAAAATAAGTGTCTCAACTTTGT 58.163 33.333 0.00 0.00 40.77 2.83
3248 3307 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
3249 3308 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
3250 3309 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
3251 3310 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
3288 3347 9.832445 ACTAAACTTGAGACACTTATTTTGAGA 57.168 29.630 0.00 0.00 0.00 3.27
3291 3350 7.678947 ACTTGAGACACTTATTTTGAGATGG 57.321 36.000 0.00 0.00 0.00 3.51
3292 3351 7.453393 ACTTGAGACACTTATTTTGAGATGGA 58.547 34.615 0.00 0.00 0.00 3.41
3293 3352 7.605691 ACTTGAGACACTTATTTTGAGATGGAG 59.394 37.037 0.00 0.00 0.00 3.86
3294 3353 6.409704 TGAGACACTTATTTTGAGATGGAGG 58.590 40.000 0.00 0.00 0.00 4.30
3295 3354 6.013379 TGAGACACTTATTTTGAGATGGAGGT 60.013 38.462 0.00 0.00 0.00 3.85
3296 3355 7.180229 TGAGACACTTATTTTGAGATGGAGGTA 59.820 37.037 0.00 0.00 0.00 3.08
3297 3356 7.560368 AGACACTTATTTTGAGATGGAGGTAG 58.440 38.462 0.00 0.00 0.00 3.18
3298 3357 6.116126 ACACTTATTTTGAGATGGAGGTAGC 58.884 40.000 0.00 0.00 0.00 3.58
3299 3358 6.115446 CACTTATTTTGAGATGGAGGTAGCA 58.885 40.000 0.00 0.00 0.00 3.49
3300 3359 6.259608 CACTTATTTTGAGATGGAGGTAGCAG 59.740 42.308 0.00 0.00 0.00 4.24
3301 3360 6.156949 ACTTATTTTGAGATGGAGGTAGCAGA 59.843 38.462 0.00 0.00 0.00 4.26
3302 3361 4.908601 TTTTGAGATGGAGGTAGCAGAA 57.091 40.909 0.00 0.00 0.00 3.02
3303 3362 4.908601 TTTGAGATGGAGGTAGCAGAAA 57.091 40.909 0.00 0.00 0.00 2.52
3304 3363 5.441718 TTTGAGATGGAGGTAGCAGAAAT 57.558 39.130 0.00 0.00 0.00 2.17
3305 3364 5.441718 TTGAGATGGAGGTAGCAGAAATT 57.558 39.130 0.00 0.00 0.00 1.82
3306 3365 5.441718 TGAGATGGAGGTAGCAGAAATTT 57.558 39.130 0.00 0.00 0.00 1.82
3307 3366 6.560003 TGAGATGGAGGTAGCAGAAATTTA 57.440 37.500 0.00 0.00 0.00 1.40
3308 3367 6.349300 TGAGATGGAGGTAGCAGAAATTTAC 58.651 40.000 0.00 0.00 0.00 2.01
3309 3368 6.156949 TGAGATGGAGGTAGCAGAAATTTACT 59.843 38.462 0.00 0.00 0.00 2.24
3310 3369 6.352516 AGATGGAGGTAGCAGAAATTTACTG 58.647 40.000 11.18 11.18 38.27 2.74
3324 3383 7.945033 GAAATTTACTGCAATTTCACAGGAA 57.055 32.000 14.05 0.42 46.17 3.36
3325 3384 7.713764 AAATTTACTGCAATTTCACAGGAAC 57.286 32.000 0.00 0.00 36.46 3.62
3326 3385 5.843673 TTTACTGCAATTTCACAGGAACA 57.156 34.783 5.22 0.00 36.46 3.18
3327 3386 6.403866 TTTACTGCAATTTCACAGGAACAT 57.596 33.333 5.22 0.00 36.46 2.71
3328 3387 4.247267 ACTGCAATTTCACAGGAACATG 57.753 40.909 0.00 0.00 38.25 3.21
3329 3388 3.890756 ACTGCAATTTCACAGGAACATGA 59.109 39.130 0.00 0.00 38.25 3.07
3330 3389 4.341806 ACTGCAATTTCACAGGAACATGAA 59.658 37.500 0.00 0.00 38.25 2.57
3331 3390 4.619973 TGCAATTTCACAGGAACATGAAC 58.380 39.130 0.00 0.00 35.84 3.18
3332 3391 3.989817 GCAATTTCACAGGAACATGAACC 59.010 43.478 0.00 1.92 35.84 3.62
3333 3392 4.501229 GCAATTTCACAGGAACATGAACCA 60.501 41.667 0.00 0.00 35.84 3.67
3334 3393 5.599732 CAATTTCACAGGAACATGAACCAA 58.400 37.500 0.00 0.00 35.84 3.67
3335 3394 6.225318 CAATTTCACAGGAACATGAACCAAT 58.775 36.000 0.00 0.00 35.84 3.16
3336 3395 5.867903 TTTCACAGGAACATGAACCAATT 57.132 34.783 0.00 0.00 35.84 2.32
3337 3396 5.867903 TTCACAGGAACATGAACCAATTT 57.132 34.783 0.00 0.00 32.09 1.82
3338 3397 5.867903 TCACAGGAACATGAACCAATTTT 57.132 34.783 0.00 0.00 0.00 1.82
3339 3398 5.841810 TCACAGGAACATGAACCAATTTTC 58.158 37.500 0.00 0.00 0.00 2.29
3340 3399 5.362143 TCACAGGAACATGAACCAATTTTCA 59.638 36.000 0.00 0.00 39.79 2.69
3341 3400 6.047870 CACAGGAACATGAACCAATTTTCAA 58.952 36.000 0.00 0.00 38.95 2.69
3342 3401 6.201425 CACAGGAACATGAACCAATTTTCAAG 59.799 38.462 0.00 0.00 38.95 3.02
3343 3402 5.697633 CAGGAACATGAACCAATTTTCAAGG 59.302 40.000 0.00 0.00 38.95 3.61
3344 3403 5.602145 AGGAACATGAACCAATTTTCAAGGA 59.398 36.000 0.00 0.00 38.95 3.36
3345 3404 6.099557 AGGAACATGAACCAATTTTCAAGGAA 59.900 34.615 0.00 0.00 38.95 3.36
3346 3405 6.765512 GGAACATGAACCAATTTTCAAGGAAA 59.234 34.615 0.00 0.00 38.95 3.13
3347 3406 7.041848 GGAACATGAACCAATTTTCAAGGAAAG 60.042 37.037 0.00 0.00 38.95 2.62
3348 3407 7.123355 ACATGAACCAATTTTCAAGGAAAGA 57.877 32.000 0.00 0.00 38.95 2.52
3349 3408 6.986231 ACATGAACCAATTTTCAAGGAAAGAC 59.014 34.615 0.00 0.00 38.95 3.01
3350 3409 6.537453 TGAACCAATTTTCAAGGAAAGACA 57.463 33.333 0.00 0.00 32.93 3.41
3351 3410 7.123355 TGAACCAATTTTCAAGGAAAGACAT 57.877 32.000 0.00 0.00 32.93 3.06
3352 3411 7.563906 TGAACCAATTTTCAAGGAAAGACATT 58.436 30.769 0.00 0.00 32.93 2.71
3353 3412 7.495279 TGAACCAATTTTCAAGGAAAGACATTG 59.505 33.333 7.26 7.26 40.96 2.82
3354 3413 6.290605 ACCAATTTTCAAGGAAAGACATTGG 58.709 36.000 21.04 21.04 44.48 3.16
3355 3414 6.099557 ACCAATTTTCAAGGAAAGACATTGGA 59.900 34.615 25.53 1.18 43.18 3.53
3356 3415 6.647895 CCAATTTTCAAGGAAAGACATTGGAG 59.352 38.462 19.42 3.79 43.18 3.86
3357 3416 7.436118 CAATTTTCAAGGAAAGACATTGGAGA 58.564 34.615 0.00 0.00 40.17 3.71
3358 3417 7.601705 ATTTTCAAGGAAAGACATTGGAGAA 57.398 32.000 0.00 0.00 40.17 2.87
3359 3418 7.416964 TTTTCAAGGAAAGACATTGGAGAAA 57.583 32.000 0.00 0.00 40.17 2.52
3360 3419 7.416964 TTTCAAGGAAAGACATTGGAGAAAA 57.583 32.000 0.00 0.00 40.17 2.29
3361 3420 7.416964 TTCAAGGAAAGACATTGGAGAAAAA 57.583 32.000 0.00 0.00 40.17 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 0.985490 ATCCTCCTTCCCTGCTCCAC 60.985 60.000 0.00 0.00 0.00 4.02
127 128 3.435105 AGCAAGCAACGAAAATGACAA 57.565 38.095 0.00 0.00 0.00 3.18
138 139 4.362279 TGAGATCAAACAAAGCAAGCAAC 58.638 39.130 0.00 0.00 0.00 4.17
172 173 0.920664 GCACTGACGGCAAACAAAAC 59.079 50.000 0.00 0.00 0.00 2.43
183 184 1.065401 TCAAAAAGGCAAGCACTGACG 59.935 47.619 0.00 0.00 38.56 4.35
184 185 2.869233 TCAAAAAGGCAAGCACTGAC 57.131 45.000 0.00 0.00 0.00 3.51
185 186 3.005050 CAGATCAAAAAGGCAAGCACTGA 59.995 43.478 0.00 0.00 0.00 3.41
198 199 3.243168 GCACAACTGACAGCAGATCAAAA 60.243 43.478 1.25 0.00 45.17 2.44
208 209 3.623060 ACAACAGTAAGCACAACTGACAG 59.377 43.478 16.95 0.00 45.89 3.51
209 210 3.373748 CACAACAGTAAGCACAACTGACA 59.626 43.478 16.95 0.00 45.89 3.58
223 224 2.156917 CCACATGATCAGCACAACAGT 58.843 47.619 0.00 0.00 0.00 3.55
224 225 2.095415 CACCACATGATCAGCACAACAG 60.095 50.000 0.00 0.00 0.00 3.16
247 248 3.772025 CCCATTTAAATGTGGTGGCCTTA 59.228 43.478 23.24 0.00 34.60 2.69
249 250 2.187100 CCCATTTAAATGTGGTGGCCT 58.813 47.619 23.24 0.00 34.60 5.19
263 264 3.159213 TGTGTTCTGCTCATCCCATTT 57.841 42.857 0.00 0.00 0.00 2.32
270 271 1.265095 CAGCGTTTGTGTTCTGCTCAT 59.735 47.619 0.00 0.00 32.66 2.90
290 291 0.591170 TCGGCTGTTTAGTTGCAAGC 59.409 50.000 0.00 0.00 0.00 4.01
291 292 3.347958 TTTCGGCTGTTTAGTTGCAAG 57.652 42.857 0.00 0.00 0.00 4.01
299 300 4.484236 CAGATGCAAATTTCGGCTGTTTA 58.516 39.130 0.00 0.00 0.00 2.01
305 306 1.133790 AGAGCAGATGCAAATTTCGGC 59.866 47.619 7.68 2.41 45.16 5.54
307 308 3.423571 GTGAGAGCAGATGCAAATTTCG 58.576 45.455 7.68 0.00 45.16 3.46
311 312 1.284198 AGGGTGAGAGCAGATGCAAAT 59.716 47.619 7.68 0.00 45.16 2.32
325 326 3.607741 TGACGTTTTGTGTTTAGGGTGA 58.392 40.909 0.00 0.00 0.00 4.02
330 331 5.629849 TGTTTGGTTGACGTTTTGTGTTTAG 59.370 36.000 0.00 0.00 0.00 1.85
334 335 3.004944 ACTGTTTGGTTGACGTTTTGTGT 59.995 39.130 0.00 0.00 0.00 3.72
344 346 4.657039 ACTTACCCTCTACTGTTTGGTTGA 59.343 41.667 0.00 0.00 0.00 3.18
363 365 1.667236 CATCGCATGAAGGGCACTTA 58.333 50.000 0.00 0.00 36.97 2.24
364 366 1.660560 GCATCGCATGAAGGGCACTT 61.661 55.000 0.00 0.00 40.34 3.16
365 367 2.117156 GCATCGCATGAAGGGCACT 61.117 57.895 0.00 0.00 0.00 4.40
366 368 2.332362 CTGCATCGCATGAAGGGCAC 62.332 60.000 0.00 0.00 38.13 5.01
367 369 2.045143 TGCATCGCATGAAGGGCA 60.045 55.556 0.00 0.00 31.71 5.36
420 425 3.624861 CCAGTCTGGTTCTTCATATGCAC 59.375 47.826 11.09 0.00 31.35 4.57
438 443 4.019792 TGCATGTACATCTTCAACCAGT 57.980 40.909 5.07 0.00 0.00 4.00
443 448 4.142337 CCTGCATTGCATGTACATCTTCAA 60.142 41.667 12.53 10.70 38.13 2.69
446 451 3.359033 ACCTGCATTGCATGTACATCTT 58.641 40.909 16.58 0.00 35.79 2.40
452 457 3.348647 ACAGTACCTGCATTGCATGTA 57.651 42.857 18.98 18.98 38.29 2.29
461 466 1.067846 CAGTTCGCTACAGTACCTGCA 60.068 52.381 0.00 0.00 34.37 4.41
464 469 1.254026 TGCAGTTCGCTACAGTACCT 58.746 50.000 0.00 0.00 43.06 3.08
475 480 2.286772 GGGTGTGTTTAGTTGCAGTTCG 60.287 50.000 0.00 0.00 0.00 3.95
476 481 2.286772 CGGGTGTGTTTAGTTGCAGTTC 60.287 50.000 0.00 0.00 0.00 3.01
493 498 2.747446 GTTCATAGCATTCACAACGGGT 59.253 45.455 0.00 0.00 0.00 5.28
497 502 6.529125 CCTTCATTGTTCATAGCATTCACAAC 59.471 38.462 0.00 0.00 30.40 3.32
498 503 6.433716 TCCTTCATTGTTCATAGCATTCACAA 59.566 34.615 0.00 0.00 0.00 3.33
499 504 5.945191 TCCTTCATTGTTCATAGCATTCACA 59.055 36.000 0.00 0.00 0.00 3.58
500 505 6.441093 TCCTTCATTGTTCATAGCATTCAC 57.559 37.500 0.00 0.00 0.00 3.18
501 506 6.095860 CCTTCCTTCATTGTTCATAGCATTCA 59.904 38.462 0.00 0.00 0.00 2.57
502 507 6.319658 TCCTTCCTTCATTGTTCATAGCATTC 59.680 38.462 0.00 0.00 0.00 2.67
503 508 6.189859 TCCTTCCTTCATTGTTCATAGCATT 58.810 36.000 0.00 0.00 0.00 3.56
504 509 5.759059 TCCTTCCTTCATTGTTCATAGCAT 58.241 37.500 0.00 0.00 0.00 3.79
505 510 5.178096 TCCTTCCTTCATTGTTCATAGCA 57.822 39.130 0.00 0.00 0.00 3.49
506 511 5.415701 TGTTCCTTCCTTCATTGTTCATAGC 59.584 40.000 0.00 0.00 0.00 2.97
507 512 7.452880 TTGTTCCTTCCTTCATTGTTCATAG 57.547 36.000 0.00 0.00 0.00 2.23
508 513 7.523709 GCTTTGTTCCTTCCTTCATTGTTCATA 60.524 37.037 0.00 0.00 0.00 2.15
509 514 6.729690 TTTGTTCCTTCCTTCATTGTTCAT 57.270 33.333 0.00 0.00 0.00 2.57
510 515 5.451798 GCTTTGTTCCTTCCTTCATTGTTCA 60.452 40.000 0.00 0.00 0.00 3.18
511 516 4.984785 GCTTTGTTCCTTCCTTCATTGTTC 59.015 41.667 0.00 0.00 0.00 3.18
512 517 4.202253 GGCTTTGTTCCTTCCTTCATTGTT 60.202 41.667 0.00 0.00 0.00 2.83
513 518 3.321968 GGCTTTGTTCCTTCCTTCATTGT 59.678 43.478 0.00 0.00 0.00 2.71
514 519 3.321682 TGGCTTTGTTCCTTCCTTCATTG 59.678 43.478 0.00 0.00 0.00 2.82
515 520 3.575805 TGGCTTTGTTCCTTCCTTCATT 58.424 40.909 0.00 0.00 0.00 2.57
516 521 3.243359 TGGCTTTGTTCCTTCCTTCAT 57.757 42.857 0.00 0.00 0.00 2.57
517 522 2.746279 TGGCTTTGTTCCTTCCTTCA 57.254 45.000 0.00 0.00 0.00 3.02
518 523 2.959030 ACTTGGCTTTGTTCCTTCCTTC 59.041 45.455 0.00 0.00 0.00 3.46
519 524 2.695147 CACTTGGCTTTGTTCCTTCCTT 59.305 45.455 0.00 0.00 0.00 3.36
520 525 2.091885 TCACTTGGCTTTGTTCCTTCCT 60.092 45.455 0.00 0.00 0.00 3.36
521 526 2.306847 TCACTTGGCTTTGTTCCTTCC 58.693 47.619 0.00 0.00 0.00 3.46
522 527 3.305608 CCATCACTTGGCTTTGTTCCTTC 60.306 47.826 0.00 0.00 39.09 3.46
523 528 2.629617 CCATCACTTGGCTTTGTTCCTT 59.370 45.455 0.00 0.00 39.09 3.36
524 529 2.242043 CCATCACTTGGCTTTGTTCCT 58.758 47.619 0.00 0.00 39.09 3.36
525 530 1.273327 CCCATCACTTGGCTTTGTTCC 59.727 52.381 0.00 0.00 44.97 3.62
526 531 1.337167 GCCCATCACTTGGCTTTGTTC 60.337 52.381 0.00 0.00 44.97 3.18
527 532 0.681175 GCCCATCACTTGGCTTTGTT 59.319 50.000 0.00 0.00 44.97 2.83
528 533 2.354902 GCCCATCACTTGGCTTTGT 58.645 52.632 0.00 0.00 44.97 2.83
534 539 4.422073 TCATACTTAGCCCATCACTTGG 57.578 45.455 0.00 0.00 46.00 3.61
535 540 5.674525 TCTTCATACTTAGCCCATCACTTG 58.325 41.667 0.00 0.00 0.00 3.16
536 541 5.163258 CCTCTTCATACTTAGCCCATCACTT 60.163 44.000 0.00 0.00 0.00 3.16
537 542 4.346418 CCTCTTCATACTTAGCCCATCACT 59.654 45.833 0.00 0.00 0.00 3.41
538 543 4.636249 CCTCTTCATACTTAGCCCATCAC 58.364 47.826 0.00 0.00 0.00 3.06
539 544 3.071602 GCCTCTTCATACTTAGCCCATCA 59.928 47.826 0.00 0.00 0.00 3.07
540 545 3.326297 AGCCTCTTCATACTTAGCCCATC 59.674 47.826 0.00 0.00 0.00 3.51
541 546 3.321950 AGCCTCTTCATACTTAGCCCAT 58.678 45.455 0.00 0.00 0.00 4.00
542 547 2.764269 AGCCTCTTCATACTTAGCCCA 58.236 47.619 0.00 0.00 0.00 5.36
543 548 4.957684 TTAGCCTCTTCATACTTAGCCC 57.042 45.455 0.00 0.00 0.00 5.19
544 549 5.237561 GCTTTTAGCCTCTTCATACTTAGCC 59.762 44.000 0.00 0.00 34.48 3.93
545 550 6.293713 GCTTTTAGCCTCTTCATACTTAGC 57.706 41.667 0.00 0.00 34.48 3.09
559 564 3.568430 AGTTACACAACAGGCTTTTAGCC 59.432 43.478 9.69 9.69 46.00 3.93
560 565 4.830826 AGTTACACAACAGGCTTTTAGC 57.169 40.909 0.00 0.00 37.55 3.09
561 566 6.038271 ACTGAAGTTACACAACAGGCTTTTAG 59.962 38.462 0.00 0.00 37.10 1.85
562 567 5.883673 ACTGAAGTTACACAACAGGCTTTTA 59.116 36.000 0.00 0.00 37.10 1.52
563 568 4.705023 ACTGAAGTTACACAACAGGCTTTT 59.295 37.500 0.00 0.00 37.10 2.27
564 569 4.270008 ACTGAAGTTACACAACAGGCTTT 58.730 39.130 0.00 0.00 37.10 3.51
565 570 3.877508 GACTGAAGTTACACAACAGGCTT 59.122 43.478 0.00 0.00 37.10 4.35
566 571 3.134804 AGACTGAAGTTACACAACAGGCT 59.865 43.478 0.00 0.00 37.18 4.58
567 572 3.467803 AGACTGAAGTTACACAACAGGC 58.532 45.455 0.00 0.00 37.10 4.85
568 573 4.686554 GCTAGACTGAAGTTACACAACAGG 59.313 45.833 0.00 0.00 37.10 4.00
569 574 5.533482 AGCTAGACTGAAGTTACACAACAG 58.467 41.667 0.00 0.00 37.10 3.16
570 575 5.531122 AGCTAGACTGAAGTTACACAACA 57.469 39.130 0.00 0.00 37.10 3.33
584 589 5.753721 ATTTTTCTGACCTCAGCTAGACT 57.246 39.130 0.00 0.00 43.46 3.24
585 590 7.907214 TTAATTTTTCTGACCTCAGCTAGAC 57.093 36.000 0.00 0.00 43.46 2.59
586 591 8.918202 TTTTAATTTTTCTGACCTCAGCTAGA 57.082 30.769 0.00 0.00 43.46 2.43
587 592 9.003658 TCTTTTAATTTTTCTGACCTCAGCTAG 57.996 33.333 0.00 0.00 43.46 3.42
588 593 8.918202 TCTTTTAATTTTTCTGACCTCAGCTA 57.082 30.769 0.00 0.00 43.46 3.32
589 594 7.721399 TCTCTTTTAATTTTTCTGACCTCAGCT 59.279 33.333 0.00 0.00 43.46 4.24
590 595 7.875971 TCTCTTTTAATTTTTCTGACCTCAGC 58.124 34.615 0.00 0.00 43.46 4.26
601 606 8.974408 GCCACGTTACATTCTCTTTTAATTTTT 58.026 29.630 0.00 0.00 0.00 1.94
602 607 8.357402 AGCCACGTTACATTCTCTTTTAATTTT 58.643 29.630 0.00 0.00 0.00 1.82
603 608 7.807907 CAGCCACGTTACATTCTCTTTTAATTT 59.192 33.333 0.00 0.00 0.00 1.82
604 609 7.305474 CAGCCACGTTACATTCTCTTTTAATT 58.695 34.615 0.00 0.00 0.00 1.40
605 610 6.622896 GCAGCCACGTTACATTCTCTTTTAAT 60.623 38.462 0.00 0.00 0.00 1.40
606 611 5.334569 GCAGCCACGTTACATTCTCTTTTAA 60.335 40.000 0.00 0.00 0.00 1.52
607 612 4.153475 GCAGCCACGTTACATTCTCTTTTA 59.847 41.667 0.00 0.00 0.00 1.52
608 613 3.058224 GCAGCCACGTTACATTCTCTTTT 60.058 43.478 0.00 0.00 0.00 2.27
609 614 2.484264 GCAGCCACGTTACATTCTCTTT 59.516 45.455 0.00 0.00 0.00 2.52
610 615 2.076863 GCAGCCACGTTACATTCTCTT 58.923 47.619 0.00 0.00 0.00 2.85
611 616 1.001974 TGCAGCCACGTTACATTCTCT 59.998 47.619 0.00 0.00 0.00 3.10
612 617 1.438651 TGCAGCCACGTTACATTCTC 58.561 50.000 0.00 0.00 0.00 2.87
613 618 2.113860 ATGCAGCCACGTTACATTCT 57.886 45.000 0.00 0.00 0.00 2.40
614 619 5.236478 ACTTATATGCAGCCACGTTACATTC 59.764 40.000 0.00 0.00 0.00 2.67
615 620 5.123227 ACTTATATGCAGCCACGTTACATT 58.877 37.500 0.00 0.00 0.00 2.71
616 621 4.703897 ACTTATATGCAGCCACGTTACAT 58.296 39.130 0.00 0.00 0.00 2.29
617 622 4.131649 ACTTATATGCAGCCACGTTACA 57.868 40.909 0.00 0.00 0.00 2.41
618 623 4.260620 CCAACTTATATGCAGCCACGTTAC 60.261 45.833 0.00 0.00 0.00 2.50
619 624 3.874543 CCAACTTATATGCAGCCACGTTA 59.125 43.478 0.00 0.00 0.00 3.18
620 625 2.682856 CCAACTTATATGCAGCCACGTT 59.317 45.455 0.00 0.00 0.00 3.99
621 626 2.288666 CCAACTTATATGCAGCCACGT 58.711 47.619 0.00 0.00 0.00 4.49
622 627 1.002468 GCCAACTTATATGCAGCCACG 60.002 52.381 0.00 0.00 0.00 4.94
623 628 2.033801 CAGCCAACTTATATGCAGCCAC 59.966 50.000 0.00 0.00 0.00 5.01
624 629 2.300433 CAGCCAACTTATATGCAGCCA 58.700 47.619 0.00 0.00 0.00 4.75
625 630 1.000938 GCAGCCAACTTATATGCAGCC 60.001 52.381 0.00 0.00 36.88 4.85
626 631 1.000938 GGCAGCCAACTTATATGCAGC 60.001 52.381 6.55 0.00 38.63 5.25
627 632 1.610522 GGGCAGCCAACTTATATGCAG 59.389 52.381 15.19 0.00 38.63 4.41
628 633 1.064091 TGGGCAGCCAACTTATATGCA 60.064 47.619 15.19 0.00 38.63 3.96
629 634 1.691196 TGGGCAGCCAACTTATATGC 58.309 50.000 15.19 0.00 36.16 3.14
630 635 2.029649 GCATGGGCAGCCAACTTATATG 60.030 50.000 15.19 6.79 40.72 1.78
631 636 2.158415 AGCATGGGCAGCCAACTTATAT 60.158 45.455 15.19 0.00 44.61 0.86
632 637 1.215173 AGCATGGGCAGCCAACTTATA 59.785 47.619 15.19 0.00 44.61 0.98
633 638 0.032813 AGCATGGGCAGCCAACTTAT 60.033 50.000 15.19 0.00 44.61 1.73
634 639 0.623194 TAGCATGGGCAGCCAACTTA 59.377 50.000 15.19 0.00 44.61 2.24
635 640 0.251742 TTAGCATGGGCAGCCAACTT 60.252 50.000 15.19 0.00 44.61 2.66
636 641 0.251742 TTTAGCATGGGCAGCCAACT 60.252 50.000 15.19 6.87 44.61 3.16
637 642 0.607620 TTTTAGCATGGGCAGCCAAC 59.392 50.000 15.19 0.00 44.61 3.77
638 643 1.570803 ATTTTAGCATGGGCAGCCAA 58.429 45.000 15.19 0.58 44.61 4.52
639 644 1.570803 AATTTTAGCATGGGCAGCCA 58.429 45.000 15.19 0.00 44.61 4.75
640 645 2.696989 AAATTTTAGCATGGGCAGCC 57.303 45.000 1.26 1.26 44.61 4.85
641 646 4.060205 CCATAAATTTTAGCATGGGCAGC 58.940 43.478 9.11 0.00 44.61 5.25
669 674 2.288152 GGCACATTCTTCGGCAGAAAAA 60.288 45.455 0.00 0.00 45.06 1.94
670 675 1.269448 GGCACATTCTTCGGCAGAAAA 59.731 47.619 0.00 0.00 45.06 2.29
671 676 0.881118 GGCACATTCTTCGGCAGAAA 59.119 50.000 0.00 0.00 45.06 2.52
672 677 0.250684 TGGCACATTCTTCGGCAGAA 60.251 50.000 0.00 0.00 46.01 3.02
673 678 0.955428 GTGGCACATTCTTCGGCAGA 60.955 55.000 13.86 0.00 44.52 4.26
674 679 1.503542 GTGGCACATTCTTCGGCAG 59.496 57.895 13.86 0.00 44.52 4.85
675 680 1.971167 GGTGGCACATTCTTCGGCA 60.971 57.895 20.82 0.00 44.52 5.69
676 681 1.523154 TTGGTGGCACATTCTTCGGC 61.523 55.000 20.82 0.00 44.52 5.54
677 682 0.958091 TTTGGTGGCACATTCTTCGG 59.042 50.000 20.82 0.00 44.52 4.30
678 683 4.637483 ATATTTGGTGGCACATTCTTCG 57.363 40.909 20.82 0.00 44.52 3.79
679 684 6.699575 AGTATATTTGGTGGCACATTCTTC 57.300 37.500 20.82 0.77 44.52 2.87
680 685 6.663093 TGAAGTATATTTGGTGGCACATTCTT 59.337 34.615 20.82 12.40 44.52 2.52
681 686 6.186957 TGAAGTATATTTGGTGGCACATTCT 58.813 36.000 20.82 4.18 44.52 2.40
682 687 6.449635 TGAAGTATATTTGGTGGCACATTC 57.550 37.500 20.82 2.39 44.52 2.67
683 688 6.380846 ACATGAAGTATATTTGGTGGCACATT 59.619 34.615 20.82 3.09 44.52 2.71
684 689 5.893255 ACATGAAGTATATTTGGTGGCACAT 59.107 36.000 20.82 7.08 44.52 3.21
685 690 5.260424 ACATGAAGTATATTTGGTGGCACA 58.740 37.500 20.82 2.61 0.00 4.57
686 691 5.835113 ACATGAAGTATATTTGGTGGCAC 57.165 39.130 9.70 9.70 0.00 5.01
687 692 7.777440 TGATTACATGAAGTATATTTGGTGGCA 59.223 33.333 0.00 0.00 31.53 4.92
688 693 8.165239 TGATTACATGAAGTATATTTGGTGGC 57.835 34.615 0.00 0.00 31.53 5.01
710 715 9.684448 CATAGTACGAGTACAATCATTCTTGAT 57.316 33.333 14.83 0.00 37.68 2.57
711 716 8.899771 TCATAGTACGAGTACAATCATTCTTGA 58.100 33.333 14.83 3.03 38.48 3.02
712 717 9.175060 CTCATAGTACGAGTACAATCATTCTTG 57.825 37.037 14.83 0.00 38.48 3.02
713 718 8.904834 ACTCATAGTACGAGTACAATCATTCTT 58.095 33.333 14.83 0.00 41.91 2.52
714 719 8.453238 ACTCATAGTACGAGTACAATCATTCT 57.547 34.615 14.83 0.00 41.91 2.40
718 723 9.946165 CATTTACTCATAGTACGAGTACAATCA 57.054 33.333 14.83 0.00 43.80 2.57
721 726 8.127327 GCTCATTTACTCATAGTACGAGTACAA 58.873 37.037 14.83 5.00 43.80 2.41
722 727 7.498239 AGCTCATTTACTCATAGTACGAGTACA 59.502 37.037 14.83 0.38 43.80 2.90
723 728 7.863666 AGCTCATTTACTCATAGTACGAGTAC 58.136 38.462 5.61 5.32 43.80 2.73
724 729 7.932491 AGAGCTCATTTACTCATAGTACGAGTA 59.068 37.037 17.77 1.99 41.91 2.59
725 730 6.768861 AGAGCTCATTTACTCATAGTACGAGT 59.231 38.462 17.77 4.07 45.53 4.18
726 731 7.172532 AGAGAGCTCATTTACTCATAGTACGAG 59.827 40.741 17.77 0.00 35.28 4.18
727 732 6.993308 AGAGAGCTCATTTACTCATAGTACGA 59.007 38.462 17.77 0.00 35.28 3.43
728 733 7.197071 AGAGAGCTCATTTACTCATAGTACG 57.803 40.000 17.77 0.00 35.28 3.67
729 734 9.810545 AAAAGAGAGCTCATTTACTCATAGTAC 57.189 33.333 17.77 0.00 35.28 2.73
731 736 9.160496 CAAAAAGAGAGCTCATTTACTCATAGT 57.840 33.333 17.77 0.00 35.28 2.12
732 737 8.121708 GCAAAAAGAGAGCTCATTTACTCATAG 58.878 37.037 17.77 4.15 35.28 2.23
733 738 7.066284 GGCAAAAAGAGAGCTCATTTACTCATA 59.934 37.037 17.77 0.00 35.28 2.15
734 739 6.127786 GGCAAAAAGAGAGCTCATTTACTCAT 60.128 38.462 17.77 0.00 35.28 2.90
735 740 5.182001 GGCAAAAAGAGAGCTCATTTACTCA 59.818 40.000 17.77 0.00 35.28 3.41
736 741 5.392487 GGGCAAAAAGAGAGCTCATTTACTC 60.392 44.000 17.77 3.16 31.29 2.59
737 742 4.460731 GGGCAAAAAGAGAGCTCATTTACT 59.539 41.667 17.77 4.17 31.29 2.24
738 743 4.460731 AGGGCAAAAAGAGAGCTCATTTAC 59.539 41.667 17.77 9.52 31.29 2.01
739 744 4.666512 AGGGCAAAAAGAGAGCTCATTTA 58.333 39.130 17.77 0.00 31.29 1.40
740 745 3.504375 AGGGCAAAAAGAGAGCTCATTT 58.496 40.909 17.77 13.41 32.64 2.32
741 746 3.166560 AGGGCAAAAAGAGAGCTCATT 57.833 42.857 17.77 7.47 0.00 2.57
742 747 2.895242 AGGGCAAAAAGAGAGCTCAT 57.105 45.000 17.77 0.20 0.00 2.90
743 748 2.664402 AAGGGCAAAAAGAGAGCTCA 57.336 45.000 17.77 0.00 0.00 4.26
744 749 5.453567 TTTTAAGGGCAAAAAGAGAGCTC 57.546 39.130 5.27 5.27 0.00 4.09
745 750 5.869649 TTTTTAAGGGCAAAAAGAGAGCT 57.130 34.783 0.00 0.00 33.57 4.09
783 788 9.823647 GAGAACCTGTATTTTTCTATGAGATCA 57.176 33.333 0.00 0.00 29.54 2.92
784 789 9.267084 GGAGAACCTGTATTTTTCTATGAGATC 57.733 37.037 0.00 0.00 29.54 2.75
785 790 8.214364 GGGAGAACCTGTATTTTTCTATGAGAT 58.786 37.037 0.00 0.00 35.85 2.75
786 791 7.565680 GGGAGAACCTGTATTTTTCTATGAGA 58.434 38.462 0.00 0.00 35.85 3.27
787 792 6.480320 CGGGAGAACCTGTATTTTTCTATGAG 59.520 42.308 0.00 0.00 37.74 2.90
788 793 6.155565 TCGGGAGAACCTGTATTTTTCTATGA 59.844 38.462 0.00 0.00 42.77 2.15
789 794 6.346096 TCGGGAGAACCTGTATTTTTCTATG 58.654 40.000 0.00 0.00 42.77 2.23
790 795 6.555463 TCGGGAGAACCTGTATTTTTCTAT 57.445 37.500 0.00 0.00 42.77 1.98
791 796 6.363167 TTCGGGAGAACCTGTATTTTTCTA 57.637 37.500 0.00 0.00 45.39 2.10
792 797 4.903045 TCGGGAGAACCTGTATTTTTCT 57.097 40.909 0.00 0.00 42.77 2.52
837 842 2.280592 AGTCTCGGGCGCGTTTTT 60.281 55.556 23.19 5.20 0.00 1.94
838 843 3.041940 CAGTCTCGGGCGCGTTTT 61.042 61.111 23.19 4.84 0.00 2.43
862 867 1.134901 CTCGTCGTCCTCCTCGTTG 59.865 63.158 0.00 0.00 0.00 4.10
962 967 3.656045 TCGACGACGCTGCTGTGA 61.656 61.111 11.42 0.00 39.58 3.58
1077 1082 2.045926 AGGCAATGGCAGACCGTC 60.046 61.111 10.05 0.00 43.71 4.79
1241 1246 3.810896 GACATGGCCGGCGAAACC 61.811 66.667 22.54 6.51 0.00 3.27
1247 1252 2.903855 CCATCAGACATGGCCGGC 60.904 66.667 21.18 21.18 31.75 6.13
1378 1383 6.723298 TTCCTCCATCTTTTTACTGCAAAA 57.277 33.333 0.00 0.00 34.26 2.44
1383 1388 5.067023 GGCTGATTCCTCCATCTTTTTACTG 59.933 44.000 0.00 0.00 0.00 2.74
1387 1392 4.051661 TGGCTGATTCCTCCATCTTTTT 57.948 40.909 0.00 0.00 0.00 1.94
1397 1402 3.054361 AGACCGTAATTTGGCTGATTCCT 60.054 43.478 0.00 0.00 0.00 3.36
1398 1403 3.279434 AGACCGTAATTTGGCTGATTCC 58.721 45.455 0.00 0.00 0.00 3.01
1399 1404 4.965119 AAGACCGTAATTTGGCTGATTC 57.035 40.909 0.00 0.00 0.00 2.52
1400 1405 5.722021 AAAAGACCGTAATTTGGCTGATT 57.278 34.783 0.00 0.00 0.00 2.57
1411 1418 5.824097 AGTTTAAGAGCCAAAAAGACCGTAA 59.176 36.000 0.00 0.00 0.00 3.18
1464 1473 6.015519 AGGAAAATTGACCGAATTGTTCATCA 60.016 34.615 0.00 0.00 34.30 3.07
1470 1479 5.538118 GGAAAGGAAAATTGACCGAATTGT 58.462 37.500 0.00 0.00 34.30 2.71
1481 1490 1.000843 GCCTGCACGGAAAGGAAAATT 59.999 47.619 6.40 0.00 35.40 1.82
1590 1599 1.458927 CCGGGAAAGAACCCCAACT 59.541 57.895 0.00 0.00 46.62 3.16
1591 1600 2.273179 GCCGGGAAAGAACCCCAAC 61.273 63.158 2.18 0.00 46.62 3.77
1592 1601 2.087857 ATGCCGGGAAAGAACCCCAA 62.088 55.000 0.00 0.00 46.62 4.12
1593 1602 2.493273 GATGCCGGGAAAGAACCCCA 62.493 60.000 0.00 0.00 46.62 4.96
1594 1603 1.753078 GATGCCGGGAAAGAACCCC 60.753 63.158 0.00 0.00 46.62 4.95
1595 1604 1.753078 GGATGCCGGGAAAGAACCC 60.753 63.158 0.00 0.00 45.92 4.11
1596 1605 0.395724 ATGGATGCCGGGAAAGAACC 60.396 55.000 0.00 0.00 0.00 3.62
1597 1606 1.025041 GATGGATGCCGGGAAAGAAC 58.975 55.000 0.00 0.00 0.00 3.01
1598 1607 0.918983 AGATGGATGCCGGGAAAGAA 59.081 50.000 0.00 0.00 0.00 2.52
1600 1609 0.181114 TGAGATGGATGCCGGGAAAG 59.819 55.000 0.00 0.00 0.00 2.62
1601 1610 0.107214 GTGAGATGGATGCCGGGAAA 60.107 55.000 0.00 0.00 0.00 3.13
1602 1611 1.271127 TGTGAGATGGATGCCGGGAA 61.271 55.000 0.00 0.00 0.00 3.97
1603 1612 1.688884 TGTGAGATGGATGCCGGGA 60.689 57.895 2.18 0.00 0.00 5.14
1604 1613 1.227764 CTGTGAGATGGATGCCGGG 60.228 63.158 2.18 0.00 0.00 5.73
1606 1615 0.531532 GGACTGTGAGATGGATGCCG 60.532 60.000 0.00 0.00 0.00 5.69
1607 1616 0.179034 GGGACTGTGAGATGGATGCC 60.179 60.000 0.00 0.00 0.00 4.40
1608 1617 0.543277 TGGGACTGTGAGATGGATGC 59.457 55.000 0.00 0.00 0.00 3.91
1610 1619 4.141390 GGTATTTGGGACTGTGAGATGGAT 60.141 45.833 0.00 0.00 0.00 3.41
1611 1620 3.199946 GGTATTTGGGACTGTGAGATGGA 59.800 47.826 0.00 0.00 0.00 3.41
1614 1623 4.927267 TTGGTATTTGGGACTGTGAGAT 57.073 40.909 0.00 0.00 0.00 2.75
1615 1624 4.324254 GGATTGGTATTTGGGACTGTGAGA 60.324 45.833 0.00 0.00 0.00 3.27
1616 1625 3.947834 GGATTGGTATTTGGGACTGTGAG 59.052 47.826 0.00 0.00 0.00 3.51
1617 1626 3.332187 TGGATTGGTATTTGGGACTGTGA 59.668 43.478 0.00 0.00 0.00 3.58
1618 1627 3.443681 GTGGATTGGTATTTGGGACTGTG 59.556 47.826 0.00 0.00 0.00 3.66
1619 1628 3.563479 GGTGGATTGGTATTTGGGACTGT 60.563 47.826 0.00 0.00 0.00 3.55
1620 1629 3.023832 GGTGGATTGGTATTTGGGACTG 58.976 50.000 0.00 0.00 0.00 3.51
1621 1630 2.652348 TGGTGGATTGGTATTTGGGACT 59.348 45.455 0.00 0.00 0.00 3.85
1622 1631 3.094484 TGGTGGATTGGTATTTGGGAC 57.906 47.619 0.00 0.00 0.00 4.46
1623 1632 4.386986 GGTATGGTGGATTGGTATTTGGGA 60.387 45.833 0.00 0.00 0.00 4.37
1624 1633 3.895041 GGTATGGTGGATTGGTATTTGGG 59.105 47.826 0.00 0.00 0.00 4.12
1625 1634 3.895041 GGGTATGGTGGATTGGTATTTGG 59.105 47.826 0.00 0.00 0.00 3.28
1626 1635 4.340950 GTGGGTATGGTGGATTGGTATTTG 59.659 45.833 0.00 0.00 0.00 2.32
1627 1636 4.542697 GTGGGTATGGTGGATTGGTATTT 58.457 43.478 0.00 0.00 0.00 1.40
1628 1637 3.117284 GGTGGGTATGGTGGATTGGTATT 60.117 47.826 0.00 0.00 0.00 1.89
1629 1638 2.445525 GGTGGGTATGGTGGATTGGTAT 59.554 50.000 0.00 0.00 0.00 2.73
1630 1639 1.847737 GGTGGGTATGGTGGATTGGTA 59.152 52.381 0.00 0.00 0.00 3.25
1649 1658 2.091994 AGCTCATGAATTTGGAGAGGGG 60.092 50.000 0.00 0.00 0.00 4.79
1650 1659 3.294038 AGCTCATGAATTTGGAGAGGG 57.706 47.619 0.00 0.00 0.00 4.30
1657 1666 5.106277 TGCAGAGAAGAAGCTCATGAATTTG 60.106 40.000 0.00 0.00 37.37 2.32
1669 1678 5.236282 TGACTGAAGATTGCAGAGAAGAAG 58.764 41.667 0.00 0.00 36.86 2.85
1670 1679 5.219343 TGACTGAAGATTGCAGAGAAGAA 57.781 39.130 0.00 0.00 36.86 2.52
1671 1680 4.818642 CTGACTGAAGATTGCAGAGAAGA 58.181 43.478 0.00 0.00 36.86 2.87
1682 1691 0.881796 TCACGACGCTGACTGAAGAT 59.118 50.000 0.00 0.00 0.00 2.40
1776 1785 3.001406 GTGGGAGTGCCGGGTACT 61.001 66.667 18.15 18.15 33.83 2.73
1781 1790 1.530655 AAAAAGGTGGGAGTGCCGG 60.531 57.895 0.00 0.00 33.83 6.13
1796 1805 7.066887 TGCAGTTCACTGAAGATTCTACAAAAA 59.933 33.333 11.29 0.00 46.59 1.94
1797 1806 6.542005 TGCAGTTCACTGAAGATTCTACAAAA 59.458 34.615 11.29 0.00 46.59 2.44
1798 1807 6.017934 GTGCAGTTCACTGAAGATTCTACAAA 60.018 38.462 11.29 0.00 46.59 2.83
1799 1808 5.466728 GTGCAGTTCACTGAAGATTCTACAA 59.533 40.000 11.29 0.00 46.59 2.41
1800 1809 4.991056 GTGCAGTTCACTGAAGATTCTACA 59.009 41.667 11.29 0.00 46.59 2.74
1801 1810 4.090642 CGTGCAGTTCACTGAAGATTCTAC 59.909 45.833 11.29 0.00 46.59 2.59
1802 1811 4.022329 TCGTGCAGTTCACTGAAGATTCTA 60.022 41.667 11.29 0.00 46.59 2.10
1828 1837 6.209589 ACGACCATGCATACTTGTAGATAGAT 59.790 38.462 0.00 0.00 0.00 1.98
1851 1860 1.135257 ACGAGCAGGAATTCAGAGACG 60.135 52.381 7.93 9.44 0.00 4.18
1891 1900 2.616376 CTCGGTGGAGATACAGAGAGTG 59.384 54.545 0.00 0.00 42.92 3.51
1960 1969 1.941734 GGAGTCGATGAGCTTCGCG 60.942 63.158 0.00 0.00 38.97 5.87
2068 2077 0.872388 GGTTGTACCAGCCGTTGAAG 59.128 55.000 0.00 0.00 38.42 3.02
2126 2135 0.250467 TTGGTTGACCTGAGCAGAGC 60.250 55.000 1.34 0.00 36.82 4.09
2169 2178 2.470257 CGAGACACCAACGTAGACAAAC 59.530 50.000 0.00 0.00 0.00 2.93
2176 2185 4.639824 GTGCGAGACACCAACGTA 57.360 55.556 0.00 0.00 44.02 3.57
2187 2196 0.096454 TCGTCGATGTACTGTGCGAG 59.904 55.000 4.21 0.00 33.00 5.03
2210 2219 3.323403 GCTTGTATATGGCTGACTCCTCT 59.677 47.826 0.00 0.00 0.00 3.69
2293 2302 2.533916 AGAGATCAGTCAGTGCTCCAA 58.466 47.619 0.00 0.00 0.00 3.53
2331 2340 2.205074 ACGACTTGACAGACTGCAAAG 58.795 47.619 13.54 13.54 0.00 2.77
2479 2488 8.770828 TCTTTTCTTTCTCGTAAAATTCGACAT 58.229 29.630 0.00 0.00 33.71 3.06
2490 2499 6.285224 TGGTGTTCATCTTTTCTTTCTCGTA 58.715 36.000 0.00 0.00 0.00 3.43
2491 2500 5.123227 TGGTGTTCATCTTTTCTTTCTCGT 58.877 37.500 0.00 0.00 0.00 4.18
2494 2503 7.785033 ACATTTGGTGTTCATCTTTTCTTTCT 58.215 30.769 0.00 0.00 38.01 2.52
2515 2524 2.808543 GCCACAGAAGTCTTCGAACATT 59.191 45.455 6.94 0.00 34.02 2.71
2532 2541 4.704833 TCAGCCAAGCTCCGCCAC 62.705 66.667 1.53 0.00 36.40 5.01
2538 2547 4.613929 CTGTCCTCAGCCAAGCTC 57.386 61.111 0.00 0.00 36.40 4.09
2551 2560 0.100682 CTCATGCTGCCAATGCTGTC 59.899 55.000 0.00 0.00 38.57 3.51
2603 2612 5.767816 ACCGAGTTCTAGCAATTTTGTTT 57.232 34.783 0.00 0.00 0.00 2.83
2606 2615 8.122952 CCTTATAACCGAGTTCTAGCAATTTTG 58.877 37.037 0.00 0.00 0.00 2.44
2702 2711 9.642327 CAGATTATGAGAGAAAGGTAGATGATG 57.358 37.037 0.00 0.00 0.00 3.07
2703 2712 8.814931 CCAGATTATGAGAGAAAGGTAGATGAT 58.185 37.037 0.00 0.00 0.00 2.45
2734 2793 2.950309 TGACTATACGAGAGACCCAAGC 59.050 50.000 0.00 0.00 0.00 4.01
2804 2863 3.632145 GGAGTGAGGTGCAAAGAAGAAAA 59.368 43.478 0.00 0.00 0.00 2.29
2807 2866 1.768275 TGGAGTGAGGTGCAAAGAAGA 59.232 47.619 0.00 0.00 0.00 2.87
2808 2867 2.260844 TGGAGTGAGGTGCAAAGAAG 57.739 50.000 0.00 0.00 0.00 2.85
3016 3075 0.912487 TTACCTCCCGCCCATGAGTT 60.912 55.000 0.00 0.00 0.00 3.01
3022 3081 2.529643 TTGGTTACCTCCCGCCCA 60.530 61.111 2.07 0.00 0.00 5.36
3046 3105 1.539388 AGAACGTCAGCTCAGACTCAG 59.461 52.381 3.02 0.00 36.38 3.35
3050 3109 3.639538 TGTTTAGAACGTCAGCTCAGAC 58.360 45.455 0.00 0.00 35.19 3.51
3153 3212 6.767902 TCTTGTATTAGAAGACATGGGATTGC 59.232 38.462 0.00 0.00 29.27 3.56
3154 3213 8.147642 GTCTTGTATTAGAAGACATGGGATTG 57.852 38.462 22.27 0.00 45.84 2.67
3251 3310 9.090692 GTGTCTCAAGTTTAGTACAACTTTGTA 57.909 33.333 8.25 0.00 43.17 2.41
3252 3311 7.822822 AGTGTCTCAAGTTTAGTACAACTTTGT 59.177 33.333 8.25 0.00 43.17 2.83
3253 3312 8.197988 AGTGTCTCAAGTTTAGTACAACTTTG 57.802 34.615 8.25 5.77 43.17 2.77
3254 3313 8.788325 AAGTGTCTCAAGTTTAGTACAACTTT 57.212 30.769 8.25 0.00 43.17 2.66
3262 3321 9.832445 TCTCAAAATAAGTGTCTCAAGTTTAGT 57.168 29.630 0.00 0.00 0.00 2.24
3265 3324 8.571336 CCATCTCAAAATAAGTGTCTCAAGTTT 58.429 33.333 0.00 0.00 0.00 2.66
3266 3325 7.939039 TCCATCTCAAAATAAGTGTCTCAAGTT 59.061 33.333 0.00 0.00 0.00 2.66
3267 3326 7.453393 TCCATCTCAAAATAAGTGTCTCAAGT 58.547 34.615 0.00 0.00 0.00 3.16
3268 3327 7.065563 CCTCCATCTCAAAATAAGTGTCTCAAG 59.934 40.741 0.00 0.00 0.00 3.02
3269 3328 6.881065 CCTCCATCTCAAAATAAGTGTCTCAA 59.119 38.462 0.00 0.00 0.00 3.02
3270 3329 6.013379 ACCTCCATCTCAAAATAAGTGTCTCA 60.013 38.462 0.00 0.00 0.00 3.27
3271 3330 6.410540 ACCTCCATCTCAAAATAAGTGTCTC 58.589 40.000 0.00 0.00 0.00 3.36
3272 3331 6.380079 ACCTCCATCTCAAAATAAGTGTCT 57.620 37.500 0.00 0.00 0.00 3.41
3273 3332 6.258947 GCTACCTCCATCTCAAAATAAGTGTC 59.741 42.308 0.00 0.00 0.00 3.67
3274 3333 6.116126 GCTACCTCCATCTCAAAATAAGTGT 58.884 40.000 0.00 0.00 0.00 3.55
3275 3334 6.115446 TGCTACCTCCATCTCAAAATAAGTG 58.885 40.000 0.00 0.00 0.00 3.16
3276 3335 6.156949 TCTGCTACCTCCATCTCAAAATAAGT 59.843 38.462 0.00 0.00 0.00 2.24
3277 3336 6.586344 TCTGCTACCTCCATCTCAAAATAAG 58.414 40.000 0.00 0.00 0.00 1.73
3278 3337 6.560003 TCTGCTACCTCCATCTCAAAATAA 57.440 37.500 0.00 0.00 0.00 1.40
3279 3338 6.560003 TTCTGCTACCTCCATCTCAAAATA 57.440 37.500 0.00 0.00 0.00 1.40
3280 3339 5.441718 TTCTGCTACCTCCATCTCAAAAT 57.558 39.130 0.00 0.00 0.00 1.82
3281 3340 4.908601 TTCTGCTACCTCCATCTCAAAA 57.091 40.909 0.00 0.00 0.00 2.44
3282 3341 4.908601 TTTCTGCTACCTCCATCTCAAA 57.091 40.909 0.00 0.00 0.00 2.69
3283 3342 5.441718 AATTTCTGCTACCTCCATCTCAA 57.558 39.130 0.00 0.00 0.00 3.02
3284 3343 5.441718 AAATTTCTGCTACCTCCATCTCA 57.558 39.130 0.00 0.00 0.00 3.27
3285 3344 6.481644 CAGTAAATTTCTGCTACCTCCATCTC 59.518 42.308 0.00 0.00 0.00 2.75
3286 3345 6.352516 CAGTAAATTTCTGCTACCTCCATCT 58.647 40.000 0.00 0.00 0.00 2.90
3287 3346 6.610741 CAGTAAATTTCTGCTACCTCCATC 57.389 41.667 0.00 0.00 0.00 3.51
3301 3360 7.271511 TGTTCCTGTGAAATTGCAGTAAATTT 58.728 30.769 0.00 0.00 41.34 1.82
3302 3361 6.815089 TGTTCCTGTGAAATTGCAGTAAATT 58.185 32.000 0.00 0.00 30.79 1.82
3303 3362 6.403866 TGTTCCTGTGAAATTGCAGTAAAT 57.596 33.333 0.00 0.00 30.79 1.40
3304 3363 5.843673 TGTTCCTGTGAAATTGCAGTAAA 57.156 34.783 0.00 0.00 30.79 2.01
3305 3364 5.534278 TCATGTTCCTGTGAAATTGCAGTAA 59.466 36.000 0.00 0.00 30.79 2.24
3306 3365 5.069318 TCATGTTCCTGTGAAATTGCAGTA 58.931 37.500 0.00 0.00 30.79 2.74
3307 3366 3.890756 TCATGTTCCTGTGAAATTGCAGT 59.109 39.130 0.00 0.00 30.79 4.40
3308 3367 4.508461 TCATGTTCCTGTGAAATTGCAG 57.492 40.909 0.00 0.00 30.79 4.41
3309 3368 4.501229 GGTTCATGTTCCTGTGAAATTGCA 60.501 41.667 0.00 0.00 36.23 4.08
3310 3369 3.989817 GGTTCATGTTCCTGTGAAATTGC 59.010 43.478 0.00 0.00 36.23 3.56
3311 3370 5.199024 TGGTTCATGTTCCTGTGAAATTG 57.801 39.130 9.49 0.00 36.23 2.32
3312 3371 5.867903 TTGGTTCATGTTCCTGTGAAATT 57.132 34.783 9.49 0.00 36.23 1.82
3313 3372 6.423776 AATTGGTTCATGTTCCTGTGAAAT 57.576 33.333 9.49 0.49 36.23 2.17
3314 3373 5.867903 AATTGGTTCATGTTCCTGTGAAA 57.132 34.783 9.49 0.00 36.23 2.69
3315 3374 5.867903 AAATTGGTTCATGTTCCTGTGAA 57.132 34.783 9.49 0.00 32.31 3.18
3316 3375 5.362143 TGAAAATTGGTTCATGTTCCTGTGA 59.638 36.000 9.49 0.00 32.56 3.58
3317 3376 5.599732 TGAAAATTGGTTCATGTTCCTGTG 58.400 37.500 9.49 0.00 32.56 3.66
3318 3377 5.867903 TGAAAATTGGTTCATGTTCCTGT 57.132 34.783 9.49 0.00 32.56 4.00
3319 3378 5.697633 CCTTGAAAATTGGTTCATGTTCCTG 59.302 40.000 9.49 0.00 37.36 3.86
3320 3379 5.602145 TCCTTGAAAATTGGTTCATGTTCCT 59.398 36.000 9.49 0.00 37.36 3.36
3321 3380 5.852827 TCCTTGAAAATTGGTTCATGTTCC 58.147 37.500 0.00 0.00 37.36 3.62
3322 3381 7.710475 TCTTTCCTTGAAAATTGGTTCATGTTC 59.290 33.333 0.00 0.00 37.36 3.18
3323 3382 7.495606 GTCTTTCCTTGAAAATTGGTTCATGTT 59.504 33.333 0.00 0.00 37.36 2.71
3324 3383 6.986231 GTCTTTCCTTGAAAATTGGTTCATGT 59.014 34.615 0.00 0.00 37.36 3.21
3325 3384 6.985645 TGTCTTTCCTTGAAAATTGGTTCATG 59.014 34.615 0.00 0.00 37.36 3.07
3326 3385 7.123355 TGTCTTTCCTTGAAAATTGGTTCAT 57.877 32.000 0.00 0.00 37.36 2.57
3327 3386 6.537453 TGTCTTTCCTTGAAAATTGGTTCA 57.463 33.333 0.00 0.00 35.72 3.18
3328 3387 7.041848 CCAATGTCTTTCCTTGAAAATTGGTTC 60.042 37.037 16.34 0.00 39.75 3.62
3329 3388 6.767423 CCAATGTCTTTCCTTGAAAATTGGTT 59.233 34.615 16.34 0.00 39.75 3.67
3330 3389 6.099557 TCCAATGTCTTTCCTTGAAAATTGGT 59.900 34.615 20.29 0.00 42.25 3.67
3331 3390 6.523840 TCCAATGTCTTTCCTTGAAAATTGG 58.476 36.000 17.52 17.52 42.59 3.16
3332 3391 7.436118 TCTCCAATGTCTTTCCTTGAAAATTG 58.564 34.615 5.88 5.88 32.05 2.32
3333 3392 7.601705 TCTCCAATGTCTTTCCTTGAAAATT 57.398 32.000 0.00 0.00 30.84 1.82
3334 3393 7.601705 TTCTCCAATGTCTTTCCTTGAAAAT 57.398 32.000 0.00 0.00 30.84 1.82
3335 3394 7.416964 TTTCTCCAATGTCTTTCCTTGAAAA 57.583 32.000 0.00 0.00 30.84 2.29
3336 3395 7.416964 TTTTCTCCAATGTCTTTCCTTGAAA 57.583 32.000 0.00 0.00 0.00 2.69
3337 3396 7.416964 TTTTTCTCCAATGTCTTTCCTTGAA 57.583 32.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.