Multiple sequence alignment - TraesCS7A01G248300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G248300 chr7A 100.000 4478 0 0 1 4478 229603812 229608289 0.000000e+00 8270.0
1 TraesCS7A01G248300 chr7A 100.000 1991 0 0 4629 6619 229608440 229610430 0.000000e+00 3677.0
2 TraesCS7A01G248300 chr7A 91.667 48 2 2 465 512 226752093 226752048 1.540000e-06 65.8
3 TraesCS7A01G248300 chr7D 92.028 2810 104 51 235 2974 216836227 216838986 0.000000e+00 3838.0
4 TraesCS7A01G248300 chr7D 96.731 1866 45 10 4767 6619 216840851 216842713 0.000000e+00 3094.0
5 TraesCS7A01G248300 chr7D 93.565 1523 70 17 2974 4478 216839042 216840554 0.000000e+00 2244.0
6 TraesCS7A01G248300 chr7D 88.261 230 26 1 11 240 216835968 216836196 2.350000e-69 274.0
7 TraesCS7A01G248300 chr7D 94.231 52 3 0 4717 4768 409808278 409808227 5.500000e-11 80.5
8 TraesCS7A01G248300 chr7D 86.885 61 6 2 455 514 214347922 214347863 4.280000e-07 67.6
9 TraesCS7A01G248300 chr7B 91.706 2520 104 32 235 2719 183878060 183875611 0.000000e+00 3398.0
10 TraesCS7A01G248300 chr7B 92.975 1509 76 16 2974 4478 183875255 183873773 0.000000e+00 2172.0
11 TraesCS7A01G248300 chr7B 95.833 1224 29 10 4771 5982 183873227 183872014 0.000000e+00 1958.0
12 TraesCS7A01G248300 chr7B 93.607 610 23 7 6015 6619 183872017 183871419 0.000000e+00 896.0
13 TraesCS7A01G248300 chr7B 85.253 217 24 5 2772 2988 183875505 183875297 4.020000e-52 217.0
14 TraesCS7A01G248300 chr7B 92.857 56 2 1 4713 4768 518916713 518916766 5.500000e-11 80.5
15 TraesCS7A01G248300 chr7B 89.831 59 4 2 465 522 186820928 186820985 2.560000e-09 75.0
16 TraesCS7A01G248300 chr7B 94.444 36 1 1 2714 2748 183875533 183875498 3.000000e-03 54.7
17 TraesCS7A01G248300 chr5A 96.000 50 2 0 4719 4768 708410854 708410805 1.530000e-11 82.4
18 TraesCS7A01G248300 chr6B 95.918 49 2 0 4720 4768 408760636 408760588 5.500000e-11 80.5
19 TraesCS7A01G248300 chr5B 90.323 62 4 2 4707 4768 684240813 684240872 5.500000e-11 80.5
20 TraesCS7A01G248300 chr1A 95.918 49 2 0 4721 4769 132282850 132282802 5.500000e-11 80.5
21 TraesCS7A01G248300 chr4B 90.000 60 4 2 4710 4768 351875112 351875054 7.120000e-10 76.8
22 TraesCS7A01G248300 chr3B 90.000 60 4 2 4710 4768 8855206 8855148 7.120000e-10 76.8
23 TraesCS7A01G248300 chr3B 89.655 58 6 0 4711 4768 672737192 672737249 2.560000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G248300 chr7A 229603812 229610430 6618 False 5973.500000 8270 100.00000 1 6619 2 chr7A.!!$F1 6618
1 TraesCS7A01G248300 chr7D 216835968 216842713 6745 False 2362.500000 3838 92.64625 11 6619 4 chr7D.!!$F1 6608
2 TraesCS7A01G248300 chr7B 183871419 183878060 6641 True 1449.283333 3398 92.30300 235 6619 6 chr7B.!!$R1 6384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.242825 GTCACCGACATGAACCGAGA 59.757 55.000 0.00 0.0 32.09 4.04 F
1544 1600 0.310854 GTACGGGCATTATGCTTGGC 59.689 55.000 17.13 0.0 44.28 4.52 F
2624 2717 0.603065 GCGGGCAGAATCCAAAAAGT 59.397 50.000 0.00 0.0 0.00 2.66 F
3710 3964 0.039527 ACGGAGCGCCATTGTTTTTC 60.040 50.000 7.44 0.0 0.00 2.29 F
4038 4294 1.130561 GCACTTGTCGAAATGGTAGGC 59.869 52.381 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2178 0.605589 AACGGTAGACTTTGCAGGGC 60.606 55.0 0.00 0.00 0.00 5.19 R
3239 3492 0.943673 CATGTGCACGGACAAAGACA 59.056 50.0 13.13 0.00 0.00 3.41 R
4027 4283 0.938008 GTAGCGCTGCCTACCATTTC 59.062 55.0 22.90 0.00 33.24 2.17 R
5309 5844 0.535102 CGAACACCCTGTCCTGCTTT 60.535 55.0 0.00 0.00 0.00 3.51 R
5985 6521 0.386476 CATTGAACCGATGCATGGGG 59.614 55.0 28.73 19.86 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.099419 GGACCCTTTGTCATTTTTGAGTGT 59.901 41.667 0.00 0.00 46.38 3.55
27 28 5.009854 ACCCTTTGTCATTTTTGAGTGTG 57.990 39.130 0.00 0.00 0.00 3.82
31 32 6.239120 CCCTTTGTCATTTTTGAGTGTGAGAT 60.239 38.462 0.00 0.00 0.00 2.75
36 37 5.916883 GTCATTTTTGAGTGTGAGATGTTGG 59.083 40.000 0.00 0.00 0.00 3.77
38 39 1.511850 TTGAGTGTGAGATGTTGGCG 58.488 50.000 0.00 0.00 0.00 5.69
39 40 0.950555 TGAGTGTGAGATGTTGGCGC 60.951 55.000 0.00 0.00 0.00 6.53
40 41 1.639298 GAGTGTGAGATGTTGGCGCC 61.639 60.000 22.73 22.73 0.00 6.53
42 43 4.166011 GTGAGATGTTGGCGCCGC 62.166 66.667 23.90 17.91 0.00 6.53
46 47 1.366111 GAGATGTTGGCGCCGCTTAA 61.366 55.000 23.90 7.51 0.00 1.85
59 60 3.603770 CGCCGCTTAATGACTTTCTTTTG 59.396 43.478 0.00 0.00 0.00 2.44
78 79 6.320164 TCTTTTGTATAAGCACCAACACACTT 59.680 34.615 0.00 0.00 0.00 3.16
139 140 4.369182 AGTCCAAATGGTCGATTCGATAC 58.631 43.478 12.54 9.15 38.42 2.24
149 150 3.000322 GTCGATTCGATACAAAGCTGTGG 60.000 47.826 12.54 0.00 38.42 4.17
198 199 2.410730 AGATAAAAACGACAACCGAGCG 59.589 45.455 0.00 0.00 41.76 5.03
220 221 2.050714 GCGAGAACGTCACCGACA 60.051 61.111 7.46 0.00 41.98 4.35
230 231 0.242825 GTCACCGACATGAACCGAGA 59.757 55.000 0.00 0.00 32.09 4.04
244 281 6.677781 TGAACCGAGAATGAAAACATATCC 57.322 37.500 0.00 0.00 0.00 2.59
289 326 5.059161 CAGATAATCACACAGGGTGTATGG 58.941 45.833 1.78 0.00 45.65 2.74
311 348 0.750850 TCCCGTATAGGCAAGCACTC 59.249 55.000 0.00 0.00 39.21 3.51
375 412 3.181531 GCCGAAAATTTTGCCATTTCTCG 60.182 43.478 8.47 2.21 32.28 4.04
394 431 1.079256 TCTACTCCCTGGCAGCAGT 59.921 57.895 18.11 18.11 0.00 4.40
412 449 7.119262 GGCAGCAGTTAGTATCTAAAAAGAACA 59.881 37.037 0.00 0.00 0.00 3.18
537 577 4.377022 CGTTTCCATTTTGACTACTCCACG 60.377 45.833 0.00 0.00 0.00 4.94
539 579 3.921677 TCCATTTTGACTACTCCACGTC 58.078 45.455 0.00 0.00 0.00 4.34
540 580 3.576982 TCCATTTTGACTACTCCACGTCT 59.423 43.478 0.00 0.00 0.00 4.18
541 581 3.927142 CCATTTTGACTACTCCACGTCTC 59.073 47.826 0.00 0.00 0.00 3.36
542 582 3.655276 TTTTGACTACTCCACGTCTCC 57.345 47.619 0.00 0.00 0.00 3.71
543 583 2.281539 TTGACTACTCCACGTCTCCA 57.718 50.000 0.00 0.00 0.00 3.86
544 584 1.531423 TGACTACTCCACGTCTCCAC 58.469 55.000 0.00 0.00 0.00 4.02
545 585 1.202842 TGACTACTCCACGTCTCCACA 60.203 52.381 0.00 0.00 0.00 4.17
546 586 2.093106 GACTACTCCACGTCTCCACAT 58.907 52.381 0.00 0.00 0.00 3.21
547 587 2.492484 GACTACTCCACGTCTCCACATT 59.508 50.000 0.00 0.00 0.00 2.71
548 588 2.492484 ACTACTCCACGTCTCCACATTC 59.508 50.000 0.00 0.00 0.00 2.67
549 589 0.608640 ACTCCACGTCTCCACATTCC 59.391 55.000 0.00 0.00 0.00 3.01
602 644 2.074353 CACAAAACACGCGCGGATG 61.074 57.895 35.22 25.87 0.00 3.51
667 713 2.951458 GGCAGGGGTTTCGAAACG 59.049 61.111 29.23 18.84 39.77 3.60
731 777 3.659786 TCACGGCCCGAGAAATATATTG 58.340 45.455 11.71 0.00 0.00 1.90
811 857 3.086600 CCACCTCCTCCTGCTCCC 61.087 72.222 0.00 0.00 0.00 4.30
812 858 2.040278 CACCTCCTCCTGCTCCCT 59.960 66.667 0.00 0.00 0.00 4.20
813 859 2.063378 CACCTCCTCCTGCTCCCTC 61.063 68.421 0.00 0.00 0.00 4.30
814 860 2.445654 CCTCCTCCTGCTCCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
819 865 2.955246 TCCTGCTCCCTCCCTCCT 60.955 66.667 0.00 0.00 0.00 3.69
837 883 4.230733 CCTCCTTCCTTCCTTCCCTTTATT 59.769 45.833 0.00 0.00 0.00 1.40
838 884 5.281769 CCTCCTTCCTTCCTTCCCTTTATTT 60.282 44.000 0.00 0.00 0.00 1.40
839 885 6.227624 TCCTTCCTTCCTTCCCTTTATTTT 57.772 37.500 0.00 0.00 0.00 1.82
840 886 6.253758 TCCTTCCTTCCTTCCCTTTATTTTC 58.746 40.000 0.00 0.00 0.00 2.29
985 1041 1.413227 CGATAAACCCCTCCTCCTCCT 60.413 57.143 0.00 0.00 0.00 3.69
986 1042 2.331166 GATAAACCCCTCCTCCTCCTC 58.669 57.143 0.00 0.00 0.00 3.71
989 1045 3.756783 CCCCTCCTCCTCCTCCGT 61.757 72.222 0.00 0.00 0.00 4.69
990 1046 2.123640 CCCTCCTCCTCCTCCGTC 60.124 72.222 0.00 0.00 0.00 4.79
991 1047 2.517402 CCTCCTCCTCCTCCGTCG 60.517 72.222 0.00 0.00 0.00 5.12
992 1048 2.517402 CTCCTCCTCCTCCGTCGG 60.517 72.222 4.39 4.39 0.00 4.79
993 1049 3.336568 TCCTCCTCCTCCGTCGGT 61.337 66.667 11.88 0.00 0.00 4.69
994 1050 2.829458 CCTCCTCCTCCGTCGGTC 60.829 72.222 11.88 0.00 0.00 4.79
995 1051 2.829458 CTCCTCCTCCGTCGGTCC 60.829 72.222 11.88 0.00 0.00 4.46
1537 1593 6.398234 TTGCAAAATATGTACGGGCATTAT 57.602 33.333 0.00 0.00 0.00 1.28
1540 1596 5.564651 GCAAAATATGTACGGGCATTATGCT 60.565 40.000 17.13 0.00 44.28 3.79
1541 1597 6.446318 CAAAATATGTACGGGCATTATGCTT 58.554 36.000 17.13 4.63 44.28 3.91
1544 1600 0.310854 GTACGGGCATTATGCTTGGC 59.689 55.000 17.13 0.00 44.28 4.52
1571 1632 4.686191 AACCCATGAAAATTTGTCAGCA 57.314 36.364 0.00 0.00 0.00 4.41
1656 1719 1.019278 CGGTTCCATTGACCCACTCG 61.019 60.000 0.00 0.00 33.49 4.18
1716 1785 2.257676 GACACCGTCGTCTGGGTC 59.742 66.667 0.00 0.00 33.23 4.46
1878 1949 3.428045 GGTCAAACACTACCGTATACGCT 60.428 47.826 19.86 9.09 38.18 5.07
2006 2086 1.001974 ACTGCTTGGCATCACTAACGA 59.998 47.619 0.00 0.00 38.13 3.85
2062 2142 7.233757 ACCTTCTCATCCATTAGTGACCTATAC 59.766 40.741 0.00 0.00 0.00 1.47
2077 2157 3.195661 CCTATACGCTTGAGTTCCCAAC 58.804 50.000 0.00 0.00 0.00 3.77
2096 2178 1.299541 CACCGTGCCAAAGCTATAGG 58.700 55.000 1.04 0.00 40.80 2.57
2116 2198 1.338389 GCCCTGCAAAGTCTACCGTTA 60.338 52.381 0.00 0.00 0.00 3.18
2120 2202 3.251571 CTGCAAAGTCTACCGTTACCTC 58.748 50.000 0.00 0.00 0.00 3.85
2176 2260 0.975556 TATGAGGGCAGGCGAAGACA 60.976 55.000 0.00 0.00 39.87 3.41
2432 2520 6.064717 GGTAGGCCAACTTTGATATCTCAAT 58.935 40.000 5.01 0.00 36.65 2.57
2601 2694 1.923356 CACCCCATTTTGGTACAGCT 58.077 50.000 0.00 0.00 42.39 4.24
2624 2717 0.603065 GCGGGCAGAATCCAAAAAGT 59.397 50.000 0.00 0.00 0.00 2.66
2636 2729 9.801873 CAGAATCCAAAAAGTCTCTAAAACAAA 57.198 29.630 0.00 0.00 0.00 2.83
2688 2785 1.269831 GCTCCTAAGTGGCACCTATCG 60.270 57.143 15.27 0.00 35.26 2.92
2762 2943 7.561021 TTAAACTAACACACATGCTCTTCAA 57.439 32.000 0.00 0.00 0.00 2.69
2778 2959 9.860898 ATGCTCTTCAAATTTATGGAAACTAAC 57.139 29.630 0.00 0.00 0.00 2.34
2846 3027 7.823745 ATTAAGAAGAAACAACCAGACACAT 57.176 32.000 0.00 0.00 0.00 3.21
2923 3120 1.275573 GGTCTGACACCCAGTTCTACC 59.724 57.143 10.38 0.00 43.38 3.18
2949 3146 4.517285 ACTCGTCATGGCTTATTGAACAT 58.483 39.130 0.00 0.00 0.00 2.71
3239 3492 5.905331 TCAGTATTGAGTCCATATGGTCCTT 59.095 40.000 21.28 5.78 36.34 3.36
3277 3530 7.809331 TGCACATGAGTTAATTGAGTTTTCATC 59.191 33.333 0.00 0.00 32.27 2.92
3404 3657 7.111247 TCAAGACAATGGGCAAATATTTAGG 57.889 36.000 0.00 0.00 0.00 2.69
3505 3759 4.035441 GCTTTGTACGTTAGTTTTGGGTCA 59.965 41.667 0.00 0.00 0.00 4.02
3643 3897 8.603242 TTTCAAACTGACAAGGACTCTATTAC 57.397 34.615 0.00 0.00 0.00 1.89
3710 3964 0.039527 ACGGAGCGCCATTGTTTTTC 60.040 50.000 7.44 0.00 0.00 2.29
3788 4042 3.799035 CTTTTGTCGAAACCGAGACATG 58.201 45.455 0.00 0.00 45.40 3.21
3897 4152 1.470805 GCAAAAACGGAAACTGGCTGT 60.471 47.619 0.00 0.00 0.00 4.40
3914 4169 2.747989 GCTGTAAACCAGAAACCTAGGC 59.252 50.000 9.30 0.00 44.49 3.93
3952 4207 5.062528 ACCGATACCGTCCAAAAAGTTTTA 58.937 37.500 0.24 0.00 0.00 1.52
3992 4247 9.515226 AAAAGACTAAGTAATGTCAAATGGCTA 57.485 29.630 0.00 0.00 35.81 3.93
3994 4249 7.620880 AGACTAAGTAATGTCAAATGGCTACA 58.379 34.615 0.00 0.00 35.81 2.74
4027 4283 2.738846 AGTCATAAGCAAGCACTTGTCG 59.261 45.455 11.77 0.00 42.31 4.35
4030 4286 3.812609 TCATAAGCAAGCACTTGTCGAAA 59.187 39.130 11.77 0.00 42.31 3.46
4038 4294 1.130561 GCACTTGTCGAAATGGTAGGC 59.869 52.381 0.00 0.00 0.00 3.93
4171 4428 3.467119 CGAACGCACGACCTTCGG 61.467 66.667 0.00 0.00 45.59 4.30
4189 4446 1.596464 CGGTAGGTAAGTAAGCGAGCG 60.596 57.143 0.00 0.00 43.59 5.03
4215 4472 6.306987 ACCAATTCACCAGAAAGTACTTCAT 58.693 36.000 8.95 0.00 37.29 2.57
4658 4928 8.859517 AAAAGGAAATTGATTGTTTGCAAATG 57.140 26.923 16.21 0.00 38.21 2.32
4659 4929 6.004408 AGGAAATTGATTGTTTGCAAATGC 57.996 33.333 16.21 3.86 38.21 3.56
4660 4930 5.048573 AGGAAATTGATTGTTTGCAAATGCC 60.049 36.000 16.21 4.57 41.18 4.40
4672 4998 6.183360 TGTTTGCAAATGCCAAAATGATGAAA 60.183 30.769 16.21 0.00 41.18 2.69
4726 5052 9.905713 TGCAAATTTTAGAAGATATGTACTCCT 57.094 29.630 0.00 0.00 0.00 3.69
4730 5056 9.765795 AATTTTAGAAGATATGTACTCCTTCCG 57.234 33.333 0.00 0.00 36.57 4.30
4731 5057 7.893124 TTTAGAAGATATGTACTCCTTCCGT 57.107 36.000 0.00 0.00 36.57 4.69
4732 5058 7.507733 TTAGAAGATATGTACTCCTTCCGTC 57.492 40.000 0.00 0.00 36.57 4.79
4733 5059 4.828387 AGAAGATATGTACTCCTTCCGTCC 59.172 45.833 0.00 0.00 36.57 4.79
4734 5060 3.498334 AGATATGTACTCCTTCCGTCCC 58.502 50.000 0.00 0.00 0.00 4.46
4735 5061 2.832643 TATGTACTCCTTCCGTCCCA 57.167 50.000 0.00 0.00 0.00 4.37
4736 5062 2.176247 ATGTACTCCTTCCGTCCCAT 57.824 50.000 0.00 0.00 0.00 4.00
4737 5063 2.832643 TGTACTCCTTCCGTCCCATA 57.167 50.000 0.00 0.00 0.00 2.74
4738 5064 3.104519 TGTACTCCTTCCGTCCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
4739 5065 3.649843 TGTACTCCTTCCGTCCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
4740 5066 4.806892 TGTACTCCTTCCGTCCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
4741 5067 5.399991 TGTACTCCTTCCGTCCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
4742 5068 6.554784 TGTACTCCTTCCGTCCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
4743 5069 7.011994 TGTACTCCTTCCGTCCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
4744 5070 6.607004 ACTCCTTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
4745 5071 6.320518 ACTCCTTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
4746 5072 6.785963 ACTCCTTCCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
4747 5073 7.001099 TCCTTCCGTCCCATAATATAAGAAC 57.999 40.000 0.00 0.00 0.00 3.01
4748 5074 5.867716 CCTTCCGTCCCATAATATAAGAACG 59.132 44.000 0.00 0.00 0.00 3.95
4749 5075 6.409524 TTCCGTCCCATAATATAAGAACGT 57.590 37.500 0.00 0.00 0.00 3.99
4750 5076 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4751 5077 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
4752 5078 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
4753 5079 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
4853 5377 3.990092 AGTACAGAACGCAGATGAACAA 58.010 40.909 0.00 0.00 0.00 2.83
4918 5446 2.988493 GCATGTGCACTTGTATTGTTGG 59.012 45.455 27.56 5.75 41.59 3.77
5116 5646 7.218228 TGATTTTGAATTAGCATGACACACT 57.782 32.000 0.00 0.00 0.00 3.55
5177 5708 7.678454 GCACAAACGTTGGATATATGTGATGAA 60.678 37.037 23.96 0.00 39.10 2.57
5178 5709 8.344831 CACAAACGTTGGATATATGTGATGAAT 58.655 33.333 17.82 0.00 39.10 2.57
5179 5710 8.344831 ACAAACGTTGGATATATGTGATGAATG 58.655 33.333 10.33 0.00 34.12 2.67
5441 5976 2.220586 TGAGCACACCCCCATCGAA 61.221 57.895 0.00 0.00 0.00 3.71
5444 5979 1.745489 GCACACCCCCATCGAAGAC 60.745 63.158 0.00 0.00 42.51 3.01
5695 6230 7.038659 CGTTCTGAAAAGTAGATGAGGAGAAT 58.961 38.462 0.00 0.00 0.00 2.40
5779 6314 3.407698 TGTGTTGTGCCTATTGATTCGT 58.592 40.909 0.00 0.00 0.00 3.85
5980 6516 9.730705 TCTTCTGTGTTTATCTCTGATCATTTT 57.269 29.630 0.00 0.00 0.00 1.82
5983 6519 9.159364 TCTGTGTTTATCTCTGATCATTTTGAG 57.841 33.333 0.00 0.00 0.00 3.02
5984 6520 8.272545 TGTGTTTATCTCTGATCATTTTGAGG 57.727 34.615 9.19 0.00 0.00 3.86
5985 6521 7.148188 TGTGTTTATCTCTGATCATTTTGAGGC 60.148 37.037 9.19 0.00 0.00 4.70
5986 6522 6.319658 TGTTTATCTCTGATCATTTTGAGGCC 59.680 38.462 9.19 0.00 0.00 5.19
5987 6523 3.287867 TCTCTGATCATTTTGAGGCCC 57.712 47.619 0.00 0.00 0.00 5.80
5988 6524 2.092212 TCTCTGATCATTTTGAGGCCCC 60.092 50.000 0.00 0.00 0.00 5.80
5989 6525 1.640149 TCTGATCATTTTGAGGCCCCA 59.360 47.619 0.00 0.00 0.00 4.96
5990 6526 2.245546 TCTGATCATTTTGAGGCCCCAT 59.754 45.455 0.00 0.00 0.00 4.00
6004 6546 0.386476 CCCCATGCATCGGTTCAATG 59.614 55.000 9.66 0.00 0.00 2.82
6027 6569 5.099575 GGTTCAACAGTTTGTTAACAGGTG 58.900 41.667 8.56 6.35 38.77 4.00
6045 6587 5.187772 ACAGGTGTAATTACTCTGCTGATGA 59.812 40.000 25.39 1.63 34.24 2.92
6145 6689 4.024048 AGCAAACAATTGACTACCGTTCAG 60.024 41.667 13.59 0.00 38.94 3.02
6169 6713 8.024865 CAGCATGTAGAACAAAATGAAGATGAA 58.975 33.333 0.00 0.00 0.00 2.57
6344 6891 6.238076 CGCTTTTGCTCTTTTTGTAACCATTT 60.238 34.615 0.00 0.00 44.80 2.32
6425 6972 3.057946 GGACACCTCAAAAGCAAGCTTAG 60.058 47.826 7.85 4.45 34.84 2.18
6426 6973 2.294512 ACACCTCAAAAGCAAGCTTAGC 59.705 45.455 7.85 5.67 34.84 3.09
6427 6974 2.294233 CACCTCAAAAGCAAGCTTAGCA 59.706 45.455 18.74 0.00 34.84 3.49
6474 7024 0.466922 CATCACCAGGCCAAGATCCC 60.467 60.000 5.01 0.00 0.00 3.85
6534 7084 4.335594 TCGATCTGTGTATGTGACTGTAGG 59.664 45.833 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.366477 ACTCAAAAATGACAAAGGGTCCATT 59.634 36.000 0.00 0.00 46.38 3.16
1 2 4.901250 ACTCAAAAATGACAAAGGGTCCAT 59.099 37.500 0.00 0.00 46.38 3.41
2 3 4.099266 CACTCAAAAATGACAAAGGGTCCA 59.901 41.667 0.00 0.00 46.38 4.02
3 4 4.099419 ACACTCAAAAATGACAAAGGGTCC 59.901 41.667 0.00 0.00 46.38 4.46
6 7 5.067674 TCTCACACTCAAAAATGACAAAGGG 59.932 40.000 0.00 0.00 0.00 3.95
7 8 6.135290 TCTCACACTCAAAAATGACAAAGG 57.865 37.500 0.00 0.00 0.00 3.11
8 9 7.198390 ACATCTCACACTCAAAAATGACAAAG 58.802 34.615 0.00 0.00 0.00 2.77
9 10 7.099266 ACATCTCACACTCAAAAATGACAAA 57.901 32.000 0.00 0.00 0.00 2.83
10 11 6.698008 ACATCTCACACTCAAAAATGACAA 57.302 33.333 0.00 0.00 0.00 3.18
11 12 6.459985 CCAACATCTCACACTCAAAAATGACA 60.460 38.462 0.00 0.00 0.00 3.58
12 13 5.916883 CCAACATCTCACACTCAAAAATGAC 59.083 40.000 0.00 0.00 0.00 3.06
13 14 5.507817 GCCAACATCTCACACTCAAAAATGA 60.508 40.000 0.00 0.00 0.00 2.57
14 15 4.682860 GCCAACATCTCACACTCAAAAATG 59.317 41.667 0.00 0.00 0.00 2.32
15 16 4.557296 CGCCAACATCTCACACTCAAAAAT 60.557 41.667 0.00 0.00 0.00 1.82
16 17 3.243035 CGCCAACATCTCACACTCAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
26 27 2.514510 TAAGCGGCGCCAACATCTCA 62.515 55.000 30.40 0.00 0.00 3.27
27 28 1.366111 TTAAGCGGCGCCAACATCTC 61.366 55.000 30.40 5.59 0.00 2.75
31 32 1.672682 TCATTAAGCGGCGCCAACA 60.673 52.632 30.40 10.95 0.00 3.33
36 37 0.727398 AGAAAGTCATTAAGCGGCGC 59.273 50.000 26.86 26.86 0.00 6.53
38 39 4.546570 ACAAAAGAAAGTCATTAAGCGGC 58.453 39.130 0.00 0.00 0.00 6.53
39 40 9.490663 CTTATACAAAAGAAAGTCATTAAGCGG 57.509 33.333 0.00 0.00 0.00 5.52
40 41 9.000018 GCTTATACAAAAGAAAGTCATTAAGCG 58.000 33.333 0.00 0.00 0.00 4.68
46 47 7.759489 TGGTGCTTATACAAAAGAAAGTCAT 57.241 32.000 0.00 0.00 0.00 3.06
59 60 4.783242 CACAAGTGTGTTGGTGCTTATAC 58.217 43.478 3.17 0.00 40.96 1.47
78 79 5.868257 GAAATGCATATTTCGAGACACACA 58.132 37.500 0.00 0.00 41.81 3.72
114 115 4.823157 TCGAATCGACCATTTGGACTTTA 58.177 39.130 0.00 0.00 38.94 1.85
125 126 3.186909 CAGCTTTGTATCGAATCGACCA 58.813 45.455 7.77 5.04 39.18 4.02
128 129 3.119280 TCCACAGCTTTGTATCGAATCGA 60.119 43.478 8.12 8.12 41.13 3.59
132 133 5.298276 AGTTTTTCCACAGCTTTGTATCGAA 59.702 36.000 0.00 0.00 0.00 3.71
133 134 4.819630 AGTTTTTCCACAGCTTTGTATCGA 59.180 37.500 0.00 0.00 0.00 3.59
139 140 4.493547 TGTGAAGTTTTTCCACAGCTTTG 58.506 39.130 0.00 0.00 32.09 2.77
149 150 5.175673 GGCTTGCTTGTATGTGAAGTTTTTC 59.824 40.000 0.00 0.00 0.00 2.29
198 199 2.804090 GTGACGTTCTCGCCGACC 60.804 66.667 0.00 0.00 41.18 4.79
220 221 6.828273 TGGATATGTTTTCATTCTCGGTTCAT 59.172 34.615 0.00 0.00 41.25 2.57
230 231 8.196771 ACACGCATAAATGGATATGTTTTCATT 58.803 29.630 0.00 0.00 41.25 2.57
244 281 3.546815 GGAGCTAGCAACACGCATAAATG 60.547 47.826 18.83 0.00 46.13 2.32
311 348 4.331992 CAGTAAGGATGCACTGTCTTCATG 59.668 45.833 0.00 0.00 37.87 3.07
375 412 1.261238 ACTGCTGCCAGGGAGTAGAC 61.261 60.000 29.26 4.78 43.53 2.59
537 577 3.181485 CGGTAGAAGAGGAATGTGGAGAC 60.181 52.174 0.00 0.00 0.00 3.36
539 579 3.024547 TCGGTAGAAGAGGAATGTGGAG 58.975 50.000 0.00 0.00 0.00 3.86
540 580 3.095912 TCGGTAGAAGAGGAATGTGGA 57.904 47.619 0.00 0.00 0.00 4.02
541 581 3.887621 TTCGGTAGAAGAGGAATGTGG 57.112 47.619 0.00 0.00 31.76 4.17
651 693 2.951458 CCGTTTCGAAACCCCTGC 59.049 61.111 29.95 9.31 35.51 4.85
811 857 1.208706 GGAAGGAAGGAAGGAGGGAG 58.791 60.000 0.00 0.00 0.00 4.30
812 858 0.253207 GGGAAGGAAGGAAGGAGGGA 60.253 60.000 0.00 0.00 0.00 4.20
813 859 0.253394 AGGGAAGGAAGGAAGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
814 860 1.675007 AAGGGAAGGAAGGAAGGAGG 58.325 55.000 0.00 0.00 0.00 4.30
819 865 8.010697 AGAAAGAAAATAAAGGGAAGGAAGGAA 58.989 33.333 0.00 0.00 0.00 3.36
837 883 7.012421 CGGAGAGGAAAGAAAGAAAGAAAGAAA 59.988 37.037 0.00 0.00 0.00 2.52
838 884 6.483640 CGGAGAGGAAAGAAAGAAAGAAAGAA 59.516 38.462 0.00 0.00 0.00 2.52
839 885 5.992217 CGGAGAGGAAAGAAAGAAAGAAAGA 59.008 40.000 0.00 0.00 0.00 2.52
840 886 5.180304 CCGGAGAGGAAAGAAAGAAAGAAAG 59.820 44.000 0.00 0.00 45.00 2.62
985 1041 3.445687 CATGGACGGACCGACGGA 61.446 66.667 23.38 4.95 42.61 4.69
986 1042 4.508128 CCATGGACGGACCGACGG 62.508 72.222 23.38 13.61 42.61 4.79
992 1048 4.430765 ACGACGCCATGGACGGAC 62.431 66.667 25.35 18.86 34.00 4.79
993 1049 4.124351 GACGACGCCATGGACGGA 62.124 66.667 25.35 0.00 34.00 4.69
1537 1593 1.554160 CATGGGTTTATTGGCCAAGCA 59.446 47.619 24.94 11.50 0.00 3.91
1540 1596 4.982241 TTTTCATGGGTTTATTGGCCAA 57.018 36.364 23.00 23.00 0.00 4.52
1541 1597 5.511386 AATTTTCATGGGTTTATTGGCCA 57.489 34.783 0.00 0.00 0.00 5.36
1544 1600 7.361116 GCTGACAAATTTTCATGGGTTTATTGG 60.361 37.037 0.00 0.00 0.00 3.16
1546 1602 7.222872 TGCTGACAAATTTTCATGGGTTTATT 58.777 30.769 0.00 0.00 0.00 1.40
1548 1604 6.166984 TGCTGACAAATTTTCATGGGTTTA 57.833 33.333 0.00 0.00 0.00 2.01
1571 1632 4.135153 CTCGTAGCTGGGCACGCT 62.135 66.667 10.07 10.07 41.35 5.07
1716 1785 4.026558 GCGCCTTTTGAAGTTTTTCAGAAG 60.027 41.667 11.48 11.48 46.89 2.85
1753 1824 2.119655 CAGCAAGATGAGGCCCAGC 61.120 63.158 0.00 0.00 0.00 4.85
1878 1949 7.094805 GCGATTAATCTGGAATAAATACAGCCA 60.095 37.037 13.45 0.00 32.42 4.75
2062 2142 1.841663 CGGTGTTGGGAACTCAAGCG 61.842 60.000 0.00 0.00 0.00 4.68
2077 2157 1.299541 CCTATAGCTTTGGCACGGTG 58.700 55.000 3.15 3.15 41.70 4.94
2096 2178 0.605589 AACGGTAGACTTTGCAGGGC 60.606 55.000 0.00 0.00 0.00 5.19
2191 2275 4.700365 CCACGTCGTGCGAGCTCA 62.700 66.667 20.01 0.00 44.77 4.26
2294 2382 2.838736 AGCTAAGACATGGTATTGGCG 58.161 47.619 6.46 0.00 43.86 5.69
2295 2383 3.316308 CCAAGCTAAGACATGGTATTGGC 59.684 47.826 4.24 4.24 40.54 4.52
2296 2384 4.576463 GTCCAAGCTAAGACATGGTATTGG 59.424 45.833 10.40 2.04 37.80 3.16
2297 2385 5.185454 TGTCCAAGCTAAGACATGGTATTG 58.815 41.667 13.28 0.00 38.07 1.90
2601 2694 2.739849 TTTGGATTCTGCCCGCGTCA 62.740 55.000 4.92 1.17 0.00 4.35
2789 2970 2.104669 GGCTAGTCCCTATTGGTCCT 57.895 55.000 0.00 0.00 34.77 3.85
2923 3120 3.616821 TCAATAAGCCATGACGAGTTTCG 59.383 43.478 0.00 0.00 46.93 3.46
2949 3146 7.228906 TGTCCGACAAAGGTTTAAATTGTGATA 59.771 33.333 9.75 0.26 37.41 2.15
3164 3417 2.168728 AGTAGTTGATCCTCCGGCTTTC 59.831 50.000 0.00 0.00 0.00 2.62
3239 3492 0.943673 CATGTGCACGGACAAAGACA 59.056 50.000 13.13 0.00 0.00 3.41
3277 3530 9.736023 GTTGAGCATTATAGGGTTAAAATCTTG 57.264 33.333 0.00 0.00 0.00 3.02
3404 3657 8.484799 CAGTCATTGTGCAAATAAATATGATGC 58.515 33.333 0.00 0.00 37.52 3.91
3505 3759 9.512588 GTCTCATAACCTGGAATGATCAAATAT 57.487 33.333 14.00 0.00 31.95 1.28
3541 3795 1.949525 CATAGTAGGCACCAACATGGC 59.050 52.381 0.00 0.00 42.67 4.40
3629 3883 9.575868 TTCCAGTATCTAGTAATAGAGTCCTTG 57.424 37.037 6.05 0.84 0.00 3.61
3643 3897 9.967346 TGAGATAATTTCGTTTCCAGTATCTAG 57.033 33.333 0.00 0.00 29.29 2.43
3667 3921 9.701098 CGTAGGCTTTATATTTAGTTGGTATGA 57.299 33.333 0.00 0.00 0.00 2.15
3710 3964 9.634163 GAATTAAAAAGGTACCCAACATAACTG 57.366 33.333 8.74 0.00 0.00 3.16
3779 4033 2.028420 TCAAATGGAGCATGTCTCGG 57.972 50.000 9.92 0.75 42.82 4.63
3821 4075 2.642311 TGGGCAACTGTTGATCTAGGAA 59.358 45.455 23.81 0.00 0.00 3.36
3897 4152 2.027837 GGTCGCCTAGGTTTCTGGTTTA 60.028 50.000 11.31 0.00 0.00 2.01
3930 4185 4.492791 AAAACTTTTTGGACGGTATCGG 57.507 40.909 0.00 0.00 41.39 4.18
3992 4247 9.935241 CTTGCTTATGACTATCTTGGTATATGT 57.065 33.333 0.00 0.00 0.00 2.29
3994 4249 8.597167 TGCTTGCTTATGACTATCTTGGTATAT 58.403 33.333 0.00 0.00 0.00 0.86
4014 4269 1.001378 ACCATTTCGACAAGTGCTTGC 60.001 47.619 11.43 4.53 44.03 4.01
4027 4283 0.938008 GTAGCGCTGCCTACCATTTC 59.062 55.000 22.90 0.00 33.24 2.17
4038 4294 3.914966 CGTAAGAATGATAGGTAGCGCTG 59.085 47.826 22.90 0.00 43.02 5.18
4171 4428 1.672881 TCCGCTCGCTTACTTACCTAC 59.327 52.381 0.00 0.00 0.00 3.18
4189 4446 4.652822 AGTACTTTCTGGTGAATTGGTCC 58.347 43.478 0.00 0.00 31.56 4.46
4350 4620 7.658167 GGATAATAAGAAAGGAGGTAAGAGCAC 59.342 40.741 0.00 0.00 0.00 4.40
4632 4902 9.303537 CATTTGCAAACAATCAATTTCCTTTTT 57.696 25.926 15.41 0.00 35.21 1.94
4633 4903 7.435784 GCATTTGCAAACAATCAATTTCCTTTT 59.564 29.630 15.41 0.00 41.59 2.27
4634 4904 6.919115 GCATTTGCAAACAATCAATTTCCTTT 59.081 30.769 15.41 0.00 41.59 3.11
4635 4905 6.440436 GCATTTGCAAACAATCAATTTCCTT 58.560 32.000 15.41 0.00 41.59 3.36
4636 4906 5.048573 GGCATTTGCAAACAATCAATTTCCT 60.049 36.000 15.41 0.00 44.36 3.36
4637 4907 5.155643 GGCATTTGCAAACAATCAATTTCC 58.844 37.500 15.41 0.00 44.36 3.13
4638 4908 5.759963 TGGCATTTGCAAACAATCAATTTC 58.240 33.333 15.41 0.00 44.36 2.17
4639 4909 5.769484 TGGCATTTGCAAACAATCAATTT 57.231 30.435 15.41 0.00 44.36 1.82
4640 4910 5.769484 TTGGCATTTGCAAACAATCAATT 57.231 30.435 15.41 0.00 44.36 2.32
4641 4911 5.769484 TTTGGCATTTGCAAACAATCAAT 57.231 30.435 15.41 0.00 44.36 2.57
4642 4912 5.571784 TTTTGGCATTTGCAAACAATCAA 57.428 30.435 15.41 13.32 44.36 2.57
4643 4913 5.298527 TCATTTTGGCATTTGCAAACAATCA 59.701 32.000 15.41 8.02 44.36 2.57
4644 4914 5.759963 TCATTTTGGCATTTGCAAACAATC 58.240 33.333 15.41 5.44 44.36 2.67
4645 4915 5.769484 TCATTTTGGCATTTGCAAACAAT 57.231 30.435 15.41 0.00 44.36 2.71
4646 4916 5.298527 TCATCATTTTGGCATTTGCAAACAA 59.701 32.000 15.41 11.62 44.36 2.83
4647 4917 4.820173 TCATCATTTTGGCATTTGCAAACA 59.180 33.333 15.41 5.37 44.36 2.83
4648 4918 5.359716 TCATCATTTTGGCATTTGCAAAC 57.640 34.783 15.41 2.27 44.36 2.93
4649 4919 6.387041 TTTCATCATTTTGGCATTTGCAAA 57.613 29.167 15.44 15.44 44.36 3.68
4650 4920 6.387041 TTTTCATCATTTTGGCATTTGCAA 57.613 29.167 4.74 0.00 44.36 4.08
4651 4921 6.576662 ATTTTCATCATTTTGGCATTTGCA 57.423 29.167 4.74 0.00 44.36 4.08
4652 4922 9.015577 CAATATTTTCATCATTTTGGCATTTGC 57.984 29.630 0.00 0.00 41.14 3.68
4658 4928 9.281075 GCTTTTCAATATTTTCATCATTTTGGC 57.719 29.630 0.00 0.00 0.00 4.52
4720 5046 7.472741 TCTTATATTATGGGACGGAAGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
4721 5047 6.320518 TCTTATATTATGGGACGGAAGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
4722 5048 6.852420 TCTTATATTATGGGACGGAAGGAG 57.148 41.667 0.00 0.00 0.00 3.69
4723 5049 6.294899 CGTTCTTATATTATGGGACGGAAGGA 60.295 42.308 0.00 0.00 0.00 3.36
4724 5050 5.867716 CGTTCTTATATTATGGGACGGAAGG 59.132 44.000 0.00 0.00 0.00 3.46
4725 5051 6.453092 ACGTTCTTATATTATGGGACGGAAG 58.547 40.000 13.18 0.00 0.00 3.46
4726 5052 6.409524 ACGTTCTTATATTATGGGACGGAA 57.590 37.500 13.18 0.00 0.00 4.30
4727 5053 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4728 5054 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4760 5086 9.658799 GCATATATAAATCACATGTACTCCACT 57.341 33.333 0.00 0.00 0.00 4.00
4761 5087 9.435688 TGCATATATAAATCACATGTACTCCAC 57.564 33.333 0.00 0.00 0.00 4.02
4762 5088 9.435688 GTGCATATATAAATCACATGTACTCCA 57.564 33.333 0.00 0.00 31.87 3.86
4763 5089 9.435688 TGTGCATATATAAATCACATGTACTCC 57.564 33.333 0.00 0.00 34.54 3.85
4769 5292 9.733219 TGTGTTTGTGCATATATAAATCACATG 57.267 29.630 12.70 0.00 37.48 3.21
4792 5315 7.815068 GGTATATTAGCTCTGTATCCTTGTGTG 59.185 40.741 0.00 0.00 0.00 3.82
5116 5646 9.762933 CAGATTTGAAAGGAAAATAACAGGAAA 57.237 29.630 0.00 0.00 0.00 3.13
5177 5708 4.964897 TCACCATAGATCAACTCAGGTCAT 59.035 41.667 0.00 0.00 34.93 3.06
5178 5709 4.352893 TCACCATAGATCAACTCAGGTCA 58.647 43.478 0.00 0.00 34.93 4.02
5179 5710 5.537188 GATCACCATAGATCAACTCAGGTC 58.463 45.833 0.00 0.00 43.07 3.85
5309 5844 0.535102 CGAACACCCTGTCCTGCTTT 60.535 55.000 0.00 0.00 0.00 3.51
5441 5976 2.281761 ACGTGGTACCCGACGTCT 60.282 61.111 21.17 3.76 45.36 4.18
5444 5979 1.226491 GATGACGTGGTACCCGACG 60.226 63.158 23.94 22.03 41.41 5.12
5558 6093 0.681887 TGAGCCGGACGACATCCTTA 60.682 55.000 5.05 0.00 46.69 2.69
5980 6516 4.193893 CCGATGCATGGGGCCTCA 62.194 66.667 19.41 8.41 43.89 3.86
5983 6519 3.219198 GAACCGATGCATGGGGCC 61.219 66.667 28.73 17.02 43.89 5.80
5984 6520 1.394266 ATTGAACCGATGCATGGGGC 61.394 55.000 28.73 20.62 45.13 5.80
5985 6521 0.386476 CATTGAACCGATGCATGGGG 59.614 55.000 28.73 19.86 0.00 4.96
5986 6522 0.386476 CCATTGAACCGATGCATGGG 59.614 55.000 24.68 24.68 0.00 4.00
5987 6523 1.105457 ACCATTGAACCGATGCATGG 58.895 50.000 2.46 8.85 0.00 3.66
5988 6524 2.164017 TGAACCATTGAACCGATGCATG 59.836 45.455 2.46 0.00 0.00 4.06
5989 6525 2.445427 TGAACCATTGAACCGATGCAT 58.555 42.857 0.00 0.00 0.00 3.96
5990 6526 1.902938 TGAACCATTGAACCGATGCA 58.097 45.000 0.00 0.00 0.00 3.96
6004 6546 5.099575 CACCTGTTAACAAACTGTTGAACC 58.900 41.667 10.03 0.00 41.30 3.62
6027 6569 4.697514 TGCCTCATCAGCAGAGTAATTAC 58.302 43.478 7.57 7.57 34.69 1.89
6145 6689 8.025445 ACTTCATCTTCATTTTGTTCTACATGC 58.975 33.333 0.00 0.00 0.00 4.06
6169 6713 3.201487 TCATGGGCTCTGAAATCATCACT 59.799 43.478 0.00 0.00 33.47 3.41
6344 6891 1.305297 AGATCTGCAGGACGGACCA 60.305 57.895 15.13 0.00 42.04 4.02
6425 6972 0.445436 CATTGACGAGTCCAAGCTGC 59.555 55.000 0.34 0.00 0.00 5.25
6426 6973 1.081892 CCATTGACGAGTCCAAGCTG 58.918 55.000 0.34 0.00 0.00 4.24
6427 6974 0.674895 GCCATTGACGAGTCCAAGCT 60.675 55.000 0.34 0.00 0.00 3.74
6474 7024 4.657436 AGAAAGAGCTATTGGTCGTAGG 57.343 45.455 0.00 0.00 44.65 3.18
6534 7084 4.552767 GCGTTTCATATCACCATGTGCTAC 60.553 45.833 0.00 0.00 32.98 3.58
6587 7137 3.683847 GCCTTGATCAGTTGCATCTAGGT 60.684 47.826 13.78 0.00 42.25 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.