Multiple sequence alignment - TraesCS7A01G247900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G247900 chr7A 100.000 4211 0 0 1 4211 229029914 229025704 0.000000e+00 7777
1 TraesCS7A01G247900 chr7B 97.385 1606 36 5 1790 3394 184338023 184339623 0.000000e+00 2728
2 TraesCS7A01G247900 chr7B 95.951 741 21 4 997 1737 184337028 184337759 0.000000e+00 1194
3 TraesCS7A01G247900 chr7B 91.242 628 31 6 348 955 184336395 184337018 0.000000e+00 833
4 TraesCS7A01G247900 chr7B 90.909 176 8 6 8 181 184335669 184335838 3.270000e-56 230
5 TraesCS7A01G247900 chr7D 92.053 1812 62 31 6 1788 215942165 215940407 0.000000e+00 2473
6 TraesCS7A01G247900 chr7D 96.877 1441 39 4 1790 3230 215940355 215938921 0.000000e+00 2407
7 TraesCS7A01G247900 chr6B 100.000 820 0 0 3392 4211 577333643 577334462 0.000000e+00 1515
8 TraesCS7A01G247900 chr1B 99.514 823 3 1 3390 4211 24145300 24146122 0.000000e+00 1496
9 TraesCS7A01G247900 chr4A 99.633 817 3 0 3395 4211 210989695 210988879 0.000000e+00 1493
10 TraesCS7A01G247900 chr4A 99.511 818 4 0 3394 4211 637929424 637928607 0.000000e+00 1489
11 TraesCS7A01G247900 chr2B 99.633 817 3 0 3395 4211 593646324 593645508 0.000000e+00 1493
12 TraesCS7A01G247900 chrUn 99.511 818 4 0 3394 4211 49778935 49779752 0.000000e+00 1489
13 TraesCS7A01G247900 chrUn 99.510 817 4 0 3395 4211 128499219 128498403 0.000000e+00 1487
14 TraesCS7A01G247900 chr3B 99.510 817 4 0 3395 4211 592657858 592657042 0.000000e+00 1487
15 TraesCS7A01G247900 chr1A 99.510 817 4 0 3395 4211 203811763 203812579 0.000000e+00 1487


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G247900 chr7A 229025704 229029914 4210 True 7777.00 7777 100.00000 1 4211 1 chr7A.!!$R1 4210
1 TraesCS7A01G247900 chr7B 184335669 184339623 3954 False 1246.25 2728 93.87175 8 3394 4 chr7B.!!$F1 3386
2 TraesCS7A01G247900 chr7D 215938921 215942165 3244 True 2440.00 2473 94.46500 6 3230 2 chr7D.!!$R1 3224
3 TraesCS7A01G247900 chr6B 577333643 577334462 819 False 1515.00 1515 100.00000 3392 4211 1 chr6B.!!$F1 819
4 TraesCS7A01G247900 chr1B 24145300 24146122 822 False 1496.00 1496 99.51400 3390 4211 1 chr1B.!!$F1 821
5 TraesCS7A01G247900 chr4A 210988879 210989695 816 True 1493.00 1493 99.63300 3395 4211 1 chr4A.!!$R1 816
6 TraesCS7A01G247900 chr4A 637928607 637929424 817 True 1489.00 1489 99.51100 3394 4211 1 chr4A.!!$R2 817
7 TraesCS7A01G247900 chr2B 593645508 593646324 816 True 1493.00 1493 99.63300 3395 4211 1 chr2B.!!$R1 816
8 TraesCS7A01G247900 chrUn 49778935 49779752 817 False 1489.00 1489 99.51100 3394 4211 1 chrUn.!!$F1 817
9 TraesCS7A01G247900 chrUn 128498403 128499219 816 True 1487.00 1487 99.51000 3395 4211 1 chrUn.!!$R1 816
10 TraesCS7A01G247900 chr3B 592657042 592657858 816 True 1487.00 1487 99.51000 3395 4211 1 chr3B.!!$R1 816
11 TraesCS7A01G247900 chr1A 203811763 203812579 816 False 1487.00 1487 99.51000 3395 4211 1 chr1A.!!$F1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 896 0.250295 CAAGAAGAACCCACGGCAGA 60.250 55.000 0.00 0.00 0.00 4.26 F
960 1396 0.809636 CGCGCAGAGAGAGAGAGAGA 60.810 60.000 8.75 0.00 0.00 3.10 F
1593 2031 1.373748 GGCAGCGAGTCCACGTAAA 60.374 57.895 0.00 0.00 35.59 2.01 F
2345 2996 0.961019 TTCGCAGCTTGATTTGCCTT 59.039 45.000 0.00 0.00 37.00 4.35 F
2476 3127 1.066573 AGGAAGCCTCACACGATTGAG 60.067 52.381 10.07 10.07 42.46 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2315 2966 1.078143 GCTGCGAAGATCCCCAACT 60.078 57.895 0.00 0.0 0.0 3.16 R
2345 2996 1.918262 AGCTGATTTCCCCTCACATCA 59.082 47.619 0.00 0.0 0.0 3.07 R
3057 3708 0.686441 TGTACTGGACGGCAGCCTAT 60.686 55.000 10.54 0.0 0.0 2.57 R
3153 3804 1.615392 CTTTTGTTGGGCCTGGAGAAG 59.385 52.381 4.53 0.0 0.0 2.85 R
3307 3958 2.227194 ACAACAGAAACCCGAACCATC 58.773 47.619 0.00 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.572389 CCACTGATAATCACAGCTTACCAC 59.428 45.833 0.00 0.00 38.74 4.16
104 106 4.806640 AAATCAGCACGGGATCATTTTT 57.193 36.364 0.00 0.00 0.00 1.94
105 107 3.788333 ATCAGCACGGGATCATTTTTG 57.212 42.857 0.00 0.00 0.00 2.44
158 160 0.392998 AATCGGCGCATCTGAAACCT 60.393 50.000 10.83 0.00 32.98 3.50
204 206 0.955428 AAGATCGCTCAAAAGCCGCA 60.955 50.000 0.00 0.00 46.34 5.69
221 223 1.645751 CGCATGCTTTTCGCTTTTCTC 59.354 47.619 17.13 0.00 40.11 2.87
234 236 6.473397 TCGCTTTTCTCTTCAATTTCTCTC 57.527 37.500 0.00 0.00 0.00 3.20
235 237 5.409826 TCGCTTTTCTCTTCAATTTCTCTCC 59.590 40.000 0.00 0.00 0.00 3.71
248 250 7.833786 TCAATTTCTCTCCAAGGAAAATCATG 58.166 34.615 0.00 0.00 35.50 3.07
249 251 6.786967 ATTTCTCTCCAAGGAAAATCATGG 57.213 37.500 0.00 0.00 35.50 3.66
250 252 4.240881 TCTCTCCAAGGAAAATCATGGG 57.759 45.455 0.00 0.00 33.66 4.00
275 277 3.119352 GGCAAATGAAGTGAAGTGGATCC 60.119 47.826 4.20 4.20 0.00 3.36
367 759 1.456518 TCTCTCTCATCCCCAGGCG 60.457 63.158 0.00 0.00 0.00 5.52
387 779 1.210204 AGAGGCAGGCTCCAATGGAA 61.210 55.000 20.18 0.00 0.00 3.53
394 786 3.056313 GCTCCAATGGAAGCCACGC 62.056 63.158 2.61 0.00 35.80 5.34
397 789 2.053865 CCAATGGAAGCCACGCCAT 61.054 57.895 0.00 0.00 46.49 4.40
422 814 2.918712 AGAGTGGAGTTGGAGTTGTG 57.081 50.000 0.00 0.00 0.00 3.33
434 826 1.251251 GAGTTGTGCTGCCCATTTCT 58.749 50.000 0.00 0.00 0.00 2.52
445 837 1.758862 GCCCATTTCTCATTTCCCCAG 59.241 52.381 0.00 0.00 0.00 4.45
446 838 2.624029 GCCCATTTCTCATTTCCCCAGA 60.624 50.000 0.00 0.00 0.00 3.86
447 839 3.294214 CCCATTTCTCATTTCCCCAGAG 58.706 50.000 0.00 0.00 0.00 3.35
448 840 3.309410 CCCATTTCTCATTTCCCCAGAGT 60.309 47.826 0.00 0.00 0.00 3.24
488 895 1.237285 CCAAGAAGAACCCACGGCAG 61.237 60.000 0.00 0.00 0.00 4.85
489 896 0.250295 CAAGAAGAACCCACGGCAGA 60.250 55.000 0.00 0.00 0.00 4.26
514 927 2.510906 CAATTCCCCGATCCCGCT 59.489 61.111 0.00 0.00 0.00 5.52
643 1056 2.679642 TGGGAATTTGCCGGCCTG 60.680 61.111 26.77 0.00 0.00 4.85
697 1110 3.028366 GAAAGTTGCGCGCTCTCCC 62.028 63.158 33.29 18.99 0.00 4.30
698 1111 3.537206 AAAGTTGCGCGCTCTCCCT 62.537 57.895 33.29 16.69 0.00 4.20
699 1112 3.941657 AAGTTGCGCGCTCTCCCTC 62.942 63.158 33.29 13.58 0.00 4.30
700 1113 4.443266 GTTGCGCGCTCTCCCTCT 62.443 66.667 33.29 0.00 0.00 3.69
742 1155 1.461127 GTCGAAGCTTTGATCTGCGTT 59.539 47.619 19.35 0.00 34.34 4.84
770 1183 5.641209 CACCTGTTGTTCTTCTTATCCTCAG 59.359 44.000 0.00 0.00 0.00 3.35
955 1391 4.903355 CCGCGCGCAGAGAGAGAG 62.903 72.222 32.61 11.04 0.00 3.20
958 1394 2.468670 GCGCGCAGAGAGAGAGAGA 61.469 63.158 29.10 0.00 0.00 3.10
959 1395 1.643292 CGCGCAGAGAGAGAGAGAG 59.357 63.158 8.75 0.00 0.00 3.20
960 1396 0.809636 CGCGCAGAGAGAGAGAGAGA 60.810 60.000 8.75 0.00 0.00 3.10
963 1399 2.477825 CGCAGAGAGAGAGAGAGAGAG 58.522 57.143 0.00 0.00 0.00 3.20
964 1400 2.101415 CGCAGAGAGAGAGAGAGAGAGA 59.899 54.545 0.00 0.00 0.00 3.10
965 1401 3.726607 GCAGAGAGAGAGAGAGAGAGAG 58.273 54.545 0.00 0.00 0.00 3.20
966 1402 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
967 1403 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
968 1404 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
969 1405 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
970 1406 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
971 1407 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
982 1418 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
1410 1848 2.887568 GGTGCTGCGTCATCCTCG 60.888 66.667 0.00 0.00 0.00 4.63
1414 1852 2.278206 CTGCGTCATCCTCGTCGG 60.278 66.667 0.00 0.00 0.00 4.79
1593 2031 1.373748 GGCAGCGAGTCCACGTAAA 60.374 57.895 0.00 0.00 35.59 2.01
1674 2112 7.861372 GGTGAGCCTTTTCTACTTTTTAAGTTC 59.139 37.037 0.00 0.00 42.81 3.01
1744 2346 8.023128 ACTGTCATGCAAGTTATTATGTGTTTC 58.977 33.333 0.00 0.00 0.00 2.78
1784 2386 4.882842 ACTGGGAAAACTTGTGTTGTTT 57.117 36.364 0.00 0.00 39.03 2.83
1785 2387 4.816392 ACTGGGAAAACTTGTGTTGTTTC 58.184 39.130 0.00 0.00 36.72 2.78
1824 2475 7.928873 TGGAAATTAACTGAACCCTCTCTATT 58.071 34.615 0.00 0.00 0.00 1.73
1848 2499 4.136796 TGGAGCTGGAATTATGTGCATAC 58.863 43.478 0.00 0.00 0.00 2.39
1855 2506 6.707440 TGGAATTATGTGCATACCGATTTT 57.293 33.333 0.00 0.00 0.00 1.82
1860 2511 9.677567 GAATTATGTGCATACCGATTTTGTTAT 57.322 29.630 0.00 0.00 0.00 1.89
1897 2548 6.108015 GCATATTGATTGATTGGTTGGTTGT 58.892 36.000 0.00 0.00 0.00 3.32
1959 2610 5.710099 TGGAAATGAATTGAACCCTGTCTAC 59.290 40.000 0.00 0.00 0.00 2.59
1978 2629 5.049129 GTCTACATTGGAGCTGGAATTATGC 60.049 44.000 0.00 0.00 0.00 3.14
1984 2635 1.605710 GAGCTGGAATTATGCGCATGT 59.394 47.619 32.48 18.03 0.00 3.21
2069 2720 6.666678 TGCAGGAGATGATAAGGAGAAAATT 58.333 36.000 0.00 0.00 0.00 1.82
2315 2966 2.604912 TAGCTCAACTCCCTGACTCA 57.395 50.000 0.00 0.00 0.00 3.41
2345 2996 0.961019 TTCGCAGCTTGATTTGCCTT 59.039 45.000 0.00 0.00 37.00 4.35
2349 3000 2.268298 GCAGCTTGATTTGCCTTGATG 58.732 47.619 0.00 0.00 34.28 3.07
2476 3127 1.066573 AGGAAGCCTCACACGATTGAG 60.067 52.381 10.07 10.07 42.46 3.02
2487 3138 4.279922 TCACACGATTGAGGAAGTTACTGA 59.720 41.667 0.00 0.00 0.00 3.41
2489 3140 5.639506 CACACGATTGAGGAAGTTACTGATT 59.360 40.000 0.00 0.00 0.00 2.57
2968 3619 3.623453 GCTTTAAAGGGAGCTCAGGTGAT 60.623 47.826 17.19 0.00 36.01 3.06
3033 3684 6.579666 TGATACGTAGTTTAGTGACTGGTT 57.420 37.500 0.08 0.00 37.78 3.67
3153 3804 1.831580 ATTGGGCTCAGTTCTGCTTC 58.168 50.000 0.00 0.00 0.00 3.86
3266 3917 7.928908 TTGTTTACTGCATCAGAAATGTTTC 57.071 32.000 0.29 0.00 35.18 2.78
3305 3956 1.886655 GCTTCCCCTTCGACAATGGTT 60.887 52.381 0.00 0.00 0.00 3.67
3306 3957 2.084546 CTTCCCCTTCGACAATGGTTC 58.915 52.381 0.00 0.00 0.00 3.62
3307 3958 0.036765 TCCCCTTCGACAATGGTTCG 60.037 55.000 0.00 0.00 0.00 3.95
3308 3959 0.036765 CCCCTTCGACAATGGTTCGA 60.037 55.000 0.00 0.00 0.00 3.71
3309 3960 1.406887 CCCCTTCGACAATGGTTCGAT 60.407 52.381 0.00 0.00 35.75 3.59
3311 3962 1.665679 CCTTCGACAATGGTTCGATGG 59.334 52.381 11.67 11.67 42.03 3.51
3312 3963 2.346803 CTTCGACAATGGTTCGATGGT 58.653 47.619 0.00 0.00 35.75 3.55
3313 3964 2.465860 TCGACAATGGTTCGATGGTT 57.534 45.000 0.00 0.00 0.00 3.67
3314 3965 2.343101 TCGACAATGGTTCGATGGTTC 58.657 47.619 0.00 0.00 0.00 3.62
3317 3968 0.732571 CAATGGTTCGATGGTTCGGG 59.267 55.000 0.00 0.00 45.53 5.14
3320 3971 0.108963 TGGTTCGATGGTTCGGGTTT 59.891 50.000 0.00 0.00 45.53 3.27
3333 3984 4.153655 GGTTCGGGTTTCTGTTGTAGAATC 59.846 45.833 0.00 0.00 44.54 2.52
3340 3991 6.655003 GGGTTTCTGTTGTAGAATCAAGATGA 59.345 38.462 0.00 0.00 44.54 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.255881 CGTCACAAAACCCCCGGTC 61.256 63.158 0.00 0.00 33.12 4.79
1 2 2.203238 CGTCACAAAACCCCCGGT 60.203 61.111 0.00 0.00 37.65 5.28
2 3 2.203238 ACGTCACAAAACCCCCGG 60.203 61.111 0.00 0.00 0.00 5.73
3 4 1.820481 ACACGTCACAAAACCCCCG 60.820 57.895 0.00 0.00 0.00 5.73
4 5 1.731093 CACACGTCACAAAACCCCC 59.269 57.895 0.00 0.00 0.00 5.40
46 47 2.716828 CGCGACGTGGTAAGCTGTG 61.717 63.158 0.00 0.00 0.00 3.66
92 94 9.511144 GTTTATAAGGTAACAAAAATGATCCCG 57.489 33.333 0.00 0.00 41.41 5.14
104 106 8.140628 TGTCGTACACTTGTTTATAAGGTAACA 58.859 33.333 0.00 0.00 41.41 2.41
105 107 8.427774 GTGTCGTACACTTGTTTATAAGGTAAC 58.572 37.037 9.86 0.00 45.27 2.50
158 160 0.905809 TTTGGCTGCCCGTACCTCTA 60.906 55.000 17.53 0.00 0.00 2.43
221 223 7.889469 TGATTTTCCTTGGAGAGAAATTGAAG 58.111 34.615 0.97 0.00 32.33 3.02
250 252 1.273327 CACTTCACTTCATTTGCCCCC 59.727 52.381 0.00 0.00 0.00 5.40
275 277 2.671396 GCATTATTATACCGCCCGACTG 59.329 50.000 0.00 0.00 0.00 3.51
367 759 1.153005 CCATTGGAGCCTGCCTCTC 60.153 63.158 0.00 0.00 40.57 3.20
394 786 2.341257 CAACTCCACTCTTCACGATGG 58.659 52.381 0.00 0.00 0.00 3.51
397 789 1.613925 CTCCAACTCCACTCTTCACGA 59.386 52.381 0.00 0.00 0.00 4.35
422 814 1.137675 GGGAAATGAGAAATGGGCAGC 59.862 52.381 0.00 0.00 0.00 5.25
434 826 1.635487 CTTGGGACTCTGGGGAAATGA 59.365 52.381 0.00 0.00 0.00 2.57
445 837 1.904990 GCCCTGGTCTCTTGGGACTC 61.905 65.000 0.91 0.00 43.47 3.36
446 838 1.920835 GCCCTGGTCTCTTGGGACT 60.921 63.158 0.91 0.00 43.47 3.85
447 839 2.671682 GCCCTGGTCTCTTGGGAC 59.328 66.667 0.91 0.00 43.47 4.46
448 840 2.610859 GGCCCTGGTCTCTTGGGA 60.611 66.667 0.91 0.00 43.47 4.37
491 898 4.894896 ATCGGGGAATTGGGCGCC 62.895 66.667 21.18 21.18 35.22 6.53
492 899 3.287520 GATCGGGGAATTGGGCGC 61.288 66.667 0.00 0.00 0.00 6.53
493 900 2.594592 GGATCGGGGAATTGGGCG 60.595 66.667 0.00 0.00 0.00 6.13
545 958 1.078848 CGACCCAGGCCAAGAAGAG 60.079 63.158 5.01 0.00 0.00 2.85
643 1056 2.928801 AAACCAAATCCAACAAGGCC 57.071 45.000 0.00 0.00 37.29 5.19
697 1110 1.653114 CGCGAGAAAAAGCAGAGAGAG 59.347 52.381 0.00 0.00 0.00 3.20
698 1111 1.670087 CCGCGAGAAAAAGCAGAGAGA 60.670 52.381 8.23 0.00 0.00 3.10
699 1112 0.718343 CCGCGAGAAAAAGCAGAGAG 59.282 55.000 8.23 0.00 0.00 3.20
700 1113 0.670546 CCCGCGAGAAAAAGCAGAGA 60.671 55.000 8.23 0.00 0.00 3.10
725 1138 3.186409 TGTGTAACGCAGATCAAAGCTTC 59.814 43.478 0.00 0.00 42.39 3.86
742 1155 6.042781 AGGATAAGAAGAACAACAGGTGTGTA 59.957 38.462 0.00 0.00 40.60 2.90
770 1183 3.866582 CCTCCACCTCGGATGCCC 61.867 72.222 0.00 0.00 45.19 5.36
901 1319 3.371380 GCCCAAGAATTCAGATCTCCACT 60.371 47.826 8.44 0.00 0.00 4.00
902 1320 2.948315 GCCCAAGAATTCAGATCTCCAC 59.052 50.000 8.44 0.00 0.00 4.02
903 1321 2.848694 AGCCCAAGAATTCAGATCTCCA 59.151 45.455 8.44 0.00 0.00 3.86
955 1391 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
958 1394 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
959 1395 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
960 1396 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
963 1399 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
964 1400 3.421394 TCCCTCTCTCTCTCTCTCTCT 57.579 52.381 0.00 0.00 0.00 3.10
965 1401 3.745797 GCTTCCCTCTCTCTCTCTCTCTC 60.746 56.522 0.00 0.00 0.00 3.20
966 1402 2.173569 GCTTCCCTCTCTCTCTCTCTCT 59.826 54.545 0.00 0.00 0.00 3.10
967 1403 2.576615 GCTTCCCTCTCTCTCTCTCTC 58.423 57.143 0.00 0.00 0.00 3.20
968 1404 1.215423 GGCTTCCCTCTCTCTCTCTCT 59.785 57.143 0.00 0.00 0.00 3.10
969 1405 1.692411 GGCTTCCCTCTCTCTCTCTC 58.308 60.000 0.00 0.00 0.00 3.20
970 1406 0.106719 CGGCTTCCCTCTCTCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
971 1407 0.106918 TCGGCTTCCCTCTCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
982 1418 1.051556 ATTCCTCCCTCTCGGCTTCC 61.052 60.000 0.00 0.00 0.00 3.46
995 1431 4.918201 CCGCCGCCTCCATTCCTC 62.918 72.222 0.00 0.00 0.00 3.71
1308 1746 2.710902 CCGCTGGATGAGGTCGTCA 61.711 63.158 0.00 0.00 40.38 4.35
1647 2085 4.830826 AAAAAGTAGAAAAGGCTCACCG 57.169 40.909 0.00 0.00 42.76 4.94
1674 2112 4.805192 AGCACAATTTTGGCATATAAAGCG 59.195 37.500 0.00 0.00 0.00 4.68
1768 2370 9.791838 CAAAACTAAGAAACAACACAAGTTTTC 57.208 29.630 7.18 0.00 41.31 2.29
1809 2460 4.080638 AGCTCCAAAATAGAGAGGGTTCAG 60.081 45.833 0.00 0.00 32.86 3.02
1824 2475 3.429492 TGCACATAATTCCAGCTCCAAA 58.571 40.909 0.00 0.00 0.00 3.28
1867 2518 7.927092 CCAACCAATCAATCAATATGCACATTA 59.073 33.333 0.00 0.00 0.00 1.90
1868 2519 6.764085 CCAACCAATCAATCAATATGCACATT 59.236 34.615 0.00 0.00 0.00 2.71
1959 2610 2.606308 GCGCATAATTCCAGCTCCAATG 60.606 50.000 0.30 0.00 0.00 2.82
1978 2629 6.752335 TCTTTTGAAAGAAATCAACATGCG 57.248 33.333 3.79 0.00 41.75 4.73
2017 2668 4.524316 ATCATCAACCAACCAACACATG 57.476 40.909 0.00 0.00 0.00 3.21
2021 2672 3.708631 ACCAAATCATCAACCAACCAACA 59.291 39.130 0.00 0.00 0.00 3.33
2069 2720 4.792521 GCTAGCTAGCTTAATGAGGCTA 57.207 45.455 33.71 0.00 45.62 3.93
2315 2966 1.078143 GCTGCGAAGATCCCCAACT 60.078 57.895 0.00 0.00 0.00 3.16
2345 2996 1.918262 AGCTGATTTCCCCTCACATCA 59.082 47.619 0.00 0.00 0.00 3.07
2349 3000 3.350219 TGTAAGCTGATTTCCCCTCAC 57.650 47.619 0.00 0.00 0.00 3.51
2476 3127 7.361286 GGTCATTTGTCTCAATCAGTAACTTCC 60.361 40.741 0.00 0.00 0.00 3.46
2487 3138 5.125097 GCTCATCAAGGTCATTTGTCTCAAT 59.875 40.000 0.00 0.00 0.00 2.57
2489 3140 4.005650 GCTCATCAAGGTCATTTGTCTCA 58.994 43.478 0.00 0.00 0.00 3.27
3057 3708 0.686441 TGTACTGGACGGCAGCCTAT 60.686 55.000 10.54 0.00 0.00 2.57
3126 3777 4.077822 AGAACTGAGCCCAATTCTTCTTG 58.922 43.478 0.00 0.00 35.57 3.02
3153 3804 1.615392 CTTTTGTTGGGCCTGGAGAAG 59.385 52.381 4.53 0.00 0.00 2.85
3266 3917 1.953559 CACCGGGTCCATCACAATAG 58.046 55.000 6.32 0.00 0.00 1.73
3307 3958 2.227194 ACAACAGAAACCCGAACCATC 58.773 47.619 0.00 0.00 0.00 3.51
3308 3959 2.358322 ACAACAGAAACCCGAACCAT 57.642 45.000 0.00 0.00 0.00 3.55
3309 3960 2.435069 TCTACAACAGAAACCCGAACCA 59.565 45.455 0.00 0.00 0.00 3.67
3311 3962 4.753107 TGATTCTACAACAGAAACCCGAAC 59.247 41.667 0.00 0.00 46.29 3.95
3312 3963 4.963373 TGATTCTACAACAGAAACCCGAA 58.037 39.130 0.00 0.00 46.29 4.30
3313 3964 4.610605 TGATTCTACAACAGAAACCCGA 57.389 40.909 0.00 0.00 46.29 5.14
3314 3965 4.994852 TCTTGATTCTACAACAGAAACCCG 59.005 41.667 0.00 0.00 46.29 5.28
3375 4026 5.734720 TGACAAACCATCTCTGAAGTATCC 58.265 41.667 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.