Multiple sequence alignment - TraesCS7A01G247600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G247600 chr7A 100.000 3819 0 0 1 3819 228264284 228260466 0.000000e+00 7053.0
1 TraesCS7A01G247600 chr7A 81.343 402 65 7 1112 1505 489163067 489163466 6.160000e-83 318.0
2 TraesCS7A01G247600 chr7A 88.281 128 13 2 1256 1382 430240715 430240841 6.610000e-33 152.0
3 TraesCS7A01G247600 chr7A 81.416 113 11 7 7 119 682176817 682176715 2.440000e-12 84.2
4 TraesCS7A01G247600 chr7B 93.509 3728 144 45 122 3801 185062276 185058599 0.000000e+00 5454.0
5 TraesCS7A01G247600 chr7B 80.637 408 69 7 1112 1511 455272189 455271784 1.330000e-79 307.0
6 TraesCS7A01G247600 chr7B 88.281 128 13 2 1256 1382 376431563 376431689 6.610000e-33 152.0
7 TraesCS7A01G247600 chr7D 94.383 3276 113 38 556 3801 215096992 215093758 0.000000e+00 4964.0
8 TraesCS7A01G247600 chr7D 92.786 402 25 3 44 445 215099144 215098747 2.560000e-161 579.0
9 TraesCS7A01G247600 chr7D 81.281 406 66 7 1108 1505 438368478 438368881 1.710000e-83 320.0
10 TraesCS7A01G247600 chr7D 88.281 128 13 2 1256 1382 382256041 382256167 6.610000e-33 152.0
11 TraesCS7A01G247600 chr7D 98.039 51 1 0 490 540 215098532 215098482 5.250000e-14 89.8
12 TraesCS7A01G247600 chr2A 83.929 224 32 4 1280 1501 625957808 625958029 1.070000e-50 211.0
13 TraesCS7A01G247600 chr2A 97.619 42 1 0 1111 1152 572616091 572616050 5.290000e-09 73.1
14 TraesCS7A01G247600 chr1A 84.874 119 15 3 1 119 441756894 441756779 2.410000e-22 117.0
15 TraesCS7A01G247600 chr5D 75.000 276 56 12 1102 1372 519277273 519277540 8.670000e-22 115.0
16 TraesCS7A01G247600 chr5D 84.337 83 8 4 37 114 410248585 410248667 4.090000e-10 76.8
17 TraesCS7A01G247600 chr1B 82.645 121 15 3 1 119 457756736 457756620 6.750000e-18 102.0
18 TraesCS7A01G247600 chr5A 85.149 101 8 6 15 110 549941534 549941632 3.140000e-16 97.1
19 TraesCS7A01G247600 chr2D 97.619 42 1 0 1111 1152 417543866 417543907 5.290000e-09 73.1
20 TraesCS7A01G247600 chr2B 97.619 42 1 0 1111 1152 489418817 489418858 5.290000e-09 73.1
21 TraesCS7A01G247600 chr6A 90.196 51 5 0 69 119 605392826 605392876 2.460000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G247600 chr7A 228260466 228264284 3818 True 7053.0 7053 100.000000 1 3819 1 chr7A.!!$R1 3818
1 TraesCS7A01G247600 chr7B 185058599 185062276 3677 True 5454.0 5454 93.509000 122 3801 1 chr7B.!!$R1 3679
2 TraesCS7A01G247600 chr7D 215093758 215099144 5386 True 1877.6 4964 95.069333 44 3801 3 chr7D.!!$R1 3757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 2547 0.393537 TGCATCCACACACACACACA 60.394 50.0 0.0 0.0 0.00 3.72 F
960 2630 0.741326 CAGCTCGCTTCACCTAGCTA 59.259 55.0 0.0 0.0 43.26 3.32 F
1550 3220 1.033746 AAGGTGCGCAATGATCCAGG 61.034 55.0 14.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2506 4206 0.404040 GGTTTGGGAGGTCATGGTGA 59.596 55.000 0.00 0.0 0.00 4.02 R
2540 4240 1.152368 GGCCCTGGCTCTGCATTAT 59.848 57.895 8.29 0.0 41.60 1.28 R
3017 4718 0.949397 CTCCAATGATCCCATGCACG 59.051 55.000 0.00 0.0 32.36 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.931838 TGAGACCTTACATTAAGATTCGTGT 58.068 36.000 0.00 0.00 38.02 4.49
25 26 8.058667 TGAGACCTTACATTAAGATTCGTGTA 57.941 34.615 0.00 0.00 38.02 2.90
26 27 8.525316 TGAGACCTTACATTAAGATTCGTGTAA 58.475 33.333 0.00 0.00 38.02 2.41
27 28 9.362539 GAGACCTTACATTAAGATTCGTGTAAA 57.637 33.333 0.00 0.00 36.82 2.01
28 29 9.886132 AGACCTTACATTAAGATTCGTGTAAAT 57.114 29.630 0.00 0.00 36.82 1.40
76 77 7.971722 TCTCTTGCATGTTGTATCATTTGATTG 59.028 33.333 0.00 0.00 36.05 2.67
95 96 9.748708 TTTGATTGAGACTTGGTTAAATTTCAG 57.251 29.630 0.00 0.00 0.00 3.02
101 102 6.289064 AGACTTGGTTAAATTTCAGTCGACT 58.711 36.000 13.58 13.58 0.00 4.18
112 113 2.923605 CAGTCGACTGAGACCTAACC 57.076 55.000 36.73 0.00 46.59 2.85
114 115 2.162608 CAGTCGACTGAGACCTAACCAG 59.837 54.545 36.73 7.99 46.59 4.00
117 118 1.473278 CGACTGAGACCTAACCAGACC 59.527 57.143 0.00 0.00 0.00 3.85
119 120 1.433592 ACTGAGACCTAACCAGACCCT 59.566 52.381 0.00 0.00 0.00 4.34
120 121 1.827969 CTGAGACCTAACCAGACCCTG 59.172 57.143 0.00 0.00 0.00 4.45
135 136 2.041216 GACCCTGGTAGGAAACAATGGT 59.959 50.000 0.00 0.00 37.67 3.55
205 206 0.740868 TGAACACGCCATGCTAGAGC 60.741 55.000 0.00 0.00 42.50 4.09
306 307 2.285977 CCCTGAAATAAGTACACGGCC 58.714 52.381 0.00 0.00 0.00 6.13
364 365 7.205297 TGCCTGAAATTAATACTACTCGTACC 58.795 38.462 0.00 0.00 0.00 3.34
399 400 3.074412 AGGTACACGATCTTTTGCCTTG 58.926 45.455 0.00 0.00 0.00 3.61
438 439 1.398041 CGCAGTGTATGTGTTCCCATG 59.602 52.381 0.00 0.00 34.56 3.66
465 466 4.447389 TGTGCATACGTACATGTCATATGC 59.553 41.667 26.69 26.69 45.40 3.14
573 2239 1.634702 GTGGCTCTAGTTTGCGAGAG 58.365 55.000 0.00 0.00 44.15 3.20
591 2257 0.769247 AGGGTTTTAGCCTTCACGGT 59.231 50.000 0.00 0.00 45.25 4.83
769 2435 1.115467 AATACAGGCGGTGAGAGAGG 58.885 55.000 0.00 0.00 0.00 3.69
873 2543 1.596603 CTCTTGCATCCACACACACA 58.403 50.000 0.00 0.00 0.00 3.72
874 2544 1.265095 CTCTTGCATCCACACACACAC 59.735 52.381 0.00 0.00 0.00 3.82
875 2545 1.023502 CTTGCATCCACACACACACA 58.976 50.000 0.00 0.00 0.00 3.72
876 2546 0.737804 TTGCATCCACACACACACAC 59.262 50.000 0.00 0.00 0.00 3.82
877 2547 0.393537 TGCATCCACACACACACACA 60.394 50.000 0.00 0.00 0.00 3.72
915 2585 0.896940 AGCAGCCCATTTCACACTGG 60.897 55.000 0.00 0.00 0.00 4.00
916 2586 1.588082 CAGCCCATTTCACACTGGC 59.412 57.895 0.00 0.00 42.48 4.85
917 2587 1.153524 AGCCCATTTCACACTGGCA 59.846 52.632 0.00 0.00 44.60 4.92
918 2588 1.181098 AGCCCATTTCACACTGGCAC 61.181 55.000 0.00 0.00 44.60 5.01
919 2589 1.966762 CCCATTTCACACTGGCACC 59.033 57.895 0.00 0.00 0.00 5.01
920 2590 0.827089 CCCATTTCACACTGGCACCA 60.827 55.000 0.00 0.00 0.00 4.17
960 2630 0.741326 CAGCTCGCTTCACCTAGCTA 59.259 55.000 0.00 0.00 43.26 3.32
977 2647 4.837093 AGCTAGTAGAGAGTGTGAGAGT 57.163 45.455 0.00 0.00 0.00 3.24
979 2649 3.625764 GCTAGTAGAGAGTGTGAGAGTGG 59.374 52.174 0.00 0.00 0.00 4.00
980 2650 4.624364 GCTAGTAGAGAGTGTGAGAGTGGA 60.624 50.000 0.00 0.00 0.00 4.02
993 2663 2.112297 GTGGACGTTGAAGGGCCA 59.888 61.111 8.65 8.65 0.00 5.36
1019 2689 3.982241 GCACCAGCAACAGCACCC 61.982 66.667 0.00 0.00 41.58 4.61
1224 2894 2.797278 GGACATCGCGGAGGTGGAT 61.797 63.158 6.13 0.00 34.56 3.41
1550 3220 1.033746 AAGGTGCGCAATGATCCAGG 61.034 55.000 14.00 0.00 0.00 4.45
1578 3248 1.939934 TGCACGCTATTATTGCTCCAC 59.060 47.619 0.00 0.00 37.16 4.02
1598 3273 4.286910 CACCCGTGAACATTTTGTTACTG 58.713 43.478 0.00 0.00 41.28 2.74
1659 3334 1.071436 GTGAGCTCGTCGTTGAAACAC 60.071 52.381 9.64 0.00 0.00 3.32
1797 3472 6.039941 TGACATATGCATGCAGATTGATTTGA 59.960 34.615 24.64 2.90 35.39 2.69
1843 3518 7.717875 TGTAGCCTAGTACACTTTTGTTCATTT 59.282 33.333 0.00 0.00 37.15 2.32
1972 3654 4.660352 GCTAGCTAGCGTTATACGTACT 57.340 45.455 28.89 0.00 44.73 2.73
1973 3655 5.769967 GCTAGCTAGCGTTATACGTACTA 57.230 43.478 28.89 0.00 44.73 1.82
1974 3656 5.784321 GCTAGCTAGCGTTATACGTACTAG 58.216 45.833 28.89 11.08 44.73 2.57
1975 3657 5.347364 GCTAGCTAGCGTTATACGTACTAGT 59.653 44.000 28.89 0.00 44.73 2.57
1976 3658 6.528423 GCTAGCTAGCGTTATACGTACTAGTA 59.472 42.308 28.89 0.00 44.73 1.82
2093 3783 2.553904 CCATTGATATCTCCCTGTGCCC 60.554 54.545 3.98 0.00 0.00 5.36
2094 3784 1.140312 TTGATATCTCCCTGTGCCCC 58.860 55.000 3.98 0.00 0.00 5.80
2105 3795 2.233271 CCTGTGCCCCATGCTTATAAG 58.767 52.381 8.20 8.20 42.00 1.73
2110 3800 4.774726 TGTGCCCCATGCTTATAAGAAAAA 59.225 37.500 16.85 0.00 42.00 1.94
2239 3939 5.892119 AGATCACAATCCATGCAAAAGAGAT 59.108 36.000 0.00 0.00 31.78 2.75
2245 3945 9.806203 CACAATCCATGCAAAAGAGATTATTAA 57.194 29.630 0.00 0.00 0.00 1.40
2315 4015 6.827641 TGTGAGCGATGTTTTGAACTTATAC 58.172 36.000 0.00 0.00 0.00 1.47
2506 4206 2.122768 CCTAGTCAGCTCATCCCCTTT 58.877 52.381 0.00 0.00 0.00 3.11
2533 4233 1.352622 ACCTCCCAAACCTGCAGTCA 61.353 55.000 13.81 0.00 0.00 3.41
2540 4240 0.482446 AAACCTGCAGTCATCCCCAA 59.518 50.000 13.81 0.00 0.00 4.12
2862 4562 1.457831 GGCTACCCTCCCATCTCGT 60.458 63.158 0.00 0.00 0.00 4.18
2914 4614 3.740832 TGATTAGTCAAGTTGCGAGTGTG 59.259 43.478 0.00 0.00 0.00 3.82
2915 4615 3.446310 TTAGTCAAGTTGCGAGTGTGA 57.554 42.857 0.00 0.00 0.00 3.58
2916 4616 2.533266 AGTCAAGTTGCGAGTGTGAT 57.467 45.000 0.00 0.00 0.00 3.06
2917 4617 2.408050 AGTCAAGTTGCGAGTGTGATC 58.592 47.619 0.00 0.00 0.00 2.92
2924 4624 0.663153 TGCGAGTGTGATCGATCGAT 59.337 50.000 29.76 29.76 45.56 3.59
2967 4668 3.408634 TGTTTTCCCTTGTTCTCCGATC 58.591 45.455 0.00 0.00 0.00 3.69
2978 4679 3.319405 TGTTCTCCGATCAATCCTCTAGC 59.681 47.826 0.00 0.00 0.00 3.42
3017 4718 4.333649 TCATATGTAGTGCTTTGCTTGCTC 59.666 41.667 1.90 0.00 0.00 4.26
3060 4761 3.456644 AGTAGGAGACTAGCTAGCACTGA 59.543 47.826 20.91 5.70 45.49 3.41
3084 4785 4.830046 ACTACTAATCTCGTGATCCATGCT 59.170 41.667 0.00 0.00 31.51 3.79
3175 4876 4.700268 TTGCTTTTCACATGCACGATAT 57.300 36.364 0.00 0.00 35.34 1.63
3176 4877 5.809719 TTGCTTTTCACATGCACGATATA 57.190 34.783 0.00 0.00 35.34 0.86
3214 4920 3.223423 CACTAGCAGTGTCGATGAGTT 57.777 47.619 7.80 0.00 41.19 3.01
3279 4985 2.403252 ATTGTAGTGCAGTAGCCACC 57.597 50.000 0.18 0.00 41.13 4.61
3327 5034 3.303495 CGCTTGTGACTCCTACAATAACG 59.697 47.826 0.00 0.00 37.41 3.18
3362 5078 0.683179 AGATGCCCCTTTTTACCGGC 60.683 55.000 0.00 0.00 41.99 6.13
3371 5087 3.146847 CCTTTTTACCGGCAGAGAACTT 58.853 45.455 0.00 0.00 0.00 2.66
3384 5100 7.142680 CGGCAGAGAACTTTTAAAAATGGTTA 58.857 34.615 1.66 0.00 0.00 2.85
3386 5102 8.925700 GGCAGAGAACTTTTAAAAATGGTTATG 58.074 33.333 1.66 4.91 0.00 1.90
3406 5122 1.667724 GGACAACATCATTCAGCTCCG 59.332 52.381 0.00 0.00 0.00 4.63
3423 5139 1.202964 TCCGACAACTAGGTGTGGAGA 60.203 52.381 23.02 15.27 30.31 3.71
3491 5212 4.761739 ACATTCCTTGTTGTGTAGTGGATG 59.238 41.667 0.00 0.00 33.74 3.51
3801 5526 2.040213 GATGATGCGTGCGTGGAAGG 62.040 60.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.931838 ACACGAATCTTAATGTAAGGTCTCA 58.068 36.000 0.00 0.00 36.45 3.27
1 2 8.922058 TTACACGAATCTTAATGTAAGGTCTC 57.078 34.615 0.00 0.00 33.67 3.36
2 3 9.886132 ATTTACACGAATCTTAATGTAAGGTCT 57.114 29.630 0.00 0.00 38.42 3.85
69 70 9.748708 CTGAAATTTAACCAAGTCTCAATCAAA 57.251 29.630 0.00 0.00 0.00 2.69
76 77 6.424207 AGTCGACTGAAATTTAACCAAGTCTC 59.576 38.462 19.30 0.00 0.00 3.36
95 96 2.162008 GTCTGGTTAGGTCTCAGTCGAC 59.838 54.545 7.70 7.70 0.00 4.20
101 102 1.552486 CCAGGGTCTGGTTAGGTCTCA 60.552 57.143 5.82 0.00 45.82 3.27
112 113 3.347216 CATTGTTTCCTACCAGGGTCTG 58.653 50.000 0.00 0.00 35.59 3.51
114 115 2.041216 ACCATTGTTTCCTACCAGGGTC 59.959 50.000 0.00 0.00 31.56 4.46
117 118 2.819608 CACACCATTGTTTCCTACCAGG 59.180 50.000 0.00 0.00 31.66 4.45
119 120 2.235016 GCACACCATTGTTTCCTACCA 58.765 47.619 0.00 0.00 31.66 3.25
120 121 1.199097 CGCACACCATTGTTTCCTACC 59.801 52.381 0.00 0.00 31.66 3.18
135 136 1.006086 CTAATTCCATCGTGCGCACA 58.994 50.000 37.03 24.97 0.00 4.57
183 184 2.679837 CTCTAGCATGGCGTGTTCAAAT 59.320 45.455 8.75 0.00 0.00 2.32
306 307 1.745087 ACACAAGTTTCTGCCACTGTG 59.255 47.619 0.00 0.00 33.30 3.66
438 439 4.364860 TGACATGTACGTATGCACATACC 58.635 43.478 13.71 2.79 40.31 2.73
465 466 1.910819 GCATCCATTACAAACGCGTTG 59.089 47.619 27.34 20.73 43.43 4.10
573 2239 1.162698 GACCGTGAAGGCTAAAACCC 58.837 55.000 0.00 0.00 46.52 4.11
591 2257 2.562296 ACTTGATGGAGCTTAAGGGGA 58.438 47.619 4.29 0.00 0.00 4.81
797 2467 3.736252 CGTAGAGAGACAACAGTGTTTGG 59.264 47.826 5.57 0.00 38.41 3.28
873 2543 0.250727 GGCTATGGTGGTGTGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
874 2544 0.250684 TGGCTATGGTGGTGTGTGTG 60.251 55.000 0.00 0.00 0.00 3.82
875 2545 0.476338 TTGGCTATGGTGGTGTGTGT 59.524 50.000 0.00 0.00 0.00 3.72
876 2546 1.167851 CTTGGCTATGGTGGTGTGTG 58.832 55.000 0.00 0.00 0.00 3.82
877 2547 1.003580 CTCTTGGCTATGGTGGTGTGT 59.996 52.381 0.00 0.00 0.00 3.72
900 2570 1.290009 GTGCCAGTGTGAAATGGGC 59.710 57.895 0.00 0.00 44.82 5.36
960 2630 3.681593 GTCCACTCTCACACTCTCTACT 58.318 50.000 0.00 0.00 0.00 2.57
977 2647 2.429930 CTGGCCCTTCAACGTCCA 59.570 61.111 0.00 0.00 0.00 4.02
979 2649 3.423154 CGCTGGCCCTTCAACGTC 61.423 66.667 0.00 0.00 0.00 4.34
1002 2672 3.982241 GGGTGCTGTTGCTGGTGC 61.982 66.667 0.00 0.00 40.48 5.01
1003 2673 3.663176 CGGGTGCTGTTGCTGGTG 61.663 66.667 0.00 0.00 40.48 4.17
1006 2676 4.332637 GTGCGGGTGCTGTTGCTG 62.333 66.667 0.00 0.00 43.34 4.41
1224 2894 4.373116 GGCTCGCACCGGTTCAGA 62.373 66.667 2.97 3.47 0.00 3.27
1550 3220 4.342772 CAATAATAGCGTGCAACCAACTC 58.657 43.478 0.00 0.00 0.00 3.01
1578 3248 3.004315 AGCAGTAACAAAATGTTCACGGG 59.996 43.478 0.00 0.00 40.22 5.28
1598 3273 9.928236 CTAGAGAATGTATTTAGCAAAAAGAGC 57.072 33.333 0.00 0.00 0.00 4.09
1659 3334 2.917933 TCTTGACCACTCAACTGTTGG 58.082 47.619 19.55 12.79 32.68 3.77
1739 3414 2.651137 GCAATGCAAGCACACGCAC 61.651 57.895 0.00 0.00 41.79 5.34
1843 3518 0.745486 CAGGCACCAGCATCGAATGA 60.745 55.000 0.00 0.00 44.61 2.57
1971 3653 6.749118 GGAACAAACACGTACCAGTATACTAG 59.251 42.308 4.74 0.08 0.00 2.57
1972 3654 6.350110 GGGAACAAACACGTACCAGTATACTA 60.350 42.308 4.74 0.00 0.00 1.82
1973 3655 5.473039 GGAACAAACACGTACCAGTATACT 58.527 41.667 0.00 0.00 0.00 2.12
1974 3656 4.627035 GGGAACAAACACGTACCAGTATAC 59.373 45.833 0.00 0.00 0.00 1.47
1975 3657 4.527816 AGGGAACAAACACGTACCAGTATA 59.472 41.667 0.00 0.00 0.00 1.47
1976 3658 3.325716 AGGGAACAAACACGTACCAGTAT 59.674 43.478 0.00 0.00 0.00 2.12
2013 3702 1.532505 CGAGCCATGCATGCAAAGTAC 60.533 52.381 26.68 14.89 0.00 2.73
2014 3703 0.734309 CGAGCCATGCATGCAAAGTA 59.266 50.000 26.68 0.00 0.00 2.24
2015 3704 0.961857 TCGAGCCATGCATGCAAAGT 60.962 50.000 26.68 9.78 0.00 2.66
2093 3783 4.405358 TGGCCCTTTTTCTTATAAGCATGG 59.595 41.667 7.67 6.01 0.00 3.66
2094 3784 5.596836 TGGCCCTTTTTCTTATAAGCATG 57.403 39.130 7.67 0.00 0.00 4.06
2264 3964 3.897141 TGTACGAGCCAACATATCCAA 57.103 42.857 0.00 0.00 0.00 3.53
2276 3976 4.915667 TCGCTCACAAATATATGTACGAGC 59.084 41.667 12.69 12.69 41.94 5.03
2277 3977 6.582672 ACATCGCTCACAAATATATGTACGAG 59.417 38.462 0.00 0.00 36.46 4.18
2315 4015 6.543465 TCCTGCAAAAAGTATATCATGGACAG 59.457 38.462 0.00 0.00 0.00 3.51
2506 4206 0.404040 GGTTTGGGAGGTCATGGTGA 59.596 55.000 0.00 0.00 0.00 4.02
2533 4233 1.500303 TGGCTCTGCATTATTGGGGAT 59.500 47.619 0.00 0.00 0.00 3.85
2540 4240 1.152368 GGCCCTGGCTCTGCATTAT 59.848 57.895 8.29 0.00 41.60 1.28
2635 4335 4.959839 GGGAAAGGGAAATATGCTTGGTTA 59.040 41.667 0.00 0.00 0.00 2.85
2854 4554 3.629058 ACATAACGATCGAACGAGATGG 58.371 45.455 24.34 9.11 35.26 3.51
2862 4562 2.616960 AGCTGCAACATAACGATCGAA 58.383 42.857 24.34 9.88 0.00 3.71
2914 4614 6.804295 AGTGCTTGTCTAAATATCGATCGATC 59.196 38.462 32.50 17.29 36.17 3.69
2915 4615 6.682746 AGTGCTTGTCTAAATATCGATCGAT 58.317 36.000 31.39 31.39 38.54 3.59
2916 4616 6.073327 AGTGCTTGTCTAAATATCGATCGA 57.927 37.500 21.86 21.86 0.00 3.59
2917 4617 6.576021 CAAGTGCTTGTCTAAATATCGATCG 58.424 40.000 9.36 9.36 35.92 3.69
2978 4679 8.462811 ACTACATATGATCATAAGCTACGGAAG 58.537 37.037 19.03 8.99 0.00 3.46
3017 4718 0.949397 CTCCAATGATCCCATGCACG 59.051 55.000 0.00 0.00 32.36 5.34
3024 4725 4.525100 GTCTCCTACTACTCCAATGATCCC 59.475 50.000 0.00 0.00 0.00 3.85
3060 4761 5.303078 AGCATGGATCACGAGATTAGTAGTT 59.697 40.000 0.00 0.00 33.72 2.24
3084 4785 4.503910 GACCATAGTGCATGTGAGTACAA 58.496 43.478 0.00 0.00 40.84 2.41
3175 4876 9.292195 TGCTAGTGCTACATACAGTACATATTA 57.708 33.333 0.00 0.00 40.48 0.98
3176 4877 8.178313 TGCTAGTGCTACATACAGTACATATT 57.822 34.615 0.00 0.00 40.48 1.28
3214 4920 9.649167 GAAGCAGTTACTACAAGTTTATAAGGA 57.351 33.333 0.00 0.00 0.00 3.36
3232 4938 5.841957 ACTTTTGAACATGAGAAGCAGTT 57.158 34.783 0.00 0.00 0.00 3.16
3311 5018 5.654603 ACATCACGTTATTGTAGGAGTCA 57.345 39.130 0.00 0.00 0.00 3.41
3357 5073 5.508994 CCATTTTTAAAAGTTCTCTGCCGGT 60.509 40.000 1.90 0.00 0.00 5.28
3384 5100 3.285484 GGAGCTGAATGATGTTGTCCAT 58.715 45.455 0.00 0.00 36.13 3.41
3386 5102 1.667724 CGGAGCTGAATGATGTTGTCC 59.332 52.381 0.00 0.00 0.00 4.02
3406 5122 2.028112 TGCATCTCCACACCTAGTTGTC 60.028 50.000 0.00 0.00 0.00 3.18
3491 5212 1.137872 AGATCTCATGTCAGGAACCGC 59.862 52.381 0.00 0.00 0.00 5.68
3736 5461 4.373116 AGCCCGTCACGTCGCAAT 62.373 61.111 8.99 0.00 0.00 3.56
3755 5480 0.461961 CTACTACCCTGTGAGGCTGC 59.538 60.000 0.00 0.00 32.73 5.25
3769 5494 3.149981 CGCATCATCACTCCTCCTACTA 58.850 50.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.