Multiple sequence alignment - TraesCS7A01G247400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G247400 chr7A 100.000 2688 0 0 1 2688 228030380 228033067 0.000000e+00 4964.0
1 TraesCS7A01G247400 chr7A 97.616 923 21 1 1310 2232 228031273 228030352 0.000000e+00 1581.0
2 TraesCS7A01G247400 chr7A 97.654 895 20 1 1 894 228032583 228031689 0.000000e+00 1535.0
3 TraesCS7A01G247400 chr7A 93.231 458 31 0 2231 2688 256185230 256185687 0.000000e+00 675.0
4 TraesCS7A01G247400 chr2A 98.348 1271 21 0 961 2231 354240618 354241888 0.000000e+00 2231.0
5 TraesCS7A01G247400 chr2A 97.188 1280 27 1 961 2231 273008087 273006808 0.000000e+00 2156.0
6 TraesCS7A01G247400 chr2A 97.765 895 19 1 1 894 354241861 354240967 0.000000e+00 1541.0
7 TraesCS7A01G247400 chr2A 96.128 904 25 2 1 894 273006835 273007738 0.000000e+00 1467.0
8 TraesCS7A01G247400 chr6B 96.956 1281 29 4 961 2232 644278992 644277713 0.000000e+00 2141.0
9 TraesCS7A01G247400 chr6B 96.239 904 23 5 1 894 644277741 644278643 0.000000e+00 1471.0
10 TraesCS7A01G247400 chr6B 95.349 43 2 0 900 942 87836331 87836373 4.800000e-08 69.4
11 TraesCS7A01G247400 chr4B 96.250 1280 38 2 961 2231 8632582 8631304 0.000000e+00 2089.0
12 TraesCS7A01G247400 chr4B 95.686 904 28 5 1 894 8631331 8632233 0.000000e+00 1443.0
13 TraesCS7A01G247400 chr4B 95.238 42 2 0 901 942 99927706 99927665 1.730000e-07 67.6
14 TraesCS7A01G247400 chr7B 90.560 1303 78 22 961 2237 575747522 575746239 0.000000e+00 1683.0
15 TraesCS7A01G247400 chr7B 90.140 1288 74 22 961 2234 24224364 24223116 0.000000e+00 1626.0
16 TraesCS7A01G247400 chr7B 88.382 921 61 20 1 894 575746272 575747173 0.000000e+00 1066.0
17 TraesCS7A01G247400 chr7B 87.956 905 56 19 1 890 24223146 24224012 0.000000e+00 1018.0
18 TraesCS7A01G247400 chr3B 90.649 1294 76 22 961 2228 533098498 533099772 0.000000e+00 1677.0
19 TraesCS7A01G247400 chr3B 87.731 921 67 20 1 894 533099748 533098847 0.000000e+00 1033.0
20 TraesCS7A01G247400 chr2B 89.110 1304 76 27 961 2237 634596614 634597878 0.000000e+00 1561.0
21 TraesCS7A01G247400 chr2B 87.296 921 53 24 1 894 634597845 634596962 0.000000e+00 994.0
22 TraesCS7A01G247400 chr2B 79.646 113 20 3 2114 2226 137985053 137985162 7.980000e-11 78.7
23 TraesCS7A01G247400 chr2B 97.436 39 1 0 900 938 57277849 57277887 1.730000e-07 67.6
24 TraesCS7A01G247400 chr4A 93.886 458 28 0 2231 2688 532133375 532133832 0.000000e+00 691.0
25 TraesCS7A01G247400 chr4A 93.231 458 31 0 2231 2688 319627894 319627437 0.000000e+00 675.0
26 TraesCS7A01G247400 chr4A 93.013 458 32 0 2231 2688 211260833 211261290 0.000000e+00 669.0
27 TraesCS7A01G247400 chr4A 92.795 458 33 0 2231 2688 306861651 306861194 0.000000e+00 664.0
28 TraesCS7A01G247400 chr5A 93.246 459 28 3 2231 2688 523058043 523058499 0.000000e+00 673.0
29 TraesCS7A01G247400 chr5A 92.795 458 32 1 2231 2688 208621510 208621966 0.000000e+00 662.0
30 TraesCS7A01G247400 chr3D 93.043 460 32 0 2229 2688 442717713 442718172 0.000000e+00 673.0
31 TraesCS7A01G247400 chr3D 95.349 43 2 0 900 942 486267982 486268024 4.800000e-08 69.4
32 TraesCS7A01G247400 chr3A 92.795 458 32 1 2231 2688 258337280 258336824 0.000000e+00 662.0
33 TraesCS7A01G247400 chr3A 95.556 45 2 0 900 944 239010061 239010017 3.710000e-09 73.1
34 TraesCS7A01G247400 chr3A 95.556 45 2 0 900 944 355807254 355807298 3.710000e-09 73.1
35 TraesCS7A01G247400 chrUn 95.349 43 2 0 900 942 29153838 29153796 4.800000e-08 69.4
36 TraesCS7A01G247400 chr5D 95.349 43 2 0 900 942 465493778 465493820 4.800000e-08 69.4
37 TraesCS7A01G247400 chr4D 95.238 42 2 0 900 941 422977174 422977133 1.730000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G247400 chr7A 228030380 228033067 2687 False 4964 4964 100.000 1 2688 1 chr7A.!!$F1 2687
1 TraesCS7A01G247400 chr7A 228030352 228032583 2231 True 1558 1581 97.635 1 2232 2 chr7A.!!$R1 2231
2 TraesCS7A01G247400 chr2A 354240618 354241888 1270 False 2231 2231 98.348 961 2231 1 chr2A.!!$F2 1270
3 TraesCS7A01G247400 chr2A 273006808 273008087 1279 True 2156 2156 97.188 961 2231 1 chr2A.!!$R1 1270
4 TraesCS7A01G247400 chr2A 354240967 354241861 894 True 1541 1541 97.765 1 894 1 chr2A.!!$R2 893
5 TraesCS7A01G247400 chr2A 273006835 273007738 903 False 1467 1467 96.128 1 894 1 chr2A.!!$F1 893
6 TraesCS7A01G247400 chr6B 644277713 644278992 1279 True 2141 2141 96.956 961 2232 1 chr6B.!!$R1 1271
7 TraesCS7A01G247400 chr6B 644277741 644278643 902 False 1471 1471 96.239 1 894 1 chr6B.!!$F2 893
8 TraesCS7A01G247400 chr4B 8631304 8632582 1278 True 2089 2089 96.250 961 2231 1 chr4B.!!$R1 1270
9 TraesCS7A01G247400 chr4B 8631331 8632233 902 False 1443 1443 95.686 1 894 1 chr4B.!!$F1 893
10 TraesCS7A01G247400 chr7B 575746239 575747522 1283 True 1683 1683 90.560 961 2237 1 chr7B.!!$R2 1276
11 TraesCS7A01G247400 chr7B 24223116 24224364 1248 True 1626 1626 90.140 961 2234 1 chr7B.!!$R1 1273
12 TraesCS7A01G247400 chr7B 575746272 575747173 901 False 1066 1066 88.382 1 894 1 chr7B.!!$F2 893
13 TraesCS7A01G247400 chr7B 24223146 24224012 866 False 1018 1018 87.956 1 890 1 chr7B.!!$F1 889
14 TraesCS7A01G247400 chr3B 533098498 533099772 1274 False 1677 1677 90.649 961 2228 1 chr3B.!!$F1 1267
15 TraesCS7A01G247400 chr3B 533098847 533099748 901 True 1033 1033 87.731 1 894 1 chr3B.!!$R1 893
16 TraesCS7A01G247400 chr2B 634596614 634597878 1264 False 1561 1561 89.110 961 2237 1 chr2B.!!$F3 1276
17 TraesCS7A01G247400 chr2B 634596962 634597845 883 True 994 994 87.296 1 894 1 chr2B.!!$R1 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 973 1.594833 GGTGACGACCTACATGCCA 59.405 57.895 0.0 0.0 39.47 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2727 0.035056 CTCCAGGAATTTGAGGCGGT 60.035 55.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.499357 GGAATACGGATAGCGGGTGATATC 60.499 50.000 0.00 0.00 41.66 1.63
169 170 8.814931 ACTTGAATTGAATAATTGGTCCATCAA 58.185 29.630 7.19 7.19 36.66 2.57
226 227 6.403866 ACCATGTAAGCACTTGAATTGAAA 57.596 33.333 0.00 0.00 32.83 2.69
478 495 4.201353 CGACCATCACGCAAAATAAAAACG 60.201 41.667 0.00 0.00 0.00 3.60
666 694 8.396390 CCTCATCTTCAACATCTTGATTTGTAG 58.604 37.037 0.00 0.00 36.26 2.74
677 705 7.449704 ACATCTTGATTTGTAGGAGCTCTTTTT 59.550 33.333 14.64 0.00 0.00 1.94
894 940 8.075574 TGTTGAACATCACATAAACAAGATCAC 58.924 33.333 0.00 0.00 0.00 3.06
895 941 7.742556 TGAACATCACATAAACAAGATCACA 57.257 32.000 0.00 0.00 0.00 3.58
896 942 8.164058 TGAACATCACATAAACAAGATCACAA 57.836 30.769 0.00 0.00 0.00 3.33
897 943 8.291740 TGAACATCACATAAACAAGATCACAAG 58.708 33.333 0.00 0.00 0.00 3.16
898 944 7.750229 ACATCACATAAACAAGATCACAAGT 57.250 32.000 0.00 0.00 0.00 3.16
900 946 7.445096 ACATCACATAAACAAGATCACAAGTCA 59.555 33.333 0.00 0.00 0.00 3.41
902 948 7.809665 TCACATAAACAAGATCACAAGTCATG 58.190 34.615 0.00 0.00 0.00 3.07
903 949 7.025365 CACATAAACAAGATCACAAGTCATGG 58.975 38.462 0.00 0.00 0.00 3.66
904 950 4.510038 AAACAAGATCACAAGTCATGGC 57.490 40.909 0.00 0.00 0.00 4.40
906 952 1.747355 CAAGATCACAAGTCATGGCCC 59.253 52.381 0.00 0.00 0.00 5.80
908 954 1.718757 GATCACAAGTCATGGCCCGC 61.719 60.000 0.00 0.00 0.00 6.13
909 955 3.803082 CACAAGTCATGGCCCGCG 61.803 66.667 0.00 0.00 0.00 6.46
927 973 1.594833 GGTGACGACCTACATGCCA 59.405 57.895 0.00 0.00 39.47 4.92
930 976 2.159014 GGTGACGACCTACATGCCATTA 60.159 50.000 0.00 0.00 39.47 1.90
936 1007 4.056050 CGACCTACATGCCATTAAGTACC 58.944 47.826 0.00 0.00 0.00 3.34
945 1016 6.440328 ACATGCCATTAAGTACCTTCCATTTT 59.560 34.615 0.00 0.00 0.00 1.82
946 1017 6.926630 TGCCATTAAGTACCTTCCATTTTT 57.073 33.333 0.00 0.00 0.00 1.94
1614 1895 5.090139 AGAAGAGGATGAGAACCAAGAAGA 58.910 41.667 0.00 0.00 0.00 2.87
1973 2271 6.980593 TGATATGGTTGCCTATTTGCATAAC 58.019 36.000 0.00 0.00 41.70 1.89
1975 2273 5.937975 ATGGTTGCCTATTTGCATAACTT 57.062 34.783 0.00 0.00 41.70 2.66
2178 2476 0.966920 CACCCGCTATCCGTATTCCT 59.033 55.000 0.00 0.00 34.38 3.36
2179 2477 1.343465 CACCCGCTATCCGTATTCCTT 59.657 52.381 0.00 0.00 34.38 3.36
2189 2487 1.202336 CCGTATTCCTTTACGCCGACT 60.202 52.381 0.00 0.00 42.73 4.18
2206 2504 2.481276 CGACTTCAATCCGCTATCACCA 60.481 50.000 0.00 0.00 0.00 4.17
2237 2535 5.221048 CCGCTATTTAAAATCTTGGTCCCAG 60.221 44.000 0.00 0.00 0.00 4.45
2238 2536 5.357032 CGCTATTTAAAATCTTGGTCCCAGT 59.643 40.000 0.00 0.00 0.00 4.00
2239 2537 6.540914 CGCTATTTAAAATCTTGGTCCCAGTA 59.459 38.462 0.00 0.00 0.00 2.74
2240 2538 7.228706 CGCTATTTAAAATCTTGGTCCCAGTAT 59.771 37.037 0.00 0.00 0.00 2.12
2241 2539 9.569122 GCTATTTAAAATCTTGGTCCCAGTATA 57.431 33.333 0.00 0.00 0.00 1.47
2244 2542 8.801882 TTTAAAATCTTGGTCCCAGTATACTG 57.198 34.615 23.58 23.58 43.40 2.74
2245 2543 6.636454 AAAATCTTGGTCCCAGTATACTGA 57.364 37.500 30.41 11.87 46.59 3.41
2246 2544 5.878406 AATCTTGGTCCCAGTATACTGAG 57.122 43.478 30.41 20.03 46.59 3.35
2247 2545 4.603094 TCTTGGTCCCAGTATACTGAGA 57.397 45.455 30.41 21.99 46.59 3.27
2248 2546 4.279145 TCTTGGTCCCAGTATACTGAGAC 58.721 47.826 29.71 29.71 46.80 3.36
2252 2550 3.899726 GTCCCAGTATACTGAGACCAGA 58.100 50.000 28.23 15.17 43.32 3.86
2253 2551 4.279145 GTCCCAGTATACTGAGACCAGAA 58.721 47.826 28.23 2.29 43.32 3.02
2254 2552 4.098196 GTCCCAGTATACTGAGACCAGAAC 59.902 50.000 28.23 10.15 43.32 3.01
2255 2553 4.023980 CCCAGTATACTGAGACCAGAACA 58.976 47.826 30.41 0.00 46.59 3.18
2256 2554 4.466370 CCCAGTATACTGAGACCAGAACAA 59.534 45.833 30.41 0.00 46.59 2.83
2257 2555 5.411781 CCAGTATACTGAGACCAGAACAAC 58.588 45.833 30.41 0.00 46.59 3.32
2258 2556 5.186021 CCAGTATACTGAGACCAGAACAACT 59.814 44.000 30.41 0.00 46.59 3.16
2259 2557 6.295349 CCAGTATACTGAGACCAGAACAACTT 60.295 42.308 30.41 0.00 46.59 2.66
2260 2558 6.809196 CAGTATACTGAGACCAGAACAACTTC 59.191 42.308 25.83 0.00 46.59 3.01
2261 2559 6.722129 AGTATACTGAGACCAGAACAACTTCT 59.278 38.462 4.10 0.00 43.02 2.85
2262 2560 4.762289 ACTGAGACCAGAACAACTTCTT 57.238 40.909 0.00 0.00 43.02 2.52
2263 2561 4.698575 ACTGAGACCAGAACAACTTCTTC 58.301 43.478 0.00 0.00 43.02 2.87
2264 2562 3.717707 TGAGACCAGAACAACTTCTTCG 58.282 45.455 0.00 0.00 34.20 3.79
2265 2563 3.132289 TGAGACCAGAACAACTTCTTCGT 59.868 43.478 0.00 0.00 34.20 3.85
2266 2564 3.718815 AGACCAGAACAACTTCTTCGTC 58.281 45.455 0.00 0.00 34.20 4.20
2267 2565 2.470821 ACCAGAACAACTTCTTCGTCG 58.529 47.619 0.00 0.00 34.20 5.12
2268 2566 2.100252 ACCAGAACAACTTCTTCGTCGA 59.900 45.455 0.00 0.00 34.20 4.20
2269 2567 2.726760 CCAGAACAACTTCTTCGTCGAG 59.273 50.000 0.00 0.00 34.20 4.04
2270 2568 2.154007 CAGAACAACTTCTTCGTCGAGC 59.846 50.000 0.00 0.00 34.20 5.03
2271 2569 2.034812 AGAACAACTTCTTCGTCGAGCT 59.965 45.455 0.00 0.00 32.29 4.09
2272 2570 2.053282 ACAACTTCTTCGTCGAGCTC 57.947 50.000 2.73 2.73 0.00 4.09
2273 2571 1.609555 ACAACTTCTTCGTCGAGCTCT 59.390 47.619 12.85 0.00 0.00 4.09
2274 2572 2.246789 CAACTTCTTCGTCGAGCTCTC 58.753 52.381 12.85 3.96 0.00 3.20
2275 2573 1.816074 ACTTCTTCGTCGAGCTCTCT 58.184 50.000 12.85 0.00 0.00 3.10
2276 2574 2.156098 ACTTCTTCGTCGAGCTCTCTT 58.844 47.619 12.85 0.00 0.00 2.85
2277 2575 2.160813 ACTTCTTCGTCGAGCTCTCTTC 59.839 50.000 12.85 0.00 0.00 2.87
2278 2576 1.088306 TCTTCGTCGAGCTCTCTTCC 58.912 55.000 12.85 0.00 0.00 3.46
2279 2577 1.091537 CTTCGTCGAGCTCTCTTCCT 58.908 55.000 12.85 0.00 0.00 3.36
2280 2578 1.063469 CTTCGTCGAGCTCTCTTCCTC 59.937 57.143 12.85 0.00 0.00 3.71
2283 2581 2.411290 CGAGCTCTCTTCCTCGGC 59.589 66.667 12.85 0.00 45.20 5.54
2284 2582 2.811799 GAGCTCTCTTCCTCGGCC 59.188 66.667 6.43 0.00 0.00 6.13
2285 2583 2.762043 AGCTCTCTTCCTCGGCCC 60.762 66.667 0.00 0.00 0.00 5.80
2286 2584 4.214327 GCTCTCTTCCTCGGCCCG 62.214 72.222 0.00 0.00 0.00 6.13
2287 2585 3.532155 CTCTCTTCCTCGGCCCGG 61.532 72.222 1.90 0.00 0.00 5.73
2288 2586 4.377760 TCTCTTCCTCGGCCCGGT 62.378 66.667 1.90 0.00 0.00 5.28
2289 2587 2.441532 CTCTTCCTCGGCCCGGTA 60.442 66.667 1.90 0.00 0.00 4.02
2290 2588 2.441532 TCTTCCTCGGCCCGGTAG 60.442 66.667 1.90 1.20 0.00 3.18
2291 2589 2.441532 CTTCCTCGGCCCGGTAGA 60.442 66.667 1.90 0.00 0.00 2.59
2292 2590 2.037687 TTCCTCGGCCCGGTAGAA 59.962 61.111 1.90 0.89 0.00 2.10
2293 2591 2.294132 CTTCCTCGGCCCGGTAGAAC 62.294 65.000 1.90 0.00 0.00 3.01
2294 2592 2.758737 CCTCGGCCCGGTAGAACT 60.759 66.667 1.90 0.00 0.00 3.01
2295 2593 2.783288 CCTCGGCCCGGTAGAACTC 61.783 68.421 1.90 0.00 0.00 3.01
2296 2594 1.753463 CTCGGCCCGGTAGAACTCT 60.753 63.158 1.90 0.00 0.00 3.24
2297 2595 2.005960 CTCGGCCCGGTAGAACTCTG 62.006 65.000 1.90 0.00 0.00 3.35
2298 2596 2.187163 GGCCCGGTAGAACTCTGC 59.813 66.667 0.00 0.00 0.00 4.26
2299 2597 2.202756 GCCCGGTAGAACTCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
2300 2598 2.494918 CCCGGTAGAACTCTGCGG 59.505 66.667 0.00 0.00 0.00 5.69
2301 2599 2.202756 CCGGTAGAACTCTGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
2302 2600 2.571757 CGGTAGAACTCTGCGGCA 59.428 61.111 1.29 1.29 0.00 5.69
2303 2601 1.141881 CGGTAGAACTCTGCGGCAT 59.858 57.895 1.75 0.00 0.00 4.40
2304 2602 0.872021 CGGTAGAACTCTGCGGCATC 60.872 60.000 1.75 0.00 0.00 3.91
2305 2603 0.530870 GGTAGAACTCTGCGGCATCC 60.531 60.000 1.75 0.00 0.00 3.51
2316 2614 3.566261 GGCATCCGACACACTGTG 58.434 61.111 7.68 7.68 39.75 3.66
2317 2615 2.034879 GGCATCCGACACACTGTGG 61.035 63.158 13.77 3.85 37.94 4.17
2318 2616 2.034879 GCATCCGACACACTGTGGG 61.035 63.158 8.83 8.83 46.08 4.61
2319 2617 1.375908 CATCCGACACACTGTGGGG 60.376 63.158 15.48 13.31 44.99 4.96
2320 2618 1.841556 ATCCGACACACTGTGGGGT 60.842 57.895 15.48 10.86 44.99 4.95
2321 2619 0.543410 ATCCGACACACTGTGGGGTA 60.543 55.000 15.48 5.48 44.99 3.69
2322 2620 1.183030 TCCGACACACTGTGGGGTAG 61.183 60.000 15.48 10.78 44.99 3.18
2323 2621 1.292223 CGACACACTGTGGGGTAGG 59.708 63.158 15.48 3.54 37.94 3.18
2324 2622 1.469335 CGACACACTGTGGGGTAGGT 61.469 60.000 15.48 1.49 37.94 3.08
2325 2623 0.320697 GACACACTGTGGGGTAGGTC 59.679 60.000 15.48 7.03 37.94 3.85
2326 2624 0.105142 ACACACTGTGGGGTAGGTCT 60.105 55.000 15.48 0.00 37.94 3.85
2327 2625 0.321671 CACACTGTGGGGTAGGTCTG 59.678 60.000 13.09 0.00 0.00 3.51
2328 2626 1.296715 CACTGTGGGGTAGGTCTGC 59.703 63.158 0.00 0.00 0.00 4.26
2329 2627 2.283529 ACTGTGGGGTAGGTCTGCG 61.284 63.158 0.00 0.00 0.00 5.18
2330 2628 1.982395 CTGTGGGGTAGGTCTGCGA 60.982 63.158 0.00 0.00 0.00 5.10
2331 2629 1.534476 TGTGGGGTAGGTCTGCGAA 60.534 57.895 0.00 0.00 0.00 4.70
2332 2630 1.079336 GTGGGGTAGGTCTGCGAAC 60.079 63.158 0.00 0.00 0.00 3.95
2333 2631 2.183555 GGGGTAGGTCTGCGAACG 59.816 66.667 0.00 0.00 0.00 3.95
2334 2632 2.508663 GGGTAGGTCTGCGAACGC 60.509 66.667 12.33 12.33 42.35 4.84
2335 2633 2.572284 GGTAGGTCTGCGAACGCT 59.428 61.111 19.32 2.22 42.51 5.07
2336 2634 1.516603 GGTAGGTCTGCGAACGCTC 60.517 63.158 19.32 10.02 42.51 5.03
2337 2635 1.516603 GTAGGTCTGCGAACGCTCC 60.517 63.158 19.32 17.07 42.51 4.70
2338 2636 1.677966 TAGGTCTGCGAACGCTCCT 60.678 57.895 23.34 23.34 42.51 3.69
2339 2637 0.393402 TAGGTCTGCGAACGCTCCTA 60.393 55.000 19.32 20.98 42.51 2.94
2340 2638 1.226717 GGTCTGCGAACGCTCCTAG 60.227 63.158 19.32 8.99 42.51 3.02
2341 2639 1.654954 GGTCTGCGAACGCTCCTAGA 61.655 60.000 19.32 11.06 42.51 2.43
2342 2640 0.248296 GTCTGCGAACGCTCCTAGAG 60.248 60.000 19.32 7.98 42.51 2.43
2343 2641 0.392595 TCTGCGAACGCTCCTAGAGA 60.393 55.000 19.32 10.07 42.51 3.10
2344 2642 0.452184 CTGCGAACGCTCCTAGAGAA 59.548 55.000 19.32 0.00 42.51 2.87
2345 2643 0.170561 TGCGAACGCTCCTAGAGAAC 59.829 55.000 19.32 0.00 42.51 3.01
2346 2644 0.452585 GCGAACGCTCCTAGAGAACT 59.547 55.000 11.97 0.00 38.26 3.01
2347 2645 1.532298 GCGAACGCTCCTAGAGAACTC 60.532 57.143 11.97 0.00 38.26 3.01
2348 2646 1.064357 CGAACGCTCCTAGAGAACTCC 59.936 57.143 0.00 0.00 0.00 3.85
2349 2647 1.064357 GAACGCTCCTAGAGAACTCCG 59.936 57.143 0.00 0.00 0.00 4.63
2350 2648 0.252479 ACGCTCCTAGAGAACTCCGA 59.748 55.000 0.00 0.00 0.00 4.55
2351 2649 1.339824 ACGCTCCTAGAGAACTCCGAA 60.340 52.381 0.00 0.00 0.00 4.30
2352 2650 1.950909 CGCTCCTAGAGAACTCCGAAT 59.049 52.381 0.00 0.00 0.00 3.34
2353 2651 2.359531 CGCTCCTAGAGAACTCCGAATT 59.640 50.000 0.00 0.00 0.00 2.17
2354 2652 3.549221 CGCTCCTAGAGAACTCCGAATTC 60.549 52.174 0.00 0.00 0.00 2.17
2355 2653 3.549221 GCTCCTAGAGAACTCCGAATTCG 60.549 52.174 20.92 20.92 39.44 3.34
2371 2669 6.484818 CGAATTCGGGTAAGTAAAAGGAAA 57.515 37.500 20.16 0.00 35.37 3.13
2372 2670 6.540205 CGAATTCGGGTAAGTAAAAGGAAAG 58.460 40.000 20.16 0.00 35.37 2.62
2373 2671 6.148315 CGAATTCGGGTAAGTAAAAGGAAAGT 59.852 38.462 20.16 0.00 35.37 2.66
2374 2672 7.308169 CGAATTCGGGTAAGTAAAAGGAAAGTT 60.308 37.037 20.16 0.00 35.37 2.66
2375 2673 7.828508 ATTCGGGTAAGTAAAAGGAAAGTTT 57.171 32.000 0.00 0.00 0.00 2.66
2376 2674 6.866010 TCGGGTAAGTAAAAGGAAAGTTTC 57.134 37.500 7.09 7.09 0.00 2.78
2388 2686 4.590850 GGAAAGTTTCCTTCACATGCTT 57.409 40.909 24.79 0.00 46.57 3.91
2389 2687 4.301628 GGAAAGTTTCCTTCACATGCTTG 58.698 43.478 24.79 0.00 46.57 4.01
2390 2688 3.375782 AAGTTTCCTTCACATGCTTGC 57.624 42.857 0.00 0.00 0.00 4.01
2391 2689 2.590821 AGTTTCCTTCACATGCTTGCT 58.409 42.857 0.00 0.00 0.00 3.91
2392 2690 2.961062 AGTTTCCTTCACATGCTTGCTT 59.039 40.909 0.00 0.00 0.00 3.91
2393 2691 3.385755 AGTTTCCTTCACATGCTTGCTTT 59.614 39.130 0.00 0.00 0.00 3.51
2394 2692 3.374220 TTCCTTCACATGCTTGCTTTG 57.626 42.857 0.00 0.00 0.00 2.77
2395 2693 1.000060 TCCTTCACATGCTTGCTTTGC 60.000 47.619 0.00 0.00 0.00 3.68
2396 2694 1.269883 CCTTCACATGCTTGCTTTGCA 60.270 47.619 0.00 1.83 44.95 4.08
2416 2714 3.900941 CATAATGAATGCTTTACCCGCC 58.099 45.455 0.00 0.00 0.00 6.13
2417 2715 1.846007 AATGAATGCTTTACCCGCCA 58.154 45.000 0.00 0.00 0.00 5.69
2418 2716 1.102978 ATGAATGCTTTACCCGCCAC 58.897 50.000 0.00 0.00 0.00 5.01
2419 2717 0.037590 TGAATGCTTTACCCGCCACT 59.962 50.000 0.00 0.00 0.00 4.00
2420 2718 1.279558 TGAATGCTTTACCCGCCACTA 59.720 47.619 0.00 0.00 0.00 2.74
2421 2719 2.092646 TGAATGCTTTACCCGCCACTAT 60.093 45.455 0.00 0.00 0.00 2.12
2422 2720 2.256117 ATGCTTTACCCGCCACTATC 57.744 50.000 0.00 0.00 0.00 2.08
2423 2721 1.200519 TGCTTTACCCGCCACTATCT 58.799 50.000 0.00 0.00 0.00 1.98
2424 2722 1.557832 TGCTTTACCCGCCACTATCTT 59.442 47.619 0.00 0.00 0.00 2.40
2425 2723 2.210961 GCTTTACCCGCCACTATCTTC 58.789 52.381 0.00 0.00 0.00 2.87
2426 2724 2.158943 GCTTTACCCGCCACTATCTTCT 60.159 50.000 0.00 0.00 0.00 2.85
2427 2725 3.681874 GCTTTACCCGCCACTATCTTCTT 60.682 47.826 0.00 0.00 0.00 2.52
2428 2726 3.536956 TTACCCGCCACTATCTTCTTG 57.463 47.619 0.00 0.00 0.00 3.02
2429 2727 1.568504 ACCCGCCACTATCTTCTTGA 58.431 50.000 0.00 0.00 0.00 3.02
2430 2728 1.207329 ACCCGCCACTATCTTCTTGAC 59.793 52.381 0.00 0.00 0.00 3.18
2431 2729 1.473434 CCCGCCACTATCTTCTTGACC 60.473 57.143 0.00 0.00 0.00 4.02
2432 2730 1.560923 CGCCACTATCTTCTTGACCG 58.439 55.000 0.00 0.00 0.00 4.79
2433 2731 1.291132 GCCACTATCTTCTTGACCGC 58.709 55.000 0.00 0.00 0.00 5.68
2434 2732 1.941325 CCACTATCTTCTTGACCGCC 58.059 55.000 0.00 0.00 0.00 6.13
2435 2733 1.482593 CCACTATCTTCTTGACCGCCT 59.517 52.381 0.00 0.00 0.00 5.52
2436 2734 2.482142 CCACTATCTTCTTGACCGCCTC 60.482 54.545 0.00 0.00 0.00 4.70
2437 2735 2.166459 CACTATCTTCTTGACCGCCTCA 59.834 50.000 0.00 0.00 0.00 3.86
2438 2736 2.832129 ACTATCTTCTTGACCGCCTCAA 59.168 45.455 0.00 0.00 36.46 3.02
2439 2737 2.859165 ATCTTCTTGACCGCCTCAAA 57.141 45.000 0.00 0.00 38.47 2.69
2440 2738 2.859165 TCTTCTTGACCGCCTCAAAT 57.141 45.000 0.00 0.00 38.47 2.32
2441 2739 3.140325 TCTTCTTGACCGCCTCAAATT 57.860 42.857 0.00 0.00 38.47 1.82
2442 2740 3.074412 TCTTCTTGACCGCCTCAAATTC 58.926 45.455 0.00 0.00 38.47 2.17
2443 2741 1.821216 TCTTGACCGCCTCAAATTCC 58.179 50.000 0.00 0.00 38.47 3.01
2444 2742 1.351017 TCTTGACCGCCTCAAATTCCT 59.649 47.619 0.00 0.00 38.47 3.36
2445 2743 1.470098 CTTGACCGCCTCAAATTCCTG 59.530 52.381 0.00 0.00 38.47 3.86
2446 2744 0.322456 TGACCGCCTCAAATTCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
2447 2745 0.035439 GACCGCCTCAAATTCCTGGA 60.035 55.000 0.00 0.00 0.00 3.86
2448 2746 0.035056 ACCGCCTCAAATTCCTGGAG 60.035 55.000 0.00 0.00 0.00 3.86
2450 2748 0.749454 CGCCTCAAATTCCTGGAGGG 60.749 60.000 8.82 0.00 46.63 4.30
2451 2749 1.039785 GCCTCAAATTCCTGGAGGGC 61.040 60.000 8.82 2.27 46.63 5.19
2452 2750 0.396278 CCTCAAATTCCTGGAGGGCC 60.396 60.000 0.00 0.00 43.59 5.80
2453 2751 0.627986 CTCAAATTCCTGGAGGGCCT 59.372 55.000 5.25 5.25 35.41 5.19
2454 2752 1.006400 CTCAAATTCCTGGAGGGCCTT 59.994 52.381 7.89 0.00 35.41 4.35
2455 2753 1.432807 TCAAATTCCTGGAGGGCCTTT 59.567 47.619 7.89 0.00 35.41 3.11
2456 2754 2.158173 TCAAATTCCTGGAGGGCCTTTT 60.158 45.455 7.89 0.00 35.41 2.27
2457 2755 1.942776 AATTCCTGGAGGGCCTTTTG 58.057 50.000 7.89 0.00 35.41 2.44
2458 2756 0.041684 ATTCCTGGAGGGCCTTTTGG 59.958 55.000 7.89 10.43 44.18 3.28
2459 2757 2.037847 CCTGGAGGGCCTTTTGGG 59.962 66.667 7.89 4.36 40.82 4.12
2476 2774 2.973082 GCTTCGGCCTTGGCATTT 59.027 55.556 14.04 0.00 34.32 2.32
2477 2775 1.293179 GCTTCGGCCTTGGCATTTT 59.707 52.632 14.04 0.00 34.32 1.82
2478 2776 1.015607 GCTTCGGCCTTGGCATTTTG 61.016 55.000 14.04 0.94 34.32 2.44
2479 2777 1.005156 TTCGGCCTTGGCATTTTGC 60.005 52.632 14.04 0.00 44.08 3.68
2489 2787 3.746108 GCATTTTGCACGTTCTCGA 57.254 47.368 0.00 0.00 44.26 4.04
2490 2788 1.595609 GCATTTTGCACGTTCTCGAG 58.404 50.000 5.93 5.93 44.26 4.04
2491 2789 1.725931 GCATTTTGCACGTTCTCGAGG 60.726 52.381 13.56 0.00 44.26 4.63
2492 2790 1.135972 CATTTTGCACGTTCTCGAGGG 60.136 52.381 13.56 5.06 40.62 4.30
2493 2791 1.503818 TTTTGCACGTTCTCGAGGGC 61.504 55.000 13.56 9.46 40.62 5.19
2494 2792 3.876589 TTGCACGTTCTCGAGGGCC 62.877 63.158 13.56 0.00 40.62 5.80
2495 2793 4.070552 GCACGTTCTCGAGGGCCT 62.071 66.667 5.25 5.25 40.62 5.19
2496 2794 2.657237 CACGTTCTCGAGGGCCTT 59.343 61.111 13.56 0.00 40.62 4.35
2497 2795 1.004918 CACGTTCTCGAGGGCCTTT 60.005 57.895 13.56 0.00 40.62 3.11
2498 2796 1.004918 ACGTTCTCGAGGGCCTTTG 60.005 57.895 13.56 3.52 40.62 2.77
2499 2797 2.391389 CGTTCTCGAGGGCCTTTGC 61.391 63.158 13.56 0.00 39.71 3.68
2500 2798 1.302511 GTTCTCGAGGGCCTTTGCA 60.303 57.895 13.56 0.00 40.13 4.08
2501 2799 0.889186 GTTCTCGAGGGCCTTTGCAA 60.889 55.000 13.56 0.00 40.13 4.08
2502 2800 0.606401 TTCTCGAGGGCCTTTGCAAG 60.606 55.000 13.56 1.22 40.13 4.01
2503 2801 2.672996 TCGAGGGCCTTTGCAAGC 60.673 61.111 7.89 0.00 40.13 4.01
2504 2802 2.674380 CGAGGGCCTTTGCAAGCT 60.674 61.111 7.89 0.00 40.13 3.74
2505 2803 2.694760 CGAGGGCCTTTGCAAGCTC 61.695 63.158 7.89 6.54 40.13 4.09
2506 2804 1.604593 GAGGGCCTTTGCAAGCTCA 60.605 57.895 7.89 0.00 40.13 4.26
2507 2805 1.593296 GAGGGCCTTTGCAAGCTCAG 61.593 60.000 7.89 1.28 40.13 3.35
2508 2806 1.604593 GGGCCTTTGCAAGCTCAGA 60.605 57.895 0.84 0.00 40.13 3.27
2509 2807 1.583477 GGCCTTTGCAAGCTCAGAC 59.417 57.895 10.16 0.00 40.13 3.51
2510 2808 1.583477 GCCTTTGCAAGCTCAGACC 59.417 57.895 0.00 0.00 37.47 3.85
2511 2809 1.871126 GCCTTTGCAAGCTCAGACCC 61.871 60.000 0.00 0.00 37.47 4.46
2512 2810 0.251077 CCTTTGCAAGCTCAGACCCT 60.251 55.000 0.00 0.00 0.00 4.34
2513 2811 1.613836 CTTTGCAAGCTCAGACCCTT 58.386 50.000 0.00 0.00 0.00 3.95
2514 2812 1.268899 CTTTGCAAGCTCAGACCCTTG 59.731 52.381 0.00 0.00 40.97 3.61
2515 2813 0.183492 TTGCAAGCTCAGACCCTTGT 59.817 50.000 0.00 0.00 40.34 3.16
2516 2814 0.535780 TGCAAGCTCAGACCCTTGTG 60.536 55.000 0.00 0.00 40.34 3.33
2517 2815 0.536006 GCAAGCTCAGACCCTTGTGT 60.536 55.000 0.00 0.00 40.34 3.72
2518 2816 1.517242 CAAGCTCAGACCCTTGTGTC 58.483 55.000 0.00 0.00 35.03 3.67
2519 2817 1.071385 CAAGCTCAGACCCTTGTGTCT 59.929 52.381 0.00 0.00 46.35 3.41
2520 2818 1.428869 AGCTCAGACCCTTGTGTCTT 58.571 50.000 0.00 0.00 42.92 3.01
2521 2819 2.609747 AGCTCAGACCCTTGTGTCTTA 58.390 47.619 0.00 0.00 42.92 2.10
2522 2820 2.564947 AGCTCAGACCCTTGTGTCTTAG 59.435 50.000 0.00 0.00 42.92 2.18
2523 2821 2.563179 GCTCAGACCCTTGTGTCTTAGA 59.437 50.000 6.57 0.00 42.92 2.10
2524 2822 3.367910 GCTCAGACCCTTGTGTCTTAGAG 60.368 52.174 6.57 5.66 42.92 2.43
2525 2823 3.829601 CTCAGACCCTTGTGTCTTAGAGT 59.170 47.826 0.00 0.00 42.92 3.24
2526 2824 3.827302 TCAGACCCTTGTGTCTTAGAGTC 59.173 47.826 0.00 0.00 42.92 3.36
2527 2825 3.574396 CAGACCCTTGTGTCTTAGAGTCA 59.426 47.826 0.00 0.00 42.92 3.41
2528 2826 3.574826 AGACCCTTGTGTCTTAGAGTCAC 59.425 47.826 0.00 0.00 42.92 3.67
2529 2827 2.296471 ACCCTTGTGTCTTAGAGTCACG 59.704 50.000 0.00 0.00 37.13 4.35
2530 2828 2.329379 CCTTGTGTCTTAGAGTCACGC 58.671 52.381 0.00 0.00 37.13 5.34
2531 2829 2.029828 CCTTGTGTCTTAGAGTCACGCT 60.030 50.000 0.00 0.00 37.13 5.07
2532 2830 2.991434 TGTGTCTTAGAGTCACGCTC 57.009 50.000 0.00 0.00 44.45 5.03
2533 2831 1.540267 TGTGTCTTAGAGTCACGCTCC 59.460 52.381 0.00 0.00 45.21 4.70
2534 2832 1.540267 GTGTCTTAGAGTCACGCTCCA 59.460 52.381 0.00 0.00 45.21 3.86
2535 2833 2.030185 GTGTCTTAGAGTCACGCTCCAA 60.030 50.000 0.00 0.00 45.21 3.53
2536 2834 2.229062 TGTCTTAGAGTCACGCTCCAAG 59.771 50.000 0.00 0.00 45.21 3.61
2537 2835 1.819288 TCTTAGAGTCACGCTCCAAGG 59.181 52.381 0.00 0.00 45.21 3.61
2538 2836 1.819288 CTTAGAGTCACGCTCCAAGGA 59.181 52.381 0.00 0.00 45.21 3.36
2539 2837 1.174783 TAGAGTCACGCTCCAAGGAC 58.825 55.000 0.00 0.00 45.21 3.85
2540 2838 0.540830 AGAGTCACGCTCCAAGGACT 60.541 55.000 0.00 0.00 45.21 3.85
2541 2839 0.109039 GAGTCACGCTCCAAGGACTC 60.109 60.000 5.06 5.06 46.39 3.36
2542 2840 0.827925 AGTCACGCTCCAAGGACTCA 60.828 55.000 0.00 0.00 35.85 3.41
2543 2841 0.247736 GTCACGCTCCAAGGACTCAT 59.752 55.000 0.00 0.00 0.00 2.90
2544 2842 1.476891 GTCACGCTCCAAGGACTCATA 59.523 52.381 0.00 0.00 0.00 2.15
2545 2843 1.476891 TCACGCTCCAAGGACTCATAC 59.523 52.381 0.00 0.00 0.00 2.39
2546 2844 1.478510 CACGCTCCAAGGACTCATACT 59.521 52.381 0.00 0.00 0.00 2.12
2547 2845 2.093973 CACGCTCCAAGGACTCATACTT 60.094 50.000 0.00 0.00 0.00 2.24
2548 2846 2.166664 ACGCTCCAAGGACTCATACTTC 59.833 50.000 0.00 0.00 0.00 3.01
2549 2847 2.428890 CGCTCCAAGGACTCATACTTCT 59.571 50.000 0.00 0.00 0.00 2.85
2550 2848 3.118956 CGCTCCAAGGACTCATACTTCTT 60.119 47.826 0.00 0.00 0.00 2.52
2551 2849 4.187694 GCTCCAAGGACTCATACTTCTTG 58.812 47.826 0.00 0.00 35.80 3.02
2552 2850 4.081420 GCTCCAAGGACTCATACTTCTTGA 60.081 45.833 0.00 0.00 37.57 3.02
2553 2851 5.407407 TCCAAGGACTCATACTTCTTGAC 57.593 43.478 0.00 0.00 37.57 3.18
2554 2852 4.082190 TCCAAGGACTCATACTTCTTGACG 60.082 45.833 0.00 0.00 37.57 4.35
2555 2853 4.082190 CCAAGGACTCATACTTCTTGACGA 60.082 45.833 0.00 0.00 37.57 4.20
2556 2854 5.470368 CAAGGACTCATACTTCTTGACGAA 58.530 41.667 0.00 0.00 37.57 3.85
2557 2855 5.061920 AGGACTCATACTTCTTGACGAAC 57.938 43.478 0.00 0.00 0.00 3.95
2558 2856 4.767928 AGGACTCATACTTCTTGACGAACT 59.232 41.667 0.00 0.00 0.00 3.01
2559 2857 5.096849 GGACTCATACTTCTTGACGAACTC 58.903 45.833 0.00 0.00 0.00 3.01
2560 2858 5.061920 ACTCATACTTCTTGACGAACTCC 57.938 43.478 0.00 0.00 0.00 3.85
2561 2859 4.767928 ACTCATACTTCTTGACGAACTCCT 59.232 41.667 0.00 0.00 0.00 3.69
2562 2860 5.060662 TCATACTTCTTGACGAACTCCTG 57.939 43.478 0.00 0.00 0.00 3.86
2563 2861 2.821991 ACTTCTTGACGAACTCCTGG 57.178 50.000 0.00 0.00 0.00 4.45
2564 2862 2.317040 ACTTCTTGACGAACTCCTGGA 58.683 47.619 0.00 0.00 0.00 3.86
2565 2863 2.297597 ACTTCTTGACGAACTCCTGGAG 59.702 50.000 22.00 22.00 35.52 3.86
2566 2864 0.603569 TCTTGACGAACTCCTGGAGC 59.396 55.000 23.43 7.41 32.04 4.70
2567 2865 0.605589 CTTGACGAACTCCTGGAGCT 59.394 55.000 23.43 11.92 32.04 4.09
2568 2866 0.603569 TTGACGAACTCCTGGAGCTC 59.396 55.000 23.43 19.25 32.04 4.09
2569 2867 0.251386 TGACGAACTCCTGGAGCTCT 60.251 55.000 23.43 10.57 32.04 4.09
2570 2868 0.892063 GACGAACTCCTGGAGCTCTT 59.108 55.000 23.43 14.40 32.04 2.85
2571 2869 0.605589 ACGAACTCCTGGAGCTCTTG 59.394 55.000 23.43 13.79 32.04 3.02
2572 2870 0.605589 CGAACTCCTGGAGCTCTTGT 59.394 55.000 23.43 0.52 32.04 3.16
2573 2871 1.001406 CGAACTCCTGGAGCTCTTGTT 59.999 52.381 23.43 9.91 32.04 2.83
2574 2872 2.421619 GAACTCCTGGAGCTCTTGTTG 58.578 52.381 23.43 4.49 32.04 3.33
2575 2873 1.722034 ACTCCTGGAGCTCTTGTTGA 58.278 50.000 23.43 3.03 32.04 3.18
2576 2874 2.050144 ACTCCTGGAGCTCTTGTTGAA 58.950 47.619 23.43 0.00 32.04 2.69
2577 2875 2.224402 ACTCCTGGAGCTCTTGTTGAAC 60.224 50.000 23.43 0.00 32.04 3.18
2578 2876 1.072331 TCCTGGAGCTCTTGTTGAACC 59.928 52.381 14.64 0.00 0.00 3.62
2579 2877 1.072965 CCTGGAGCTCTTGTTGAACCT 59.927 52.381 14.64 0.00 0.00 3.50
2580 2878 2.421619 CTGGAGCTCTTGTTGAACCTC 58.578 52.381 14.64 0.00 0.00 3.85
2581 2879 1.270305 TGGAGCTCTTGTTGAACCTCG 60.270 52.381 14.64 0.00 0.00 4.63
2582 2880 0.793250 GAGCTCTTGTTGAACCTCGC 59.207 55.000 6.43 0.00 0.00 5.03
2583 2881 0.603975 AGCTCTTGTTGAACCTCGCC 60.604 55.000 0.00 0.00 0.00 5.54
2584 2882 0.884704 GCTCTTGTTGAACCTCGCCA 60.885 55.000 0.00 0.00 0.00 5.69
2585 2883 1.593196 CTCTTGTTGAACCTCGCCAA 58.407 50.000 0.00 0.00 0.00 4.52
2586 2884 1.264288 CTCTTGTTGAACCTCGCCAAC 59.736 52.381 0.00 0.00 42.04 3.77
2587 2885 1.134220 TCTTGTTGAACCTCGCCAACT 60.134 47.619 0.00 0.00 42.16 3.16
2588 2886 1.676006 CTTGTTGAACCTCGCCAACTT 59.324 47.619 0.00 0.00 42.16 2.66
2589 2887 1.021202 TGTTGAACCTCGCCAACTTG 58.979 50.000 0.00 0.00 42.16 3.16
2590 2888 0.310854 GTTGAACCTCGCCAACTTGG 59.689 55.000 3.10 3.10 39.47 3.61
2591 2889 0.821711 TTGAACCTCGCCAACTTGGG 60.822 55.000 9.95 0.43 38.19 4.12
2599 2897 3.369921 CCAACTTGGGCCTCTTGC 58.630 61.111 4.53 0.00 40.16 4.01
2600 2898 1.228675 CCAACTTGGGCCTCTTGCT 60.229 57.895 4.53 0.00 40.92 3.91
2601 2899 0.829182 CCAACTTGGGCCTCTTGCTT 60.829 55.000 4.53 0.00 40.92 3.91
2602 2900 0.600057 CAACTTGGGCCTCTTGCTTC 59.400 55.000 4.53 0.00 40.92 3.86
2603 2901 0.480252 AACTTGGGCCTCTTGCTTCT 59.520 50.000 4.53 0.00 40.92 2.85
2604 2902 0.480252 ACTTGGGCCTCTTGCTTCTT 59.520 50.000 4.53 0.00 40.92 2.52
2605 2903 0.886563 CTTGGGCCTCTTGCTTCTTG 59.113 55.000 4.53 0.00 40.92 3.02
2606 2904 1.181098 TTGGGCCTCTTGCTTCTTGC 61.181 55.000 4.53 0.00 40.92 4.01
2607 2905 2.694760 GGGCCTCTTGCTTCTTGCG 61.695 63.158 0.84 0.00 46.63 4.85
2608 2906 2.177778 GCCTCTTGCTTCTTGCGC 59.822 61.111 0.00 0.00 46.63 6.09
2609 2907 2.331132 GCCTCTTGCTTCTTGCGCT 61.331 57.895 9.73 0.00 46.63 5.92
2610 2908 1.792941 CCTCTTGCTTCTTGCGCTC 59.207 57.895 9.73 0.00 46.63 5.03
2611 2909 1.419143 CTCTTGCTTCTTGCGCTCG 59.581 57.895 9.73 0.00 46.63 5.03
2612 2910 1.964290 CTCTTGCTTCTTGCGCTCGG 61.964 60.000 9.73 0.00 46.63 4.63
2613 2911 3.657835 CTTGCTTCTTGCGCTCGGC 62.658 63.158 9.73 6.71 46.63 5.54
2631 2929 4.643387 ACGCTCCTTGGCCGCTTT 62.643 61.111 0.00 0.00 0.00 3.51
2632 2930 4.107051 CGCTCCTTGGCCGCTTTG 62.107 66.667 0.00 0.00 0.00 2.77
2633 2931 4.426112 GCTCCTTGGCCGCTTTGC 62.426 66.667 0.00 0.00 0.00 3.68
2634 2932 2.674380 CTCCTTGGCCGCTTTGCT 60.674 61.111 0.00 0.00 0.00 3.91
2635 2933 2.203480 TCCTTGGCCGCTTTGCTT 60.203 55.556 0.00 0.00 0.00 3.91
2636 2934 1.809567 CTCCTTGGCCGCTTTGCTTT 61.810 55.000 0.00 0.00 0.00 3.51
2637 2935 1.373371 CCTTGGCCGCTTTGCTTTC 60.373 57.895 0.00 0.00 0.00 2.62
2638 2936 1.730547 CTTGGCCGCTTTGCTTTCG 60.731 57.895 0.00 0.00 0.00 3.46
2639 2937 3.206211 TTGGCCGCTTTGCTTTCGG 62.206 57.895 0.00 0.00 45.46 4.30
2642 2940 3.365265 CCGCTTTGCTTTCGGCCT 61.365 61.111 0.00 0.00 40.92 5.19
2643 2941 2.176792 CGCTTTGCTTTCGGCCTC 59.823 61.111 0.00 0.00 40.92 4.70
2644 2942 2.176792 GCTTTGCTTTCGGCCTCG 59.823 61.111 0.00 0.00 40.92 4.63
2645 2943 2.870372 CTTTGCTTTCGGCCTCGG 59.130 61.111 0.00 0.00 40.92 4.63
2646 2944 1.671054 CTTTGCTTTCGGCCTCGGA 60.671 57.895 0.00 0.00 40.92 4.55
2647 2945 1.002624 TTTGCTTTCGGCCTCGGAT 60.003 52.632 0.00 0.00 40.92 4.18
2648 2946 0.250793 TTTGCTTTCGGCCTCGGATA 59.749 50.000 0.00 0.00 40.92 2.59
2649 2947 0.179084 TTGCTTTCGGCCTCGGATAG 60.179 55.000 0.00 0.00 40.92 2.08
2650 2948 1.956678 GCTTTCGGCCTCGGATAGC 60.957 63.158 0.00 3.39 36.95 2.97
2651 2949 1.661821 CTTTCGGCCTCGGATAGCG 60.662 63.158 0.00 0.00 36.95 4.26
2652 2950 3.785189 TTTCGGCCTCGGATAGCGC 62.785 63.158 0.00 0.00 36.95 5.92
2655 2953 3.930012 GGCCTCGGATAGCGCCTT 61.930 66.667 2.29 0.00 38.10 4.35
2656 2954 2.109181 GCCTCGGATAGCGCCTTT 59.891 61.111 2.29 0.00 0.00 3.11
2657 2955 1.956678 GCCTCGGATAGCGCCTTTC 60.957 63.158 2.29 0.00 0.00 2.62
2658 2956 1.742768 CCTCGGATAGCGCCTTTCT 59.257 57.895 2.29 0.00 0.00 2.52
2659 2957 0.319125 CCTCGGATAGCGCCTTTCTC 60.319 60.000 2.29 0.00 0.00 2.87
2660 2958 0.385751 CTCGGATAGCGCCTTTCTCA 59.614 55.000 2.29 0.00 0.00 3.27
2661 2959 0.385751 TCGGATAGCGCCTTTCTCAG 59.614 55.000 2.29 0.00 0.00 3.35
2663 2961 0.250081 GGATAGCGCCTTTCTCAGGG 60.250 60.000 2.29 0.00 44.16 4.45
2664 2962 0.882484 GATAGCGCCTTTCTCAGGGC 60.882 60.000 2.29 0.00 44.16 5.19
2665 2963 1.341156 ATAGCGCCTTTCTCAGGGCT 61.341 55.000 2.29 6.79 45.88 5.19
2666 2964 2.244117 TAGCGCCTTTCTCAGGGCTG 62.244 60.000 2.29 0.00 44.57 4.85
2667 2965 3.130160 CGCCTTTCTCAGGGCTGC 61.130 66.667 0.00 0.00 44.16 5.25
2668 2966 2.753446 GCCTTTCTCAGGGCTGCC 60.753 66.667 11.05 11.05 44.16 4.85
2669 2967 2.759114 CCTTTCTCAGGGCTGCCA 59.241 61.111 22.05 0.00 39.39 4.92
2670 2968 1.676967 CCTTTCTCAGGGCTGCCAC 60.677 63.158 22.05 10.03 39.39 5.01
2671 2969 1.377994 CTTTCTCAGGGCTGCCACT 59.622 57.895 22.05 12.31 0.00 4.00
2672 2970 0.251077 CTTTCTCAGGGCTGCCACTT 60.251 55.000 22.05 2.04 0.00 3.16
2673 2971 0.250901 TTTCTCAGGGCTGCCACTTC 60.251 55.000 22.05 2.38 0.00 3.01
2674 2972 2.435586 CTCAGGGCTGCCACTTCG 60.436 66.667 22.05 3.38 0.00 3.79
2675 2973 3.965539 CTCAGGGCTGCCACTTCGG 62.966 68.421 22.05 3.68 38.11 4.30
2676 2974 4.335647 CAGGGCTGCCACTTCGGT 62.336 66.667 22.05 0.00 36.97 4.69
2677 2975 4.021925 AGGGCTGCCACTTCGGTC 62.022 66.667 22.05 0.00 36.97 4.79
2678 2976 4.329545 GGGCTGCCACTTCGGTCA 62.330 66.667 22.05 0.00 36.97 4.02
2679 2977 2.045926 GGCTGCCACTTCGGTCAT 60.046 61.111 15.17 0.00 36.97 3.06
2680 2978 2.401766 GGCTGCCACTTCGGTCATG 61.402 63.158 15.17 0.00 36.97 3.07
2681 2979 2.401766 GCTGCCACTTCGGTCATGG 61.402 63.158 0.00 0.00 36.97 3.66
2684 2982 2.438434 CCACTTCGGTCATGGCCC 60.438 66.667 11.65 1.15 0.00 5.80
2685 2983 2.438434 CACTTCGGTCATGGCCCC 60.438 66.667 11.65 0.00 0.00 5.80
2686 2984 2.610859 ACTTCGGTCATGGCCCCT 60.611 61.111 11.65 0.00 0.00 4.79
2687 2985 1.306654 ACTTCGGTCATGGCCCCTA 60.307 57.895 11.65 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
478 495 7.254727 GCTTCTTACATGATCTGACTTGAATCC 60.255 40.741 0.00 0.00 0.00 3.01
666 694 5.414789 AGAACTAGAGGAAAAAGAGCTCC 57.585 43.478 10.93 0.00 0.00 4.70
677 705 5.571285 TCTGTAGCTTCAAGAACTAGAGGA 58.429 41.667 0.00 0.00 30.43 3.71
909 955 0.178068 ATGGCATGTAGGTCGTCACC 59.822 55.000 0.00 0.00 44.19 4.02
910 956 2.024176 AATGGCATGTAGGTCGTCAC 57.976 50.000 0.00 0.00 0.00 3.67
912 958 3.793559 ACTTAATGGCATGTAGGTCGTC 58.206 45.455 0.00 0.00 0.00 4.20
913 959 3.906720 ACTTAATGGCATGTAGGTCGT 57.093 42.857 0.00 0.00 0.00 4.34
914 960 4.056050 GGTACTTAATGGCATGTAGGTCG 58.944 47.826 0.00 0.00 0.00 4.79
915 961 5.291905 AGGTACTTAATGGCATGTAGGTC 57.708 43.478 0.00 0.00 27.25 3.85
945 1016 2.746904 CACAAGTCATGCCGGATACAAA 59.253 45.455 5.05 0.00 0.00 2.83
946 1017 2.027653 TCACAAGTCATGCCGGATACAA 60.028 45.455 5.05 0.00 0.00 2.41
948 1019 2.159099 TCTCACAAGTCATGCCGGATAC 60.159 50.000 5.05 0.00 0.00 2.24
949 1020 2.101415 CTCTCACAAGTCATGCCGGATA 59.899 50.000 5.05 0.00 0.00 2.59
950 1021 0.904649 TCTCACAAGTCATGCCGGAT 59.095 50.000 5.05 0.00 0.00 4.18
953 1024 1.067283 AGACTCTCACAAGTCATGCCG 60.067 52.381 6.79 0.00 46.65 5.69
954 1025 2.758736 AGACTCTCACAAGTCATGCC 57.241 50.000 6.79 0.00 46.65 4.40
955 1026 3.434984 GGAAAGACTCTCACAAGTCATGC 59.565 47.826 6.79 0.00 46.65 4.06
956 1027 4.689812 CAGGAAAGACTCTCACAAGTCATG 59.310 45.833 6.79 0.00 46.65 3.07
957 1028 4.590647 TCAGGAAAGACTCTCACAAGTCAT 59.409 41.667 6.79 0.00 46.65 3.06
958 1029 3.960755 TCAGGAAAGACTCTCACAAGTCA 59.039 43.478 6.79 0.00 46.65 3.41
959 1030 4.592485 TCAGGAAAGACTCTCACAAGTC 57.408 45.455 0.00 0.00 44.96 3.01
1614 1895 4.141528 GGTCTTCATCATTGTCCTCCTCAT 60.142 45.833 0.00 0.00 0.00 2.90
1973 2271 7.095940 CCATGTAAGCACTTGAATTGAACAAAG 60.096 37.037 0.00 0.00 32.83 2.77
1975 2273 6.183360 ACCATGTAAGCACTTGAATTGAACAA 60.183 34.615 0.00 0.00 32.83 2.83
2151 2449 1.337728 CGGATAGCGGGTGATATTGCA 60.338 52.381 0.00 0.00 0.00 4.08
2178 2476 1.352114 CGGATTGAAGTCGGCGTAAA 58.648 50.000 6.85 0.00 0.00 2.01
2179 2477 1.079875 GCGGATTGAAGTCGGCGTAA 61.080 55.000 6.85 0.00 35.26 3.18
2189 2487 1.934589 CGTGGTGATAGCGGATTGAA 58.065 50.000 0.00 0.00 0.00 2.69
2237 2535 6.926313 AGAAGTTGTTCTGGTCTCAGTATAC 58.074 40.000 0.00 0.00 41.78 1.47
2238 2536 7.540474 AAGAAGTTGTTCTGGTCTCAGTATA 57.460 36.000 0.00 0.00 42.59 1.47
2239 2537 6.426646 AAGAAGTTGTTCTGGTCTCAGTAT 57.573 37.500 0.00 0.00 42.59 2.12
2240 2538 5.507482 CGAAGAAGTTGTTCTGGTCTCAGTA 60.507 44.000 10.68 0.00 42.59 2.74
2241 2539 4.698575 GAAGAAGTTGTTCTGGTCTCAGT 58.301 43.478 5.53 0.00 42.59 3.41
2242 2540 3.738282 CGAAGAAGTTGTTCTGGTCTCAG 59.262 47.826 10.68 0.00 42.59 3.35
2243 2541 3.132289 ACGAAGAAGTTGTTCTGGTCTCA 59.868 43.478 10.68 0.00 42.59 3.27
2244 2542 3.718815 ACGAAGAAGTTGTTCTGGTCTC 58.281 45.455 10.68 0.00 42.59 3.36
2245 2543 3.718815 GACGAAGAAGTTGTTCTGGTCT 58.281 45.455 10.68 0.00 42.59 3.85
2246 2544 2.471743 CGACGAAGAAGTTGTTCTGGTC 59.528 50.000 10.68 9.95 42.59 4.02
2247 2545 2.100252 TCGACGAAGAAGTTGTTCTGGT 59.900 45.455 10.68 2.61 42.59 4.00
2248 2546 2.726760 CTCGACGAAGAAGTTGTTCTGG 59.273 50.000 10.68 0.00 42.59 3.86
2249 2547 2.154007 GCTCGACGAAGAAGTTGTTCTG 59.846 50.000 10.68 7.02 42.59 3.02
2250 2548 2.034812 AGCTCGACGAAGAAGTTGTTCT 59.965 45.455 10.68 0.00 45.56 3.01
2251 2549 2.395654 AGCTCGACGAAGAAGTTGTTC 58.604 47.619 0.00 2.68 0.00 3.18
2252 2550 2.034812 AGAGCTCGACGAAGAAGTTGTT 59.965 45.455 8.37 0.00 0.00 2.83
2253 2551 1.609555 AGAGCTCGACGAAGAAGTTGT 59.390 47.619 8.37 0.00 0.00 3.32
2254 2552 2.095466 AGAGAGCTCGACGAAGAAGTTG 60.095 50.000 8.37 0.00 34.09 3.16
2255 2553 2.156098 AGAGAGCTCGACGAAGAAGTT 58.844 47.619 8.37 0.00 34.09 2.66
2256 2554 1.816074 AGAGAGCTCGACGAAGAAGT 58.184 50.000 8.37 0.00 34.09 3.01
2257 2555 2.477189 GGAAGAGAGCTCGACGAAGAAG 60.477 54.545 8.37 0.00 34.09 2.85
2258 2556 1.469308 GGAAGAGAGCTCGACGAAGAA 59.531 52.381 8.37 0.00 34.09 2.52
2259 2557 1.088306 GGAAGAGAGCTCGACGAAGA 58.912 55.000 8.37 0.00 34.09 2.87
2260 2558 1.063469 GAGGAAGAGAGCTCGACGAAG 59.937 57.143 8.37 0.00 34.09 3.79
2261 2559 1.088306 GAGGAAGAGAGCTCGACGAA 58.912 55.000 8.37 0.00 34.09 3.85
2262 2560 1.084935 CGAGGAAGAGAGCTCGACGA 61.085 60.000 8.37 0.00 41.24 4.20
2263 2561 1.350319 CGAGGAAGAGAGCTCGACG 59.650 63.158 8.37 4.22 41.24 5.12
2264 2562 1.725066 CCGAGGAAGAGAGCTCGAC 59.275 63.158 8.37 6.96 41.24 4.20
2265 2563 2.115911 GCCGAGGAAGAGAGCTCGA 61.116 63.158 8.37 0.00 41.24 4.04
2266 2564 2.411290 GCCGAGGAAGAGAGCTCG 59.589 66.667 8.37 0.00 38.83 5.03
2267 2565 2.791868 GGGCCGAGGAAGAGAGCTC 61.792 68.421 5.27 5.27 0.00 4.09
2268 2566 2.762043 GGGCCGAGGAAGAGAGCT 60.762 66.667 0.00 0.00 0.00 4.09
2269 2567 4.214327 CGGGCCGAGGAAGAGAGC 62.214 72.222 24.41 0.00 0.00 4.09
2270 2568 2.905935 TACCGGGCCGAGGAAGAGAG 62.906 65.000 30.79 9.73 0.00 3.20
2271 2569 2.905935 CTACCGGGCCGAGGAAGAGA 62.906 65.000 30.79 3.04 0.00 3.10
2272 2570 2.441532 TACCGGGCCGAGGAAGAG 60.442 66.667 30.79 11.41 0.00 2.85
2273 2571 2.441532 CTACCGGGCCGAGGAAGA 60.442 66.667 30.79 4.32 0.00 2.87
2274 2572 2.056223 TTCTACCGGGCCGAGGAAG 61.056 63.158 30.79 17.97 0.00 3.46
2275 2573 2.037687 TTCTACCGGGCCGAGGAA 59.962 61.111 30.79 23.18 0.00 3.36
2276 2574 2.757099 GTTCTACCGGGCCGAGGA 60.757 66.667 30.79 18.69 0.00 3.71
2277 2575 2.758737 AGTTCTACCGGGCCGAGG 60.759 66.667 30.79 14.82 0.00 4.63
2278 2576 1.753463 AGAGTTCTACCGGGCCGAG 60.753 63.158 30.79 18.55 0.00 4.63
2279 2577 2.050350 CAGAGTTCTACCGGGCCGA 61.050 63.158 30.79 7.47 0.00 5.54
2280 2578 2.494918 CAGAGTTCTACCGGGCCG 59.505 66.667 21.46 21.46 0.00 6.13
2281 2579 2.187163 GCAGAGTTCTACCGGGCC 59.813 66.667 6.32 0.00 0.00 5.80
2282 2580 2.202756 CGCAGAGTTCTACCGGGC 60.203 66.667 6.32 0.00 0.00 6.13
2283 2581 2.494918 CCGCAGAGTTCTACCGGG 59.505 66.667 6.32 0.00 36.80 5.73
2284 2582 2.202756 GCCGCAGAGTTCTACCGG 60.203 66.667 0.00 0.00 40.66 5.28
2285 2583 0.872021 GATGCCGCAGAGTTCTACCG 60.872 60.000 0.00 0.00 0.00 4.02
2286 2584 0.530870 GGATGCCGCAGAGTTCTACC 60.531 60.000 0.00 0.00 0.00 3.18
2287 2585 0.872021 CGGATGCCGCAGAGTTCTAC 60.872 60.000 0.00 0.00 41.17 2.59
2288 2586 1.437573 CGGATGCCGCAGAGTTCTA 59.562 57.895 0.00 0.00 41.17 2.10
2289 2587 2.185350 CGGATGCCGCAGAGTTCT 59.815 61.111 0.00 0.00 41.17 3.01
2299 2597 2.034879 CCACAGTGTGTCGGATGCC 61.035 63.158 21.48 0.00 0.00 4.40
2300 2598 2.034879 CCCACAGTGTGTCGGATGC 61.035 63.158 21.48 0.00 0.00 3.91
2301 2599 1.375908 CCCCACAGTGTGTCGGATG 60.376 63.158 21.48 5.33 0.00 3.51
2302 2600 0.543410 TACCCCACAGTGTGTCGGAT 60.543 55.000 25.71 11.22 0.00 4.18
2303 2601 1.152504 TACCCCACAGTGTGTCGGA 60.153 57.895 25.71 9.97 0.00 4.55
2304 2602 1.292223 CTACCCCACAGTGTGTCGG 59.708 63.158 21.48 20.63 0.00 4.79
2305 2603 1.292223 CCTACCCCACAGTGTGTCG 59.708 63.158 21.48 13.00 0.00 4.35
2306 2604 0.320697 GACCTACCCCACAGTGTGTC 59.679 60.000 21.48 7.22 0.00 3.67
2307 2605 0.105142 AGACCTACCCCACAGTGTGT 60.105 55.000 21.48 6.32 0.00 3.72
2308 2606 0.321671 CAGACCTACCCCACAGTGTG 59.678 60.000 16.70 16.70 0.00 3.82
2309 2607 1.481056 GCAGACCTACCCCACAGTGT 61.481 60.000 0.00 0.00 0.00 3.55
2310 2608 1.296715 GCAGACCTACCCCACAGTG 59.703 63.158 0.00 0.00 0.00 3.66
2311 2609 2.283529 CGCAGACCTACCCCACAGT 61.284 63.158 0.00 0.00 0.00 3.55
2312 2610 1.541310 TTCGCAGACCTACCCCACAG 61.541 60.000 0.00 0.00 34.32 3.66
2313 2611 1.534476 TTCGCAGACCTACCCCACA 60.534 57.895 0.00 0.00 34.32 4.17
2314 2612 1.079336 GTTCGCAGACCTACCCCAC 60.079 63.158 0.00 0.00 34.32 4.61
2315 2613 2.642254 CGTTCGCAGACCTACCCCA 61.642 63.158 0.00 0.00 34.32 4.96
2316 2614 2.183555 CGTTCGCAGACCTACCCC 59.816 66.667 0.00 0.00 34.32 4.95
2317 2615 2.508663 GCGTTCGCAGACCTACCC 60.509 66.667 12.33 0.00 34.32 3.69
2318 2616 1.516603 GAGCGTTCGCAGACCTACC 60.517 63.158 18.95 0.00 34.32 3.18
2319 2617 1.516603 GGAGCGTTCGCAGACCTAC 60.517 63.158 18.95 0.00 34.32 3.18
2320 2618 0.393402 TAGGAGCGTTCGCAGACCTA 60.393 55.000 22.15 22.15 34.32 3.08
2321 2619 1.658686 CTAGGAGCGTTCGCAGACCT 61.659 60.000 23.53 23.53 34.32 3.85
2322 2620 1.226717 CTAGGAGCGTTCGCAGACC 60.227 63.158 18.95 16.89 34.32 3.85
2323 2621 0.248296 CTCTAGGAGCGTTCGCAGAC 60.248 60.000 18.95 8.51 34.32 3.51
2324 2622 0.392595 TCTCTAGGAGCGTTCGCAGA 60.393 55.000 18.95 11.41 0.00 4.26
2325 2623 0.452184 TTCTCTAGGAGCGTTCGCAG 59.548 55.000 18.95 7.80 0.00 5.18
2326 2624 0.170561 GTTCTCTAGGAGCGTTCGCA 59.829 55.000 18.95 0.00 0.00 5.10
2327 2625 0.452585 AGTTCTCTAGGAGCGTTCGC 59.547 55.000 9.24 9.24 0.00 4.70
2328 2626 1.064357 GGAGTTCTCTAGGAGCGTTCG 59.936 57.143 0.00 0.00 0.00 3.95
2329 2627 1.064357 CGGAGTTCTCTAGGAGCGTTC 59.936 57.143 0.00 0.00 0.00 3.95
2330 2628 1.096416 CGGAGTTCTCTAGGAGCGTT 58.904 55.000 0.00 0.00 0.00 4.84
2331 2629 0.252479 TCGGAGTTCTCTAGGAGCGT 59.748 55.000 0.00 0.00 0.00 5.07
2332 2630 1.380524 TTCGGAGTTCTCTAGGAGCG 58.619 55.000 0.00 0.00 0.00 5.03
2333 2631 3.549221 CGAATTCGGAGTTCTCTAGGAGC 60.549 52.174 20.16 0.00 35.37 4.70
2334 2632 4.217754 CGAATTCGGAGTTCTCTAGGAG 57.782 50.000 20.16 0.00 35.37 3.69
2348 2646 6.148315 ACTTTCCTTTTACTTACCCGAATTCG 59.852 38.462 20.92 20.92 39.44 3.34
2349 2647 7.444629 ACTTTCCTTTTACTTACCCGAATTC 57.555 36.000 0.00 0.00 0.00 2.17
2350 2648 7.828508 AACTTTCCTTTTACTTACCCGAATT 57.171 32.000 0.00 0.00 0.00 2.17
2351 2649 7.040201 GGAAACTTTCCTTTTACTTACCCGAAT 60.040 37.037 12.69 0.00 46.57 3.34
2352 2650 6.262944 GGAAACTTTCCTTTTACTTACCCGAA 59.737 38.462 12.69 0.00 46.57 4.30
2353 2651 5.764686 GGAAACTTTCCTTTTACTTACCCGA 59.235 40.000 12.69 0.00 46.57 5.14
2354 2652 6.005583 GGAAACTTTCCTTTTACTTACCCG 57.994 41.667 12.69 0.00 46.57 5.28
2372 2670 3.375782 AAGCAAGCATGTGAAGGAAAC 57.624 42.857 0.00 0.00 0.00 2.78
2373 2671 3.719924 CAAAGCAAGCATGTGAAGGAAA 58.280 40.909 0.00 0.00 0.00 3.13
2374 2672 2.546373 GCAAAGCAAGCATGTGAAGGAA 60.546 45.455 0.00 0.00 0.00 3.36
2375 2673 1.000060 GCAAAGCAAGCATGTGAAGGA 60.000 47.619 0.00 0.00 0.00 3.36
2376 2674 1.269883 TGCAAAGCAAGCATGTGAAGG 60.270 47.619 0.00 0.00 37.02 3.46
2377 2675 2.143008 TGCAAAGCAAGCATGTGAAG 57.857 45.000 0.00 0.00 37.02 3.02
2395 2693 3.317711 TGGCGGGTAAAGCATTCATTATG 59.682 43.478 0.00 0.00 37.31 1.90
2396 2694 3.317993 GTGGCGGGTAAAGCATTCATTAT 59.682 43.478 0.00 0.00 36.08 1.28
2397 2695 2.685897 GTGGCGGGTAAAGCATTCATTA 59.314 45.455 0.00 0.00 36.08 1.90
2398 2696 1.476488 GTGGCGGGTAAAGCATTCATT 59.524 47.619 0.00 0.00 36.08 2.57
2399 2697 1.102978 GTGGCGGGTAAAGCATTCAT 58.897 50.000 0.00 0.00 36.08 2.57
2400 2698 0.037590 AGTGGCGGGTAAAGCATTCA 59.962 50.000 0.00 0.00 36.08 2.57
2401 2699 2.032680 TAGTGGCGGGTAAAGCATTC 57.967 50.000 0.00 0.00 36.08 2.67
2402 2700 2.172717 AGATAGTGGCGGGTAAAGCATT 59.827 45.455 0.00 0.00 36.08 3.56
2403 2701 1.768870 AGATAGTGGCGGGTAAAGCAT 59.231 47.619 0.00 0.00 36.08 3.79
2404 2702 1.200519 AGATAGTGGCGGGTAAAGCA 58.799 50.000 0.00 0.00 36.08 3.91
2405 2703 2.158943 AGAAGATAGTGGCGGGTAAAGC 60.159 50.000 0.00 0.00 0.00 3.51
2406 2704 3.821421 AGAAGATAGTGGCGGGTAAAG 57.179 47.619 0.00 0.00 0.00 1.85
2407 2705 3.516300 TCAAGAAGATAGTGGCGGGTAAA 59.484 43.478 0.00 0.00 0.00 2.01
2408 2706 3.101437 TCAAGAAGATAGTGGCGGGTAA 58.899 45.455 0.00 0.00 0.00 2.85
2409 2707 2.429610 GTCAAGAAGATAGTGGCGGGTA 59.570 50.000 0.00 0.00 0.00 3.69
2410 2708 1.207329 GTCAAGAAGATAGTGGCGGGT 59.793 52.381 0.00 0.00 0.00 5.28
2411 2709 1.473434 GGTCAAGAAGATAGTGGCGGG 60.473 57.143 0.00 0.00 0.00 6.13
2412 2710 1.802880 CGGTCAAGAAGATAGTGGCGG 60.803 57.143 0.00 0.00 0.00 6.13
2413 2711 1.560923 CGGTCAAGAAGATAGTGGCG 58.439 55.000 0.00 0.00 0.00 5.69
2414 2712 1.291132 GCGGTCAAGAAGATAGTGGC 58.709 55.000 0.00 0.00 0.00 5.01
2415 2713 1.482593 AGGCGGTCAAGAAGATAGTGG 59.517 52.381 0.00 0.00 0.00 4.00
2416 2714 2.166459 TGAGGCGGTCAAGAAGATAGTG 59.834 50.000 0.00 0.00 29.64 2.74
2417 2715 2.457598 TGAGGCGGTCAAGAAGATAGT 58.542 47.619 0.00 0.00 29.64 2.12
2418 2716 3.526931 TTGAGGCGGTCAAGAAGATAG 57.473 47.619 0.00 0.00 40.45 2.08
2419 2717 3.973206 TTTGAGGCGGTCAAGAAGATA 57.027 42.857 0.94 0.00 46.09 1.98
2420 2718 2.859165 TTTGAGGCGGTCAAGAAGAT 57.141 45.000 0.94 0.00 46.09 2.40
2421 2719 2.859165 ATTTGAGGCGGTCAAGAAGA 57.141 45.000 0.94 0.00 46.09 2.87
2422 2720 2.162408 GGAATTTGAGGCGGTCAAGAAG 59.838 50.000 0.94 0.00 46.09 2.85
2423 2721 2.159382 GGAATTTGAGGCGGTCAAGAA 58.841 47.619 0.94 0.00 46.09 2.52
2424 2722 1.351017 AGGAATTTGAGGCGGTCAAGA 59.649 47.619 0.94 0.00 46.09 3.02
2425 2723 1.470098 CAGGAATTTGAGGCGGTCAAG 59.530 52.381 0.94 0.00 46.09 3.02
2426 2724 1.533625 CAGGAATTTGAGGCGGTCAA 58.466 50.000 0.00 0.00 43.82 3.18
2427 2725 0.322456 CCAGGAATTTGAGGCGGTCA 60.322 55.000 0.00 0.00 0.00 4.02
2428 2726 0.035439 TCCAGGAATTTGAGGCGGTC 60.035 55.000 0.00 0.00 0.00 4.79
2429 2727 0.035056 CTCCAGGAATTTGAGGCGGT 60.035 55.000 0.00 0.00 0.00 5.68
2430 2728 0.749454 CCTCCAGGAATTTGAGGCGG 60.749 60.000 0.00 0.00 39.29 6.13
2431 2729 0.749454 CCCTCCAGGAATTTGAGGCG 60.749 60.000 0.00 0.00 43.56 5.52
2432 2730 1.039785 GCCCTCCAGGAATTTGAGGC 61.040 60.000 0.00 0.00 43.56 4.70
2433 2731 0.396278 GGCCCTCCAGGAATTTGAGG 60.396 60.000 0.00 0.00 44.34 3.86
2434 2732 0.627986 AGGCCCTCCAGGAATTTGAG 59.372 55.000 0.00 0.00 38.24 3.02
2435 2733 1.084018 AAGGCCCTCCAGGAATTTGA 58.916 50.000 0.00 0.00 38.24 2.69
2436 2734 1.942776 AAAGGCCCTCCAGGAATTTG 58.057 50.000 0.00 0.00 38.24 2.32
2437 2735 2.259917 CAAAAGGCCCTCCAGGAATTT 58.740 47.619 0.00 0.00 38.24 1.82
2438 2736 1.553184 CCAAAAGGCCCTCCAGGAATT 60.553 52.381 0.00 0.00 38.24 2.17
2439 2737 0.041684 CCAAAAGGCCCTCCAGGAAT 59.958 55.000 0.00 0.00 38.24 3.01
2440 2738 1.464722 CCAAAAGGCCCTCCAGGAA 59.535 57.895 0.00 0.00 38.24 3.36
2441 2739 2.547595 CCCAAAAGGCCCTCCAGGA 61.548 63.158 0.00 0.00 38.24 3.86
2442 2740 2.037847 CCCAAAAGGCCCTCCAGG 59.962 66.667 0.00 0.00 39.47 4.45
2459 2757 1.015607 CAAAATGCCAAGGCCGAAGC 61.016 55.000 8.89 1.31 41.09 3.86
2460 2758 1.015607 GCAAAATGCCAAGGCCGAAG 61.016 55.000 8.89 0.00 37.42 3.79
2461 2759 1.005156 GCAAAATGCCAAGGCCGAA 60.005 52.632 8.89 0.00 37.42 4.30
2462 2760 2.205843 TGCAAAATGCCAAGGCCGA 61.206 52.632 8.89 0.00 44.23 5.54
2463 2761 2.028733 GTGCAAAATGCCAAGGCCG 61.029 57.895 8.89 0.00 44.23 6.13
2464 2762 2.028733 CGTGCAAAATGCCAAGGCC 61.029 57.895 8.89 0.00 44.23 5.19
2465 2763 0.879839 AACGTGCAAAATGCCAAGGC 60.880 50.000 3.61 3.61 44.23 4.35
2466 2764 1.139163 GAACGTGCAAAATGCCAAGG 58.861 50.000 0.00 0.00 44.23 3.61
2467 2765 2.053627 GAGAACGTGCAAAATGCCAAG 58.946 47.619 0.00 0.00 44.23 3.61
2468 2766 1.599171 CGAGAACGTGCAAAATGCCAA 60.599 47.619 0.00 0.00 44.23 4.52
2469 2767 0.040514 CGAGAACGTGCAAAATGCCA 60.041 50.000 0.00 0.00 44.23 4.92
2470 2768 0.237235 TCGAGAACGTGCAAAATGCC 59.763 50.000 0.00 0.00 39.48 4.40
2471 2769 1.595609 CTCGAGAACGTGCAAAATGC 58.404 50.000 6.58 0.00 40.17 3.56
2472 2770 1.135972 CCCTCGAGAACGTGCAAAATG 60.136 52.381 15.71 0.00 40.69 2.32
2473 2771 1.156736 CCCTCGAGAACGTGCAAAAT 58.843 50.000 15.71 0.00 40.69 1.82
2474 2772 1.503818 GCCCTCGAGAACGTGCAAAA 61.504 55.000 15.71 0.00 40.69 2.44
2475 2773 1.959226 GCCCTCGAGAACGTGCAAA 60.959 57.895 15.71 0.00 40.69 3.68
2476 2774 2.357034 GCCCTCGAGAACGTGCAA 60.357 61.111 15.71 0.00 40.69 4.08
2477 2775 4.373116 GGCCCTCGAGAACGTGCA 62.373 66.667 15.71 0.00 40.69 4.57
2478 2776 3.591254 AAGGCCCTCGAGAACGTGC 62.591 63.158 15.71 8.06 40.69 5.34
2479 2777 1.004918 AAAGGCCCTCGAGAACGTG 60.005 57.895 15.71 0.00 40.69 4.49
2480 2778 1.004918 CAAAGGCCCTCGAGAACGT 60.005 57.895 15.71 3.92 40.69 3.99
2481 2779 2.391389 GCAAAGGCCCTCGAGAACG 61.391 63.158 15.71 1.59 41.26 3.95
2482 2780 0.889186 TTGCAAAGGCCCTCGAGAAC 60.889 55.000 15.71 4.94 40.13 3.01
2483 2781 0.606401 CTTGCAAAGGCCCTCGAGAA 60.606 55.000 15.71 0.00 41.27 2.87
2484 2782 1.003355 CTTGCAAAGGCCCTCGAGA 60.003 57.895 15.71 0.00 41.27 4.04
2485 2783 2.694760 GCTTGCAAAGGCCCTCGAG 61.695 63.158 5.13 5.13 46.35 4.04
2486 2784 2.672996 GCTTGCAAAGGCCCTCGA 60.673 61.111 0.00 0.00 46.35 4.04
2487 2785 2.674380 AGCTTGCAAAGGCCCTCG 60.674 61.111 0.00 0.00 46.35 4.63
2488 2786 1.593296 CTGAGCTTGCAAAGGCCCTC 61.593 60.000 0.00 0.00 46.35 4.30
2489 2787 1.605738 CTGAGCTTGCAAAGGCCCT 60.606 57.895 0.00 0.00 46.35 5.19
2490 2788 1.604593 TCTGAGCTTGCAAAGGCCC 60.605 57.895 0.00 0.00 46.35 5.80
2491 2789 1.583477 GTCTGAGCTTGCAAAGGCC 59.417 57.895 7.03 0.00 46.35 5.19
2492 2790 1.583477 GGTCTGAGCTTGCAAAGGC 59.417 57.895 0.00 0.81 46.35 4.35
2493 2791 0.251077 AGGGTCTGAGCTTGCAAAGG 60.251 55.000 0.00 0.00 46.35 3.11
2495 2793 1.321474 CAAGGGTCTGAGCTTGCAAA 58.679 50.000 0.00 0.00 0.00 3.68
2496 2794 0.183492 ACAAGGGTCTGAGCTTGCAA 59.817 50.000 6.83 0.00 0.00 4.08
2497 2795 0.535780 CACAAGGGTCTGAGCTTGCA 60.536 55.000 6.83 0.00 0.00 4.08
2498 2796 0.536006 ACACAAGGGTCTGAGCTTGC 60.536 55.000 6.83 0.00 0.00 4.01
2499 2797 1.071385 AGACACAAGGGTCTGAGCTTG 59.929 52.381 3.79 11.04 46.02 4.01
2500 2798 1.428869 AGACACAAGGGTCTGAGCTT 58.571 50.000 3.79 0.00 46.02 3.74
2501 2799 3.155897 AGACACAAGGGTCTGAGCT 57.844 52.632 3.79 0.00 46.02 4.09
2507 2805 3.612004 CGTGACTCTAAGACACAAGGGTC 60.612 52.174 9.53 0.00 42.51 4.46
2508 2806 2.296471 CGTGACTCTAAGACACAAGGGT 59.704 50.000 9.53 0.00 40.10 4.34
2509 2807 2.927014 GCGTGACTCTAAGACACAAGGG 60.927 54.545 9.53 0.00 40.10 3.95
2510 2808 2.029828 AGCGTGACTCTAAGACACAAGG 60.030 50.000 9.53 0.00 40.10 3.61
2511 2809 3.238441 GAGCGTGACTCTAAGACACAAG 58.762 50.000 9.53 0.00 40.10 3.16
2512 2810 2.030185 GGAGCGTGACTCTAAGACACAA 60.030 50.000 9.53 0.00 45.48 3.33
2513 2811 1.540267 GGAGCGTGACTCTAAGACACA 59.460 52.381 9.53 0.00 45.48 3.72
2514 2812 1.540267 TGGAGCGTGACTCTAAGACAC 59.460 52.381 0.42 0.42 45.48 3.67
2515 2813 1.905637 TGGAGCGTGACTCTAAGACA 58.094 50.000 0.00 0.00 45.48 3.41
2519 2817 1.544691 GTCCTTGGAGCGTGACTCTAA 59.455 52.381 0.00 0.00 45.48 2.10
2520 2818 1.174783 GTCCTTGGAGCGTGACTCTA 58.825 55.000 0.00 0.00 45.48 2.43
2521 2819 0.540830 AGTCCTTGGAGCGTGACTCT 60.541 55.000 0.00 0.00 45.48 3.24
2522 2820 0.109039 GAGTCCTTGGAGCGTGACTC 60.109 60.000 0.00 0.00 44.71 3.36
2523 2821 0.827925 TGAGTCCTTGGAGCGTGACT 60.828 55.000 0.00 0.00 40.60 3.41
2524 2822 0.247736 ATGAGTCCTTGGAGCGTGAC 59.752 55.000 0.00 0.00 0.00 3.67
2525 2823 1.476891 GTATGAGTCCTTGGAGCGTGA 59.523 52.381 0.00 0.00 0.00 4.35
2526 2824 1.478510 AGTATGAGTCCTTGGAGCGTG 59.521 52.381 0.00 0.00 0.00 5.34
2527 2825 1.853963 AGTATGAGTCCTTGGAGCGT 58.146 50.000 0.00 0.00 0.00 5.07
2528 2826 2.428890 AGAAGTATGAGTCCTTGGAGCG 59.571 50.000 0.00 0.00 0.00 5.03
2529 2827 4.081420 TCAAGAAGTATGAGTCCTTGGAGC 60.081 45.833 0.00 0.00 36.01 4.70
2530 2828 5.415221 GTCAAGAAGTATGAGTCCTTGGAG 58.585 45.833 0.00 0.00 36.01 3.86
2531 2829 4.082190 CGTCAAGAAGTATGAGTCCTTGGA 60.082 45.833 0.00 0.00 36.01 3.53
2532 2830 4.082190 TCGTCAAGAAGTATGAGTCCTTGG 60.082 45.833 0.00 0.00 36.01 3.61
2533 2831 5.060662 TCGTCAAGAAGTATGAGTCCTTG 57.939 43.478 0.00 0.00 36.49 3.61
2534 2832 5.244178 AGTTCGTCAAGAAGTATGAGTCCTT 59.756 40.000 0.00 0.00 40.53 3.36
2535 2833 4.767928 AGTTCGTCAAGAAGTATGAGTCCT 59.232 41.667 0.00 0.00 40.53 3.85
2536 2834 5.061920 AGTTCGTCAAGAAGTATGAGTCC 57.938 43.478 0.00 0.00 40.53 3.85
2537 2835 5.096849 GGAGTTCGTCAAGAAGTATGAGTC 58.903 45.833 0.00 0.00 42.26 3.36
2538 2836 4.767928 AGGAGTTCGTCAAGAAGTATGAGT 59.232 41.667 0.00 0.00 42.26 3.41
2539 2837 5.098893 CAGGAGTTCGTCAAGAAGTATGAG 58.901 45.833 0.00 0.00 42.26 2.90
2540 2838 4.082190 CCAGGAGTTCGTCAAGAAGTATGA 60.082 45.833 0.00 0.00 42.26 2.15
2541 2839 4.082190 TCCAGGAGTTCGTCAAGAAGTATG 60.082 45.833 0.00 0.00 42.26 2.39
2542 2840 4.087182 TCCAGGAGTTCGTCAAGAAGTAT 58.913 43.478 0.00 0.00 42.26 2.12
2543 2841 3.493334 TCCAGGAGTTCGTCAAGAAGTA 58.507 45.455 0.00 0.00 42.26 2.24
2544 2842 2.297597 CTCCAGGAGTTCGTCAAGAAGT 59.702 50.000 8.54 0.00 44.71 3.01
2545 2843 2.928731 GCTCCAGGAGTTCGTCAAGAAG 60.929 54.545 18.37 0.00 39.95 2.85
2546 2844 1.000955 GCTCCAGGAGTTCGTCAAGAA 59.999 52.381 18.37 0.00 36.31 2.52
2547 2845 0.603569 GCTCCAGGAGTTCGTCAAGA 59.396 55.000 18.37 0.00 31.39 3.02
2548 2846 0.605589 AGCTCCAGGAGTTCGTCAAG 59.394 55.000 18.37 0.00 31.39 3.02
2549 2847 0.603569 GAGCTCCAGGAGTTCGTCAA 59.396 55.000 16.91 0.00 31.01 3.18
2550 2848 0.251386 AGAGCTCCAGGAGTTCGTCA 60.251 55.000 23.64 0.00 43.11 4.35
2551 2849 0.892063 AAGAGCTCCAGGAGTTCGTC 59.108 55.000 23.64 13.06 43.11 4.20
2552 2850 0.605589 CAAGAGCTCCAGGAGTTCGT 59.394 55.000 23.64 19.39 43.11 3.85
2553 2851 0.605589 ACAAGAGCTCCAGGAGTTCG 59.394 55.000 23.64 14.96 43.11 3.95
2554 2852 2.037772 TCAACAAGAGCTCCAGGAGTTC 59.962 50.000 22.81 22.81 39.61 3.01
2555 2853 2.050144 TCAACAAGAGCTCCAGGAGTT 58.950 47.619 18.37 12.45 31.39 3.01
2556 2854 1.722034 TCAACAAGAGCTCCAGGAGT 58.278 50.000 18.37 4.82 31.39 3.85
2557 2855 2.421619 GTTCAACAAGAGCTCCAGGAG 58.578 52.381 12.81 12.81 0.00 3.69
2558 2856 1.072331 GGTTCAACAAGAGCTCCAGGA 59.928 52.381 10.93 0.00 0.00 3.86
2559 2857 1.072965 AGGTTCAACAAGAGCTCCAGG 59.927 52.381 10.93 2.45 0.00 4.45
2560 2858 2.421619 GAGGTTCAACAAGAGCTCCAG 58.578 52.381 10.93 5.72 35.05 3.86
2561 2859 1.270305 CGAGGTTCAACAAGAGCTCCA 60.270 52.381 10.93 0.00 37.16 3.86
2562 2860 1.433534 CGAGGTTCAACAAGAGCTCC 58.566 55.000 10.93 0.00 37.16 4.70
2563 2861 0.793250 GCGAGGTTCAACAAGAGCTC 59.207 55.000 5.27 5.27 37.12 4.09
2564 2862 0.603975 GGCGAGGTTCAACAAGAGCT 60.604 55.000 0.00 0.00 0.00 4.09
2565 2863 0.884704 TGGCGAGGTTCAACAAGAGC 60.885 55.000 0.00 0.00 0.00 4.09
2566 2864 1.264288 GTTGGCGAGGTTCAACAAGAG 59.736 52.381 0.00 0.00 41.85 2.85
2567 2865 1.134220 AGTTGGCGAGGTTCAACAAGA 60.134 47.619 8.57 0.00 43.91 3.02
2568 2866 1.308998 AGTTGGCGAGGTTCAACAAG 58.691 50.000 8.57 0.00 43.91 3.16
2569 2867 1.403679 CAAGTTGGCGAGGTTCAACAA 59.596 47.619 8.57 0.00 43.91 2.83
2570 2868 1.021202 CAAGTTGGCGAGGTTCAACA 58.979 50.000 8.57 0.00 43.91 3.33
2571 2869 0.310854 CCAAGTTGGCGAGGTTCAAC 59.689 55.000 9.46 0.00 42.37 3.18
2572 2870 0.821711 CCCAAGTTGGCGAGGTTCAA 60.822 55.000 17.07 0.00 35.79 2.69
2573 2871 1.228124 CCCAAGTTGGCGAGGTTCA 60.228 57.895 17.07 0.00 35.79 3.18
2574 2872 2.626780 GCCCAAGTTGGCGAGGTTC 61.627 63.158 17.07 0.00 42.54 3.62
2575 2873 2.597510 GCCCAAGTTGGCGAGGTT 60.598 61.111 17.07 0.00 42.54 3.50
2582 2880 0.829182 AAGCAAGAGGCCCAAGTTGG 60.829 55.000 15.52 15.52 46.50 3.77
2583 2881 0.600057 GAAGCAAGAGGCCCAAGTTG 59.400 55.000 0.00 0.00 46.50 3.16
2584 2882 0.480252 AGAAGCAAGAGGCCCAAGTT 59.520 50.000 0.00 0.00 46.50 2.66
2585 2883 0.480252 AAGAAGCAAGAGGCCCAAGT 59.520 50.000 0.00 0.00 46.50 3.16
2586 2884 0.886563 CAAGAAGCAAGAGGCCCAAG 59.113 55.000 0.00 0.00 46.50 3.61
2587 2885 1.181098 GCAAGAAGCAAGAGGCCCAA 61.181 55.000 0.00 0.00 46.50 4.12
2588 2886 1.604593 GCAAGAAGCAAGAGGCCCA 60.605 57.895 0.00 0.00 46.50 5.36
2589 2887 2.694760 CGCAAGAAGCAAGAGGCCC 61.695 63.158 0.00 0.00 46.13 5.80
2590 2888 2.873288 CGCAAGAAGCAAGAGGCC 59.127 61.111 0.00 0.00 46.13 5.19
2591 2889 2.177778 GCGCAAGAAGCAAGAGGC 59.822 61.111 0.30 0.00 46.13 4.70
2592 2890 1.792941 GAGCGCAAGAAGCAAGAGG 59.207 57.895 11.47 0.00 46.13 3.69
2593 2891 1.419143 CGAGCGCAAGAAGCAAGAG 59.581 57.895 11.47 0.00 46.13 2.85
2594 2892 2.029288 CCGAGCGCAAGAAGCAAGA 61.029 57.895 11.47 0.00 46.13 3.02
2595 2893 2.477845 CCGAGCGCAAGAAGCAAG 59.522 61.111 11.47 0.00 46.13 4.01
2596 2894 3.726517 GCCGAGCGCAAGAAGCAA 61.727 61.111 11.47 0.00 46.13 3.91
2614 2912 4.643387 AAAGCGGCCAAGGAGCGT 62.643 61.111 2.24 0.00 35.78 5.07
2615 2913 4.107051 CAAAGCGGCCAAGGAGCG 62.107 66.667 2.24 0.00 35.78 5.03
2616 2914 4.426112 GCAAAGCGGCCAAGGAGC 62.426 66.667 2.24 0.00 0.00 4.70
2617 2915 1.809567 AAAGCAAAGCGGCCAAGGAG 61.810 55.000 2.24 0.00 0.00 3.69
2618 2916 1.805428 GAAAGCAAAGCGGCCAAGGA 61.805 55.000 2.24 0.00 0.00 3.36
2619 2917 1.373371 GAAAGCAAAGCGGCCAAGG 60.373 57.895 2.24 0.00 0.00 3.61
2620 2918 1.730547 CGAAAGCAAAGCGGCCAAG 60.731 57.895 2.24 0.00 0.00 3.61
2621 2919 2.334653 CGAAAGCAAAGCGGCCAA 59.665 55.556 2.24 0.00 0.00 4.52
2622 2920 3.669344 CCGAAAGCAAAGCGGCCA 61.669 61.111 2.24 0.00 38.46 5.36
2625 2923 3.328288 GAGGCCGAAAGCAAAGCGG 62.328 63.158 0.00 0.00 46.50 5.52
2626 2924 2.176792 GAGGCCGAAAGCAAAGCG 59.823 61.111 0.00 0.00 46.50 4.68
2627 2925 2.176792 CGAGGCCGAAAGCAAAGC 59.823 61.111 0.00 0.00 46.50 3.51
2628 2926 1.026718 ATCCGAGGCCGAAAGCAAAG 61.027 55.000 0.00 0.00 46.50 2.77
2629 2927 0.250793 TATCCGAGGCCGAAAGCAAA 59.749 50.000 0.00 0.00 46.50 3.68
2630 2928 0.179084 CTATCCGAGGCCGAAAGCAA 60.179 55.000 0.00 0.00 46.50 3.91
2631 2929 1.441729 CTATCCGAGGCCGAAAGCA 59.558 57.895 0.00 0.00 46.50 3.91
2632 2930 1.956678 GCTATCCGAGGCCGAAAGC 60.957 63.158 0.00 0.00 42.60 3.51
2633 2931 1.661821 CGCTATCCGAGGCCGAAAG 60.662 63.158 0.00 0.00 40.02 2.62
2634 2932 2.415843 CGCTATCCGAGGCCGAAA 59.584 61.111 0.00 0.00 40.02 3.46
2635 2933 4.280494 GCGCTATCCGAGGCCGAA 62.280 66.667 0.00 0.00 40.02 4.30
2638 2936 3.462199 AAAGGCGCTATCCGAGGCC 62.462 63.158 7.64 0.00 40.18 5.19
2639 2937 1.956678 GAAAGGCGCTATCCGAGGC 60.957 63.158 7.64 0.00 40.02 4.70
2640 2938 0.319125 GAGAAAGGCGCTATCCGAGG 60.319 60.000 7.64 0.00 40.02 4.63
2641 2939 0.385751 TGAGAAAGGCGCTATCCGAG 59.614 55.000 7.64 0.00 40.02 4.63
2642 2940 0.385751 CTGAGAAAGGCGCTATCCGA 59.614 55.000 7.64 0.00 40.02 4.55
2643 2941 0.598680 CCTGAGAAAGGCGCTATCCG 60.599 60.000 7.64 0.00 39.93 4.18
2644 2942 0.250081 CCCTGAGAAAGGCGCTATCC 60.250 60.000 7.64 0.00 45.89 2.59
2645 2943 0.882484 GCCCTGAGAAAGGCGCTATC 60.882 60.000 7.64 3.20 45.89 2.08
2646 2944 1.147153 GCCCTGAGAAAGGCGCTAT 59.853 57.895 7.64 0.00 45.89 2.97
2647 2945 2.584608 GCCCTGAGAAAGGCGCTA 59.415 61.111 7.64 0.00 45.89 4.26
2652 2950 1.676967 GTGGCAGCCCTGAGAAAGG 60.677 63.158 9.64 0.00 46.94 3.11
2653 2951 0.251077 AAGTGGCAGCCCTGAGAAAG 60.251 55.000 9.64 0.00 0.00 2.62
2654 2952 0.250901 GAAGTGGCAGCCCTGAGAAA 60.251 55.000 9.64 0.00 0.00 2.52
2655 2953 1.376466 GAAGTGGCAGCCCTGAGAA 59.624 57.895 9.64 0.00 0.00 2.87
2656 2954 2.947532 CGAAGTGGCAGCCCTGAGA 61.948 63.158 9.64 0.00 0.00 3.27
2657 2955 2.435586 CGAAGTGGCAGCCCTGAG 60.436 66.667 9.64 0.18 0.00 3.35
2658 2956 4.020617 CCGAAGTGGCAGCCCTGA 62.021 66.667 9.64 0.00 0.00 3.86
2659 2957 4.335647 ACCGAAGTGGCAGCCCTG 62.336 66.667 9.64 0.00 43.94 4.45
2660 2958 4.021925 GACCGAAGTGGCAGCCCT 62.022 66.667 9.64 2.35 43.94 5.19
2661 2959 3.628646 ATGACCGAAGTGGCAGCCC 62.629 63.158 9.64 0.00 43.94 5.19
2662 2960 2.045926 ATGACCGAAGTGGCAGCC 60.046 61.111 3.66 3.66 43.94 4.85
2663 2961 2.401766 CCATGACCGAAGTGGCAGC 61.402 63.158 0.00 0.00 43.94 5.25
2664 2962 3.895025 CCATGACCGAAGTGGCAG 58.105 61.111 0.00 0.00 43.94 4.85
2667 2965 2.438434 GGGCCATGACCGAAGTGG 60.438 66.667 4.39 0.00 46.41 4.00
2668 2966 1.622607 TAGGGGCCATGACCGAAGTG 61.623 60.000 4.39 0.00 0.00 3.16
2669 2967 1.306654 TAGGGGCCATGACCGAAGT 60.307 57.895 4.39 0.00 0.00 3.01
2670 2968 3.642078 TAGGGGCCATGACCGAAG 58.358 61.111 4.39 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.