Multiple sequence alignment - TraesCS7A01G246900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G246900 chr7A 100.000 3211 0 0 1 3211 226759981 226756771 0.000000e+00 5930
1 TraesCS7A01G246900 chr7A 90.741 324 30 0 1037 1360 621011430 621011107 1.770000e-117 433
2 TraesCS7A01G246900 chr7A 99.338 151 1 0 789 939 219852982 219852832 1.130000e-69 274
3 TraesCS7A01G246900 chr7D 95.961 2278 54 6 970 3211 214354633 214352358 0.000000e+00 3663
4 TraesCS7A01G246900 chr7B 95.507 2248 75 15 984 3211 186814334 186816575 0.000000e+00 3568
5 TraesCS7A01G246900 chr7B 86.170 470 54 6 1 468 186812681 186813141 6.190000e-137 497
6 TraesCS7A01G246900 chr2A 84.375 352 43 7 995 1346 747160079 747160418 5.130000e-88 335
7 TraesCS7A01G246900 chr2A 100.000 152 0 0 789 940 118674024 118674175 6.780000e-72 281
8 TraesCS7A01G246900 chr1A 100.000 155 0 0 788 942 488623776 488623622 1.460000e-73 287
9 TraesCS7A01G246900 chr6A 99.351 154 1 0 788 941 600302201 600302048 2.440000e-71 279
10 TraesCS7A01G246900 chr3B 99.346 153 1 0 789 941 100968457 100968305 8.770000e-71 278
11 TraesCS7A01G246900 chr3B 99.333 150 1 0 789 938 817065042 817065191 4.080000e-69 272
12 TraesCS7A01G246900 chr6B 98.710 155 2 0 786 940 164031986 164032140 3.160000e-70 276
13 TraesCS7A01G246900 chr4B 99.338 151 1 0 788 938 189153188 189153338 1.130000e-69 274
14 TraesCS7A01G246900 chr4D 99.333 150 1 0 789 938 498575152 498575301 4.080000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G246900 chr7A 226756771 226759981 3210 True 5930.0 5930 100.0000 1 3211 1 chr7A.!!$R2 3210
1 TraesCS7A01G246900 chr7D 214352358 214354633 2275 True 3663.0 3663 95.9610 970 3211 1 chr7D.!!$R1 2241
2 TraesCS7A01G246900 chr7B 186812681 186816575 3894 False 2032.5 3568 90.8385 1 3211 2 chr7B.!!$F1 3210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 1814 0.039074 GTCGTCTGTGTAGCAGCACT 60.039 55.0 11.09 0.0 44.66 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2925 3882 2.403698 CGCGCCAAAGTTTTGTATGTTC 59.596 45.455 0.0 0.0 36.45 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.015292 CCACAAGGTACCTAATCATCTAAGCTA 59.985 40.741 16.67 0.00 0.00 3.32
38 39 7.868415 CACAAGGTACCTAATCATCTAAGCTAC 59.132 40.741 16.67 0.00 0.00 3.58
39 40 7.563924 ACAAGGTACCTAATCATCTAAGCTACA 59.436 37.037 16.67 0.00 0.00 2.74
40 41 7.527568 AGGTACCTAATCATCTAAGCTACAC 57.472 40.000 14.41 0.00 0.00 2.90
41 42 7.067421 AGGTACCTAATCATCTAAGCTACACA 58.933 38.462 14.41 0.00 0.00 3.72
42 43 7.563924 AGGTACCTAATCATCTAAGCTACACAA 59.436 37.037 14.41 0.00 0.00 3.33
43 44 8.368668 GGTACCTAATCATCTAAGCTACACAAT 58.631 37.037 4.06 0.00 0.00 2.71
44 45 9.413048 GTACCTAATCATCTAAGCTACACAATC 57.587 37.037 0.00 0.00 0.00 2.67
45 46 7.445945 ACCTAATCATCTAAGCTACACAATCC 58.554 38.462 0.00 0.00 0.00 3.01
46 47 7.071196 ACCTAATCATCTAAGCTACACAATCCA 59.929 37.037 0.00 0.00 0.00 3.41
54 55 4.771590 AGCTACACAATCCACAACAATG 57.228 40.909 0.00 0.00 0.00 2.82
59 60 7.340232 AGCTACACAATCCACAACAATGATATT 59.660 33.333 0.00 0.00 0.00 1.28
95 96 5.225094 TCCTTAGGTTAGGTAGGCCTTTA 57.775 43.478 12.58 0.00 44.18 1.85
100 101 2.159043 GGTTAGGTAGGCCTTTACCGAC 60.159 54.545 12.58 16.88 46.27 4.79
156 158 3.445008 AGGACCTCAAGAAGCATCACTA 58.555 45.455 0.00 0.00 0.00 2.74
158 160 3.182967 GACCTCAAGAAGCATCACTACG 58.817 50.000 0.00 0.00 0.00 3.51
163 165 5.066117 CCTCAAGAAGCATCACTACGTAGTA 59.934 44.000 26.95 15.78 45.11 1.82
181 183 4.347360 AGTAAGGTGGTTTAGGTGTGTC 57.653 45.455 0.00 0.00 0.00 3.67
182 184 3.712733 AGTAAGGTGGTTTAGGTGTGTCA 59.287 43.478 0.00 0.00 0.00 3.58
186 188 5.514500 AGGTGGTTTAGGTGTGTCAATAT 57.486 39.130 0.00 0.00 0.00 1.28
188 190 7.023171 AGGTGGTTTAGGTGTGTCAATATTA 57.977 36.000 0.00 0.00 0.00 0.98
199 201 9.095065 AGGTGTGTCAATATTATAAAAGACGTC 57.905 33.333 7.70 7.70 0.00 4.34
222 224 4.035208 CGGGATAGACCAAACTTAACATGC 59.965 45.833 0.00 0.00 41.20 4.06
234 236 1.753930 TAACATGCGAGGAGTCCGTA 58.246 50.000 2.76 0.00 0.00 4.02
237 239 1.274167 ACATGCGAGGAGTCCGTAAAA 59.726 47.619 2.76 0.00 0.00 1.52
239 241 2.074547 TGCGAGGAGTCCGTAAAAAG 57.925 50.000 2.76 0.00 0.00 2.27
244 246 4.352887 CGAGGAGTCCGTAAAAAGAGATC 58.647 47.826 2.76 0.00 0.00 2.75
249 251 7.548967 AGGAGTCCGTAAAAAGAGATCTAAAG 58.451 38.462 2.76 0.00 0.00 1.85
263 265 8.729805 AGAGATCTAAAGGATTGAAATGTCAC 57.270 34.615 0.00 0.00 34.33 3.67
279 281 9.473007 TGAAATGTCACCAAAGATTTATCCATA 57.527 29.630 0.00 0.00 0.00 2.74
281 283 9.699410 AAATGTCACCAAAGATTTATCCATAGA 57.301 29.630 0.00 0.00 0.00 1.98
285 287 8.831550 GTCACCAAAGATTTATCCATAGACTTC 58.168 37.037 0.00 0.00 0.00 3.01
300 302 4.713792 AGACTTCAGGAGGTGTTCATTT 57.286 40.909 0.00 0.00 0.00 2.32
307 309 4.838423 TCAGGAGGTGTTCATTTCTCACTA 59.162 41.667 0.00 0.00 33.30 2.74
308 310 4.932200 CAGGAGGTGTTCATTTCTCACTAC 59.068 45.833 0.00 0.00 33.30 2.73
324 326 2.371179 CACTACATGGCCTGAGGATGAT 59.629 50.000 0.65 0.00 0.00 2.45
328 330 2.158652 ACATGGCCTGAGGATGATTGAG 60.159 50.000 0.65 0.00 0.00 3.02
334 336 5.002516 GGCCTGAGGATGATTGAGATAAAG 58.997 45.833 0.65 0.00 0.00 1.85
337 339 5.925397 CCTGAGGATGATTGAGATAAAGTCG 59.075 44.000 0.00 0.00 0.00 4.18
339 341 6.507900 TGAGGATGATTGAGATAAAGTCGTC 58.492 40.000 0.00 0.00 0.00 4.20
365 367 2.621526 CCAACCTTACCGAATTATGGCC 59.378 50.000 0.00 0.00 0.00 5.36
366 368 2.621526 CAACCTTACCGAATTATGGCCC 59.378 50.000 0.00 0.00 0.00 5.80
383 385 0.249699 CCCGTCGCCAAGCATGTATA 60.250 55.000 0.00 0.00 0.00 1.47
388 390 2.673368 GTCGCCAAGCATGTATATAGGC 59.327 50.000 0.00 0.00 37.32 3.93
393 395 4.441792 CCAAGCATGTATATAGGCGCATA 58.558 43.478 10.83 7.12 0.00 3.14
394 396 4.271049 CCAAGCATGTATATAGGCGCATAC 59.729 45.833 10.83 9.25 0.00 2.39
417 419 6.692486 ACGTGATGCCAAATTAAATGGTTTA 58.308 32.000 11.16 1.52 40.23 2.01
420 422 9.307121 CGTGATGCCAAATTAAATGGTTTAATA 57.693 29.630 11.16 0.00 43.14 0.98
458 461 2.751806 GAGAGATGGAAGGCTTGGTTTG 59.248 50.000 3.46 0.00 0.00 2.93
460 463 2.751806 GAGATGGAAGGCTTGGTTTGAG 59.248 50.000 3.46 0.00 0.00 3.02
483 486 3.268013 CGAAAGGCTTGTTTGTGGTAG 57.732 47.619 0.00 0.00 0.00 3.18
484 487 2.616842 CGAAAGGCTTGTTTGTGGTAGT 59.383 45.455 0.00 0.00 0.00 2.73
485 488 3.810941 CGAAAGGCTTGTTTGTGGTAGTA 59.189 43.478 0.00 0.00 0.00 1.82
486 489 4.084013 CGAAAGGCTTGTTTGTGGTAGTAG 60.084 45.833 0.00 0.00 0.00 2.57
487 490 4.432980 AAGGCTTGTTTGTGGTAGTAGT 57.567 40.909 0.00 0.00 0.00 2.73
488 491 5.556006 AAGGCTTGTTTGTGGTAGTAGTA 57.444 39.130 0.00 0.00 0.00 1.82
489 492 4.891260 AGGCTTGTTTGTGGTAGTAGTAC 58.109 43.478 0.00 0.00 0.00 2.73
490 493 4.591924 AGGCTTGTTTGTGGTAGTAGTACT 59.408 41.667 8.14 8.14 0.00 2.73
491 494 5.071384 AGGCTTGTTTGTGGTAGTAGTACTT 59.929 40.000 8.40 0.00 0.00 2.24
492 495 5.407691 GGCTTGTTTGTGGTAGTAGTACTTC 59.592 44.000 8.40 3.00 0.00 3.01
493 496 6.221659 GCTTGTTTGTGGTAGTAGTACTTCT 58.778 40.000 8.40 3.52 0.00 2.85
494 497 6.704937 GCTTGTTTGTGGTAGTAGTACTTCTT 59.295 38.462 8.40 0.00 0.00 2.52
495 498 7.095732 GCTTGTTTGTGGTAGTAGTACTTCTTC 60.096 40.741 8.40 2.56 0.00 2.87
496 499 7.592885 TGTTTGTGGTAGTAGTACTTCTTCT 57.407 36.000 8.40 1.76 0.00 2.85
497 500 8.015185 TGTTTGTGGTAGTAGTACTTCTTCTT 57.985 34.615 8.40 0.00 0.00 2.52
498 501 7.924412 TGTTTGTGGTAGTAGTACTTCTTCTTG 59.076 37.037 8.40 0.00 0.00 3.02
499 502 7.592885 TTGTGGTAGTAGTACTTCTTCTTGT 57.407 36.000 8.40 0.00 0.00 3.16
500 503 7.592885 TGTGGTAGTAGTACTTCTTCTTGTT 57.407 36.000 8.40 0.00 0.00 2.83
501 504 7.431249 TGTGGTAGTAGTACTTCTTCTTGTTG 58.569 38.462 8.40 0.00 0.00 3.33
502 505 7.069085 TGTGGTAGTAGTACTTCTTCTTGTTGT 59.931 37.037 8.40 0.00 0.00 3.32
503 506 7.924947 GTGGTAGTAGTACTTCTTCTTGTTGTT 59.075 37.037 8.40 0.00 0.00 2.83
504 507 7.924412 TGGTAGTAGTACTTCTTCTTGTTGTTG 59.076 37.037 8.40 0.00 0.00 3.33
505 508 7.924947 GGTAGTAGTACTTCTTCTTGTTGTTGT 59.075 37.037 8.40 0.00 0.00 3.32
506 509 9.310716 GTAGTAGTACTTCTTCTTGTTGTTGTT 57.689 33.333 8.40 0.00 0.00 2.83
507 510 8.197988 AGTAGTACTTCTTCTTGTTGTTGTTG 57.802 34.615 0.00 0.00 0.00 3.33
508 511 7.822822 AGTAGTACTTCTTCTTGTTGTTGTTGT 59.177 33.333 0.00 0.00 0.00 3.32
509 512 7.448748 AGTACTTCTTCTTGTTGTTGTTGTT 57.551 32.000 0.00 0.00 0.00 2.83
510 513 7.527457 AGTACTTCTTCTTGTTGTTGTTGTTC 58.473 34.615 0.00 0.00 0.00 3.18
511 514 5.709966 ACTTCTTCTTGTTGTTGTTGTTCC 58.290 37.500 0.00 0.00 0.00 3.62
512 515 5.242838 ACTTCTTCTTGTTGTTGTTGTTCCA 59.757 36.000 0.00 0.00 0.00 3.53
513 516 5.713792 TCTTCTTGTTGTTGTTGTTCCAA 57.286 34.783 0.00 0.00 0.00 3.53
514 517 5.465935 TCTTCTTGTTGTTGTTGTTCCAAC 58.534 37.500 0.22 0.22 43.95 3.77
534 537 6.015856 TCCAACAATAAAAATTTCGCCTCTCA 60.016 34.615 0.00 0.00 0.00 3.27
547 550 4.389374 TCGCCTCTCAAATCTTGTCTTTT 58.611 39.130 0.00 0.00 0.00 2.27
553 556 7.528307 CCTCTCAAATCTTGTCTTTTCATCAG 58.472 38.462 0.00 0.00 0.00 2.90
556 559 8.993121 TCTCAAATCTTGTCTTTTCATCAGTAC 58.007 33.333 0.00 0.00 0.00 2.73
558 561 9.288576 TCAAATCTTGTCTTTTCATCAGTACAT 57.711 29.630 0.00 0.00 0.00 2.29
560 563 8.627208 AATCTTGTCTTTTCATCAGTACATGT 57.373 30.769 2.69 2.69 0.00 3.21
561 564 9.725019 AATCTTGTCTTTTCATCAGTACATGTA 57.275 29.630 0.08 0.08 0.00 2.29
565 568 8.628882 TGTCTTTTCATCAGTACATGTATACG 57.371 34.615 9.18 0.99 0.00 3.06
617 620 2.453521 ACGTGCATACTCCCTCTGTAA 58.546 47.619 0.00 0.00 0.00 2.41
630 634 7.668492 ACTCCCTCTGTAACGGAATATAAATC 58.332 38.462 0.00 0.00 0.00 2.17
631 635 7.001099 TCCCTCTGTAACGGAATATAAATCC 57.999 40.000 0.00 0.00 0.00 3.01
643 647 9.245481 ACGGAATATAAATCCTTTTTGGTGTAA 57.755 29.630 6.42 0.00 34.66 2.41
651 655 4.794334 TCCTTTTTGGTGTAACTGGCTAA 58.206 39.130 0.00 0.00 36.74 3.09
691 696 8.795842 ATAGAGGGAGTATATTTCAGTACGAG 57.204 38.462 0.00 0.00 0.00 4.18
703 708 5.591643 TTCAGTACGAGTGAATTCAAAGC 57.408 39.130 10.35 0.00 32.96 3.51
718 1585 0.827507 AAAGCATTCAACCCACCGCT 60.828 50.000 0.00 0.00 0.00 5.52
734 1601 2.158871 ACCGCTCTGTGTACCTCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
756 1631 4.003788 CGCTCTGTGTTCGGGGGT 62.004 66.667 0.00 0.00 0.00 4.95
757 1632 2.358737 GCTCTGTGTTCGGGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
758 1633 2.879233 GCTCTGTGTTCGGGGGTGA 61.879 63.158 0.00 0.00 0.00 4.02
759 1634 1.983224 CTCTGTGTTCGGGGGTGAT 59.017 57.895 0.00 0.00 0.00 3.06
760 1635 0.324943 CTCTGTGTTCGGGGGTGATT 59.675 55.000 0.00 0.00 0.00 2.57
789 1667 7.792383 TTACGAGACTCTGATTTTAACTTCG 57.208 36.000 0.03 0.00 0.00 3.79
791 1669 6.444633 ACGAGACTCTGATTTTAACTTCGAA 58.555 36.000 0.00 0.00 0.00 3.71
793 1671 7.096147 ACGAGACTCTGATTTTAACTTCGAAAC 60.096 37.037 0.00 0.00 0.00 2.78
794 1672 7.115095 CGAGACTCTGATTTTAACTTCGAAACT 59.885 37.037 0.00 0.00 0.00 2.66
795 1673 9.408069 GAGACTCTGATTTTAACTTCGAAACTA 57.592 33.333 0.00 0.00 0.00 2.24
796 1674 9.194271 AGACTCTGATTTTAACTTCGAAACTAC 57.806 33.333 0.00 0.00 0.00 2.73
797 1675 9.194271 GACTCTGATTTTAACTTCGAAACTACT 57.806 33.333 0.00 0.00 0.00 2.57
798 1676 9.543783 ACTCTGATTTTAACTTCGAAACTACTT 57.456 29.630 0.00 0.00 0.00 2.24
801 1679 9.742552 CTGATTTTAACTTCGAAACTACTTAGC 57.257 33.333 0.00 0.00 0.00 3.09
802 1680 9.263538 TGATTTTAACTTCGAAACTACTTAGCA 57.736 29.630 0.00 0.00 0.00 3.49
805 1683 9.706846 TTTTAACTTCGAAACTACTTAGCAAAC 57.293 29.630 0.00 0.00 0.00 2.93
806 1684 5.571778 ACTTCGAAACTACTTAGCAAACG 57.428 39.130 0.00 0.00 0.00 3.60
807 1685 5.284079 ACTTCGAAACTACTTAGCAAACGA 58.716 37.500 0.00 0.00 0.00 3.85
808 1686 5.174579 ACTTCGAAACTACTTAGCAAACGAC 59.825 40.000 0.00 0.00 0.00 4.34
809 1687 4.609947 TCGAAACTACTTAGCAAACGACA 58.390 39.130 0.00 0.00 0.00 4.35
810 1688 4.442073 TCGAAACTACTTAGCAAACGACAC 59.558 41.667 0.00 0.00 0.00 3.67
811 1689 4.207635 CGAAACTACTTAGCAAACGACACA 59.792 41.667 0.00 0.00 0.00 3.72
812 1690 5.399604 AAACTACTTAGCAAACGACACAC 57.600 39.130 0.00 0.00 0.00 3.82
814 1692 0.580104 ACTTAGCAAACGACACACGC 59.420 50.000 0.00 0.00 46.94 5.34
815 1693 0.859232 CTTAGCAAACGACACACGCT 59.141 50.000 0.00 0.00 46.94 5.07
816 1694 0.579630 TTAGCAAACGACACACGCTG 59.420 50.000 0.00 0.00 46.94 5.18
817 1695 1.218875 TAGCAAACGACACACGCTGG 61.219 55.000 0.00 0.00 46.94 4.85
818 1696 2.052237 CAAACGACACACGCTGGC 60.052 61.111 0.00 0.00 46.94 4.85
819 1697 3.276846 AAACGACACACGCTGGCC 61.277 61.111 0.00 0.00 46.94 5.36
823 1701 2.742372 GACACACGCTGGCCGATT 60.742 61.111 0.00 0.00 41.02 3.34
824 1702 2.281484 ACACACGCTGGCCGATTT 60.281 55.556 0.00 0.00 41.02 2.17
825 1703 2.176546 CACACGCTGGCCGATTTG 59.823 61.111 0.00 0.00 41.02 2.32
826 1704 3.055719 ACACGCTGGCCGATTTGG 61.056 61.111 0.00 0.00 41.02 3.28
827 1705 2.745884 CACGCTGGCCGATTTGGA 60.746 61.111 0.00 0.00 42.00 3.53
828 1706 2.436646 ACGCTGGCCGATTTGGAG 60.437 61.111 0.00 0.00 42.00 3.86
829 1707 2.125147 CGCTGGCCGATTTGGAGA 60.125 61.111 0.00 0.00 42.00 3.71
830 1708 2.464459 CGCTGGCCGATTTGGAGAC 61.464 63.158 0.00 0.00 42.00 3.36
831 1709 2.464459 GCTGGCCGATTTGGAGACG 61.464 63.158 0.00 0.00 42.00 4.18
832 1710 1.218047 CTGGCCGATTTGGAGACGA 59.782 57.895 0.00 0.00 42.00 4.20
833 1711 1.079405 TGGCCGATTTGGAGACGAC 60.079 57.895 0.00 0.00 42.00 4.34
834 1712 1.079405 GGCCGATTTGGAGACGACA 60.079 57.895 0.00 0.00 42.00 4.35
835 1713 1.359459 GGCCGATTTGGAGACGACAC 61.359 60.000 0.00 0.00 42.00 3.67
836 1714 0.389948 GCCGATTTGGAGACGACACT 60.390 55.000 0.00 0.00 42.00 3.55
837 1715 1.135199 GCCGATTTGGAGACGACACTA 60.135 52.381 0.00 0.00 42.00 2.74
838 1716 2.527100 CCGATTTGGAGACGACACTAC 58.473 52.381 0.00 0.00 42.00 2.73
839 1717 2.094906 CCGATTTGGAGACGACACTACA 60.095 50.000 0.00 0.00 42.00 2.74
840 1718 3.428999 CCGATTTGGAGACGACACTACAT 60.429 47.826 0.00 0.00 42.00 2.29
841 1719 3.791887 CGATTTGGAGACGACACTACATC 59.208 47.826 0.00 0.00 30.29 3.06
842 1720 3.587797 TTTGGAGACGACACTACATCC 57.412 47.619 0.00 0.00 30.29 3.51
843 1721 2.209690 TGGAGACGACACTACATCCA 57.790 50.000 0.00 0.00 34.54 3.41
844 1722 2.521126 TGGAGACGACACTACATCCAA 58.479 47.619 0.00 0.00 34.02 3.53
845 1723 3.096852 TGGAGACGACACTACATCCAAT 58.903 45.455 0.00 0.00 34.02 3.16
846 1724 3.119137 TGGAGACGACACTACATCCAATG 60.119 47.826 0.00 0.00 34.02 2.82
847 1725 3.448686 GAGACGACACTACATCCAATGG 58.551 50.000 0.00 0.00 33.60 3.16
848 1726 2.832129 AGACGACACTACATCCAATGGT 59.168 45.455 0.00 0.00 33.60 3.55
849 1727 3.260884 AGACGACACTACATCCAATGGTT 59.739 43.478 0.00 0.00 33.60 3.67
850 1728 3.334691 ACGACACTACATCCAATGGTTG 58.665 45.455 8.70 8.70 33.60 3.77
851 1729 3.244422 ACGACACTACATCCAATGGTTGT 60.244 43.478 18.68 18.68 38.85 3.32
852 1730 3.125146 CGACACTACATCCAATGGTTGTG 59.875 47.826 22.43 15.35 36.45 3.33
853 1731 2.819608 ACACTACATCCAATGGTTGTGC 59.180 45.455 22.43 0.00 36.45 4.57
854 1732 3.084039 CACTACATCCAATGGTTGTGCT 58.916 45.455 22.43 7.39 36.45 4.40
855 1733 4.260985 CACTACATCCAATGGTTGTGCTA 58.739 43.478 22.43 5.46 36.45 3.49
856 1734 4.094887 CACTACATCCAATGGTTGTGCTAC 59.905 45.833 22.43 0.00 36.45 3.58
857 1735 3.153369 ACATCCAATGGTTGTGCTACA 57.847 42.857 14.61 0.00 34.73 2.74
858 1736 3.084039 ACATCCAATGGTTGTGCTACAG 58.916 45.455 14.61 0.00 34.73 2.74
859 1737 2.949177 TCCAATGGTTGTGCTACAGT 57.051 45.000 0.00 0.00 0.00 3.55
860 1738 3.222173 TCCAATGGTTGTGCTACAGTT 57.778 42.857 0.00 0.00 0.00 3.16
861 1739 3.561143 TCCAATGGTTGTGCTACAGTTT 58.439 40.909 0.00 0.00 0.00 2.66
862 1740 4.720046 TCCAATGGTTGTGCTACAGTTTA 58.280 39.130 0.00 0.00 0.00 2.01
863 1741 5.321102 TCCAATGGTTGTGCTACAGTTTAT 58.679 37.500 0.00 0.00 0.00 1.40
864 1742 5.414454 TCCAATGGTTGTGCTACAGTTTATC 59.586 40.000 0.00 0.00 0.00 1.75
865 1743 5.393027 CCAATGGTTGTGCTACAGTTTATCC 60.393 44.000 0.00 0.00 0.00 2.59
866 1744 4.634012 TGGTTGTGCTACAGTTTATCCT 57.366 40.909 0.00 0.00 0.00 3.24
867 1745 4.575885 TGGTTGTGCTACAGTTTATCCTC 58.424 43.478 0.00 0.00 0.00 3.71
868 1746 4.286032 TGGTTGTGCTACAGTTTATCCTCT 59.714 41.667 0.00 0.00 0.00 3.69
869 1747 4.631813 GGTTGTGCTACAGTTTATCCTCTG 59.368 45.833 0.00 0.00 37.65 3.35
870 1748 3.861840 TGTGCTACAGTTTATCCTCTGC 58.138 45.455 0.00 0.00 35.37 4.26
871 1749 3.260632 TGTGCTACAGTTTATCCTCTGCA 59.739 43.478 0.00 0.00 35.37 4.41
872 1750 4.080919 TGTGCTACAGTTTATCCTCTGCAT 60.081 41.667 0.00 0.00 35.37 3.96
873 1751 4.272018 GTGCTACAGTTTATCCTCTGCATG 59.728 45.833 0.00 0.00 35.37 4.06
874 1752 3.812053 GCTACAGTTTATCCTCTGCATGG 59.188 47.826 0.00 0.00 35.37 3.66
875 1753 4.443457 GCTACAGTTTATCCTCTGCATGGA 60.443 45.833 10.46 10.46 38.06 3.41
876 1754 4.785346 ACAGTTTATCCTCTGCATGGAT 57.215 40.909 20.53 20.53 45.37 3.41
877 1755 4.458397 ACAGTTTATCCTCTGCATGGATG 58.542 43.478 23.67 14.55 43.48 3.51
878 1756 3.819337 CAGTTTATCCTCTGCATGGATGG 59.181 47.826 23.67 7.65 43.48 3.51
879 1757 3.461085 AGTTTATCCTCTGCATGGATGGT 59.539 43.478 23.67 8.14 43.48 3.55
880 1758 4.079558 AGTTTATCCTCTGCATGGATGGTT 60.080 41.667 23.67 7.86 43.48 3.67
881 1759 4.524802 TTATCCTCTGCATGGATGGTTT 57.475 40.909 23.67 7.57 43.48 3.27
882 1760 2.133281 TCCTCTGCATGGATGGTTTG 57.867 50.000 4.66 0.00 0.00 2.93
883 1761 1.634973 TCCTCTGCATGGATGGTTTGA 59.365 47.619 4.66 0.00 0.00 2.69
884 1762 2.242965 TCCTCTGCATGGATGGTTTGAT 59.757 45.455 4.66 0.00 0.00 2.57
885 1763 3.028850 CCTCTGCATGGATGGTTTGATT 58.971 45.455 0.00 0.00 0.00 2.57
886 1764 3.181479 CCTCTGCATGGATGGTTTGATTG 60.181 47.826 0.00 0.00 0.00 2.67
887 1765 3.697542 CTCTGCATGGATGGTTTGATTGA 59.302 43.478 0.00 0.00 0.00 2.57
888 1766 3.444742 TCTGCATGGATGGTTTGATTGAC 59.555 43.478 0.00 0.00 0.00 3.18
889 1767 3.163467 TGCATGGATGGTTTGATTGACA 58.837 40.909 0.00 0.00 0.00 3.58
890 1768 3.193903 TGCATGGATGGTTTGATTGACAG 59.806 43.478 0.00 0.00 0.00 3.51
891 1769 3.194116 GCATGGATGGTTTGATTGACAGT 59.806 43.478 0.00 0.00 0.00 3.55
892 1770 4.740268 CATGGATGGTTTGATTGACAGTG 58.260 43.478 0.00 0.00 0.00 3.66
893 1771 3.831323 TGGATGGTTTGATTGACAGTGT 58.169 40.909 0.00 0.00 0.00 3.55
894 1772 3.820467 TGGATGGTTTGATTGACAGTGTC 59.180 43.478 16.68 16.68 0.00 3.67
895 1773 3.120199 GGATGGTTTGATTGACAGTGTCG 60.120 47.826 18.17 0.00 34.95 4.35
896 1774 2.912771 TGGTTTGATTGACAGTGTCGT 58.087 42.857 18.17 9.57 34.95 4.34
897 1775 2.869801 TGGTTTGATTGACAGTGTCGTC 59.130 45.455 18.17 17.59 34.95 4.20
898 1776 2.223377 GGTTTGATTGACAGTGTCGTCC 59.777 50.000 18.17 9.70 34.95 4.79
899 1777 2.163818 TTGATTGACAGTGTCGTCCC 57.836 50.000 18.17 8.05 34.95 4.46
900 1778 1.044611 TGATTGACAGTGTCGTCCCA 58.955 50.000 18.17 10.37 34.95 4.37
901 1779 1.414550 TGATTGACAGTGTCGTCCCAA 59.585 47.619 18.17 7.71 34.95 4.12
902 1780 2.158885 TGATTGACAGTGTCGTCCCAAA 60.159 45.455 18.17 6.37 34.95 3.28
903 1781 2.404923 TTGACAGTGTCGTCCCAAAA 57.595 45.000 18.17 2.49 34.95 2.44
904 1782 2.631160 TGACAGTGTCGTCCCAAAAT 57.369 45.000 18.17 0.00 34.95 1.82
905 1783 2.489971 TGACAGTGTCGTCCCAAAATC 58.510 47.619 18.17 0.00 34.95 2.17
906 1784 1.459592 GACAGTGTCGTCCCAAAATCG 59.540 52.381 7.68 0.00 0.00 3.34
907 1785 0.796312 CAGTGTCGTCCCAAAATCGG 59.204 55.000 0.00 0.00 0.00 4.18
908 1786 0.953960 AGTGTCGTCCCAAAATCGGC 60.954 55.000 0.00 0.00 0.00 5.54
909 1787 0.953960 GTGTCGTCCCAAAATCGGCT 60.954 55.000 0.00 0.00 0.00 5.52
910 1788 0.609151 TGTCGTCCCAAAATCGGCTA 59.391 50.000 0.00 0.00 0.00 3.93
911 1789 1.208535 TGTCGTCCCAAAATCGGCTAT 59.791 47.619 0.00 0.00 0.00 2.97
912 1790 1.597663 GTCGTCCCAAAATCGGCTATG 59.402 52.381 0.00 0.00 0.00 2.23
913 1791 0.307760 CGTCCCAAAATCGGCTATGC 59.692 55.000 0.00 0.00 0.00 3.14
914 1792 1.388547 GTCCCAAAATCGGCTATGCA 58.611 50.000 0.00 0.00 0.00 3.96
915 1793 1.334869 GTCCCAAAATCGGCTATGCAG 59.665 52.381 0.00 0.00 0.00 4.41
924 1802 3.303605 GCTATGCAGCGTCGTCTG 58.696 61.111 10.96 10.96 38.22 3.51
925 1803 1.517257 GCTATGCAGCGTCGTCTGT 60.517 57.895 15.01 3.10 38.22 3.41
926 1804 1.746727 GCTATGCAGCGTCGTCTGTG 61.747 60.000 15.01 1.44 38.22 3.66
927 1805 0.456824 CTATGCAGCGTCGTCTGTGT 60.457 55.000 15.01 8.75 36.49 3.72
928 1806 0.806241 TATGCAGCGTCGTCTGTGTA 59.194 50.000 15.01 8.04 36.49 2.90
929 1807 0.456824 ATGCAGCGTCGTCTGTGTAG 60.457 55.000 15.01 0.00 36.49 2.74
930 1808 2.437343 GCAGCGTCGTCTGTGTAGC 61.437 63.158 15.01 1.16 36.49 3.58
931 1809 1.081442 CAGCGTCGTCTGTGTAGCA 60.081 57.895 8.07 0.00 0.00 3.49
932 1810 1.067743 CAGCGTCGTCTGTGTAGCAG 61.068 60.000 8.07 0.00 46.34 4.24
933 1811 2.437343 GCGTCGTCTGTGTAGCAGC 61.437 63.158 0.00 0.00 44.66 5.25
934 1812 1.081442 CGTCGTCTGTGTAGCAGCA 60.081 57.895 0.00 0.00 44.66 4.41
935 1813 1.337817 CGTCGTCTGTGTAGCAGCAC 61.338 60.000 0.00 4.04 44.66 4.40
936 1814 0.039074 GTCGTCTGTGTAGCAGCACT 60.039 55.000 11.09 0.00 44.66 4.40
937 1815 0.241213 TCGTCTGTGTAGCAGCACTC 59.759 55.000 11.09 0.00 44.66 3.51
938 1816 0.242286 CGTCTGTGTAGCAGCACTCT 59.758 55.000 11.09 0.00 44.66 3.24
939 1817 1.336332 CGTCTGTGTAGCAGCACTCTT 60.336 52.381 11.09 0.00 44.66 2.85
940 1818 2.760374 GTCTGTGTAGCAGCACTCTTT 58.240 47.619 11.09 0.00 44.66 2.52
941 1819 3.134458 GTCTGTGTAGCAGCACTCTTTT 58.866 45.455 11.09 0.00 44.66 2.27
942 1820 4.307432 GTCTGTGTAGCAGCACTCTTTTA 58.693 43.478 11.09 0.00 44.66 1.52
943 1821 4.750098 GTCTGTGTAGCAGCACTCTTTTAA 59.250 41.667 11.09 0.00 44.66 1.52
944 1822 4.750098 TCTGTGTAGCAGCACTCTTTTAAC 59.250 41.667 11.09 0.00 44.66 2.01
945 1823 4.703897 TGTGTAGCAGCACTCTTTTAACT 58.296 39.130 11.09 0.00 39.89 2.24
946 1824 5.123227 TGTGTAGCAGCACTCTTTTAACTT 58.877 37.500 11.09 0.00 39.89 2.66
947 1825 5.236478 TGTGTAGCAGCACTCTTTTAACTTC 59.764 40.000 11.09 0.00 39.89 3.01
948 1826 4.755123 TGTAGCAGCACTCTTTTAACTTCC 59.245 41.667 0.00 0.00 0.00 3.46
949 1827 3.820557 AGCAGCACTCTTTTAACTTCCA 58.179 40.909 0.00 0.00 0.00 3.53
950 1828 3.565902 AGCAGCACTCTTTTAACTTCCAC 59.434 43.478 0.00 0.00 0.00 4.02
951 1829 3.315191 GCAGCACTCTTTTAACTTCCACA 59.685 43.478 0.00 0.00 0.00 4.17
952 1830 4.202010 GCAGCACTCTTTTAACTTCCACAA 60.202 41.667 0.00 0.00 0.00 3.33
953 1831 5.273944 CAGCACTCTTTTAACTTCCACAAC 58.726 41.667 0.00 0.00 0.00 3.32
954 1832 4.947388 AGCACTCTTTTAACTTCCACAACA 59.053 37.500 0.00 0.00 0.00 3.33
955 1833 5.417580 AGCACTCTTTTAACTTCCACAACAA 59.582 36.000 0.00 0.00 0.00 2.83
956 1834 5.515270 GCACTCTTTTAACTTCCACAACAAC 59.485 40.000 0.00 0.00 0.00 3.32
957 1835 6.033966 CACTCTTTTAACTTCCACAACAACC 58.966 40.000 0.00 0.00 0.00 3.77
958 1836 5.126545 ACTCTTTTAACTTCCACAACAACCC 59.873 40.000 0.00 0.00 0.00 4.11
959 1837 5.017490 TCTTTTAACTTCCACAACAACCCA 58.983 37.500 0.00 0.00 0.00 4.51
960 1838 4.993029 TTTAACTTCCACAACAACCCAG 57.007 40.909 0.00 0.00 0.00 4.45
961 1839 1.775385 AACTTCCACAACAACCCAGG 58.225 50.000 0.00 0.00 0.00 4.45
962 1840 0.629058 ACTTCCACAACAACCCAGGT 59.371 50.000 0.00 0.00 0.00 4.00
963 1841 1.032014 CTTCCACAACAACCCAGGTG 58.968 55.000 0.00 0.00 0.00 4.00
964 1842 0.333312 TTCCACAACAACCCAGGTGT 59.667 50.000 0.00 0.00 0.00 4.16
965 1843 0.395036 TCCACAACAACCCAGGTGTG 60.395 55.000 5.20 5.20 0.00 3.82
966 1844 0.682855 CCACAACAACCCAGGTGTGT 60.683 55.000 10.76 3.72 0.00 3.72
967 1845 0.738389 CACAACAACCCAGGTGTGTC 59.262 55.000 4.07 0.00 0.00 3.67
968 1846 0.329931 ACAACAACCCAGGTGTGTCA 59.670 50.000 0.00 0.00 0.00 3.58
989 1867 4.308458 CGTGGCGACCCAACTCCA 62.308 66.667 0.00 0.00 44.33 3.86
1411 2323 6.240549 ACATCTGTAGTGATTTCCCCTTAG 57.759 41.667 0.00 0.00 0.00 2.18
1524 2439 3.097877 TGCGTGATCTTATAGCACTGG 57.902 47.619 0.00 0.00 42.49 4.00
1558 2474 3.386402 AGAGAAGGGGAGAAAAGCTATCG 59.614 47.826 0.00 0.00 0.00 2.92
1879 2797 2.614057 CCGCCACTATTCCTCATCAAAC 59.386 50.000 0.00 0.00 0.00 2.93
1900 2818 7.170998 TCAAACGTTTGTTTTGGTATTGTGTTT 59.829 29.630 33.42 0.00 45.89 2.83
1954 2872 3.372440 AATGGCTTTGGAACTAGGAGG 57.628 47.619 0.00 0.00 0.00 4.30
1959 2877 3.971971 GGCTTTGGAACTAGGAGGGTATA 59.028 47.826 0.00 0.00 0.00 1.47
2277 3195 5.469479 AGCAATAAAAATTCCACCTGTTCG 58.531 37.500 0.00 0.00 0.00 3.95
2304 3222 7.823149 TTCTGTTAGCGTTTTTAGGAGTATC 57.177 36.000 0.00 0.00 0.00 2.24
2325 3250 4.951254 TCGTTACTCCAGAAACACAATCA 58.049 39.130 0.00 0.00 0.00 2.57
2450 3375 7.536964 CACATGAATAGTGTCGCAAAATTGTTA 59.463 33.333 0.00 0.00 32.44 2.41
2455 3380 1.874231 TGTCGCAAAATTGTTAGCCGA 59.126 42.857 0.00 0.00 0.00 5.54
2599 3524 7.849804 TCTTTTGTTCATAGAGAATGTAGGC 57.150 36.000 0.00 0.00 38.76 3.93
2652 3578 8.940397 ACCAAAATGACCCAAAGATATATAGG 57.060 34.615 0.00 0.00 0.00 2.57
2731 3688 3.127895 TGACACTGTACAACAACAAAGCC 59.872 43.478 0.00 0.00 0.00 4.35
2842 3799 8.870160 TGCATGTATAATTGGAATTAAACAGC 57.130 30.769 0.00 0.00 34.79 4.40
2911 3868 5.131594 ACAAAAACCTCTCTAGTACGTCC 57.868 43.478 0.00 0.00 0.00 4.79
2925 3882 7.207383 TCTAGTACGTCCATGAATAAATGTGG 58.793 38.462 0.00 0.00 0.00 4.17
2943 3900 4.688021 TGTGGAACATACAAAACTTTGGC 58.312 39.130 7.09 0.00 45.67 4.52
2973 3930 9.750125 CTTTAAAGTTTGACCAAGATAGCTTTT 57.250 29.630 7.07 0.00 30.14 2.27
3017 3974 7.384439 TCTTCACAAATGTTACACACTCAAA 57.616 32.000 0.00 0.00 0.00 2.69
3190 4147 0.536006 AAGCGCTTGAAGCAGTTCCT 60.536 50.000 24.40 2.06 42.58 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.239217 TGTGGATTGTGTAGCTTAGATGAT 57.761 37.500 0.00 0.00 0.00 2.45
37 38 7.465353 TCAATATCATTGTTGTGGATTGTGT 57.535 32.000 0.00 0.00 31.00 3.72
38 39 8.936070 AATCAATATCATTGTTGTGGATTGTG 57.064 30.769 0.00 0.00 31.00 3.33
43 44 9.685276 ACTTCTAATCAATATCATTGTTGTGGA 57.315 29.630 0.00 0.00 0.00 4.02
59 60 9.589461 CCTAACCTAAGGATCTACTTCTAATCA 57.411 37.037 0.00 0.00 39.15 2.57
95 96 9.498176 AATTGTTTATAACTTACTCTTGTCGGT 57.502 29.630 0.00 0.00 0.00 4.69
130 132 4.962362 TGATGCTTCTTGAGGTCCTATACA 59.038 41.667 0.00 0.00 0.00 2.29
132 134 5.211973 AGTGATGCTTCTTGAGGTCCTATA 58.788 41.667 0.00 0.00 0.00 1.31
156 158 3.897505 ACACCTAAACCACCTTACTACGT 59.102 43.478 0.00 0.00 0.00 3.57
158 160 5.219343 ACACACCTAAACCACCTTACTAC 57.781 43.478 0.00 0.00 0.00 2.73
162 164 4.774660 TTGACACACCTAAACCACCTTA 57.225 40.909 0.00 0.00 0.00 2.69
163 165 3.655615 TTGACACACCTAAACCACCTT 57.344 42.857 0.00 0.00 0.00 3.50
181 183 9.850628 TCTATCCCGACGTCTTTTATAATATTG 57.149 33.333 14.70 0.00 0.00 1.90
182 184 9.852091 GTCTATCCCGACGTCTTTTATAATATT 57.148 33.333 14.70 0.00 0.00 1.28
186 188 5.593909 TGGTCTATCCCGACGTCTTTTATAA 59.406 40.000 14.70 0.00 34.75 0.98
188 190 3.956199 TGGTCTATCCCGACGTCTTTTAT 59.044 43.478 14.70 4.56 34.75 1.40
192 194 1.843368 TTGGTCTATCCCGACGTCTT 58.157 50.000 14.70 0.00 34.75 3.01
196 198 2.667473 AAGTTTGGTCTATCCCGACG 57.333 50.000 0.00 0.00 34.75 5.12
198 200 5.424757 CATGTTAAGTTTGGTCTATCCCGA 58.575 41.667 0.00 0.00 34.77 5.14
199 201 4.035208 GCATGTTAAGTTTGGTCTATCCCG 59.965 45.833 0.00 0.00 34.77 5.14
222 224 3.844577 TCTCTTTTTACGGACTCCTCG 57.155 47.619 0.00 0.00 0.00 4.63
237 239 9.171877 GTGACATTTCAATCCTTTAGATCTCTT 57.828 33.333 0.00 0.00 32.47 2.85
239 241 7.554118 TGGTGACATTTCAATCCTTTAGATCTC 59.446 37.037 0.00 0.00 30.64 2.75
244 246 7.885297 TCTTTGGTGACATTTCAATCCTTTAG 58.115 34.615 0.00 0.00 42.32 1.85
249 251 9.305925 GATAAATCTTTGGTGACATTTCAATCC 57.694 33.333 0.00 0.00 42.32 3.01
259 261 8.738645 AAGTCTATGGATAAATCTTTGGTGAC 57.261 34.615 0.00 0.00 0.00 3.67
263 265 8.213679 TCCTGAAGTCTATGGATAAATCTTTGG 58.786 37.037 0.00 0.00 0.00 3.28
279 281 4.349342 AGAAATGAACACCTCCTGAAGTCT 59.651 41.667 0.00 0.00 0.00 3.24
281 283 4.103153 TGAGAAATGAACACCTCCTGAAGT 59.897 41.667 0.00 0.00 0.00 3.01
285 287 4.013267 AGTGAGAAATGAACACCTCCTG 57.987 45.455 0.00 0.00 35.47 3.86
300 302 1.007118 TCCTCAGGCCATGTAGTGAGA 59.993 52.381 16.80 3.16 39.04 3.27
307 309 1.848388 TCAATCATCCTCAGGCCATGT 59.152 47.619 5.01 0.00 0.00 3.21
308 310 2.105993 TCTCAATCATCCTCAGGCCATG 59.894 50.000 5.01 0.00 0.00 3.66
324 326 5.462530 TGGTCTTGACGACTTTATCTCAA 57.537 39.130 0.00 0.00 42.44 3.02
328 330 4.566987 AGGTTGGTCTTGACGACTTTATC 58.433 43.478 0.00 0.00 42.44 1.75
334 336 2.410939 GGTAAGGTTGGTCTTGACGAC 58.589 52.381 0.00 0.00 42.07 4.34
337 339 2.825861 TCGGTAAGGTTGGTCTTGAC 57.174 50.000 0.00 0.00 0.00 3.18
339 341 5.065988 CCATAATTCGGTAAGGTTGGTCTTG 59.934 44.000 0.00 0.00 0.00 3.02
365 367 1.795768 ATATACATGCTTGGCGACGG 58.204 50.000 4.44 0.00 0.00 4.79
366 368 2.923655 CCTATATACATGCTTGGCGACG 59.076 50.000 4.44 0.00 0.00 5.12
393 395 4.799564 ACCATTTAATTTGGCATCACGT 57.200 36.364 5.15 0.00 37.81 4.49
394 396 7.588143 TTAAACCATTTAATTTGGCATCACG 57.412 32.000 5.15 0.00 37.81 4.35
423 425 8.768955 CCTTCCATCTCTCTTTACGAAATATTG 58.231 37.037 0.00 0.00 0.00 1.90
432 434 4.195416 CCAAGCCTTCCATCTCTCTTTAC 58.805 47.826 0.00 0.00 0.00 2.01
458 461 1.947456 ACAAACAAGCCTTTCGGTCTC 59.053 47.619 0.00 0.00 0.00 3.36
460 463 1.269051 CCACAAACAAGCCTTTCGGTC 60.269 52.381 0.00 0.00 0.00 4.79
463 466 2.616842 ACTACCACAAACAAGCCTTTCG 59.383 45.455 0.00 0.00 0.00 3.46
465 468 4.788679 ACTACTACCACAAACAAGCCTTT 58.211 39.130 0.00 0.00 0.00 3.11
466 469 4.432980 ACTACTACCACAAACAAGCCTT 57.567 40.909 0.00 0.00 0.00 4.35
467 470 4.591924 AGTACTACTACCACAAACAAGCCT 59.408 41.667 0.00 0.00 0.00 4.58
468 471 4.891260 AGTACTACTACCACAAACAAGCC 58.109 43.478 0.00 0.00 0.00 4.35
469 472 6.221659 AGAAGTACTACTACCACAAACAAGC 58.778 40.000 0.00 0.00 0.00 4.01
470 473 8.142551 AGAAGAAGTACTACTACCACAAACAAG 58.857 37.037 0.00 0.00 0.00 3.16
471 474 8.015185 AGAAGAAGTACTACTACCACAAACAA 57.985 34.615 0.00 0.00 0.00 2.83
472 475 7.592885 AGAAGAAGTACTACTACCACAAACA 57.407 36.000 0.00 0.00 0.00 2.83
473 476 7.924947 ACAAGAAGAAGTACTACTACCACAAAC 59.075 37.037 0.00 0.00 0.00 2.93
474 477 8.015185 ACAAGAAGAAGTACTACTACCACAAA 57.985 34.615 0.00 0.00 0.00 2.83
475 478 7.592885 ACAAGAAGAAGTACTACTACCACAA 57.407 36.000 0.00 0.00 0.00 3.33
476 479 7.069085 ACAACAAGAAGAAGTACTACTACCACA 59.931 37.037 0.00 0.00 0.00 4.17
477 480 7.432059 ACAACAAGAAGAAGTACTACTACCAC 58.568 38.462 0.00 0.00 0.00 4.16
478 481 7.592885 ACAACAAGAAGAAGTACTACTACCA 57.407 36.000 0.00 0.00 0.00 3.25
479 482 7.924947 ACAACAACAAGAAGAAGTACTACTACC 59.075 37.037 0.00 0.00 0.00 3.18
480 483 8.868635 ACAACAACAAGAAGAAGTACTACTAC 57.131 34.615 0.00 0.00 0.00 2.73
481 484 9.309516 CAACAACAACAAGAAGAAGTACTACTA 57.690 33.333 0.00 0.00 0.00 1.82
482 485 7.822822 ACAACAACAACAAGAAGAAGTACTACT 59.177 33.333 0.00 0.00 0.00 2.57
483 486 7.971455 ACAACAACAACAAGAAGAAGTACTAC 58.029 34.615 0.00 0.00 0.00 2.73
484 487 8.556213 AACAACAACAACAAGAAGAAGTACTA 57.444 30.769 0.00 0.00 0.00 1.82
485 488 7.361799 GGAACAACAACAACAAGAAGAAGTACT 60.362 37.037 0.00 0.00 0.00 2.73
486 489 6.745907 GGAACAACAACAACAAGAAGAAGTAC 59.254 38.462 0.00 0.00 0.00 2.73
487 490 6.431543 TGGAACAACAACAACAAGAAGAAGTA 59.568 34.615 0.00 0.00 31.92 2.24
488 491 5.242838 TGGAACAACAACAACAAGAAGAAGT 59.757 36.000 0.00 0.00 31.92 3.01
489 492 5.708948 TGGAACAACAACAACAAGAAGAAG 58.291 37.500 0.00 0.00 31.92 2.85
490 493 5.713792 TGGAACAACAACAACAAGAAGAA 57.286 34.783 0.00 0.00 31.92 2.52
506 509 6.284459 AGGCGAAATTTTTATTGTTGGAACA 58.716 32.000 0.00 0.00 37.08 3.18
507 510 6.645003 AGAGGCGAAATTTTTATTGTTGGAAC 59.355 34.615 0.00 0.00 0.00 3.62
508 511 6.754193 AGAGGCGAAATTTTTATTGTTGGAA 58.246 32.000 0.00 0.00 0.00 3.53
509 512 6.015856 TGAGAGGCGAAATTTTTATTGTTGGA 60.016 34.615 0.00 0.00 0.00 3.53
510 513 6.155827 TGAGAGGCGAAATTTTTATTGTTGG 58.844 36.000 0.00 0.00 0.00 3.77
511 514 7.636259 TTGAGAGGCGAAATTTTTATTGTTG 57.364 32.000 0.00 0.00 0.00 3.33
512 515 8.831715 ATTTGAGAGGCGAAATTTTTATTGTT 57.168 26.923 0.00 0.00 0.00 2.83
513 516 8.306761 AGATTTGAGAGGCGAAATTTTTATTGT 58.693 29.630 0.00 0.00 0.00 2.71
514 517 8.693542 AGATTTGAGAGGCGAAATTTTTATTG 57.306 30.769 0.00 0.00 0.00 1.90
515 518 9.143631 CAAGATTTGAGAGGCGAAATTTTTATT 57.856 29.630 0.00 0.00 0.00 1.40
516 519 8.306761 ACAAGATTTGAGAGGCGAAATTTTTAT 58.693 29.630 0.00 0.00 0.00 1.40
517 520 7.657336 ACAAGATTTGAGAGGCGAAATTTTTA 58.343 30.769 0.00 0.00 0.00 1.52
518 521 6.515832 ACAAGATTTGAGAGGCGAAATTTTT 58.484 32.000 0.00 0.00 0.00 1.94
527 530 5.695851 TGAAAAGACAAGATTTGAGAGGC 57.304 39.130 0.00 0.00 0.00 4.70
534 537 9.071276 ACATGTACTGATGAAAAGACAAGATTT 57.929 29.630 0.00 0.00 0.00 2.17
598 601 2.794981 CGTTACAGAGGGAGTATGCACG 60.795 54.545 0.00 0.00 0.00 5.34
617 620 7.712204 ACACCAAAAAGGATTTATATTCCGT 57.288 32.000 0.00 0.00 37.28 4.69
630 634 5.523438 TTTAGCCAGTTACACCAAAAAGG 57.477 39.130 0.00 0.00 45.67 3.11
664 668 9.887629 TCGTACTGAAATATACTCCCTCTATAG 57.112 37.037 0.00 0.00 0.00 1.31
666 670 8.384718 ACTCGTACTGAAATATACTCCCTCTAT 58.615 37.037 0.00 0.00 0.00 1.98
667 671 7.660617 CACTCGTACTGAAATATACTCCCTCTA 59.339 40.741 0.00 0.00 0.00 2.43
681 686 5.053811 TGCTTTGAATTCACTCGTACTGAA 58.946 37.500 7.89 0.00 32.24 3.02
691 696 4.448732 GTGGGTTGAATGCTTTGAATTCAC 59.551 41.667 7.89 0.00 42.28 3.18
703 708 0.606401 ACAGAGCGGTGGGTTGAATG 60.606 55.000 0.00 0.00 0.00 2.67
734 1601 0.661020 CCCGAACACAGAGCGTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
739 1606 4.003788 ACCCCCGAACACAGAGCG 62.004 66.667 0.00 0.00 0.00 5.03
766 1644 7.137490 TCGAAGTTAAAATCAGAGTCTCGTA 57.863 36.000 0.00 0.00 0.00 3.43
785 1663 5.174398 TGTCGTTTGCTAAGTAGTTTCGAAG 59.826 40.000 0.00 0.00 0.00 3.79
789 1667 5.429615 GTGTGTCGTTTGCTAAGTAGTTTC 58.570 41.667 0.00 0.00 0.00 2.78
791 1669 3.488310 CGTGTGTCGTTTGCTAAGTAGTT 59.512 43.478 0.00 0.00 34.52 2.24
793 1671 2.160013 GCGTGTGTCGTTTGCTAAGTAG 60.160 50.000 0.00 0.00 42.13 2.57
794 1672 1.788308 GCGTGTGTCGTTTGCTAAGTA 59.212 47.619 0.00 0.00 42.13 2.24
795 1673 0.580104 GCGTGTGTCGTTTGCTAAGT 59.420 50.000 0.00 0.00 42.13 2.24
796 1674 0.859232 AGCGTGTGTCGTTTGCTAAG 59.141 50.000 0.00 0.00 42.13 2.18
797 1675 0.579630 CAGCGTGTGTCGTTTGCTAA 59.420 50.000 0.00 0.00 42.13 3.09
798 1676 1.218875 CCAGCGTGTGTCGTTTGCTA 61.219 55.000 0.00 0.00 42.13 3.49
799 1677 2.534019 CCAGCGTGTGTCGTTTGCT 61.534 57.895 0.00 0.00 42.13 3.91
800 1678 2.052237 CCAGCGTGTGTCGTTTGC 60.052 61.111 0.00 0.00 42.13 3.68
801 1679 2.052237 GCCAGCGTGTGTCGTTTG 60.052 61.111 0.00 0.00 42.13 2.93
802 1680 3.276846 GGCCAGCGTGTGTCGTTT 61.277 61.111 0.00 0.00 42.13 3.60
806 1684 2.325082 AAATCGGCCAGCGTGTGTC 61.325 57.895 2.24 0.00 0.00 3.67
807 1685 2.281484 AAATCGGCCAGCGTGTGT 60.281 55.556 2.24 0.00 0.00 3.72
808 1686 2.176546 CAAATCGGCCAGCGTGTG 59.823 61.111 2.24 0.00 0.00 3.82
809 1687 3.055719 CCAAATCGGCCAGCGTGT 61.056 61.111 2.24 0.00 0.00 4.49
810 1688 2.745884 TCCAAATCGGCCAGCGTG 60.746 61.111 2.24 0.00 33.14 5.34
811 1689 2.436646 CTCCAAATCGGCCAGCGT 60.437 61.111 2.24 0.00 33.14 5.07
812 1690 2.125147 TCTCCAAATCGGCCAGCG 60.125 61.111 2.24 0.00 33.14 5.18
813 1691 2.464459 CGTCTCCAAATCGGCCAGC 61.464 63.158 2.24 0.00 33.14 4.85
814 1692 1.084370 GTCGTCTCCAAATCGGCCAG 61.084 60.000 2.24 0.00 33.14 4.85
815 1693 1.079405 GTCGTCTCCAAATCGGCCA 60.079 57.895 2.24 0.00 33.14 5.36
816 1694 1.079405 TGTCGTCTCCAAATCGGCC 60.079 57.895 0.00 0.00 33.14 6.13
817 1695 0.389948 AGTGTCGTCTCCAAATCGGC 60.390 55.000 0.00 0.00 33.14 5.54
818 1696 2.094906 TGTAGTGTCGTCTCCAAATCGG 60.095 50.000 0.00 0.00 0.00 4.18
819 1697 3.211803 TGTAGTGTCGTCTCCAAATCG 57.788 47.619 0.00 0.00 0.00 3.34
820 1698 4.113354 GGATGTAGTGTCGTCTCCAAATC 58.887 47.826 0.00 0.00 0.00 2.17
821 1699 3.513912 TGGATGTAGTGTCGTCTCCAAAT 59.486 43.478 0.00 0.00 30.15 2.32
822 1700 2.894765 TGGATGTAGTGTCGTCTCCAAA 59.105 45.455 0.00 0.00 30.15 3.28
823 1701 2.521126 TGGATGTAGTGTCGTCTCCAA 58.479 47.619 0.00 0.00 30.15 3.53
824 1702 2.209690 TGGATGTAGTGTCGTCTCCA 57.790 50.000 0.00 0.00 0.00 3.86
825 1703 3.448686 CATTGGATGTAGTGTCGTCTCC 58.551 50.000 0.00 0.00 0.00 3.71
826 1704 3.119101 ACCATTGGATGTAGTGTCGTCTC 60.119 47.826 10.37 0.00 0.00 3.36
827 1705 2.832129 ACCATTGGATGTAGTGTCGTCT 59.168 45.455 10.37 0.00 0.00 4.18
828 1706 3.247006 ACCATTGGATGTAGTGTCGTC 57.753 47.619 10.37 0.00 0.00 4.20
829 1707 3.244422 ACAACCATTGGATGTAGTGTCGT 60.244 43.478 16.24 0.00 36.95 4.34
830 1708 3.125146 CACAACCATTGGATGTAGTGTCG 59.875 47.826 17.19 1.97 36.57 4.35
831 1709 3.119849 GCACAACCATTGGATGTAGTGTC 60.120 47.826 17.19 2.98 36.57 3.67
832 1710 2.819608 GCACAACCATTGGATGTAGTGT 59.180 45.455 17.19 5.05 36.57 3.55
833 1711 3.084039 AGCACAACCATTGGATGTAGTG 58.916 45.455 17.19 13.45 36.57 2.74
834 1712 3.439857 AGCACAACCATTGGATGTAGT 57.560 42.857 17.19 6.01 36.57 2.73
835 1713 4.260985 TGTAGCACAACCATTGGATGTAG 58.739 43.478 17.19 12.76 36.57 2.74
836 1714 4.260985 CTGTAGCACAACCATTGGATGTA 58.739 43.478 17.19 0.98 36.57 2.29
837 1715 3.084039 CTGTAGCACAACCATTGGATGT 58.916 45.455 12.47 12.47 39.28 3.06
838 1716 3.084039 ACTGTAGCACAACCATTGGATG 58.916 45.455 10.37 10.80 34.12 3.51
839 1717 3.439857 ACTGTAGCACAACCATTGGAT 57.560 42.857 10.37 0.00 34.12 3.41
840 1718 2.949177 ACTGTAGCACAACCATTGGA 57.051 45.000 10.37 0.00 34.12 3.53
841 1719 5.393027 GGATAAACTGTAGCACAACCATTGG 60.393 44.000 0.00 0.00 34.12 3.16
842 1720 5.415701 AGGATAAACTGTAGCACAACCATTG 59.584 40.000 0.00 0.00 0.00 2.82
843 1721 5.570320 AGGATAAACTGTAGCACAACCATT 58.430 37.500 0.00 0.00 0.00 3.16
844 1722 5.045578 AGAGGATAAACTGTAGCACAACCAT 60.046 40.000 0.00 0.00 0.00 3.55
845 1723 4.286032 AGAGGATAAACTGTAGCACAACCA 59.714 41.667 0.00 0.00 0.00 3.67
846 1724 4.631813 CAGAGGATAAACTGTAGCACAACC 59.368 45.833 0.00 0.00 0.00 3.77
847 1725 4.093556 GCAGAGGATAAACTGTAGCACAAC 59.906 45.833 0.00 0.00 36.62 3.32
848 1726 4.253685 GCAGAGGATAAACTGTAGCACAA 58.746 43.478 0.00 0.00 36.62 3.33
849 1727 3.260632 TGCAGAGGATAAACTGTAGCACA 59.739 43.478 0.00 0.00 36.62 4.57
850 1728 3.861840 TGCAGAGGATAAACTGTAGCAC 58.138 45.455 0.00 0.00 36.62 4.40
851 1729 4.445453 CATGCAGAGGATAAACTGTAGCA 58.555 43.478 0.00 0.00 36.62 3.49
852 1730 3.812053 CCATGCAGAGGATAAACTGTAGC 59.188 47.826 1.80 0.00 36.62 3.58
853 1731 5.282055 TCCATGCAGAGGATAAACTGTAG 57.718 43.478 6.58 0.00 36.62 2.74
854 1732 5.455183 CCATCCATGCAGAGGATAAACTGTA 60.455 44.000 19.72 0.00 43.90 2.74
855 1733 4.458397 CATCCATGCAGAGGATAAACTGT 58.542 43.478 19.72 0.00 43.90 3.55
856 1734 3.819337 CCATCCATGCAGAGGATAAACTG 59.181 47.826 19.72 10.96 43.90 3.16
857 1735 3.461085 ACCATCCATGCAGAGGATAAACT 59.539 43.478 19.72 0.07 43.90 2.66
858 1736 3.825328 ACCATCCATGCAGAGGATAAAC 58.175 45.455 19.72 0.00 43.90 2.01
859 1737 4.524802 AACCATCCATGCAGAGGATAAA 57.475 40.909 19.72 0.00 43.90 1.40
860 1738 4.079844 TCAAACCATCCATGCAGAGGATAA 60.080 41.667 19.72 0.00 43.90 1.75
861 1739 3.459227 TCAAACCATCCATGCAGAGGATA 59.541 43.478 19.72 4.45 43.90 2.59
862 1740 2.242965 TCAAACCATCCATGCAGAGGAT 59.757 45.455 15.72 15.72 46.61 3.24
863 1741 1.634973 TCAAACCATCCATGCAGAGGA 59.365 47.619 12.56 12.56 39.97 3.71
864 1742 2.133281 TCAAACCATCCATGCAGAGG 57.867 50.000 1.59 1.59 0.00 3.69
865 1743 3.697542 TCAATCAAACCATCCATGCAGAG 59.302 43.478 0.00 0.00 0.00 3.35
866 1744 3.444742 GTCAATCAAACCATCCATGCAGA 59.555 43.478 0.00 0.00 0.00 4.26
867 1745 3.193903 TGTCAATCAAACCATCCATGCAG 59.806 43.478 0.00 0.00 0.00 4.41
868 1746 3.163467 TGTCAATCAAACCATCCATGCA 58.837 40.909 0.00 0.00 0.00 3.96
869 1747 3.194116 ACTGTCAATCAAACCATCCATGC 59.806 43.478 0.00 0.00 0.00 4.06
870 1748 4.219070 ACACTGTCAATCAAACCATCCATG 59.781 41.667 0.00 0.00 0.00 3.66
871 1749 4.410099 ACACTGTCAATCAAACCATCCAT 58.590 39.130 0.00 0.00 0.00 3.41
872 1750 3.820467 GACACTGTCAATCAAACCATCCA 59.180 43.478 4.17 0.00 32.09 3.41
873 1751 3.120199 CGACACTGTCAATCAAACCATCC 60.120 47.826 9.84 0.00 32.09 3.51
874 1752 3.498397 ACGACACTGTCAATCAAACCATC 59.502 43.478 9.84 0.00 32.09 3.51
875 1753 3.476552 ACGACACTGTCAATCAAACCAT 58.523 40.909 9.84 0.00 32.09 3.55
876 1754 2.869801 GACGACACTGTCAATCAAACCA 59.130 45.455 9.84 0.00 38.75 3.67
877 1755 2.223377 GGACGACACTGTCAATCAAACC 59.777 50.000 9.84 0.00 40.72 3.27
878 1756 2.223377 GGGACGACACTGTCAATCAAAC 59.777 50.000 9.84 0.00 40.72 2.93
879 1757 2.158885 TGGGACGACACTGTCAATCAAA 60.159 45.455 9.84 0.00 40.72 2.69
880 1758 1.414550 TGGGACGACACTGTCAATCAA 59.585 47.619 9.84 0.00 40.72 2.57
881 1759 1.044611 TGGGACGACACTGTCAATCA 58.955 50.000 9.84 0.00 40.72 2.57
882 1760 2.163818 TTGGGACGACACTGTCAATC 57.836 50.000 9.84 6.03 40.72 2.67
883 1761 2.631160 TTTGGGACGACACTGTCAAT 57.369 45.000 9.84 0.00 40.72 2.57
884 1762 2.404923 TTTTGGGACGACACTGTCAA 57.595 45.000 9.84 0.00 40.72 3.18
885 1763 2.489971 GATTTTGGGACGACACTGTCA 58.510 47.619 9.84 0.00 40.72 3.58
886 1764 1.459592 CGATTTTGGGACGACACTGTC 59.540 52.381 0.00 0.00 38.17 3.51
887 1765 1.508632 CGATTTTGGGACGACACTGT 58.491 50.000 0.00 0.00 0.00 3.55
888 1766 0.796312 CCGATTTTGGGACGACACTG 59.204 55.000 0.00 0.00 0.00 3.66
889 1767 0.953960 GCCGATTTTGGGACGACACT 60.954 55.000 0.00 0.00 0.00 3.55
890 1768 0.953960 AGCCGATTTTGGGACGACAC 60.954 55.000 0.00 0.00 0.00 3.67
891 1769 0.609151 TAGCCGATTTTGGGACGACA 59.391 50.000 0.00 0.00 0.00 4.35
892 1770 1.597663 CATAGCCGATTTTGGGACGAC 59.402 52.381 0.00 0.00 0.00 4.34
893 1771 1.948104 CATAGCCGATTTTGGGACGA 58.052 50.000 0.00 0.00 0.00 4.20
894 1772 0.307760 GCATAGCCGATTTTGGGACG 59.692 55.000 0.00 0.00 0.00 4.79
895 1773 1.334869 CTGCATAGCCGATTTTGGGAC 59.665 52.381 0.00 0.00 0.00 4.46
896 1774 1.679139 CTGCATAGCCGATTTTGGGA 58.321 50.000 0.00 0.00 0.00 4.37
897 1775 0.031178 GCTGCATAGCCGATTTTGGG 59.969 55.000 0.00 0.00 44.33 4.12
898 1776 3.557207 GCTGCATAGCCGATTTTGG 57.443 52.632 0.00 0.00 44.33 3.28
907 1785 1.517257 ACAGACGACGCTGCATAGC 60.517 57.895 15.95 0.00 46.62 2.97
908 1786 0.456824 ACACAGACGACGCTGCATAG 60.457 55.000 15.95 8.64 39.51 2.23
909 1787 0.806241 TACACAGACGACGCTGCATA 59.194 50.000 15.95 8.34 39.51 3.14
910 1788 0.456824 CTACACAGACGACGCTGCAT 60.457 55.000 15.95 9.09 39.51 3.96
911 1789 1.081442 CTACACAGACGACGCTGCA 60.081 57.895 15.95 0.00 39.51 4.41
912 1790 2.437343 GCTACACAGACGACGCTGC 61.437 63.158 15.95 0.00 39.51 5.25
913 1791 1.081442 TGCTACACAGACGACGCTG 60.081 57.895 14.87 14.87 41.63 5.18
914 1792 3.351450 TGCTACACAGACGACGCT 58.649 55.556 0.00 0.00 0.00 5.07
923 1801 4.703897 AGTTAAAAGAGTGCTGCTACACA 58.296 39.130 11.44 0.00 43.23 3.72
924 1802 5.334182 GGAAGTTAAAAGAGTGCTGCTACAC 60.334 44.000 0.00 1.90 41.02 2.90
925 1803 4.755123 GGAAGTTAAAAGAGTGCTGCTACA 59.245 41.667 0.00 0.00 0.00 2.74
926 1804 4.755123 TGGAAGTTAAAAGAGTGCTGCTAC 59.245 41.667 0.00 0.00 0.00 3.58
927 1805 4.755123 GTGGAAGTTAAAAGAGTGCTGCTA 59.245 41.667 0.00 0.00 0.00 3.49
928 1806 3.565902 GTGGAAGTTAAAAGAGTGCTGCT 59.434 43.478 0.00 0.00 0.00 4.24
929 1807 3.315191 TGTGGAAGTTAAAAGAGTGCTGC 59.685 43.478 0.00 0.00 0.00 5.25
930 1808 5.163663 TGTTGTGGAAGTTAAAAGAGTGCTG 60.164 40.000 0.00 0.00 0.00 4.41
931 1809 4.947388 TGTTGTGGAAGTTAAAAGAGTGCT 59.053 37.500 0.00 0.00 0.00 4.40
932 1810 5.243426 TGTTGTGGAAGTTAAAAGAGTGC 57.757 39.130 0.00 0.00 0.00 4.40
933 1811 6.033966 GGTTGTTGTGGAAGTTAAAAGAGTG 58.966 40.000 0.00 0.00 0.00 3.51
934 1812 5.126545 GGGTTGTTGTGGAAGTTAAAAGAGT 59.873 40.000 0.00 0.00 0.00 3.24
935 1813 5.126384 TGGGTTGTTGTGGAAGTTAAAAGAG 59.874 40.000 0.00 0.00 0.00 2.85
936 1814 5.017490 TGGGTTGTTGTGGAAGTTAAAAGA 58.983 37.500 0.00 0.00 0.00 2.52
937 1815 5.331876 TGGGTTGTTGTGGAAGTTAAAAG 57.668 39.130 0.00 0.00 0.00 2.27
938 1816 4.160626 CCTGGGTTGTTGTGGAAGTTAAAA 59.839 41.667 0.00 0.00 0.00 1.52
939 1817 3.702045 CCTGGGTTGTTGTGGAAGTTAAA 59.298 43.478 0.00 0.00 0.00 1.52
940 1818 3.292460 CCTGGGTTGTTGTGGAAGTTAA 58.708 45.455 0.00 0.00 0.00 2.01
941 1819 2.242708 ACCTGGGTTGTTGTGGAAGTTA 59.757 45.455 0.00 0.00 0.00 2.24
942 1820 1.006639 ACCTGGGTTGTTGTGGAAGTT 59.993 47.619 0.00 0.00 0.00 2.66
943 1821 0.629058 ACCTGGGTTGTTGTGGAAGT 59.371 50.000 0.00 0.00 0.00 3.01
944 1822 1.032014 CACCTGGGTTGTTGTGGAAG 58.968 55.000 0.00 0.00 0.00 3.46
945 1823 0.333312 ACACCTGGGTTGTTGTGGAA 59.667 50.000 0.00 0.00 33.07 3.53
946 1824 0.395036 CACACCTGGGTTGTTGTGGA 60.395 55.000 6.51 0.00 33.07 4.02
947 1825 0.682855 ACACACCTGGGTTGTTGTGG 60.683 55.000 15.99 2.35 33.07 4.17
948 1826 0.738389 GACACACCTGGGTTGTTGTG 59.262 55.000 11.54 11.54 34.92 3.33
949 1827 0.329931 TGACACACCTGGGTTGTTGT 59.670 50.000 0.00 4.40 0.00 3.32
950 1828 1.024271 CTGACACACCTGGGTTGTTG 58.976 55.000 0.00 0.00 0.00 3.33
951 1829 0.623723 ACTGACACACCTGGGTTGTT 59.376 50.000 0.00 0.00 0.00 2.83
952 1830 0.107214 CACTGACACACCTGGGTTGT 60.107 55.000 0.00 0.00 0.00 3.32
953 1831 1.447317 GCACTGACACACCTGGGTTG 61.447 60.000 0.00 0.00 0.00 3.77
954 1832 1.152963 GCACTGACACACCTGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
955 1833 2.510906 GCACTGACACACCTGGGT 59.489 61.111 0.00 0.00 0.00 4.51
956 1834 2.666190 CGCACTGACACACCTGGG 60.666 66.667 0.00 0.00 0.00 4.45
957 1835 2.108976 ACGCACTGACACACCTGG 59.891 61.111 0.00 0.00 0.00 4.45
958 1836 2.246739 CCACGCACTGACACACCTG 61.247 63.158 0.00 0.00 0.00 4.00
959 1837 2.108976 CCACGCACTGACACACCT 59.891 61.111 0.00 0.00 0.00 4.00
960 1838 3.649986 GCCACGCACTGACACACC 61.650 66.667 0.00 0.00 0.00 4.16
961 1839 4.000557 CGCCACGCACTGACACAC 62.001 66.667 0.00 0.00 0.00 3.82
962 1840 4.214327 TCGCCACGCACTGACACA 62.214 61.111 0.00 0.00 0.00 3.72
963 1841 3.702555 GTCGCCACGCACTGACAC 61.703 66.667 0.00 0.00 0.00 3.67
964 1842 4.961511 GGTCGCCACGCACTGACA 62.962 66.667 1.72 0.00 33.04 3.58
989 1867 0.460284 CGACGCCATAGCTGGAAAGT 60.460 55.000 0.00 0.00 46.37 2.66
1381 2291 5.163953 GGAAATCACTACAGATGTTCACACG 60.164 44.000 0.00 0.00 0.00 4.49
1411 2323 6.014840 TGGAGATAAATATAGGACCCGTTGAC 60.015 42.308 0.00 0.00 0.00 3.18
1524 2439 3.054361 TCCCCTTCTCTGAGCCAAATTAC 60.054 47.826 0.00 0.00 0.00 1.89
1558 2474 7.620806 GCACAAGGTTAAGACGTTCAGTAATAC 60.621 40.741 0.00 0.00 31.92 1.89
1879 2797 6.396459 ACAAACACAATACCAAAACAAACG 57.604 33.333 0.00 0.00 0.00 3.60
1900 2818 8.744652 CCAACACATCAAATATACCCTTTTACA 58.255 33.333 0.00 0.00 0.00 2.41
1954 2872 7.948278 ATTGCGTTCACTCTAATTCTATACC 57.052 36.000 0.00 0.00 0.00 2.73
1959 2877 4.974591 GCAATTGCGTTCACTCTAATTCT 58.025 39.130 15.87 0.00 0.00 2.40
2045 2963 2.571212 AGTGGCACAATCTTCGAAACA 58.429 42.857 21.41 0.00 44.16 2.83
2277 3195 6.722301 ACTCCTAAAAACGCTAACAGAAAAC 58.278 36.000 0.00 0.00 0.00 2.43
2304 3222 5.862924 ATGATTGTGTTTCTGGAGTAACG 57.137 39.130 0.00 0.00 0.00 3.18
2325 3250 7.230510 TCAGAAGCTTACCATGTTGTACAAAAT 59.769 33.333 10.51 7.79 0.00 1.82
2450 3375 4.003648 CAGGACAGTTTTATTTCTCGGCT 58.996 43.478 0.00 0.00 0.00 5.52
2455 3380 8.706322 ATGTTTACCAGGACAGTTTTATTTCT 57.294 30.769 0.00 0.00 0.00 2.52
2599 3524 9.681692 TGATTAGTGTTTTGATCAGAATGTTTG 57.318 29.630 1.53 0.00 37.40 2.93
2731 3688 6.283694 TCCATTAGAGTAGCATGCAGTTAAG 58.716 40.000 21.98 0.86 0.00 1.85
2776 3733 4.854399 TGTCGGTCAAATTGCTAAAACTG 58.146 39.130 0.00 0.00 0.00 3.16
2842 3799 4.359971 TGATGAACTGCGAAATCATTGG 57.640 40.909 0.00 0.00 34.10 3.16
2925 3882 2.403698 CGCGCCAAAGTTTTGTATGTTC 59.596 45.455 0.00 0.00 36.45 3.18
2943 3900 2.392933 TGGTCAAACTTTAAAGCGCG 57.607 45.000 15.24 0.00 0.00 6.86
3017 3974 4.341487 CATATGCATGGGATCCTGATGTT 58.659 43.478 12.58 8.81 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.