Multiple sequence alignment - TraesCS7A01G246200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G246200 chr7A 100.000 6721 0 0 1 6721 225054337 225061057 0.000000e+00 12412.0
1 TraesCS7A01G246200 chr7A 86.216 399 54 1 4963 5361 29034363 29034760 1.340000e-116 431.0
2 TraesCS7A01G246200 chr7A 87.768 327 40 0 5396 5722 29034762 29035088 3.800000e-102 383.0
3 TraesCS7A01G246200 chr7D 94.582 2898 103 28 3337 6232 213512547 213515392 0.000000e+00 4433.0
4 TraesCS7A01G246200 chr7D 89.280 1903 85 43 414 2222 213509361 213511238 0.000000e+00 2274.0
5 TraesCS7A01G246200 chr7D 93.262 935 31 7 2296 3209 213511263 213512186 0.000000e+00 1349.0
6 TraesCS7A01G246200 chr7D 82.368 777 100 14 4959 5733 28684035 28684776 5.680000e-180 641.0
7 TraesCS7A01G246200 chr7D 91.429 280 18 3 6440 6719 213515874 213516147 4.920000e-101 379.0
8 TraesCS7A01G246200 chr7D 84.314 102 14 2 281 381 549391307 549391407 1.540000e-16 99.0
9 TraesCS7A01G246200 chr7D 97.368 38 1 0 6290 6327 213515392 213515429 1.560000e-06 65.8
10 TraesCS7A01G246200 chr7B 93.779 2845 113 21 3343 6185 188396476 188393694 0.000000e+00 4215.0
11 TraesCS7A01G246200 chr7B 85.143 1501 123 49 718 2178 188399543 188398103 0.000000e+00 1445.0
12 TraesCS7A01G246200 chr7B 89.517 601 28 7 2301 2875 188398035 188397444 0.000000e+00 728.0
13 TraesCS7A01G246200 chr7B 88.934 488 37 8 6237 6719 188393384 188392909 2.700000e-163 586.0
14 TraesCS7A01G246200 chr7B 89.402 368 26 7 2871 3237 188396880 188396525 1.030000e-122 451.0
15 TraesCS7A01G246200 chr7B 84.397 282 13 7 414 693 188408570 188408318 1.450000e-61 248.0
16 TraesCS7A01G246200 chr5A 86.369 2465 252 47 3345 5784 683131373 683133778 0.000000e+00 2614.0
17 TraesCS7A01G246200 chr5A 89.844 384 13 11 1 381 30098847 30098487 2.840000e-128 470.0
18 TraesCS7A01G246200 chr5A 85.959 292 24 7 2452 2730 683131040 683131327 5.100000e-76 296.0
19 TraesCS7A01G246200 chr5A 94.350 177 10 0 1261 1437 683129313 683129489 8.590000e-69 272.0
20 TraesCS7A01G246200 chr5A 88.525 61 7 0 3544 3604 575708268 575708208 2.600000e-09 75.0
21 TraesCS7A01G246200 chr4D 91.929 1623 119 7 4169 5785 501169174 501167558 0.000000e+00 2261.0
22 TraesCS7A01G246200 chr4D 87.535 714 55 22 3369 4077 501169990 501169306 0.000000e+00 795.0
23 TraesCS7A01G246200 chr4D 79.540 391 51 16 6357 6719 128909820 128909431 1.120000e-62 252.0
24 TraesCS7A01G246200 chr4D 95.495 111 5 0 1328 1438 501179001 501178891 1.930000e-40 178.0
25 TraesCS7A01G246200 chr4D 94.521 73 4 0 1261 1333 501179691 501179619 5.510000e-21 113.0
26 TraesCS7A01G246200 chr4D 73.750 320 66 15 5008 5318 15872269 15871959 7.130000e-20 110.0
27 TraesCS7A01G246200 chr4A 84.507 781 117 4 4963 5741 702384092 702384870 0.000000e+00 769.0
28 TraesCS7A01G246200 chr4A 84.190 525 65 4 5234 5741 702404218 702404741 1.680000e-135 494.0
29 TraesCS7A01G246200 chr4A 86.179 123 16 1 4963 5085 702402554 702402675 1.520000e-26 132.0
30 TraesCS7A01G246200 chr3A 90.838 382 11 10 1 381 740108278 740108636 2.180000e-134 490.0
31 TraesCS7A01G246200 chr2B 88.714 381 17 10 1 381 69175375 69175729 6.190000e-120 442.0
32 TraesCS7A01G246200 chr2B 91.111 180 14 2 196 375 5721444 5721621 6.730000e-60 243.0
33 TraesCS7A01G246200 chr2A 86.179 369 36 8 1 369 63605111 63604758 1.060000e-102 385.0
34 TraesCS7A01G246200 chr2A 85.388 219 28 2 6348 6563 21146914 21147131 2.440000e-54 224.0
35 TraesCS7A01G246200 chr2A 86.473 207 24 4 6348 6553 37214127 37214330 2.440000e-54 224.0
36 TraesCS7A01G246200 chr2A 84.259 108 14 2 36 140 25349728 25349621 1.190000e-17 102.0
37 TraesCS7A01G246200 chr1A 86.819 349 39 6 32 380 400961818 400962159 3.800000e-102 383.0
38 TraesCS7A01G246200 chr1A 84.188 234 27 7 6337 6563 496076882 496077112 1.130000e-52 219.0
39 TraesCS7A01G246200 chr5D 86.119 353 41 5 32 380 329774532 329774880 2.290000e-99 374.0
40 TraesCS7A01G246200 chr5D 90.811 185 12 4 196 380 121073323 121073144 6.730000e-60 243.0
41 TraesCS7A01G246200 chr5D 88.525 61 7 0 3544 3604 458097062 458097002 2.600000e-09 75.0
42 TraesCS7A01G246200 chr2D 87.560 209 22 4 6348 6555 34271234 34271439 8.710000e-59 239.0
43 TraesCS7A01G246200 chr2D 87.562 201 24 1 6354 6554 383561823 383561624 1.460000e-56 231.0
44 TraesCS7A01G246200 chr2D 85.106 141 21 0 6567 6707 383561582 383561442 1.950000e-30 145.0
45 TraesCS7A01G246200 chr6D 89.730 185 17 2 196 380 283810165 283809983 1.130000e-57 235.0
46 TraesCS7A01G246200 chr6B 84.444 225 29 5 6342 6563 638936384 638936605 4.080000e-52 217.0
47 TraesCS7A01G246200 chr6B 96.774 31 1 0 3484 3514 8790396 8790366 1.200000e-02 52.8
48 TraesCS7A01G246200 chr5B 88.525 61 7 0 3544 3604 560443709 560443649 2.600000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G246200 chr7A 225054337 225061057 6720 False 12412.000000 12412 100.000000 1 6721 1 chr7A.!!$F1 6720
1 TraesCS7A01G246200 chr7A 29034363 29035088 725 False 407.000000 431 86.992000 4963 5722 2 chr7A.!!$F2 759
2 TraesCS7A01G246200 chr7D 213509361 213516147 6786 False 1700.160000 4433 93.184200 414 6719 5 chr7D.!!$F3 6305
3 TraesCS7A01G246200 chr7D 28684035 28684776 741 False 641.000000 641 82.368000 4959 5733 1 chr7D.!!$F1 774
4 TraesCS7A01G246200 chr7B 188392909 188399543 6634 True 1485.000000 4215 89.355000 718 6719 5 chr7B.!!$R2 6001
5 TraesCS7A01G246200 chr5A 683129313 683133778 4465 False 1060.666667 2614 88.892667 1261 5784 3 chr5A.!!$F1 4523
6 TraesCS7A01G246200 chr4D 501167558 501169990 2432 True 1528.000000 2261 89.732000 3369 5785 2 chr4D.!!$R3 2416
7 TraesCS7A01G246200 chr4A 702384092 702384870 778 False 769.000000 769 84.507000 4963 5741 1 chr4A.!!$F1 778
8 TraesCS7A01G246200 chr4A 702402554 702404741 2187 False 313.000000 494 85.184500 4963 5741 2 chr4A.!!$F2 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.028902 GCCAAACACACAACTCGTCC 59.971 55.000 0.00 0.0 0.00 4.79 F
396 397 0.043053 CGACGCCGCAAATGTGATAG 60.043 55.000 0.00 0.0 0.00 2.08 F
527 528 0.442699 GTAGCCTGGAAACGAAAGCG 59.557 55.000 0.00 0.0 44.79 4.68 F
2212 2518 0.610232 GCAAAGACCCTCATGCCACT 60.610 55.000 0.00 0.0 32.73 4.00 F
3263 4688 0.242825 GCTGCAGCTTGCTTGAATGA 59.757 50.000 31.33 0.0 45.31 2.57 F
3722 5439 1.068125 TGTAACTCGTGCTATGTGCGT 60.068 47.619 0.00 0.0 46.63 5.24 F
5085 8283 0.600782 GGTTCAGGCGTACGTTTCCA 60.601 55.000 17.90 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 2204 0.245266 TGTATCGCCGCTCAAGTTGA 59.755 50.0 5.25 5.25 0.00 3.18 R
2186 2492 0.036388 TGAGGGTCTTTGCACCGATC 60.036 55.0 0.00 0.00 37.30 3.69 R
2263 3085 2.358322 AACAAGGTGAAATGGGTCGT 57.642 45.0 0.00 0.00 0.00 4.34 R
3695 5408 0.033504 AGCACGAGTTACACCCTGTG 59.966 55.0 0.00 0.00 39.75 3.66 R
5085 8283 0.108945 GCGTTGTTCGGGTAGTAGCT 60.109 55.0 0.00 0.00 40.26 3.32 R
5462 8702 1.048724 CGGGGGAATGGCTAGACAGA 61.049 60.0 3.72 0.00 0.00 3.41 R
6690 10548 0.895530 CTTTGGGAGCCGAGAGTACA 59.104 55.0 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.348998 AGTGCGGCTTCCCAGAAG 59.651 61.111 0.00 0.00 0.00 2.85
18 19 2.747855 GTGCGGCTTCCCAGAAGG 60.748 66.667 0.00 0.00 0.00 3.46
28 29 4.821589 CCAGAAGGGCGGCGACTC 62.822 72.222 14.66 2.46 0.00 3.36
29 30 4.069232 CAGAAGGGCGGCGACTCA 62.069 66.667 14.66 0.00 0.00 3.41
30 31 3.077556 AGAAGGGCGGCGACTCAT 61.078 61.111 14.66 0.00 0.00 2.90
31 32 2.586357 GAAGGGCGGCGACTCATC 60.586 66.667 14.66 4.81 0.00 2.92
54 55 2.691522 CGCAGCAAGTCATCGACG 59.308 61.111 0.00 0.00 37.67 5.12
55 56 1.801512 CGCAGCAAGTCATCGACGA 60.802 57.895 0.00 0.00 37.67 4.20
56 57 1.737196 CGCAGCAAGTCATCGACGAG 61.737 60.000 3.01 0.00 37.67 4.18
57 58 1.994467 CAGCAAGTCATCGACGAGC 59.006 57.895 3.01 0.00 37.67 5.03
58 59 0.733909 CAGCAAGTCATCGACGAGCA 60.734 55.000 3.01 0.00 38.77 4.26
59 60 0.734253 AGCAAGTCATCGACGAGCAC 60.734 55.000 3.01 2.16 38.77 4.40
60 61 1.687494 GCAAGTCATCGACGAGCACC 61.687 60.000 3.01 0.00 37.67 5.01
61 62 1.154016 AAGTCATCGACGAGCACCG 60.154 57.895 3.01 0.00 45.44 4.94
62 63 3.248171 GTCATCGACGAGCACCGC 61.248 66.667 3.01 0.00 43.32 5.68
63 64 4.829518 TCATCGACGAGCACCGCG 62.830 66.667 3.01 0.00 43.32 6.46
77 78 4.514577 CGCGCCTCCTTCGACCAT 62.515 66.667 0.00 0.00 0.00 3.55
78 79 2.892425 GCGCCTCCTTCGACCATG 60.892 66.667 0.00 0.00 0.00 3.66
79 80 2.892640 CGCCTCCTTCGACCATGA 59.107 61.111 0.00 0.00 0.00 3.07
80 81 1.519455 CGCCTCCTTCGACCATGAC 60.519 63.158 0.00 0.00 0.00 3.06
81 82 1.519455 GCCTCCTTCGACCATGACG 60.519 63.158 0.00 0.00 0.00 4.35
82 83 1.945354 GCCTCCTTCGACCATGACGA 61.945 60.000 10.03 10.03 37.99 4.20
83 84 0.747255 CCTCCTTCGACCATGACGAT 59.253 55.000 13.67 0.00 39.45 3.73
84 85 1.536922 CCTCCTTCGACCATGACGATG 60.537 57.143 13.67 14.69 39.45 3.84
92 93 1.070445 CCATGACGATGGGAGGAGC 59.930 63.158 0.00 0.00 45.11 4.70
93 94 1.300465 CATGACGATGGGAGGAGCG 60.300 63.158 0.00 0.00 0.00 5.03
94 95 2.502492 ATGACGATGGGAGGAGCGG 61.502 63.158 0.00 0.00 0.00 5.52
95 96 4.593864 GACGATGGGAGGAGCGGC 62.594 72.222 0.00 0.00 0.00 6.53
98 99 4.593864 GATGGGAGGAGCGGCGAC 62.594 72.222 12.98 3.05 0.00 5.19
103 104 4.500116 GAGGAGCGGCGACAGGAC 62.500 72.222 12.98 0.00 0.00 3.85
110 111 2.202756 GGCGACAGGACGATGGTC 60.203 66.667 0.00 0.00 42.66 4.02
118 119 2.722487 GACGATGGTCGGCGATCT 59.278 61.111 22.09 6.77 45.59 2.75
119 120 1.947013 GACGATGGTCGGCGATCTA 59.053 57.895 22.09 9.68 45.59 1.98
120 121 0.522180 GACGATGGTCGGCGATCTAT 59.478 55.000 22.09 13.97 45.59 1.98
121 122 0.959553 ACGATGGTCGGCGATCTATT 59.040 50.000 22.09 6.12 45.59 1.73
122 123 1.335964 ACGATGGTCGGCGATCTATTG 60.336 52.381 22.09 18.22 45.59 1.90
123 124 1.714794 GATGGTCGGCGATCTATTGG 58.285 55.000 22.09 0.00 0.00 3.16
124 125 1.272490 GATGGTCGGCGATCTATTGGA 59.728 52.381 22.09 0.00 0.00 3.53
125 126 0.387929 TGGTCGGCGATCTATTGGAC 59.612 55.000 22.09 1.02 0.00 4.02
126 127 0.387929 GGTCGGCGATCTATTGGACA 59.612 55.000 14.79 0.00 0.00 4.02
127 128 1.000955 GGTCGGCGATCTATTGGACAT 59.999 52.381 14.79 0.00 0.00 3.06
128 129 2.061773 GTCGGCGATCTATTGGACATG 58.938 52.381 14.79 0.00 0.00 3.21
129 130 0.792640 CGGCGATCTATTGGACATGC 59.207 55.000 0.00 0.00 0.00 4.06
130 131 1.873486 CGGCGATCTATTGGACATGCA 60.873 52.381 0.00 0.00 0.00 3.96
131 132 1.802960 GGCGATCTATTGGACATGCAG 59.197 52.381 0.00 0.00 0.00 4.41
132 133 1.802960 GCGATCTATTGGACATGCAGG 59.197 52.381 0.00 0.00 0.00 4.85
133 134 1.802960 CGATCTATTGGACATGCAGGC 59.197 52.381 0.00 0.00 0.00 4.85
134 135 1.802960 GATCTATTGGACATGCAGGCG 59.197 52.381 0.00 0.00 0.00 5.52
135 136 0.179048 TCTATTGGACATGCAGGCGG 60.179 55.000 0.00 0.00 0.00 6.13
136 137 1.789078 CTATTGGACATGCAGGCGGC 61.789 60.000 0.00 0.00 45.13 6.53
151 152 3.695606 GGCAGAGGTCAGCCGTGA 61.696 66.667 0.00 0.00 38.75 4.35
174 175 3.893763 CCGCCGCCAAACACACAA 61.894 61.111 0.00 0.00 0.00 3.33
175 176 2.653766 CGCCGCCAAACACACAAC 60.654 61.111 0.00 0.00 0.00 3.32
176 177 2.804856 GCCGCCAAACACACAACT 59.195 55.556 0.00 0.00 0.00 3.16
177 178 1.299089 GCCGCCAAACACACAACTC 60.299 57.895 0.00 0.00 0.00 3.01
178 179 1.010125 CCGCCAAACACACAACTCG 60.010 57.895 0.00 0.00 0.00 4.18
179 180 1.711060 CCGCCAAACACACAACTCGT 61.711 55.000 0.00 0.00 0.00 4.18
180 181 0.315869 CGCCAAACACACAACTCGTC 60.316 55.000 0.00 0.00 0.00 4.20
181 182 0.028902 GCCAAACACACAACTCGTCC 59.971 55.000 0.00 0.00 0.00 4.79
182 183 1.374560 CCAAACACACAACTCGTCCA 58.625 50.000 0.00 0.00 0.00 4.02
183 184 1.063469 CCAAACACACAACTCGTCCAC 59.937 52.381 0.00 0.00 0.00 4.02
184 185 1.735018 CAAACACACAACTCGTCCACA 59.265 47.619 0.00 0.00 0.00 4.17
185 186 1.365699 AACACACAACTCGTCCACAC 58.634 50.000 0.00 0.00 0.00 3.82
187 188 1.881252 ACACAACTCGTCCACACGC 60.881 57.895 0.00 0.00 46.28 5.34
188 189 2.657296 ACAACTCGTCCACACGCG 60.657 61.111 3.53 3.53 46.28 6.01
189 190 3.403057 CAACTCGTCCACACGCGG 61.403 66.667 12.47 1.27 46.28 6.46
190 191 4.657824 AACTCGTCCACACGCGGG 62.658 66.667 6.92 6.92 46.28 6.13
206 207 4.825679 GGGGGAGGGGAGGGTCTG 62.826 77.778 0.00 0.00 0.00 3.51
207 208 3.695825 GGGGAGGGGAGGGTCTGA 61.696 72.222 0.00 0.00 0.00 3.27
208 209 2.706071 GGGAGGGGAGGGTCTGAT 59.294 66.667 0.00 0.00 0.00 2.90
209 210 1.004891 GGGAGGGGAGGGTCTGATT 59.995 63.158 0.00 0.00 0.00 2.57
210 211 1.348775 GGGAGGGGAGGGTCTGATTG 61.349 65.000 0.00 0.00 0.00 2.67
211 212 1.529309 GAGGGGAGGGTCTGATTGC 59.471 63.158 0.00 0.00 0.00 3.56
212 213 0.985490 GAGGGGAGGGTCTGATTGCT 60.985 60.000 0.00 0.00 0.00 3.91
213 214 0.551131 AGGGGAGGGTCTGATTGCTT 60.551 55.000 0.00 0.00 0.00 3.91
214 215 0.332972 GGGGAGGGTCTGATTGCTTT 59.667 55.000 0.00 0.00 0.00 3.51
215 216 1.272704 GGGGAGGGTCTGATTGCTTTT 60.273 52.381 0.00 0.00 0.00 2.27
216 217 2.095461 GGGAGGGTCTGATTGCTTTTC 58.905 52.381 0.00 0.00 0.00 2.29
217 218 2.291217 GGGAGGGTCTGATTGCTTTTCT 60.291 50.000 0.00 0.00 0.00 2.52
218 219 3.425659 GGAGGGTCTGATTGCTTTTCTT 58.574 45.455 0.00 0.00 0.00 2.52
219 220 3.829026 GGAGGGTCTGATTGCTTTTCTTT 59.171 43.478 0.00 0.00 0.00 2.52
220 221 4.281941 GGAGGGTCTGATTGCTTTTCTTTT 59.718 41.667 0.00 0.00 0.00 2.27
221 222 5.221521 GGAGGGTCTGATTGCTTTTCTTTTT 60.222 40.000 0.00 0.00 0.00 1.94
243 244 5.836024 TTTAGATCTAGGGGTGTTTGTGT 57.164 39.130 2.02 0.00 0.00 3.72
244 245 5.836024 TTAGATCTAGGGGTGTTTGTGTT 57.164 39.130 2.02 0.00 0.00 3.32
245 246 6.938698 TTAGATCTAGGGGTGTTTGTGTTA 57.061 37.500 2.02 0.00 0.00 2.41
246 247 7.504926 TTAGATCTAGGGGTGTTTGTGTTAT 57.495 36.000 2.02 0.00 0.00 1.89
247 248 6.388619 AGATCTAGGGGTGTTTGTGTTATT 57.611 37.500 0.00 0.00 0.00 1.40
248 249 6.790319 AGATCTAGGGGTGTTTGTGTTATTT 58.210 36.000 0.00 0.00 0.00 1.40
249 250 7.238710 AGATCTAGGGGTGTTTGTGTTATTTT 58.761 34.615 0.00 0.00 0.00 1.82
250 251 7.728532 AGATCTAGGGGTGTTTGTGTTATTTTT 59.271 33.333 0.00 0.00 0.00 1.94
274 275 8.685838 TTTTTGCTAAGTCAGTACCTTACAAT 57.314 30.769 0.00 0.00 0.00 2.71
275 276 7.900782 TTTGCTAAGTCAGTACCTTACAATC 57.099 36.000 0.00 0.00 0.00 2.67
276 277 6.852420 TGCTAAGTCAGTACCTTACAATCT 57.148 37.500 0.00 0.00 0.00 2.40
277 278 6.631016 TGCTAAGTCAGTACCTTACAATCTG 58.369 40.000 0.00 0.00 0.00 2.90
278 279 5.520649 GCTAAGTCAGTACCTTACAATCTGC 59.479 44.000 0.00 0.00 0.00 4.26
279 280 4.473477 AGTCAGTACCTTACAATCTGCC 57.527 45.455 0.00 0.00 0.00 4.85
280 281 3.197983 AGTCAGTACCTTACAATCTGCCC 59.802 47.826 0.00 0.00 0.00 5.36
281 282 2.504175 TCAGTACCTTACAATCTGCCCC 59.496 50.000 0.00 0.00 0.00 5.80
282 283 1.844497 AGTACCTTACAATCTGCCCCC 59.156 52.381 0.00 0.00 0.00 5.40
283 284 1.562475 GTACCTTACAATCTGCCCCCA 59.438 52.381 0.00 0.00 0.00 4.96
284 285 0.331616 ACCTTACAATCTGCCCCCAC 59.668 55.000 0.00 0.00 0.00 4.61
285 286 0.625849 CCTTACAATCTGCCCCCACT 59.374 55.000 0.00 0.00 0.00 4.00
286 287 1.005924 CCTTACAATCTGCCCCCACTT 59.994 52.381 0.00 0.00 0.00 3.16
287 288 2.094675 CTTACAATCTGCCCCCACTTG 58.905 52.381 0.00 0.00 0.00 3.16
288 289 1.072266 TACAATCTGCCCCCACTTGT 58.928 50.000 0.00 0.00 34.63 3.16
289 290 1.072266 ACAATCTGCCCCCACTTGTA 58.928 50.000 0.00 0.00 0.00 2.41
290 291 1.427368 ACAATCTGCCCCCACTTGTAA 59.573 47.619 0.00 0.00 0.00 2.41
291 292 2.094675 CAATCTGCCCCCACTTGTAAG 58.905 52.381 0.00 0.00 0.00 2.34
292 293 1.668826 ATCTGCCCCCACTTGTAAGA 58.331 50.000 0.00 0.00 0.00 2.10
293 294 1.440618 TCTGCCCCCACTTGTAAGAA 58.559 50.000 0.00 0.00 0.00 2.52
294 295 1.777878 TCTGCCCCCACTTGTAAGAAA 59.222 47.619 0.00 0.00 0.00 2.52
295 296 2.162681 CTGCCCCCACTTGTAAGAAAG 58.837 52.381 0.00 0.00 0.00 2.62
296 297 1.497286 TGCCCCCACTTGTAAGAAAGT 59.503 47.619 0.00 0.00 41.08 2.66
309 310 8.135529 ACTTGTAAGAAAGTGATTAAACAAGCC 58.864 33.333 10.79 0.00 43.90 4.35
310 311 7.575414 TGTAAGAAAGTGATTAAACAAGCCA 57.425 32.000 0.00 0.00 0.00 4.75
311 312 8.001881 TGTAAGAAAGTGATTAAACAAGCCAA 57.998 30.769 0.00 0.00 0.00 4.52
312 313 8.470805 TGTAAGAAAGTGATTAAACAAGCCAAA 58.529 29.630 0.00 0.00 0.00 3.28
313 314 9.476202 GTAAGAAAGTGATTAAACAAGCCAAAT 57.524 29.630 0.00 0.00 0.00 2.32
314 315 8.593492 AAGAAAGTGATTAAACAAGCCAAATC 57.407 30.769 0.00 0.00 0.00 2.17
315 316 7.725251 AGAAAGTGATTAAACAAGCCAAATCA 58.275 30.769 0.00 0.00 36.32 2.57
318 319 4.929211 GTGATTAAACAAGCCAAATCACCC 59.071 41.667 13.47 0.00 46.41 4.61
319 320 3.651803 TTAAACAAGCCAAATCACCCG 57.348 42.857 0.00 0.00 0.00 5.28
320 321 1.698506 AAACAAGCCAAATCACCCGA 58.301 45.000 0.00 0.00 0.00 5.14
321 322 1.923356 AACAAGCCAAATCACCCGAT 58.077 45.000 0.00 0.00 0.00 4.18
322 323 1.463674 ACAAGCCAAATCACCCGATC 58.536 50.000 0.00 0.00 0.00 3.69
323 324 1.271871 ACAAGCCAAATCACCCGATCA 60.272 47.619 0.00 0.00 0.00 2.92
324 325 1.402968 CAAGCCAAATCACCCGATCAG 59.597 52.381 0.00 0.00 0.00 2.90
325 326 0.620556 AGCCAAATCACCCGATCAGT 59.379 50.000 0.00 0.00 0.00 3.41
326 327 0.734889 GCCAAATCACCCGATCAGTG 59.265 55.000 6.55 6.55 36.54 3.66
327 328 1.950484 GCCAAATCACCCGATCAGTGT 60.950 52.381 11.50 0.00 36.58 3.55
328 329 2.436417 CCAAATCACCCGATCAGTGTT 58.564 47.619 11.50 2.56 36.58 3.32
329 330 2.819608 CCAAATCACCCGATCAGTGTTT 59.180 45.455 11.50 7.72 36.58 2.83
330 331 3.255642 CCAAATCACCCGATCAGTGTTTT 59.744 43.478 11.50 12.17 37.53 2.43
331 332 4.261994 CCAAATCACCCGATCAGTGTTTTT 60.262 41.667 14.65 11.70 35.83 1.94
354 355 5.820926 TGCAACGACTTAAATGATTTTGC 57.179 34.783 0.00 0.00 38.83 3.68
355 356 4.381270 TGCAACGACTTAAATGATTTTGCG 59.619 37.500 0.00 0.00 40.76 4.85
356 357 4.201485 GCAACGACTTAAATGATTTTGCGG 60.201 41.667 0.00 0.00 0.00 5.69
357 358 4.759516 ACGACTTAAATGATTTTGCGGT 57.240 36.364 0.00 0.00 0.00 5.68
358 359 4.472286 ACGACTTAAATGATTTTGCGGTG 58.528 39.130 0.00 0.00 0.00 4.94
359 360 4.023536 ACGACTTAAATGATTTTGCGGTGT 60.024 37.500 0.00 0.00 0.00 4.16
360 361 4.915085 CGACTTAAATGATTTTGCGGTGTT 59.085 37.500 0.00 0.00 0.00 3.32
361 362 5.401079 CGACTTAAATGATTTTGCGGTGTTT 59.599 36.000 0.00 0.00 0.00 2.83
362 363 6.074569 CGACTTAAATGATTTTGCGGTGTTTT 60.075 34.615 0.00 0.00 0.00 2.43
363 364 7.515998 CGACTTAAATGATTTTGCGGTGTTTTT 60.516 33.333 0.00 0.00 0.00 1.94
380 381 2.604969 TTTTGCAACGGATTAGCGAC 57.395 45.000 0.00 0.00 0.00 5.19
381 382 0.440758 TTTGCAACGGATTAGCGACG 59.559 50.000 0.00 0.00 0.00 5.12
382 383 1.962092 TTGCAACGGATTAGCGACGC 61.962 55.000 13.03 13.03 0.00 5.19
383 384 3.003478 CAACGGATTAGCGACGCC 58.997 61.111 17.79 0.00 0.00 5.68
394 395 2.784596 CGACGCCGCAAATGTGAT 59.215 55.556 0.00 0.00 0.00 3.06
395 396 2.002899 CGACGCCGCAAATGTGATA 58.997 52.632 0.00 0.00 0.00 2.15
396 397 0.043053 CGACGCCGCAAATGTGATAG 60.043 55.000 0.00 0.00 0.00 2.08
397 398 1.006832 GACGCCGCAAATGTGATAGT 58.993 50.000 0.00 0.00 0.00 2.12
398 399 1.396996 GACGCCGCAAATGTGATAGTT 59.603 47.619 0.00 0.00 0.00 2.24
399 400 1.810151 ACGCCGCAAATGTGATAGTTT 59.190 42.857 0.00 0.00 0.00 2.66
400 401 2.159572 ACGCCGCAAATGTGATAGTTTC 60.160 45.455 0.00 0.00 0.00 2.78
401 402 2.095853 CGCCGCAAATGTGATAGTTTCT 59.904 45.455 0.00 0.00 0.00 2.52
402 403 3.426159 CGCCGCAAATGTGATAGTTTCTT 60.426 43.478 0.00 0.00 0.00 2.52
403 404 3.853671 GCCGCAAATGTGATAGTTTCTTG 59.146 43.478 0.00 0.00 0.00 3.02
404 405 3.853671 CCGCAAATGTGATAGTTTCTTGC 59.146 43.478 0.00 0.00 35.49 4.01
405 406 4.475028 CGCAAATGTGATAGTTTCTTGCA 58.525 39.130 0.00 0.00 38.02 4.08
406 407 4.916831 CGCAAATGTGATAGTTTCTTGCAA 59.083 37.500 0.00 0.00 38.02 4.08
407 408 5.574055 CGCAAATGTGATAGTTTCTTGCAAT 59.426 36.000 0.00 0.00 38.02 3.56
408 409 6.089820 CGCAAATGTGATAGTTTCTTGCAATT 59.910 34.615 0.00 0.00 38.02 2.32
409 410 7.231607 GCAAATGTGATAGTTTCTTGCAATTG 58.768 34.615 0.00 0.00 38.03 2.32
410 411 7.116662 GCAAATGTGATAGTTTCTTGCAATTGA 59.883 33.333 10.34 0.00 38.03 2.57
411 412 8.430063 CAAATGTGATAGTTTCTTGCAATTGAC 58.570 33.333 10.34 1.02 0.00 3.18
412 413 6.882610 TGTGATAGTTTCTTGCAATTGACT 57.117 33.333 10.34 6.77 0.00 3.41
419 420 5.357878 AGTTTCTTGCAATTGACTCTGTTGA 59.642 36.000 10.34 0.00 0.00 3.18
451 452 6.644347 CATAGCTCCAGTAAAGGAAGAAGAA 58.356 40.000 0.00 0.00 37.20 2.52
472 473 3.214328 ACACAATCTCAAACCACTGTCC 58.786 45.455 0.00 0.00 0.00 4.02
476 477 2.910688 TCTCAAACCACTGTCCAGAC 57.089 50.000 0.40 0.00 0.00 3.51
491 492 1.867233 CCAGACAAGAACTGAACCACG 59.133 52.381 0.00 0.00 37.54 4.94
492 493 2.483013 CCAGACAAGAACTGAACCACGA 60.483 50.000 0.00 0.00 37.54 4.35
493 494 3.194861 CAGACAAGAACTGAACCACGAA 58.805 45.455 0.00 0.00 37.54 3.85
494 495 3.001330 CAGACAAGAACTGAACCACGAAC 59.999 47.826 0.00 0.00 37.54 3.95
527 528 0.442699 GTAGCCTGGAAACGAAAGCG 59.557 55.000 0.00 0.00 44.79 4.68
588 590 3.245441 AGAAAACTACCTTTCCCGAGGA 58.755 45.455 0.00 0.00 39.25 3.71
602 604 2.405559 CCGAGGATAAACCCCTAACCT 58.594 52.381 0.00 0.00 40.05 3.50
616 618 0.753867 TAACCTGGCGACTTGTCACA 59.246 50.000 0.00 0.00 0.00 3.58
619 621 0.813610 CCTGGCGACTTGTCACACAA 60.814 55.000 0.00 0.00 36.54 3.33
670 672 2.362077 GTGTGGCACATTCCAAAGAAGT 59.638 45.455 24.95 0.00 44.52 3.01
679 681 4.694037 ACATTCCAAAGAAGTTACGTAGCC 59.306 41.667 5.74 0.00 34.86 3.93
695 697 4.593864 CCGCCTCGAAGCTAGCCC 62.594 72.222 12.13 2.58 0.00 5.19
707 709 0.833949 GCTAGCCCAGCCTAGAACTT 59.166 55.000 2.29 0.00 45.23 2.66
708 710 1.474143 GCTAGCCCAGCCTAGAACTTG 60.474 57.143 2.29 0.00 45.23 3.16
711 713 1.918957 AGCCCAGCCTAGAACTTGATT 59.081 47.619 0.00 0.00 0.00 2.57
736 738 4.534168 CGATAGTAACATGTACCCACGAG 58.466 47.826 0.00 0.00 0.00 4.18
778 780 3.830744 TTTCGACCAGAAACTCAAGGA 57.169 42.857 0.00 0.00 43.35 3.36
819 842 2.875317 TGCATTAGTTTCAACGCTCACA 59.125 40.909 0.00 0.00 0.00 3.58
1005 1050 1.882623 GCTATAAAGCCAGCCATGTCC 59.117 52.381 0.00 0.00 43.40 4.02
1008 1053 0.704076 TAAAGCCAGCCATGTCCCTT 59.296 50.000 0.00 0.00 0.00 3.95
1009 1054 0.613012 AAAGCCAGCCATGTCCCTTC 60.613 55.000 0.00 0.00 0.00 3.46
1010 1055 2.440980 GCCAGCCATGTCCCTTCC 60.441 66.667 0.00 0.00 0.00 3.46
1084 1129 2.040464 GCATCCTCCCCTCCTCCA 60.040 66.667 0.00 0.00 0.00 3.86
1086 1131 2.136878 CATCCTCCCCTCCTCCACG 61.137 68.421 0.00 0.00 0.00 4.94
1088 1133 2.880629 ATCCTCCCCTCCTCCACGTG 62.881 65.000 9.08 9.08 0.00 4.49
1094 1145 2.740055 CTCCTCCACGTGCAGCAC 60.740 66.667 16.21 16.21 0.00 4.40
1588 1678 6.293626 CGTGGCCCAAATTAAGATCTTATCAG 60.294 42.308 15.82 6.83 0.00 2.90
1681 1779 7.925703 ACACGGTAGTAGAATTAATTGATCG 57.074 36.000 5.17 0.81 0.00 3.69
1764 1968 1.424493 GCAAAGGCCAGAGATCGACG 61.424 60.000 5.01 0.00 0.00 5.12
1766 1970 1.961180 AAAGGCCAGAGATCGACGGG 61.961 60.000 5.01 7.49 0.00 5.28
1807 2015 5.045872 TCGATCATAGAGATGCACAAGTTG 58.954 41.667 0.00 0.00 37.00 3.16
1926 2184 8.989980 ACTCGTTCTTTTTGAGGTAAAATCTAG 58.010 33.333 0.00 0.00 38.03 2.43
1928 2186 9.985730 TCGTTCTTTTTGAGGTAAAATCTAGTA 57.014 29.630 0.00 0.00 38.03 1.82
1938 2196 9.102757 TGAGGTAAAATCTAGTACTGTACTACG 57.897 37.037 20.74 16.61 40.14 3.51
1939 2197 9.103861 GAGGTAAAATCTAGTACTGTACTACGT 57.896 37.037 20.74 14.23 40.14 3.57
1940 2198 9.454859 AGGTAAAATCTAGTACTGTACTACGTT 57.545 33.333 20.74 15.46 40.14 3.99
1941 2199 9.709600 GGTAAAATCTAGTACTGTACTACGTTC 57.290 37.037 20.74 9.56 40.14 3.95
1944 2202 8.783833 AAATCTAGTACTGTACTACGTTCTCA 57.216 34.615 20.74 3.60 40.14 3.27
1945 2203 8.422973 AATCTAGTACTGTACTACGTTCTCAG 57.577 38.462 20.74 12.17 40.14 3.35
1946 2204 6.929625 TCTAGTACTGTACTACGTTCTCAGT 58.070 40.000 20.74 15.50 40.14 3.41
1960 2218 1.621301 CTCAGTCAACTTGAGCGGCG 61.621 60.000 0.51 0.51 0.00 6.46
1966 2258 1.075542 CAACTTGAGCGGCGATACAA 58.924 50.000 12.98 10.41 0.00 2.41
2019 2311 5.780793 AGTGACCAGTCCTAATTGAGTTACT 59.219 40.000 0.00 0.00 0.00 2.24
2021 2313 7.034397 GTGACCAGTCCTAATTGAGTTACTAC 58.966 42.308 0.00 0.00 0.00 2.73
2022 2314 6.154021 TGACCAGTCCTAATTGAGTTACTACC 59.846 42.308 0.00 0.00 0.00 3.18
2024 2316 6.499350 ACCAGTCCTAATTGAGTTACTACCAA 59.501 38.462 0.00 0.00 0.00 3.67
2027 2319 8.718734 CAGTCCTAATTGAGTTACTACCAAAAC 58.281 37.037 0.00 0.00 0.00 2.43
2028 2320 8.434392 AGTCCTAATTGAGTTACTACCAAAACA 58.566 33.333 0.00 0.00 0.00 2.83
2086 2384 1.345089 TGTGTTAGCAGCCCTCGTTAA 59.655 47.619 0.00 0.00 0.00 2.01
2107 2407 3.617540 TTTCGTCATGCAAAACGTCAT 57.382 38.095 19.62 0.00 39.78 3.06
2178 2484 9.454859 CCTCTTATCTCAGTAGGAATTTTTGTT 57.545 33.333 0.00 0.00 0.00 2.83
2180 2486 9.151471 TCTTATCTCAGTAGGAATTTTTGTTCG 57.849 33.333 0.00 0.00 0.00 3.95
2181 2487 9.151471 CTTATCTCAGTAGGAATTTTTGTTCGA 57.849 33.333 0.00 0.00 0.00 3.71
2182 2488 6.780706 TCTCAGTAGGAATTTTTGTTCGAC 57.219 37.500 0.00 0.00 0.00 4.20
2183 2489 6.522054 TCTCAGTAGGAATTTTTGTTCGACT 58.478 36.000 0.00 0.00 0.00 4.18
2184 2490 6.990349 TCTCAGTAGGAATTTTTGTTCGACTT 59.010 34.615 0.00 0.00 0.00 3.01
2185 2491 8.145767 TCTCAGTAGGAATTTTTGTTCGACTTA 58.854 33.333 0.00 0.00 0.00 2.24
2186 2492 8.306680 TCAGTAGGAATTTTTGTTCGACTTAG 57.693 34.615 0.00 0.00 0.00 2.18
2194 2500 2.273370 TGTTCGACTTAGATCGGTGC 57.727 50.000 0.00 0.00 42.50 5.01
2212 2518 0.610232 GCAAAGACCCTCATGCCACT 60.610 55.000 0.00 0.00 32.73 4.00
2219 2525 6.552445 AAGACCCTCATGCCACTATATATC 57.448 41.667 0.00 0.00 0.00 1.63
2250 2818 2.840038 TGCCCTGCCACTATATATCCTG 59.160 50.000 0.00 0.00 0.00 3.86
2251 2819 3.107601 GCCCTGCCACTATATATCCTGA 58.892 50.000 0.00 0.00 0.00 3.86
2252 2820 3.118592 GCCCTGCCACTATATATCCTGAC 60.119 52.174 0.00 0.00 0.00 3.51
2253 2821 4.357325 CCCTGCCACTATATATCCTGACT 58.643 47.826 0.00 0.00 0.00 3.41
2257 3079 6.545666 CCTGCCACTATATATCCTGACTAGAG 59.454 46.154 0.00 0.00 0.00 2.43
2274 3096 7.486647 TGACTAGAGTAATAACGACCCATTTC 58.513 38.462 0.00 0.00 0.00 2.17
2278 3100 5.189145 AGAGTAATAACGACCCATTTCACCT 59.811 40.000 0.00 0.00 0.00 4.00
2280 3102 5.646360 AGTAATAACGACCCATTTCACCTTG 59.354 40.000 0.00 0.00 0.00 3.61
2284 3106 2.360801 ACGACCCATTTCACCTTGTTTG 59.639 45.455 0.00 0.00 0.00 2.93
2287 3109 4.368315 GACCCATTTCACCTTGTTTGAAC 58.632 43.478 0.00 0.00 32.65 3.18
2288 3110 3.133901 ACCCATTTCACCTTGTTTGAACC 59.866 43.478 0.00 0.00 32.65 3.62
2290 3112 4.202346 CCCATTTCACCTTGTTTGAACCAT 60.202 41.667 0.00 0.00 32.65 3.55
2291 3113 5.367302 CCATTTCACCTTGTTTGAACCATT 58.633 37.500 0.00 0.00 32.65 3.16
2292 3114 5.466393 CCATTTCACCTTGTTTGAACCATTC 59.534 40.000 0.00 0.00 32.65 2.67
2293 3115 5.930837 TTTCACCTTGTTTGAACCATTCT 57.069 34.783 0.00 0.00 32.65 2.40
2294 3116 5.930837 TTCACCTTGTTTGAACCATTCTT 57.069 34.783 0.00 0.00 0.00 2.52
2295 3117 5.930837 TCACCTTGTTTGAACCATTCTTT 57.069 34.783 0.00 0.00 0.00 2.52
2296 3118 6.293004 TCACCTTGTTTGAACCATTCTTTT 57.707 33.333 0.00 0.00 0.00 2.27
2297 3119 6.706295 TCACCTTGTTTGAACCATTCTTTTT 58.294 32.000 0.00 0.00 0.00 1.94
2436 3261 3.070878 TGTGTCATGGAGTACTGCTTGAA 59.929 43.478 27.15 17.45 36.98 2.69
2477 3319 1.962321 GAGACGGGGAAGGAGAAGCC 61.962 65.000 0.00 0.00 0.00 4.35
2524 3366 2.430244 CCGACAACGACCTCCACG 60.430 66.667 0.00 0.00 42.66 4.94
2807 3661 2.023741 GCGAACGCGATCTCCGTA 59.976 61.111 15.93 0.00 40.82 4.02
2839 3693 2.520979 CTTGAACGAGACTGGATCGAC 58.479 52.381 10.17 5.29 42.76 4.20
2853 3707 0.469331 ATCGACCGGAGATTAGGCCA 60.469 55.000 9.46 0.00 0.00 5.36
2897 4319 6.054295 GGGCTTTAGGCTATATGATCATCTG 58.946 44.000 12.53 4.89 41.46 2.90
2924 4346 3.266636 TGTGCGTGGAACCATAAGTATG 58.733 45.455 0.00 0.00 0.00 2.39
2946 4368 1.805943 CAGATTTGACGTGCATGGTCA 59.194 47.619 16.72 16.72 42.31 4.02
2947 4369 2.079158 AGATTTGACGTGCATGGTCAG 58.921 47.619 18.90 0.00 44.47 3.51
2952 4374 1.071605 GACGTGCATGGTCAGTTCTC 58.928 55.000 11.36 0.00 34.56 2.87
2963 4385 4.000988 TGGTCAGTTCTCGAATTTAAGGC 58.999 43.478 0.00 0.00 0.00 4.35
3042 4464 0.380378 GACAGGCAGTCGAGAGCTAG 59.620 60.000 8.70 4.82 37.53 3.42
3104 4526 2.452006 GTGTGCACGTATACATTGCC 57.548 50.000 19.00 12.81 35.26 4.52
3152 4577 2.124122 GTTGCGTAAAAAGTTGGCAGG 58.876 47.619 0.00 0.00 34.76 4.85
3158 4583 2.642996 AAAAAGTTGGCAGGGCACGC 62.643 55.000 0.00 0.00 0.00 5.34
3177 4602 1.351017 GCCCATGATCTCCCCGATAAA 59.649 52.381 0.00 0.00 30.84 1.40
3185 4610 4.460382 TGATCTCCCCGATAAATACGTACC 59.540 45.833 0.00 0.00 30.84 3.34
3186 4611 2.813754 TCTCCCCGATAAATACGTACCG 59.186 50.000 0.00 0.00 0.00 4.02
3187 4612 2.554032 CTCCCCGATAAATACGTACCGT 59.446 50.000 0.00 0.00 44.35 4.83
3188 4613 3.745799 TCCCCGATAAATACGTACCGTA 58.254 45.455 0.00 0.00 46.28 4.02
3189 4614 3.500680 TCCCCGATAAATACGTACCGTAC 59.499 47.826 0.00 0.00 45.07 3.67
3216 4641 2.507769 CCGCCCGTACGAGTTTCC 60.508 66.667 18.76 0.00 34.06 3.13
3227 4652 3.249973 GAGTTTCCAACCCGTGCGC 62.250 63.158 0.00 0.00 0.00 6.09
3263 4688 0.242825 GCTGCAGCTTGCTTGAATGA 59.757 50.000 31.33 0.00 45.31 2.57
3287 4743 8.726068 TGAAAATAAAACGACATGCTAGAATCA 58.274 29.630 0.00 0.00 0.00 2.57
3302 4758 6.128553 TGCTAGAATCATCACTCGAAACAAAC 60.129 38.462 0.00 0.00 0.00 2.93
3303 4759 6.091441 GCTAGAATCATCACTCGAAACAAACT 59.909 38.462 0.00 0.00 0.00 2.66
3309 4765 4.742438 TCACTCGAAACAAACTATTGCC 57.258 40.909 0.00 0.00 40.34 4.52
3313 4769 4.691216 ACTCGAAACAAACTATTGCCTCTC 59.309 41.667 0.00 0.00 40.34 3.20
3315 4771 4.690748 TCGAAACAAACTATTGCCTCTCAG 59.309 41.667 0.00 0.00 40.34 3.35
3318 4774 6.313905 CGAAACAAACTATTGCCTCTCAGTAT 59.686 38.462 0.00 0.00 40.34 2.12
3319 4775 7.491372 CGAAACAAACTATTGCCTCTCAGTATA 59.509 37.037 0.00 0.00 40.34 1.47
3320 4776 8.494016 AAACAAACTATTGCCTCTCAGTATAC 57.506 34.615 0.00 0.00 40.34 1.47
3321 4777 7.425224 ACAAACTATTGCCTCTCAGTATACT 57.575 36.000 0.00 0.00 40.34 2.12
3322 4778 7.268586 ACAAACTATTGCCTCTCAGTATACTG 58.731 38.462 24.37 24.37 41.51 2.74
3359 5050 6.421377 AACTTTTGGCTGAAATTTGTGAAC 57.579 33.333 0.00 0.00 0.00 3.18
3586 5297 4.832608 CAGTTCCCCTACCCGCGC 62.833 72.222 0.00 0.00 0.00 6.86
3640 5353 1.578583 GTACGCACACCACAAAGTCT 58.421 50.000 0.00 0.00 0.00 3.24
3651 5364 4.623167 CACCACAAAGTCTCAAGAGATACG 59.377 45.833 2.72 0.00 39.97 3.06
3657 5370 5.467902 AAGTCTCAAGAGATACGACGTAC 57.532 43.478 10.41 4.79 39.97 3.67
3658 5371 3.551082 AGTCTCAAGAGATACGACGTACG 59.449 47.826 15.01 15.01 42.88 3.67
3659 5372 3.305629 GTCTCAAGAGATACGACGTACGT 59.694 47.826 23.04 23.04 44.17 3.57
3691 5404 3.092403 ATGCATGCGCGTGTAGTG 58.908 55.556 29.00 5.47 42.97 2.74
3694 5407 1.343821 GCATGCGCGTGTAGTGTAC 59.656 57.895 29.00 8.34 0.00 2.90
3695 5408 1.995991 CATGCGCGTGTAGTGTACC 59.004 57.895 21.57 0.00 0.00 3.34
3718 5435 2.667473 GGGTGTAACTCGTGCTATGT 57.333 50.000 0.00 0.00 36.74 2.29
3720 5437 1.659098 GGTGTAACTCGTGCTATGTGC 59.341 52.381 0.00 0.00 38.71 4.57
3722 5439 1.068125 TGTAACTCGTGCTATGTGCGT 60.068 47.619 0.00 0.00 46.63 5.24
3723 5440 1.320555 GTAACTCGTGCTATGTGCGTG 59.679 52.381 0.00 0.00 46.63 5.34
3724 5441 1.626654 AACTCGTGCTATGTGCGTGC 61.627 55.000 0.00 0.00 46.63 5.34
3725 5442 3.130424 CTCGTGCTATGTGCGTGCG 62.130 63.158 0.00 0.00 46.63 5.34
3726 5443 3.478394 CGTGCTATGTGCGTGCGT 61.478 61.111 0.00 0.00 46.63 5.24
3727 5444 2.096406 GTGCTATGTGCGTGCGTG 59.904 61.111 0.00 0.00 46.63 5.34
3728 5445 3.787676 TGCTATGTGCGTGCGTGC 61.788 61.111 0.00 0.00 46.63 5.34
3729 5446 4.851114 GCTATGTGCGTGCGTGCG 62.851 66.667 0.00 0.00 37.81 5.34
4065 5782 3.451894 GCCCCCGCAAATGTCCAG 61.452 66.667 0.00 0.00 34.03 3.86
4078 5795 4.985538 AATGTCCAGAGTACGTTCCTAG 57.014 45.455 0.00 0.00 0.00 3.02
4095 5812 6.071728 CGTTCCTAGTACCTTGTTTCTTCCTA 60.072 42.308 0.00 0.00 0.00 2.94
4176 5954 6.035327 ACGAACCTAATTAGTAAATGCGTGTC 59.965 38.462 11.50 1.72 0.00 3.67
4301 6082 2.741517 GTTTCCTCTCAAGAGCAAGCTC 59.258 50.000 14.00 14.00 40.75 4.09
4613 6394 2.520020 TCGTCCACGGACACCACT 60.520 61.111 16.23 0.00 44.77 4.00
4730 6511 2.737830 GAGCCCTACATCCTCGCC 59.262 66.667 0.00 0.00 0.00 5.54
4773 6554 1.915078 GCACCCCATCTACCAGCTGT 61.915 60.000 13.81 3.45 0.00 4.40
5085 8283 0.600782 GGTTCAGGCGTACGTTTCCA 60.601 55.000 17.90 0.00 0.00 3.53
5100 8303 1.927487 TTCCAGCTACTACCCGAACA 58.073 50.000 0.00 0.00 0.00 3.18
5153 8358 2.599281 TTCTGGACGGAGGTGCGA 60.599 61.111 0.00 0.00 37.30 5.10
5324 8529 4.109675 CCGAACCGCCCCTCCATT 62.110 66.667 0.00 0.00 0.00 3.16
5393 8633 2.447443 GAGAAATTCCTGGACAACCCC 58.553 52.381 0.00 0.00 34.81 4.95
5432 8672 4.243008 TTCCCGTCGCAGGTGCAA 62.243 61.111 2.33 0.00 42.21 4.08
5462 8702 4.329545 ATGGCGGTGCTGGACGTT 62.330 61.111 0.00 0.00 0.00 3.99
5585 8833 2.666098 GCTTAAGGCGGTGGAGGGA 61.666 63.158 4.29 0.00 0.00 4.20
5618 8866 2.856222 AGGAACAAGAACAGGAAGCTG 58.144 47.619 0.00 0.00 0.00 4.24
5630 8878 0.250338 GGAAGCTGAAGAACCGGTGT 60.250 55.000 8.52 0.00 0.00 4.16
5728 8983 3.084039 GCACCTCCATCTGATCAAACAA 58.916 45.455 0.00 0.00 0.00 2.83
5753 9008 4.808895 GCTCCAACAAAAACGATTTCCTTT 59.191 37.500 0.00 0.00 0.00 3.11
5775 9030 2.724977 TCTAGCAGACTTGTTGTCCG 57.275 50.000 0.00 0.00 46.46 4.79
5819 9081 2.159156 AGCTTGACACTTCACACGTGTA 60.159 45.455 22.90 5.85 44.95 2.90
5820 9082 2.034001 GCTTGACACTTCACACGTGTAC 60.034 50.000 22.90 7.51 44.95 2.90
5821 9083 3.444916 CTTGACACTTCACACGTGTACT 58.555 45.455 22.90 0.51 44.95 2.73
5822 9084 3.074504 TGACACTTCACACGTGTACTC 57.925 47.619 22.90 9.72 44.95 2.59
6010 9274 4.074970 CTGGTGCTGAAGTTAGATTTGGT 58.925 43.478 0.00 0.00 0.00 3.67
6042 9306 0.250858 CTCCATCAACTGGTGCACCA 60.251 55.000 35.49 35.49 46.08 4.17
6072 9336 2.497368 TCATGGGGGTGTATGGATTCA 58.503 47.619 0.00 0.00 0.00 2.57
6201 9465 4.703645 TTTGTCGAAACAACCACATCAA 57.296 36.364 0.00 0.00 44.90 2.57
6217 9481 4.022068 CACATCAACATTGTAAGCAACCCT 60.022 41.667 0.00 0.00 37.44 4.34
6237 9501 2.203773 CCCCCACCCCCAACAAAG 60.204 66.667 0.00 0.00 0.00 2.77
6238 9502 2.784654 CCCCCACCCCCAACAAAGA 61.785 63.158 0.00 0.00 0.00 2.52
6239 9503 1.234529 CCCCACCCCCAACAAAGAA 59.765 57.895 0.00 0.00 0.00 2.52
6240 9504 0.831711 CCCCACCCCCAACAAAGAAG 60.832 60.000 0.00 0.00 0.00 2.85
6241 9505 0.187361 CCCACCCCCAACAAAGAAGA 59.813 55.000 0.00 0.00 0.00 2.87
6242 9506 1.412361 CCCACCCCCAACAAAGAAGAA 60.412 52.381 0.00 0.00 0.00 2.52
6318 9844 8.143835 ACTCAGCATAAAAGTAACATTTTGCTT 58.856 29.630 1.58 0.00 39.14 3.91
6335 9861 2.572104 TGCTTTCTTTAGAGGTCCTCCC 59.428 50.000 15.72 0.00 0.00 4.30
6356 9883 1.524008 AAAAACCTAGCCGCTGCCAC 61.524 55.000 2.16 0.00 38.69 5.01
6364 9891 1.526917 GCCGCTGCCACCATAGATT 60.527 57.895 0.00 0.00 0.00 2.40
6379 9906 0.624795 AGATTGGTTCCCCCTCCTCC 60.625 60.000 0.00 0.00 0.00 4.30
6429 9956 2.821991 GGAACCCGATCTATGAGTGG 57.178 55.000 0.00 0.00 0.00 4.00
6482 10340 5.897250 AGATTGGTTTTGAGTTTTGGGTAGT 59.103 36.000 0.00 0.00 0.00 2.73
6502 10360 7.560626 GGGTAGTTGTCTTCTTCCTTAGAGATA 59.439 40.741 0.00 0.00 33.51 1.98
6565 10423 0.450983 GAGATCTTCCCGACGTCGTT 59.549 55.000 33.49 12.88 37.74 3.85
6633 10491 0.312416 TTTTGTCATGGTTTCCGCGG 59.688 50.000 22.12 22.12 0.00 6.46
6635 10493 3.810896 GTCATGGTTTCCGCGGGC 61.811 66.667 27.83 15.75 0.00 6.13
6690 10548 6.663093 TGCTACATCCTTAACAATGGTGATTT 59.337 34.615 0.00 0.00 0.00 2.17
6707 10565 1.344065 TTTGTACTCTCGGCTCCCAA 58.656 50.000 0.00 0.00 0.00 4.12
6708 10566 1.344065 TTGTACTCTCGGCTCCCAAA 58.656 50.000 0.00 0.00 0.00 3.28
6719 10577 1.452108 CTCCCAAAGTCATCGGCCC 60.452 63.158 0.00 0.00 0.00 5.80
6720 10578 2.824041 CCCAAAGTCATCGGCCCG 60.824 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.348998 CTTCTGGGAAGCCGCACT 59.651 61.111 0.00 0.00 0.00 4.40
1 2 2.747855 CCTTCTGGGAAGCCGCAC 60.748 66.667 0.00 0.00 37.23 5.34
11 12 4.821589 GAGTCGCCGCCCTTCTGG 62.822 72.222 0.00 0.00 37.09 3.86
12 13 3.376935 ATGAGTCGCCGCCCTTCTG 62.377 63.158 0.00 0.00 0.00 3.02
13 14 3.077556 ATGAGTCGCCGCCCTTCT 61.078 61.111 0.00 0.00 0.00 2.85
14 15 2.586357 GATGAGTCGCCGCCCTTC 60.586 66.667 0.00 0.00 0.00 3.46
15 16 4.514577 CGATGAGTCGCCGCCCTT 62.515 66.667 0.00 0.00 41.49 3.95
33 34 4.527157 GATGACTTGCTGCGCCGC 62.527 66.667 17.60 17.60 0.00 6.53
34 35 4.214383 CGATGACTTGCTGCGCCG 62.214 66.667 4.18 0.00 0.00 6.46
35 36 2.815211 TCGATGACTTGCTGCGCC 60.815 61.111 4.18 0.00 0.00 6.53
36 37 2.397252 GTCGATGACTTGCTGCGC 59.603 61.111 0.00 0.00 0.00 6.09
37 38 1.737196 CTCGTCGATGACTTGCTGCG 61.737 60.000 2.39 0.00 0.00 5.18
38 39 1.994467 CTCGTCGATGACTTGCTGC 59.006 57.895 2.39 0.00 0.00 5.25
39 40 0.733909 TGCTCGTCGATGACTTGCTG 60.734 55.000 15.74 2.65 32.73 4.41
40 41 0.734253 GTGCTCGTCGATGACTTGCT 60.734 55.000 15.74 0.00 32.73 3.91
41 42 1.687494 GGTGCTCGTCGATGACTTGC 61.687 60.000 2.39 6.82 0.00 4.01
42 43 1.406219 CGGTGCTCGTCGATGACTTG 61.406 60.000 2.39 0.00 0.00 3.16
43 44 1.154016 CGGTGCTCGTCGATGACTT 60.154 57.895 2.39 0.00 0.00 3.01
44 45 2.485582 CGGTGCTCGTCGATGACT 59.514 61.111 2.39 0.00 0.00 3.41
45 46 3.248171 GCGGTGCTCGTCGATGAC 61.248 66.667 2.39 1.94 41.72 3.06
46 47 4.829518 CGCGGTGCTCGTCGATGA 62.830 66.667 7.21 7.21 41.72 2.92
60 61 4.514577 ATGGTCGAAGGAGGCGCG 62.515 66.667 0.00 0.00 0.00 6.86
61 62 2.892425 CATGGTCGAAGGAGGCGC 60.892 66.667 0.00 0.00 0.00 6.53
62 63 1.519455 GTCATGGTCGAAGGAGGCG 60.519 63.158 0.00 0.00 0.00 5.52
63 64 1.519455 CGTCATGGTCGAAGGAGGC 60.519 63.158 5.53 0.00 0.00 4.70
64 65 0.747255 ATCGTCATGGTCGAAGGAGG 59.253 55.000 15.21 0.00 40.61 4.30
65 66 1.536922 CCATCGTCATGGTCGAAGGAG 60.537 57.143 21.52 11.45 45.14 3.69
66 67 0.459899 CCATCGTCATGGTCGAAGGA 59.540 55.000 21.52 3.61 45.14 3.36
67 68 2.977700 CCATCGTCATGGTCGAAGG 58.022 57.895 16.19 16.19 44.46 3.46
75 76 1.300465 CGCTCCTCCCATCGTCATG 60.300 63.158 0.00 0.00 0.00 3.07
76 77 2.502492 CCGCTCCTCCCATCGTCAT 61.502 63.158 0.00 0.00 0.00 3.06
77 78 3.147595 CCGCTCCTCCCATCGTCA 61.148 66.667 0.00 0.00 0.00 4.35
78 79 4.593864 GCCGCTCCTCCCATCGTC 62.594 72.222 0.00 0.00 0.00 4.20
81 82 4.593864 GTCGCCGCTCCTCCCATC 62.594 72.222 0.00 0.00 0.00 3.51
86 87 4.500116 GTCCTGTCGCCGCTCCTC 62.500 72.222 0.00 0.00 0.00 3.71
89 90 4.194720 ATCGTCCTGTCGCCGCTC 62.195 66.667 0.00 0.00 0.00 5.03
90 91 4.498520 CATCGTCCTGTCGCCGCT 62.499 66.667 0.00 0.00 0.00 5.52
92 93 4.129737 ACCATCGTCCTGTCGCCG 62.130 66.667 0.00 0.00 0.00 6.46
93 94 2.202756 GACCATCGTCCTGTCGCC 60.203 66.667 0.00 0.00 32.40 5.54
94 95 2.579787 CGACCATCGTCCTGTCGC 60.580 66.667 0.00 0.00 44.29 5.19
96 97 2.202756 GCCGACCATCGTCCTGTC 60.203 66.667 0.00 0.00 38.40 3.51
97 98 4.129737 CGCCGACCATCGTCCTGT 62.130 66.667 0.00 0.00 38.40 4.00
98 99 3.138930 ATCGCCGACCATCGTCCTG 62.139 63.158 0.00 0.00 38.40 3.86
99 100 2.833582 ATCGCCGACCATCGTCCT 60.834 61.111 0.00 0.00 38.40 3.85
100 101 1.512996 TAGATCGCCGACCATCGTCC 61.513 60.000 0.00 0.00 38.40 4.79
101 102 0.522180 ATAGATCGCCGACCATCGTC 59.478 55.000 0.00 0.00 38.40 4.20
102 103 0.959553 AATAGATCGCCGACCATCGT 59.040 50.000 0.00 0.00 38.40 3.73
103 104 1.340658 CAATAGATCGCCGACCATCG 58.659 55.000 0.00 0.00 40.07 3.84
104 105 1.272490 TCCAATAGATCGCCGACCATC 59.728 52.381 0.00 0.00 0.00 3.51
105 106 1.000955 GTCCAATAGATCGCCGACCAT 59.999 52.381 0.00 0.00 0.00 3.55
106 107 0.387929 GTCCAATAGATCGCCGACCA 59.612 55.000 0.00 0.00 0.00 4.02
107 108 0.387929 TGTCCAATAGATCGCCGACC 59.612 55.000 0.00 0.00 0.00 4.79
108 109 2.061773 CATGTCCAATAGATCGCCGAC 58.938 52.381 0.00 0.00 0.00 4.79
109 110 1.605457 GCATGTCCAATAGATCGCCGA 60.605 52.381 0.00 0.00 0.00 5.54
110 111 0.792640 GCATGTCCAATAGATCGCCG 59.207 55.000 0.00 0.00 0.00 6.46
111 112 1.802960 CTGCATGTCCAATAGATCGCC 59.197 52.381 0.00 0.00 0.00 5.54
112 113 1.802960 CCTGCATGTCCAATAGATCGC 59.197 52.381 0.00 0.00 0.00 4.58
113 114 1.802960 GCCTGCATGTCCAATAGATCG 59.197 52.381 0.00 0.00 0.00 3.69
114 115 1.802960 CGCCTGCATGTCCAATAGATC 59.197 52.381 0.00 0.00 0.00 2.75
115 116 1.544093 CCGCCTGCATGTCCAATAGAT 60.544 52.381 0.00 0.00 0.00 1.98
116 117 0.179048 CCGCCTGCATGTCCAATAGA 60.179 55.000 0.00 0.00 0.00 1.98
117 118 1.789078 GCCGCCTGCATGTCCAATAG 61.789 60.000 0.00 0.00 40.77 1.73
118 119 1.823470 GCCGCCTGCATGTCCAATA 60.823 57.895 0.00 0.00 40.77 1.90
119 120 3.142838 GCCGCCTGCATGTCCAAT 61.143 61.111 0.00 0.00 40.77 3.16
135 136 2.433318 GTCACGGCTGACCTCTGC 60.433 66.667 0.00 0.00 41.06 4.26
157 158 3.893763 TTGTGTGTTTGGCGGCGG 61.894 61.111 9.78 0.00 0.00 6.13
158 159 2.653766 GTTGTGTGTTTGGCGGCG 60.654 61.111 0.51 0.51 0.00 6.46
159 160 1.299089 GAGTTGTGTGTTTGGCGGC 60.299 57.895 0.00 0.00 0.00 6.53
160 161 1.010125 CGAGTTGTGTGTTTGGCGG 60.010 57.895 0.00 0.00 0.00 6.13
161 162 0.315869 GACGAGTTGTGTGTTTGGCG 60.316 55.000 0.00 0.00 0.00 5.69
162 163 0.028902 GGACGAGTTGTGTGTTTGGC 59.971 55.000 0.00 0.00 0.00 4.52
163 164 1.063469 GTGGACGAGTTGTGTGTTTGG 59.937 52.381 0.00 0.00 0.00 3.28
164 165 1.735018 TGTGGACGAGTTGTGTGTTTG 59.265 47.619 0.00 0.00 0.00 2.93
165 166 1.735571 GTGTGGACGAGTTGTGTGTTT 59.264 47.619 0.00 0.00 0.00 2.83
166 167 1.365699 GTGTGGACGAGTTGTGTGTT 58.634 50.000 0.00 0.00 0.00 3.32
167 168 3.059603 GTGTGGACGAGTTGTGTGT 57.940 52.632 0.00 0.00 0.00 3.72
189 190 4.825679 CAGACCCTCCCCTCCCCC 62.826 77.778 0.00 0.00 0.00 5.40
190 191 2.569373 AATCAGACCCTCCCCTCCCC 62.569 65.000 0.00 0.00 0.00 4.81
191 192 1.004891 AATCAGACCCTCCCCTCCC 59.995 63.158 0.00 0.00 0.00 4.30
192 193 1.988982 GCAATCAGACCCTCCCCTCC 61.989 65.000 0.00 0.00 0.00 4.30
193 194 0.985490 AGCAATCAGACCCTCCCCTC 60.985 60.000 0.00 0.00 0.00 4.30
194 195 0.551131 AAGCAATCAGACCCTCCCCT 60.551 55.000 0.00 0.00 0.00 4.79
195 196 0.332972 AAAGCAATCAGACCCTCCCC 59.667 55.000 0.00 0.00 0.00 4.81
196 197 2.095461 GAAAAGCAATCAGACCCTCCC 58.905 52.381 0.00 0.00 0.00 4.30
197 198 3.078891 AGAAAAGCAATCAGACCCTCC 57.921 47.619 0.00 0.00 0.00 4.30
198 199 5.459536 AAAAGAAAAGCAATCAGACCCTC 57.540 39.130 0.00 0.00 0.00 4.30
199 200 5.876651 AAAAAGAAAAGCAATCAGACCCT 57.123 34.783 0.00 0.00 0.00 4.34
219 220 6.607019 ACACAAACACCCCTAGATCTAAAAA 58.393 36.000 3.57 0.00 0.00 1.94
220 221 6.195600 ACACAAACACCCCTAGATCTAAAA 57.804 37.500 3.57 0.00 0.00 1.52
221 222 5.836024 ACACAAACACCCCTAGATCTAAA 57.164 39.130 3.57 0.00 0.00 1.85
222 223 5.836024 AACACAAACACCCCTAGATCTAA 57.164 39.130 3.57 0.00 0.00 2.10
223 224 7.504926 AATAACACAAACACCCCTAGATCTA 57.495 36.000 1.69 1.69 0.00 1.98
224 225 6.388619 AATAACACAAACACCCCTAGATCT 57.611 37.500 0.00 0.00 0.00 2.75
225 226 7.462571 AAAATAACACAAACACCCCTAGATC 57.537 36.000 0.00 0.00 0.00 2.75
226 227 7.849322 AAAAATAACACAAACACCCCTAGAT 57.151 32.000 0.00 0.00 0.00 1.98
249 250 8.685838 ATTGTAAGGTACTGACTTAGCAAAAA 57.314 30.769 0.00 0.00 41.46 1.94
250 251 8.154856 AGATTGTAAGGTACTGACTTAGCAAAA 58.845 33.333 0.00 0.00 41.46 2.44
251 252 7.602644 CAGATTGTAAGGTACTGACTTAGCAAA 59.397 37.037 0.00 0.00 41.46 3.68
252 253 7.097192 CAGATTGTAAGGTACTGACTTAGCAA 58.903 38.462 0.00 1.61 41.46 3.91
253 254 6.631016 CAGATTGTAAGGTACTGACTTAGCA 58.369 40.000 0.00 0.00 41.46 3.49
254 255 5.520649 GCAGATTGTAAGGTACTGACTTAGC 59.479 44.000 0.00 0.00 41.46 3.09
255 256 6.043411 GGCAGATTGTAAGGTACTGACTTAG 58.957 44.000 0.00 0.00 41.46 2.18
256 257 5.105064 GGGCAGATTGTAAGGTACTGACTTA 60.105 44.000 0.00 0.00 41.46 2.24
257 258 4.323562 GGGCAGATTGTAAGGTACTGACTT 60.324 45.833 0.00 0.00 41.46 3.01
258 259 3.197983 GGGCAGATTGTAAGGTACTGACT 59.802 47.826 0.00 0.00 41.46 3.41
259 260 3.532542 GGGCAGATTGTAAGGTACTGAC 58.467 50.000 0.00 0.00 41.22 3.51
260 261 2.504175 GGGGCAGATTGTAAGGTACTGA 59.496 50.000 0.00 0.00 40.86 3.41
261 262 2.421529 GGGGGCAGATTGTAAGGTACTG 60.422 54.545 0.00 0.00 40.86 2.74
263 264 1.562475 TGGGGGCAGATTGTAAGGTAC 59.438 52.381 0.00 0.00 0.00 3.34
264 265 1.562475 GTGGGGGCAGATTGTAAGGTA 59.438 52.381 0.00 0.00 0.00 3.08
265 266 0.331616 GTGGGGGCAGATTGTAAGGT 59.668 55.000 0.00 0.00 0.00 3.50
266 267 0.625849 AGTGGGGGCAGATTGTAAGG 59.374 55.000 0.00 0.00 0.00 2.69
267 268 2.094675 CAAGTGGGGGCAGATTGTAAG 58.905 52.381 0.00 0.00 0.00 2.34
268 269 1.427368 ACAAGTGGGGGCAGATTGTAA 59.573 47.619 0.00 0.00 32.58 2.41
269 270 1.072266 ACAAGTGGGGGCAGATTGTA 58.928 50.000 0.00 0.00 32.58 2.41
270 271 1.072266 TACAAGTGGGGGCAGATTGT 58.928 50.000 0.00 0.00 37.77 2.71
271 272 2.094675 CTTACAAGTGGGGGCAGATTG 58.905 52.381 0.00 0.00 0.00 2.67
272 273 1.992557 TCTTACAAGTGGGGGCAGATT 59.007 47.619 0.00 0.00 0.00 2.40
273 274 1.668826 TCTTACAAGTGGGGGCAGAT 58.331 50.000 0.00 0.00 0.00 2.90
274 275 1.440618 TTCTTACAAGTGGGGGCAGA 58.559 50.000 0.00 0.00 0.00 4.26
275 276 2.162681 CTTTCTTACAAGTGGGGGCAG 58.837 52.381 0.00 0.00 0.00 4.85
276 277 1.497286 ACTTTCTTACAAGTGGGGGCA 59.503 47.619 0.00 0.00 35.57 5.36
277 278 1.886542 CACTTTCTTACAAGTGGGGGC 59.113 52.381 5.78 0.00 46.84 5.80
283 284 8.135529 GGCTTGTTTAATCACTTTCTTACAAGT 58.864 33.333 0.00 0.00 41.80 3.16
284 285 8.134895 TGGCTTGTTTAATCACTTTCTTACAAG 58.865 33.333 0.00 0.00 42.35 3.16
285 286 8.001881 TGGCTTGTTTAATCACTTTCTTACAA 57.998 30.769 0.00 0.00 0.00 2.41
286 287 7.575414 TGGCTTGTTTAATCACTTTCTTACA 57.425 32.000 0.00 0.00 0.00 2.41
287 288 8.865590 TTTGGCTTGTTTAATCACTTTCTTAC 57.134 30.769 0.00 0.00 0.00 2.34
288 289 9.691362 GATTTGGCTTGTTTAATCACTTTCTTA 57.309 29.630 0.00 0.00 0.00 2.10
289 290 8.203485 TGATTTGGCTTGTTTAATCACTTTCTT 58.797 29.630 0.00 0.00 33.41 2.52
290 291 7.653311 GTGATTTGGCTTGTTTAATCACTTTCT 59.347 33.333 15.71 0.00 46.67 2.52
291 292 7.787084 GTGATTTGGCTTGTTTAATCACTTTC 58.213 34.615 15.71 0.00 46.67 2.62
292 293 7.713764 GTGATTTGGCTTGTTTAATCACTTT 57.286 32.000 15.71 0.00 46.67 2.66
296 297 4.321601 CGGGTGATTTGGCTTGTTTAATCA 60.322 41.667 0.00 0.00 35.33 2.57
297 298 4.082463 TCGGGTGATTTGGCTTGTTTAATC 60.082 41.667 0.00 0.00 0.00 1.75
298 299 3.829601 TCGGGTGATTTGGCTTGTTTAAT 59.170 39.130 0.00 0.00 0.00 1.40
299 300 3.223435 TCGGGTGATTTGGCTTGTTTAA 58.777 40.909 0.00 0.00 0.00 1.52
300 301 2.865079 TCGGGTGATTTGGCTTGTTTA 58.135 42.857 0.00 0.00 0.00 2.01
301 302 1.698506 TCGGGTGATTTGGCTTGTTT 58.301 45.000 0.00 0.00 0.00 2.83
302 303 1.818674 GATCGGGTGATTTGGCTTGTT 59.181 47.619 0.00 0.00 34.09 2.83
303 304 1.271871 TGATCGGGTGATTTGGCTTGT 60.272 47.619 0.00 0.00 34.09 3.16
304 305 1.402968 CTGATCGGGTGATTTGGCTTG 59.597 52.381 0.00 0.00 34.09 4.01
305 306 1.004745 ACTGATCGGGTGATTTGGCTT 59.995 47.619 6.47 0.00 34.09 4.35
306 307 0.620556 ACTGATCGGGTGATTTGGCT 59.379 50.000 6.47 0.00 34.09 4.75
307 308 0.734889 CACTGATCGGGTGATTTGGC 59.265 55.000 6.47 0.00 36.89 4.52
308 309 2.113860 ACACTGATCGGGTGATTTGG 57.886 50.000 20.52 0.00 38.01 3.28
309 310 4.503741 AAAACACTGATCGGGTGATTTG 57.496 40.909 20.52 5.96 37.93 2.32
328 329 7.637907 GCAAAATCATTTAAGTCGTTGCAAAAA 59.362 29.630 0.00 0.00 39.82 1.94
329 330 7.122550 GCAAAATCATTTAAGTCGTTGCAAAA 58.877 30.769 0.00 0.00 39.82 2.44
330 331 6.561166 CGCAAAATCATTTAAGTCGTTGCAAA 60.561 34.615 0.00 0.00 40.00 3.68
331 332 5.108065 CGCAAAATCATTTAAGTCGTTGCAA 60.108 36.000 0.00 0.00 40.00 4.08
332 333 4.381270 CGCAAAATCATTTAAGTCGTTGCA 59.619 37.500 0.00 0.00 40.00 4.08
333 334 4.201485 CCGCAAAATCATTTAAGTCGTTGC 60.201 41.667 0.00 0.00 37.38 4.17
334 335 4.915085 ACCGCAAAATCATTTAAGTCGTTG 59.085 37.500 0.00 0.00 0.00 4.10
335 336 4.915085 CACCGCAAAATCATTTAAGTCGTT 59.085 37.500 0.00 0.00 0.00 3.85
336 337 4.023536 ACACCGCAAAATCATTTAAGTCGT 60.024 37.500 0.00 0.00 0.00 4.34
337 338 4.472286 ACACCGCAAAATCATTTAAGTCG 58.528 39.130 0.00 0.00 0.00 4.18
338 339 6.763303 AAACACCGCAAAATCATTTAAGTC 57.237 33.333 0.00 0.00 0.00 3.01
339 340 7.546778 AAAAACACCGCAAAATCATTTAAGT 57.453 28.000 0.00 0.00 0.00 2.24
360 361 2.663334 CGTCGCTAATCCGTTGCAAAAA 60.663 45.455 0.00 0.00 0.00 1.94
361 362 1.136197 CGTCGCTAATCCGTTGCAAAA 60.136 47.619 0.00 0.00 0.00 2.44
362 363 0.440758 CGTCGCTAATCCGTTGCAAA 59.559 50.000 0.00 0.00 0.00 3.68
363 364 1.962092 GCGTCGCTAATCCGTTGCAA 61.962 55.000 10.68 0.00 32.64 4.08
364 365 2.449525 GCGTCGCTAATCCGTTGCA 61.450 57.895 10.68 0.00 32.64 4.08
365 366 2.320044 GCGTCGCTAATCCGTTGC 59.680 61.111 10.68 0.00 0.00 4.17
366 367 2.856346 CGGCGTCGCTAATCCGTTG 61.856 63.158 18.11 0.00 37.33 4.10
367 368 2.581409 CGGCGTCGCTAATCCGTT 60.581 61.111 18.11 0.00 37.33 4.44
377 378 0.043053 CTATCACATTTGCGGCGTCG 60.043 55.000 4.29 4.29 39.81 5.12
378 379 1.006832 ACTATCACATTTGCGGCGTC 58.993 50.000 9.37 0.91 0.00 5.19
379 380 1.448985 AACTATCACATTTGCGGCGT 58.551 45.000 9.37 0.00 0.00 5.68
380 381 2.095853 AGAAACTATCACATTTGCGGCG 59.904 45.455 0.51 0.51 0.00 6.46
381 382 3.764885 AGAAACTATCACATTTGCGGC 57.235 42.857 0.00 0.00 0.00 6.53
382 383 3.853671 GCAAGAAACTATCACATTTGCGG 59.146 43.478 0.00 0.00 29.39 5.69
383 384 4.475028 TGCAAGAAACTATCACATTTGCG 58.525 39.130 0.00 0.00 37.96 4.85
384 385 6.956299 ATTGCAAGAAACTATCACATTTGC 57.044 33.333 4.94 0.00 36.53 3.68
385 386 8.430063 GTCAATTGCAAGAAACTATCACATTTG 58.570 33.333 4.94 0.00 0.00 2.32
386 387 8.362639 AGTCAATTGCAAGAAACTATCACATTT 58.637 29.630 4.94 0.00 0.00 2.32
387 388 7.889469 AGTCAATTGCAAGAAACTATCACATT 58.111 30.769 4.94 0.00 0.00 2.71
388 389 7.392673 AGAGTCAATTGCAAGAAACTATCACAT 59.607 33.333 4.94 0.00 0.00 3.21
389 390 6.712095 AGAGTCAATTGCAAGAAACTATCACA 59.288 34.615 4.94 0.00 0.00 3.58
390 391 7.020010 CAGAGTCAATTGCAAGAAACTATCAC 58.980 38.462 4.94 0.00 0.00 3.06
391 392 6.712095 ACAGAGTCAATTGCAAGAAACTATCA 59.288 34.615 4.94 0.00 0.00 2.15
392 393 7.138692 ACAGAGTCAATTGCAAGAAACTATC 57.861 36.000 4.94 0.00 0.00 2.08
393 394 7.229306 TCAACAGAGTCAATTGCAAGAAACTAT 59.771 33.333 4.94 2.33 0.00 2.12
394 395 6.542005 TCAACAGAGTCAATTGCAAGAAACTA 59.458 34.615 4.94 0.00 0.00 2.24
395 396 5.357878 TCAACAGAGTCAATTGCAAGAAACT 59.642 36.000 4.94 7.67 0.00 2.66
396 397 5.581605 TCAACAGAGTCAATTGCAAGAAAC 58.418 37.500 4.94 2.49 0.00 2.78
397 398 5.833406 TCAACAGAGTCAATTGCAAGAAA 57.167 34.783 4.94 0.00 0.00 2.52
398 399 5.589855 TCTTCAACAGAGTCAATTGCAAGAA 59.410 36.000 4.94 0.00 0.00 2.52
399 400 5.125356 TCTTCAACAGAGTCAATTGCAAGA 58.875 37.500 4.94 0.00 0.00 3.02
400 401 5.428496 TCTTCAACAGAGTCAATTGCAAG 57.572 39.130 4.94 0.00 0.00 4.01
401 402 5.833406 TTCTTCAACAGAGTCAATTGCAA 57.167 34.783 0.00 0.00 31.12 4.08
402 403 5.221106 CCTTTCTTCAACAGAGTCAATTGCA 60.221 40.000 0.00 0.00 31.12 4.08
403 404 5.218139 CCTTTCTTCAACAGAGTCAATTGC 58.782 41.667 0.00 0.00 31.12 3.56
404 405 5.218139 GCCTTTCTTCAACAGAGTCAATTG 58.782 41.667 0.00 0.00 31.12 2.32
405 406 4.889409 TGCCTTTCTTCAACAGAGTCAATT 59.111 37.500 0.00 0.00 31.12 2.32
406 407 4.464008 TGCCTTTCTTCAACAGAGTCAAT 58.536 39.130 0.00 0.00 31.12 2.57
407 408 3.884895 TGCCTTTCTTCAACAGAGTCAA 58.115 40.909 0.00 0.00 31.12 3.18
408 409 3.558931 TGCCTTTCTTCAACAGAGTCA 57.441 42.857 0.00 0.00 31.12 3.41
409 410 4.094146 GCTATGCCTTTCTTCAACAGAGTC 59.906 45.833 0.00 0.00 31.12 3.36
410 411 4.006319 GCTATGCCTTTCTTCAACAGAGT 58.994 43.478 0.00 0.00 31.12 3.24
411 412 4.260170 AGCTATGCCTTTCTTCAACAGAG 58.740 43.478 0.00 0.00 31.12 3.35
412 413 4.256920 GAGCTATGCCTTTCTTCAACAGA 58.743 43.478 0.00 0.00 0.00 3.41
419 420 4.844349 TTACTGGAGCTATGCCTTTCTT 57.156 40.909 0.00 0.00 0.00 2.52
451 452 3.214328 GGACAGTGGTTTGAGATTGTGT 58.786 45.455 0.00 0.00 0.00 3.72
472 473 2.821546 TCGTGGTTCAGTTCTTGTCTG 58.178 47.619 0.00 0.00 0.00 3.51
476 477 2.287915 CAGGTTCGTGGTTCAGTTCTTG 59.712 50.000 0.00 0.00 0.00 3.02
527 528 5.785599 CGTCGACTGTTGATTCATCTTTTTC 59.214 40.000 14.70 0.00 0.00 2.29
588 590 1.211212 GTCGCCAGGTTAGGGGTTTAT 59.789 52.381 0.00 0.00 41.92 1.40
602 604 4.943822 TTGTGTGACAAGTCGCCA 57.056 50.000 10.89 6.17 39.23 5.69
670 672 1.430632 CTTCGAGGCGGCTACGTAA 59.569 57.895 13.24 11.97 43.45 3.18
679 681 3.781770 CTGGGCTAGCTTCGAGGCG 62.782 68.421 15.72 1.75 40.30 5.52
695 697 3.849911 TCGTGAATCAAGTTCTAGGCTG 58.150 45.455 0.00 0.00 37.72 4.85
707 709 6.097129 TGGGTACATGTTACTATCGTGAATCA 59.903 38.462 2.30 0.00 0.00 2.57
708 710 6.420008 GTGGGTACATGTTACTATCGTGAATC 59.580 42.308 2.30 0.00 0.00 2.52
711 713 4.201940 CGTGGGTACATGTTACTATCGTGA 60.202 45.833 2.30 0.00 0.00 4.35
736 738 3.777925 CAGTACGTGCGGTGCAGC 61.778 66.667 5.64 5.64 40.08 5.25
756 758 3.875134 TCCTTGAGTTTCTGGTCGAAAAC 59.125 43.478 2.84 2.84 42.87 2.43
778 780 0.178533 TGGTCGACGGTTCCTTTGTT 59.821 50.000 9.92 0.00 0.00 2.83
819 842 5.658190 GCATGGGCATGGGATTATATAAACT 59.342 40.000 0.00 0.00 40.72 2.66
1005 1050 1.339535 GGTTTGAGCTGAGGAGGAAGG 60.340 57.143 0.00 0.00 0.00 3.46
1008 1053 1.556911 GATGGTTTGAGCTGAGGAGGA 59.443 52.381 0.00 0.00 0.00 3.71
1009 1054 1.407989 GGATGGTTTGAGCTGAGGAGG 60.408 57.143 0.00 0.00 0.00 4.30
1010 1055 1.280133 TGGATGGTTTGAGCTGAGGAG 59.720 52.381 0.00 0.00 0.00 3.69
1359 1410 1.208052 AGGTCCTTCACATCGTCCATG 59.792 52.381 0.00 0.00 38.64 3.66
1449 1523 1.915350 CGTGCATGCATGTCAATGTTC 59.085 47.619 28.25 9.36 36.08 3.18
1588 1678 2.846193 TGTCCTTATAATGCCTTCGCC 58.154 47.619 0.00 0.00 0.00 5.54
1605 1695 6.959671 TTGAATTTTCTTTGTGGTGTTGTC 57.040 33.333 0.00 0.00 0.00 3.18
1606 1696 6.128688 CGTTTGAATTTTCTTTGTGGTGTTGT 60.129 34.615 0.00 0.00 0.00 3.32
1607 1697 6.239945 CGTTTGAATTTTCTTTGTGGTGTTG 58.760 36.000 0.00 0.00 0.00 3.33
1651 1744 8.333186 CAATTAATTCTACTACCGTGTTTAGCC 58.667 37.037 0.00 0.00 0.00 3.93
1681 1779 6.943981 TGATTCATTTATTCATTCGTCCGTC 58.056 36.000 0.00 0.00 0.00 4.79
1714 1829 7.403312 AGCACATCTGTTAGCTATATAGGAG 57.597 40.000 11.72 0.00 35.19 3.69
1715 1830 9.480861 AATAGCACATCTGTTAGCTATATAGGA 57.519 33.333 11.72 0.00 46.38 2.94
1716 1831 9.526713 CAATAGCACATCTGTTAGCTATATAGG 57.473 37.037 11.72 0.00 46.38 2.57
1764 1968 0.246086 TGGATGATTTTTGCGCACCC 59.754 50.000 11.12 1.92 0.00 4.61
1766 1970 1.847999 CGATGGATGATTTTTGCGCAC 59.152 47.619 11.12 0.00 0.00 5.34
1807 2015 3.359950 ACTGATGATTTTTCCTCCAGGC 58.640 45.455 0.00 0.00 34.44 4.85
1891 2103 8.557029 ACCTCAAAAAGAACGAGTAAGTTATTG 58.443 33.333 0.00 0.00 35.94 1.90
1898 2110 9.333724 AGATTTTACCTCAAAAAGAACGAGTAA 57.666 29.630 0.00 0.00 39.51 2.24
1926 2184 5.852738 TGACTGAGAACGTAGTACAGTAC 57.147 43.478 14.27 2.05 45.00 2.73
1928 2186 4.820716 AGTTGACTGAGAACGTAGTACAGT 59.179 41.667 14.22 14.22 45.00 3.55
1929 2187 5.359716 AGTTGACTGAGAACGTAGTACAG 57.640 43.478 0.38 0.00 45.00 2.74
1930 2188 5.297527 TCAAGTTGACTGAGAACGTAGTACA 59.702 40.000 0.08 0.00 45.00 2.90
1931 2189 5.755813 TCAAGTTGACTGAGAACGTAGTAC 58.244 41.667 0.08 0.00 45.00 2.73
1932 2190 5.562307 GCTCAAGTTGACTGAGAACGTAGTA 60.562 44.000 0.08 0.00 45.00 1.82
1934 2192 3.670991 GCTCAAGTTGACTGAGAACGTAG 59.329 47.826 0.08 0.00 31.79 3.51
1935 2193 3.639538 GCTCAAGTTGACTGAGAACGTA 58.360 45.455 0.08 0.00 31.79 3.57
1936 2194 2.474816 GCTCAAGTTGACTGAGAACGT 58.525 47.619 0.08 0.00 31.79 3.99
1937 2195 1.453524 CGCTCAAGTTGACTGAGAACG 59.546 52.381 0.08 5.51 31.79 3.95
1938 2196 1.795286 CCGCTCAAGTTGACTGAGAAC 59.205 52.381 0.08 0.00 31.79 3.01
1939 2197 1.873903 GCCGCTCAAGTTGACTGAGAA 60.874 52.381 0.08 0.00 31.79 2.87
1940 2198 0.319900 GCCGCTCAAGTTGACTGAGA 60.320 55.000 0.08 2.15 31.79 3.27
1941 2199 1.621301 CGCCGCTCAAGTTGACTGAG 61.621 60.000 0.08 0.00 0.00 3.35
1942 2200 1.664649 CGCCGCTCAAGTTGACTGA 60.665 57.895 0.08 0.00 0.00 3.41
1943 2201 1.016130 ATCGCCGCTCAAGTTGACTG 61.016 55.000 0.08 0.00 0.00 3.51
1944 2202 0.530744 TATCGCCGCTCAAGTTGACT 59.469 50.000 0.08 0.00 0.00 3.41
1945 2203 0.645868 GTATCGCCGCTCAAGTTGAC 59.354 55.000 0.08 0.00 0.00 3.18
1946 2204 0.245266 TGTATCGCCGCTCAAGTTGA 59.755 50.000 5.25 5.25 0.00 3.18
1991 2283 7.074653 ACTCAATTAGGACTGGTCACTTAAA 57.925 36.000 3.10 0.00 0.00 1.52
2086 2384 3.617540 TGACGTTTTGCATGACGAAAT 57.382 38.095 23.68 6.54 41.53 2.17
2178 2484 2.490509 TCTTTGCACCGATCTAAGTCGA 59.509 45.455 0.00 0.00 44.06 4.20
2179 2485 2.599082 GTCTTTGCACCGATCTAAGTCG 59.401 50.000 0.00 0.00 41.13 4.18
2180 2486 2.930682 GGTCTTTGCACCGATCTAAGTC 59.069 50.000 0.00 0.00 0.00 3.01
2181 2487 2.354805 GGGTCTTTGCACCGATCTAAGT 60.355 50.000 0.00 0.00 37.30 2.24
2182 2488 2.093447 AGGGTCTTTGCACCGATCTAAG 60.093 50.000 0.00 0.00 37.30 2.18
2183 2489 1.906574 AGGGTCTTTGCACCGATCTAA 59.093 47.619 0.00 0.00 37.30 2.10
2184 2490 1.480954 GAGGGTCTTTGCACCGATCTA 59.519 52.381 0.00 0.00 37.30 1.98
2185 2491 0.250513 GAGGGTCTTTGCACCGATCT 59.749 55.000 0.00 0.00 37.30 2.75
2186 2492 0.036388 TGAGGGTCTTTGCACCGATC 60.036 55.000 0.00 0.00 37.30 3.69
2194 2500 2.787473 TAGTGGCATGAGGGTCTTTG 57.213 50.000 0.00 0.00 0.00 2.77
2231 2799 4.357325 AGTCAGGATATATAGTGGCAGGG 58.643 47.826 0.00 0.00 0.00 4.45
2232 2800 6.427441 TCTAGTCAGGATATATAGTGGCAGG 58.573 44.000 0.00 0.00 0.00 4.85
2233 2801 7.116075 ACTCTAGTCAGGATATATAGTGGCAG 58.884 42.308 0.00 0.00 0.00 4.85
2234 2802 7.033782 ACTCTAGTCAGGATATATAGTGGCA 57.966 40.000 2.21 0.00 0.00 4.92
2235 2803 9.635404 ATTACTCTAGTCAGGATATATAGTGGC 57.365 37.037 0.00 0.00 0.00 5.01
2242 2810 9.664332 GGTCGTTATTACTCTAGTCAGGATATA 57.336 37.037 0.00 0.00 0.00 0.86
2243 2811 7.611079 GGGTCGTTATTACTCTAGTCAGGATAT 59.389 40.741 0.00 0.00 0.00 1.63
2244 2812 6.939163 GGGTCGTTATTACTCTAGTCAGGATA 59.061 42.308 0.00 0.00 0.00 2.59
2245 2813 5.769162 GGGTCGTTATTACTCTAGTCAGGAT 59.231 44.000 0.00 0.00 0.00 3.24
2246 2814 5.128919 GGGTCGTTATTACTCTAGTCAGGA 58.871 45.833 0.00 0.00 0.00 3.86
2247 2815 4.885907 TGGGTCGTTATTACTCTAGTCAGG 59.114 45.833 0.00 0.00 0.00 3.86
2250 2818 7.434602 GTGAAATGGGTCGTTATTACTCTAGTC 59.565 40.741 0.00 0.00 0.00 2.59
2251 2819 7.263496 GTGAAATGGGTCGTTATTACTCTAGT 58.737 38.462 0.00 0.00 0.00 2.57
2252 2820 6.700520 GGTGAAATGGGTCGTTATTACTCTAG 59.299 42.308 0.00 0.00 0.00 2.43
2253 2821 6.381994 AGGTGAAATGGGTCGTTATTACTCTA 59.618 38.462 0.00 0.00 0.00 2.43
2257 3079 5.413523 ACAAGGTGAAATGGGTCGTTATTAC 59.586 40.000 0.00 0.00 0.00 1.89
2263 3085 2.358322 AACAAGGTGAAATGGGTCGT 57.642 45.000 0.00 0.00 0.00 4.34
2274 3096 6.983474 AAAAAGAATGGTTCAAACAAGGTG 57.017 33.333 0.00 0.00 0.00 4.00
2295 3117 6.073167 CCATGCATGCATCAAACAAGTAAAAA 60.073 34.615 30.07 0.00 33.90 1.94
2296 3118 5.408909 CCATGCATGCATCAAACAAGTAAAA 59.591 36.000 30.07 0.00 33.90 1.52
2297 3119 4.930405 CCATGCATGCATCAAACAAGTAAA 59.070 37.500 30.07 0.00 33.90 2.01
2298 3120 4.021280 ACCATGCATGCATCAAACAAGTAA 60.021 37.500 30.07 0.00 33.90 2.24
2299 3121 3.510753 ACCATGCATGCATCAAACAAGTA 59.489 39.130 30.07 0.00 33.90 2.24
2839 3693 0.249489 CGACTTGGCCTAATCTCCGG 60.249 60.000 3.32 0.00 0.00 5.14
2853 3707 4.874396 GCCCTAATTAAACTACAGCGACTT 59.126 41.667 0.00 0.00 0.00 3.01
2897 4319 1.803334 TGGTTCCACGCACAGTTATC 58.197 50.000 0.00 0.00 0.00 1.75
2924 4346 0.179156 CCATGCACGTCAAATCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
2946 4368 3.660865 ACGTGCCTTAAATTCGAGAACT 58.339 40.909 0.00 0.00 0.00 3.01
2947 4369 3.430895 TGACGTGCCTTAAATTCGAGAAC 59.569 43.478 0.00 0.00 0.00 3.01
2952 4374 3.432252 AGACTTGACGTGCCTTAAATTCG 59.568 43.478 0.00 0.00 0.00 3.34
2963 4385 3.479866 GCGAAATAACGAGACTTGACGTG 60.480 47.826 0.00 0.00 42.43 4.49
3042 4464 1.600916 GTGGAAGCCTGGACACCAC 60.601 63.158 16.32 16.32 42.83 4.16
3104 4526 5.952064 GTCACGATATGCACGTTCTAAAAAG 59.048 40.000 0.00 0.00 42.07 2.27
3152 4577 2.592861 GGAGATCATGGGCGTGCC 60.593 66.667 1.16 1.16 0.00 5.01
3158 4583 4.680708 CGTATTTATCGGGGAGATCATGGG 60.681 50.000 0.00 0.00 40.66 4.00
3260 4685 9.722056 GATTCTAGCATGTCGTTTTATTTTCAT 57.278 29.630 0.00 0.00 0.00 2.57
3261 4686 8.726068 TGATTCTAGCATGTCGTTTTATTTTCA 58.274 29.630 0.00 0.00 0.00 2.69
3263 4688 9.722056 GATGATTCTAGCATGTCGTTTTATTTT 57.278 29.630 0.00 0.00 0.00 1.82
3287 4743 5.003804 AGGCAATAGTTTGTTTCGAGTGAT 58.996 37.500 0.00 0.00 35.17 3.06
3319 4775 9.961265 GCCAAAAGTTACTTTTCTTTATACAGT 57.039 29.630 18.82 0.00 41.05 3.55
3321 4777 9.959749 CAGCCAAAAGTTACTTTTCTTTATACA 57.040 29.630 18.82 0.00 41.05 2.29
3341 5032 3.443037 CACGTTCACAAATTTCAGCCAA 58.557 40.909 0.00 0.00 0.00 4.52
3359 5050 3.027170 GCTGCACGGTTGATCCACG 62.027 63.158 0.00 0.00 35.57 4.94
3610 5321 0.250124 TGTGCGTACCTTTGGTGGAG 60.250 55.000 0.00 0.00 36.19 3.86
3651 5364 2.336479 CACGATGTGTGTTACGTACGTC 59.664 50.000 26.53 12.39 43.88 4.34
3690 5403 1.614903 CGAGTTACACCCTGTGGTACA 59.385 52.381 0.00 0.00 45.57 2.90
3691 5404 1.615392 ACGAGTTACACCCTGTGGTAC 59.385 52.381 0.00 0.00 45.57 3.34
3694 5407 0.949105 GCACGAGTTACACCCTGTGG 60.949 60.000 0.00 0.00 37.94 4.17
3695 5408 0.033504 AGCACGAGTTACACCCTGTG 59.966 55.000 0.00 0.00 39.75 3.66
3728 5445 3.960998 GATCTGCACGTACGCGCG 61.961 66.667 30.96 30.96 42.83 6.86
3729 5446 3.617538 GGATCTGCACGTACGCGC 61.618 66.667 20.78 20.78 42.83 6.86
3730 5447 3.312504 CGGATCTGCACGTACGCG 61.313 66.667 16.72 3.53 44.93 6.01
4065 5782 5.635417 AACAAGGTACTAGGAACGTACTC 57.365 43.478 0.00 0.00 38.49 2.59
4078 5795 6.293698 TGGAAGTTAGGAAGAAACAAGGTAC 58.706 40.000 0.00 0.00 0.00 3.34
4613 6394 2.662596 CGCCACAGCCAGGACTTA 59.337 61.111 0.00 0.00 34.57 2.24
4955 6736 4.490606 TCCTCCGCCATGCCCCTA 62.491 66.667 0.00 0.00 0.00 3.53
5063 6844 0.601841 AAACGTACGCCTGAACCCAG 60.602 55.000 16.72 0.00 40.09 4.45
5085 8283 0.108945 GCGTTGTTCGGGTAGTAGCT 60.109 55.000 0.00 0.00 40.26 3.32
5153 8358 2.915659 TCGCCGTGTCCCTCTGTT 60.916 61.111 0.00 0.00 0.00 3.16
5432 8672 3.058160 GCCATCACCAGCGTTGCT 61.058 61.111 0.00 0.00 40.77 3.91
5462 8702 1.048724 CGGGGGAATGGCTAGACAGA 61.049 60.000 3.72 0.00 0.00 3.41
5468 8708 2.042741 TCGTCGGGGGAATGGCTA 60.043 61.111 0.00 0.00 0.00 3.93
5474 8714 1.379044 GTACTCCTCGTCGGGGGAA 60.379 63.158 12.24 0.00 37.70 3.97
5585 8833 3.056107 TCTTGTTCCTTCCGTCGATGATT 60.056 43.478 6.11 0.00 0.00 2.57
5618 8866 3.723348 GCGCCACACCGGTTCTTC 61.723 66.667 2.97 0.00 36.97 2.87
5728 8983 4.099419 AGGAAATCGTTTTTGTTGGAGCTT 59.901 37.500 0.00 0.00 0.00 3.74
5753 9008 4.744570 CGGACAACAAGTCTGCTAGATTA 58.255 43.478 0.00 0.00 45.99 1.75
5791 9046 6.071463 CGTGTGAAGTGTCAAGCTTATAAAC 58.929 40.000 0.00 0.00 34.87 2.01
5845 9107 9.376075 TCAGTCAAGAATGAGATCAGTAAAATC 57.624 33.333 0.00 0.00 35.88 2.17
5852 9114 6.396450 TCAGTTCAGTCAAGAATGAGATCAG 58.604 40.000 0.36 0.00 36.73 2.90
5949 9211 7.543868 TCATTTGTGGCGGTAATATTTTTCTTG 59.456 33.333 0.00 0.00 0.00 3.02
6010 9274 1.623311 TGATGGAGTCGAAGGCTTTCA 59.377 47.619 9.44 0.00 45.33 2.69
6042 9306 4.648626 CCCCATGATCCGCCGCAT 62.649 66.667 0.00 0.00 0.00 4.73
6049 9313 1.444933 TCCATACACCCCCATGATCC 58.555 55.000 0.00 0.00 0.00 3.36
6072 9336 2.279918 GTCACACCAGAACGCCGT 60.280 61.111 0.00 0.00 0.00 5.68
6097 9361 7.862372 GCTGTCAAAACATAGTGAAAATGAGAA 59.138 33.333 0.00 0.00 34.13 2.87
6106 9370 3.788227 AGGGCTGTCAAAACATAGTGA 57.212 42.857 0.00 0.00 34.13 3.41
6173 9437 7.499321 TGTGGTTGTTTCGACAAATAATACT 57.501 32.000 0.00 0.00 0.00 2.12
6175 9439 8.100508 TGATGTGGTTGTTTCGACAAATAATA 57.899 30.769 0.00 0.00 30.73 0.98
6187 9451 5.752955 GCTTACAATGTTGATGTGGTTGTTT 59.247 36.000 0.00 0.00 35.01 2.83
6201 9465 1.272480 GGGGAGGGTTGCTTACAATGT 60.272 52.381 0.00 0.00 38.27 2.71
6224 9488 5.799827 TTAATTCTTCTTTGTTGGGGGTG 57.200 39.130 0.00 0.00 0.00 4.61
6225 9489 6.816616 TTTTAATTCTTCTTTGTTGGGGGT 57.183 33.333 0.00 0.00 0.00 4.95
6283 9806 9.941664 GTTACTTTTATGCTGAGTACTCGTATA 57.058 33.333 17.85 16.58 0.00 1.47
6318 9844 2.913603 TCGGGAGGACCTCTAAAGAA 57.086 50.000 20.97 0.00 36.97 2.52
6335 9861 1.134694 GCAGCGGCTAGGTTTTTCG 59.865 57.895 0.26 0.00 36.96 3.46
6389 9916 4.135153 CTCCTCCTGACACCGGCG 62.135 72.222 0.00 0.00 0.00 6.46
6390 9917 2.997897 ACTCCTCCTGACACCGGC 60.998 66.667 0.00 0.00 0.00 6.13
6399 9926 2.125225 GGGTTCCCCACTCCTCCT 59.875 66.667 0.00 0.00 44.65 3.69
6417 9944 8.417106 TGTTATGAAGAACTCCACTCATAGATC 58.583 37.037 0.00 0.00 0.00 2.75
6482 10340 7.667575 ATGCTATCTCTAAGGAAGAAGACAA 57.332 36.000 0.00 0.00 32.46 3.18
6502 10360 9.035607 CGAAGATTACTTATTGTAGACAATGCT 57.964 33.333 16.42 3.24 45.34 3.79
6565 10423 7.363031 AGTAAGATCAGAAGGACCATACCTAA 58.637 38.462 0.00 0.00 39.62 2.69
6627 10485 4.467084 GACAATCCTGCCCGCGGA 62.467 66.667 30.73 6.25 34.52 5.54
6633 10491 1.369091 ATTGCGACGACAATCCTGCC 61.369 55.000 0.00 0.00 35.31 4.85
6635 10493 3.384668 AGATATTGCGACGACAATCCTG 58.615 45.455 16.91 0.00 40.64 3.86
6690 10548 0.895530 CTTTGGGAGCCGAGAGTACA 59.104 55.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.