Multiple sequence alignment - TraesCS7A01G245500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G245500 chr7A 100.000 5867 0 0 3562 9428 223530936 223525070 0.000000e+00 10835.0
1 TraesCS7A01G245500 chr7A 100.000 3143 0 0 1 3143 223534497 223531355 0.000000e+00 5805.0
2 TraesCS7A01G245500 chr7A 97.895 95 1 1 1508 1601 643550238 643550144 7.580000e-36 163.0
3 TraesCS7A01G245500 chr7A 100.000 28 0 0 4019 4046 32942241 32942268 1.700000e-02 52.8
4 TraesCS7A01G245500 chr7D 97.567 3823 70 11 3562 7367 211641130 211637314 0.000000e+00 6523.0
5 TraesCS7A01G245500 chr7D 95.622 1576 37 8 1599 3143 211642731 211641157 0.000000e+00 2499.0
6 TraesCS7A01G245500 chr7D 87.589 1547 90 44 5 1516 211644209 211642730 0.000000e+00 1700.0
7 TraesCS7A01G245500 chr7D 95.035 705 23 3 7370 8063 211637258 211636555 0.000000e+00 1098.0
8 TraesCS7A01G245500 chr7D 88.742 906 41 25 8567 9428 211635998 211635110 0.000000e+00 1051.0
9 TraesCS7A01G245500 chr7D 92.276 492 17 6 8066 8536 211636486 211635995 0.000000e+00 678.0
10 TraesCS7A01G245500 chr7D 88.703 239 24 3 549 784 282878109 282878347 1.200000e-73 289.0
11 TraesCS7A01G245500 chr7D 95.960 99 3 1 1509 1607 405186288 405186385 9.800000e-35 159.0
12 TraesCS7A01G245500 chr7D 85.593 118 17 0 326 443 632768903 632769020 3.570000e-24 124.0
13 TraesCS7A01G245500 chr7D 97.500 40 1 0 7678 7717 40415896 40415935 1.700000e-07 69.4
14 TraesCS7A01G245500 chr7D 96.970 33 0 1 7142 7174 513097752 513097783 5.000000e-03 54.7
15 TraesCS7A01G245500 chr7B 97.017 2179 50 9 5193 7361 189898420 189900593 0.000000e+00 3650.0
16 TraesCS7A01G245500 chr7B 94.136 1603 31 11 1599 3143 189894390 189895987 0.000000e+00 2381.0
17 TraesCS7A01G245500 chr7B 97.107 968 19 3 4198 5163 189896639 189897599 0.000000e+00 1624.0
18 TraesCS7A01G245500 chr7B 96.229 716 15 1 813 1516 189893676 189894391 0.000000e+00 1162.0
19 TraesCS7A01G245500 chr7B 88.474 911 41 19 8553 9428 189901702 189902583 0.000000e+00 1042.0
20 TraesCS7A01G245500 chr7B 93.075 491 17 7 8063 8536 189901229 189901719 0.000000e+00 702.0
21 TraesCS7A01G245500 chr7B 96.241 399 13 1 7665 8063 189900767 189901163 0.000000e+00 652.0
22 TraesCS7A01G245500 chr7B 92.835 321 19 1 3651 3971 189896322 189896638 6.670000e-126 462.0
23 TraesCS7A01G245500 chr7B 88.703 239 23 4 550 784 468145012 468145250 1.200000e-73 289.0
24 TraesCS7A01G245500 chr7B 92.053 151 4 4 7510 7652 189900635 189900785 1.240000e-48 206.0
25 TraesCS7A01G245500 chr7B 82.895 152 24 2 320 469 551498167 551498016 1.650000e-27 135.0
26 TraesCS7A01G245500 chr6A 83.056 2768 404 30 4075 6818 573848761 573846035 0.000000e+00 2453.0
27 TraesCS7A01G245500 chr4B 81.466 2784 466 37 4068 6818 187359285 187362051 0.000000e+00 2237.0
28 TraesCS7A01G245500 chr4B 89.540 239 21 4 553 787 545236840 545236602 5.530000e-77 300.0
29 TraesCS7A01G245500 chr4B 88.163 245 23 6 547 786 467910461 467910218 4.310000e-73 287.0
30 TraesCS7A01G245500 chr4B 95.918 98 1 3 1509 1604 286079578 286079482 1.270000e-33 156.0
31 TraesCS7A01G245500 chr4B 91.667 108 7 2 1496 1602 159918503 159918609 2.120000e-31 148.0
32 TraesCS7A01G245500 chr6B 81.131 2777 465 42 4072 6818 62113949 62116696 0.000000e+00 2170.0
33 TraesCS7A01G245500 chr6B 89.212 241 21 5 550 786 280999509 280999748 7.160000e-76 296.0
34 TraesCS7A01G245500 chr6B 80.793 328 56 6 6820 7141 62117225 62117551 5.650000e-62 250.0
35 TraesCS7A01G245500 chr6B 94.175 103 3 2 1503 1603 132894365 132894264 4.560000e-33 154.0
36 TraesCS7A01G245500 chr6B 82.759 145 25 0 326 470 348926569 348926713 7.680000e-26 130.0
37 TraesCS7A01G245500 chr6B 92.308 39 3 0 354 392 274455337 274455299 1.000000e-03 56.5
38 TraesCS7A01G245500 chr4A 78.972 2782 524 47 4072 6816 475390599 475387842 0.000000e+00 1840.0
39 TraesCS7A01G245500 chr4A 71.269 449 83 23 4116 4547 624022357 624021938 1.310000e-08 73.1
40 TraesCS7A01G245500 chr5A 79.066 2742 517 47 4072 6778 473243020 473245739 0.000000e+00 1831.0
41 TraesCS7A01G245500 chr5A 78.762 2778 509 54 4072 6811 685967519 685964785 0.000000e+00 1786.0
42 TraesCS7A01G245500 chr5A 88.477 243 23 5 548 786 632587417 632587658 1.200000e-73 289.0
43 TraesCS7A01G245500 chr1B 85.382 1676 208 23 5168 6818 570856042 570854379 0.000000e+00 1703.0
44 TraesCS7A01G245500 chr1B 81.300 1754 269 32 5095 6818 6854478 6852754 0.000000e+00 1367.0
45 TraesCS7A01G245500 chr1B 88.703 239 22 5 552 786 380471473 380471710 4.310000e-73 287.0
46 TraesCS7A01G245500 chr1A 79.082 2156 419 24 4066 6207 457821975 457824112 0.000000e+00 1454.0
47 TraesCS7A01G245500 chr1A 97.849 93 2 0 1512 1604 118503599 118503691 2.720000e-35 161.0
48 TraesCS7A01G245500 chr1A 84.173 139 18 4 1483 1618 4365045 4364908 2.140000e-26 132.0
49 TraesCS7A01G245500 chr5D 80.414 1690 291 32 5155 6816 487561661 487563338 0.000000e+00 1251.0
50 TraesCS7A01G245500 chr5D 100.000 30 0 0 4019 4048 288324729 288324700 1.000000e-03 56.5
51 TraesCS7A01G245500 chr3B 89.121 239 21 5 552 786 174904070 174904307 9.260000e-75 292.0
52 TraesCS7A01G245500 chr3B 97.826 92 2 0 1512 1603 756059734 756059643 9.800000e-35 159.0
53 TraesCS7A01G245500 chr4D 88.750 240 22 4 550 784 419445998 419446237 1.200000e-73 289.0
54 TraesCS7A01G245500 chr1D 96.939 98 3 0 1511 1608 426920588 426920685 2.110000e-36 165.0
55 TraesCS7A01G245500 chr2B 81.429 140 22 3 347 486 693361845 693361710 2.780000e-20 111.0
56 TraesCS7A01G245500 chr2A 90.000 50 5 0 7669 7718 750176179 750176228 2.200000e-06 65.8
57 TraesCS7A01G245500 chr6D 96.970 33 1 0 7137 7169 464120142 464120174 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G245500 chr7A 223525070 223534497 9427 True 8320.000000 10835 100.000000 1 9428 2 chr7A.!!$R2 9427
1 TraesCS7A01G245500 chr7D 211635110 211644209 9099 True 2258.166667 6523 92.805167 5 9428 6 chr7D.!!$R1 9423
2 TraesCS7A01G245500 chr7B 189893676 189902583 8907 False 1320.111111 3650 94.129667 813 9428 9 chr7B.!!$F2 8615
3 TraesCS7A01G245500 chr6A 573846035 573848761 2726 True 2453.000000 2453 83.056000 4075 6818 1 chr6A.!!$R1 2743
4 TraesCS7A01G245500 chr4B 187359285 187362051 2766 False 2237.000000 2237 81.466000 4068 6818 1 chr4B.!!$F2 2750
5 TraesCS7A01G245500 chr6B 62113949 62117551 3602 False 1210.000000 2170 80.962000 4072 7141 2 chr6B.!!$F3 3069
6 TraesCS7A01G245500 chr4A 475387842 475390599 2757 True 1840.000000 1840 78.972000 4072 6816 1 chr4A.!!$R1 2744
7 TraesCS7A01G245500 chr5A 473243020 473245739 2719 False 1831.000000 1831 79.066000 4072 6778 1 chr5A.!!$F1 2706
8 TraesCS7A01G245500 chr5A 685964785 685967519 2734 True 1786.000000 1786 78.762000 4072 6811 1 chr5A.!!$R1 2739
9 TraesCS7A01G245500 chr1B 570854379 570856042 1663 True 1703.000000 1703 85.382000 5168 6818 1 chr1B.!!$R2 1650
10 TraesCS7A01G245500 chr1B 6852754 6854478 1724 True 1367.000000 1367 81.300000 5095 6818 1 chr1B.!!$R1 1723
11 TraesCS7A01G245500 chr1A 457821975 457824112 2137 False 1454.000000 1454 79.082000 4066 6207 1 chr1A.!!$F2 2141
12 TraesCS7A01G245500 chr5D 487561661 487563338 1677 False 1251.000000 1251 80.414000 5155 6816 1 chr5D.!!$F1 1661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 954 0.368907 CCGATACCGTTGCAGTTTCG 59.631 55.000 9.44 9.44 38.09 3.46 F
1609 1648 1.068741 CGGAGGGAGTAGTATGTTGGC 59.931 57.143 0.00 0.00 0.00 4.52 F
1793 1832 1.152902 TGCAAGGACTTGTGCAGCT 60.153 52.632 13.08 0.00 45.52 4.24 F
3692 4008 0.107459 GGGTCTGGCCTTGTGAGATC 60.107 60.000 3.32 0.00 37.43 2.75 F
4517 4844 0.399833 TGCCACACCACAAGCATCTA 59.600 50.000 0.00 0.00 0.00 1.98 F
5531 6656 0.327924 TGTGGGGTTGGCATGTAGAG 59.672 55.000 0.00 0.00 0.00 2.43 F
6759 7904 0.457035 TGTATAGTTCCACCCGTCGC 59.543 55.000 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 1832 0.322816 GATGGAGGCCAACTGCTGAA 60.323 55.000 5.01 0.0 36.95 3.02 R
2528 2594 4.241590 TGTCATTTTGGACACAGATTGC 57.758 40.909 0.00 0.0 42.56 3.56 R
3784 4100 0.039618 TTCCTGCCACCATTTCCTCC 59.960 55.000 0.00 0.0 0.00 4.30 R
4916 5245 1.071228 TGATTCGATGAGGATGGCAGG 59.929 52.381 0.00 0.0 0.00 4.85 R
6458 7598 0.613260 ATGAGCAAAGCCTACGACCA 59.387 50.000 0.00 0.0 0.00 4.02 R
7219 8905 0.106217 ACCTCACCCCAAAACCAGTG 60.106 55.000 0.00 0.0 0.00 3.66 R
8543 10378 0.035439 GAAGATCCAGACCCCGCAAA 60.035 55.000 0.00 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.002257 ATGTGCATGTGCCTCCGAA 60.002 52.632 2.07 0.00 41.18 4.30
75 76 6.455360 AAAGAAGCAAATTTGTGTCTCTCA 57.545 33.333 19.03 0.00 0.00 3.27
129 130 2.029365 GTGGCTCTCGCGAAAGTTAATC 59.971 50.000 11.71 0.00 36.88 1.75
130 131 2.094182 TGGCTCTCGCGAAAGTTAATCT 60.094 45.455 11.71 0.00 36.88 2.40
147 148 0.976641 TCTGTGCCTCCACGAGAAAT 59.023 50.000 0.00 0.00 45.04 2.17
152 153 4.331968 TGTGCCTCCACGAGAAATAAAAT 58.668 39.130 0.00 0.00 45.04 1.82
154 155 5.095490 GTGCCTCCACGAGAAATAAAATTG 58.905 41.667 0.00 0.00 31.34 2.32
163 164 6.863126 CACGAGAAATAAAATTGTGCCTCTTT 59.137 34.615 0.00 0.00 0.00 2.52
215 218 5.940470 GGCACTTTTTCTCTCCAGAATCTAA 59.060 40.000 0.00 0.00 38.50 2.10
217 220 7.301789 GCACTTTTTCTCTCCAGAATCTAAAC 58.698 38.462 0.00 0.00 38.50 2.01
227 230 4.076394 CCAGAATCTAAACAAAACCGGGA 58.924 43.478 6.32 0.00 0.00 5.14
306 309 5.470845 AAATACAAAATCTCGAGGAAGCG 57.529 39.130 13.56 1.56 0.00 4.68
332 335 4.811555 GCACCGTGCATAAGATAATTGA 57.188 40.909 18.79 0.00 44.26 2.57
341 344 7.806487 CGTGCATAAGATAATTGATTTGATGCT 59.194 33.333 0.00 0.00 38.34 3.79
356 359 1.985684 GATGCTAAAAGTTTGCGTGCC 59.014 47.619 0.00 0.00 0.00 5.01
357 360 0.741326 TGCTAAAAGTTTGCGTGCCA 59.259 45.000 0.00 0.00 0.00 4.92
358 361 1.135139 TGCTAAAAGTTTGCGTGCCAA 59.865 42.857 0.00 0.00 0.00 4.52
359 362 2.197577 GCTAAAAGTTTGCGTGCCAAA 58.802 42.857 0.00 0.00 40.97 3.28
360 363 2.799978 GCTAAAAGTTTGCGTGCCAAAT 59.200 40.909 0.00 0.00 44.61 2.32
361 364 3.247411 GCTAAAAGTTTGCGTGCCAAATT 59.753 39.130 0.00 0.00 44.61 1.82
362 365 4.260579 GCTAAAAGTTTGCGTGCCAAATTT 60.261 37.500 0.00 0.00 44.61 1.82
364 367 3.672028 AAGTTTGCGTGCCAAATTTTG 57.328 38.095 1.99 1.99 44.61 2.44
433 436 1.895131 GGCAATCTCACCAATGGTTGT 59.105 47.619 0.16 0.00 31.02 3.32
443 446 6.493115 TCTCACCAATGGTTGTCAAATATTGT 59.507 34.615 0.16 7.02 31.02 2.71
465 483 6.783162 TGTCAACTTTTGATTTTGCCAAATG 58.217 32.000 0.00 0.00 42.47 2.32
485 503 7.251994 CAAATGTTGGGAATGCAAAATATTGG 58.748 34.615 0.00 0.00 37.02 3.16
526 544 2.358737 GTGGACTCACGCAAGGGG 60.359 66.667 0.00 0.00 44.90 4.79
544 563 0.775542 GGGTCCCCTTGGTTAGTTGT 59.224 55.000 0.00 0.00 0.00 3.32
546 565 2.511659 GGTCCCCTTGGTTAGTTGTTC 58.488 52.381 0.00 0.00 0.00 3.18
547 566 2.107726 GGTCCCCTTGGTTAGTTGTTCT 59.892 50.000 0.00 0.00 0.00 3.01
548 567 3.436035 GGTCCCCTTGGTTAGTTGTTCTT 60.436 47.826 0.00 0.00 0.00 2.52
573 592 4.718961 AGGGCATGTACAATGGTTCTATC 58.281 43.478 0.00 0.00 0.00 2.08
578 597 7.217200 GGCATGTACAATGGTTCTATCTTAGA 58.783 38.462 0.00 0.00 0.00 2.10
586 605 7.615365 ACAATGGTTCTATCTTAGAAATGCCAA 59.385 33.333 8.36 0.00 45.56 4.52
587 606 8.469200 CAATGGTTCTATCTTAGAAATGCCAAA 58.531 33.333 8.36 0.00 45.56 3.28
591 610 9.561069 GGTTCTATCTTAGAAATGCCAAATAGA 57.439 33.333 0.00 0.00 45.56 1.98
616 635 8.421249 AATAAATAGTGAGATGGAGGAGAGAG 57.579 38.462 0.00 0.00 0.00 3.20
618 637 5.661503 ATAGTGAGATGGAGGAGAGAGAA 57.338 43.478 0.00 0.00 0.00 2.87
630 649 7.790027 TGGAGGAGAGAGAAATCATAAGAAAG 58.210 38.462 0.00 0.00 0.00 2.62
631 650 7.621285 TGGAGGAGAGAGAAATCATAAGAAAGA 59.379 37.037 0.00 0.00 0.00 2.52
632 651 7.926018 GGAGGAGAGAGAAATCATAAGAAAGAC 59.074 40.741 0.00 0.00 0.00 3.01
633 652 8.608185 AGGAGAGAGAAATCATAAGAAAGACT 57.392 34.615 0.00 0.00 0.00 3.24
635 654 9.097257 GGAGAGAGAAATCATAAGAAAGACTTG 57.903 37.037 0.00 0.00 39.38 3.16
636 655 9.651913 GAGAGAGAAATCATAAGAAAGACTTGT 57.348 33.333 0.00 0.00 39.38 3.16
637 656 9.651913 AGAGAGAAATCATAAGAAAGACTTGTC 57.348 33.333 0.00 0.00 39.38 3.18
638 657 9.651913 GAGAGAAATCATAAGAAAGACTTGTCT 57.348 33.333 0.00 0.00 39.38 3.41
652 671 9.670719 GAAAGACTTGTCTTCTTTTATTCAAGG 57.329 33.333 15.27 0.00 42.21 3.61
653 672 7.208225 AGACTTGTCTTCTTTTATTCAAGGC 57.792 36.000 0.00 0.00 40.08 4.35
654 673 7.001073 AGACTTGTCTTCTTTTATTCAAGGCT 58.999 34.615 5.41 5.41 43.54 4.58
655 674 8.157476 AGACTTGTCTTCTTTTATTCAAGGCTA 58.843 33.333 8.97 0.00 45.51 3.93
656 675 8.329203 ACTTGTCTTCTTTTATTCAAGGCTAG 57.671 34.615 0.00 0.00 37.27 3.42
657 676 6.743575 TGTCTTCTTTTATTCAAGGCTAGC 57.256 37.500 6.04 6.04 0.00 3.42
658 677 6.476378 TGTCTTCTTTTATTCAAGGCTAGCT 58.524 36.000 15.72 0.00 0.00 3.32
659 678 7.620880 TGTCTTCTTTTATTCAAGGCTAGCTA 58.379 34.615 15.72 0.00 0.00 3.32
660 679 8.267894 TGTCTTCTTTTATTCAAGGCTAGCTAT 58.732 33.333 15.72 0.30 0.00 2.97
661 680 9.114952 GTCTTCTTTTATTCAAGGCTAGCTATT 57.885 33.333 15.72 7.29 0.00 1.73
662 681 9.113838 TCTTCTTTTATTCAAGGCTAGCTATTG 57.886 33.333 15.72 18.69 0.00 1.90
663 682 9.113838 CTTCTTTTATTCAAGGCTAGCTATTGA 57.886 33.333 23.38 23.38 0.00 2.57
664 683 9.632638 TTCTTTTATTCAAGGCTAGCTATTGAT 57.367 29.630 25.95 19.94 33.26 2.57
665 684 9.060347 TCTTTTATTCAAGGCTAGCTATTGATG 57.940 33.333 25.95 13.19 33.26 3.07
666 685 8.978874 TTTTATTCAAGGCTAGCTATTGATGA 57.021 30.769 25.95 17.47 33.26 2.92
667 686 9.578576 TTTTATTCAAGGCTAGCTATTGATGAT 57.421 29.630 25.95 21.17 33.26 2.45
668 687 8.783833 TTATTCAAGGCTAGCTATTGATGATC 57.216 34.615 25.95 4.84 33.26 2.92
693 712 6.051074 TCTTAGCACAATATGTCTCACCATG 58.949 40.000 0.00 0.00 0.00 3.66
701 720 8.729756 CACAATATGTCTCACCATGTTTTTAGA 58.270 33.333 0.00 0.00 0.00 2.10
711 730 7.985476 TCACCATGTTTTTAGAAATAGCTAGC 58.015 34.615 6.62 6.62 0.00 3.42
730 749 7.610865 AGCTAGCTATTGAAGATAAGGCTAAG 58.389 38.462 17.69 0.00 28.83 2.18
795 816 9.791820 TTACATGCAAGACTTTATCAATCATTG 57.208 29.630 0.00 0.00 0.00 2.82
796 817 7.833786 ACATGCAAGACTTTATCAATCATTGT 58.166 30.769 0.00 0.00 0.00 2.71
797 818 8.959548 ACATGCAAGACTTTATCAATCATTGTA 58.040 29.630 0.00 0.00 0.00 2.41
798 819 9.229784 CATGCAAGACTTTATCAATCATTGTAC 57.770 33.333 0.00 0.00 0.00 2.90
799 820 8.334263 TGCAAGACTTTATCAATCATTGTACA 57.666 30.769 0.00 0.00 0.00 2.90
800 821 8.959548 TGCAAGACTTTATCAATCATTGTACAT 58.040 29.630 0.00 0.00 0.00 2.29
804 825 9.113838 AGACTTTATCAATCATTGTACATGTCC 57.886 33.333 0.00 0.00 0.00 4.02
805 826 9.113838 GACTTTATCAATCATTGTACATGTCCT 57.886 33.333 0.00 0.00 0.00 3.85
806 827 9.113838 ACTTTATCAATCATTGTACATGTCCTC 57.886 33.333 0.00 0.00 0.00 3.71
807 828 9.112725 CTTTATCAATCATTGTACATGTCCTCA 57.887 33.333 0.00 0.00 0.00 3.86
808 829 8.667076 TTATCAATCATTGTACATGTCCTCAG 57.333 34.615 0.00 0.00 0.00 3.35
809 830 6.298441 TCAATCATTGTACATGTCCTCAGA 57.702 37.500 0.00 0.00 0.00 3.27
810 831 6.710278 TCAATCATTGTACATGTCCTCAGAA 58.290 36.000 0.00 0.00 0.00 3.02
811 832 7.167535 TCAATCATTGTACATGTCCTCAGAAA 58.832 34.615 0.00 0.00 0.00 2.52
920 941 1.739067 GCCCATGATAAGGCCGATAC 58.261 55.000 0.00 0.00 43.76 2.24
933 954 0.368907 CCGATACCGTTGCAGTTTCG 59.631 55.000 9.44 9.44 38.09 3.46
999 1032 1.671379 GCCGTCCAGGGAGACAAAC 60.671 63.158 0.00 0.00 41.48 2.93
1317 1350 1.285078 GCTGGTTTCCCCTCTGGTAAT 59.715 52.381 0.00 0.00 34.77 1.89
1393 1432 2.159014 TGAAGGTGTAGCGTGTCAACTT 60.159 45.455 6.02 6.02 43.11 2.66
1400 1439 4.505191 GTGTAGCGTGTCAACTTTTGTAGA 59.495 41.667 0.00 0.00 0.00 2.59
1430 1469 3.568007 TGTGAGTCCAAAATTACAGGCAC 59.432 43.478 0.00 0.00 0.00 5.01
1519 1558 9.702494 AACAAACATGTAACTTAGTACTACTCC 57.298 33.333 0.91 0.00 0.00 3.85
1520 1559 8.309656 ACAAACATGTAACTTAGTACTACTCCC 58.690 37.037 0.91 0.00 0.00 4.30
1521 1560 8.529476 CAAACATGTAACTTAGTACTACTCCCT 58.471 37.037 0.91 0.00 0.00 4.20
1522 1561 7.878547 ACATGTAACTTAGTACTACTCCCTC 57.121 40.000 0.91 0.00 0.00 4.30
1523 1562 6.832900 ACATGTAACTTAGTACTACTCCCTCC 59.167 42.308 0.91 0.00 0.00 4.30
1524 1563 5.431765 TGTAACTTAGTACTACTCCCTCCG 58.568 45.833 0.91 0.00 0.00 4.63
1525 1564 4.582973 AACTTAGTACTACTCCCTCCGT 57.417 45.455 0.91 0.00 0.00 4.69
1526 1565 4.582973 ACTTAGTACTACTCCCTCCGTT 57.417 45.455 0.91 0.00 0.00 4.44
1527 1566 4.522114 ACTTAGTACTACTCCCTCCGTTC 58.478 47.826 0.91 0.00 0.00 3.95
1528 1567 2.433662 AGTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
1529 1568 1.637553 AGTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
1530 1569 2.042162 AGTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
1531 1570 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1532 1571 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1533 1572 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1534 1573 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1535 1574 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1536 1575 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1537 1576 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1538 1577 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1539 1578 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1540 1579 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1541 1580 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1542 1581 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1543 1582 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1544 1583 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1545 1584 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1546 1585 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1547 1586 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1548 1587 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1549 1588 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
1590 1629 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
1591 1630 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
1592 1631 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
1593 1632 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
1594 1633 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
1595 1634 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
1596 1635 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
1597 1636 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
1598 1637 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
1599 1638 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
1609 1648 1.068741 CGGAGGGAGTAGTATGTTGGC 59.931 57.143 0.00 0.00 0.00 4.52
1696 1735 2.613725 GCACACCATGTCAGTGAGATGA 60.614 50.000 27.21 0.00 35.69 2.92
1707 1746 5.012458 TGTCAGTGAGATGATTCTTTGAGGT 59.988 40.000 0.00 0.00 30.30 3.85
1793 1832 1.152902 TGCAAGGACTTGTGCAGCT 60.153 52.632 13.08 0.00 45.52 4.24
1945 2010 2.690786 CAGCCATTGGGTTTTCATGTG 58.309 47.619 4.22 0.00 36.17 3.21
2084 2149 2.424601 CGGTGCATTCATGACCAATCTT 59.575 45.455 0.00 0.00 32.12 2.40
2119 2184 5.050490 GTCTTTGAAGTGTAGCAAGTCTCA 58.950 41.667 0.00 0.00 0.00 3.27
2221 2286 9.722056 GAAGCAGGTACAATAGTTTATCATTTG 57.278 33.333 0.00 0.00 0.00 2.32
2528 2594 7.908193 AAACAGTTTAAAAGATGTTAGCACG 57.092 32.000 12.49 0.00 34.92 5.34
2852 2948 2.673775 TGGGCAAGATCAACCTCAAA 57.326 45.000 0.00 0.00 0.00 2.69
3081 3178 0.968901 CACTCCAGCCATGTGCCATT 60.969 55.000 2.95 0.00 42.71 3.16
3688 4004 1.852157 ATGGGGTCTGGCCTTGTGA 60.852 57.895 3.32 0.00 37.43 3.58
3692 4008 0.107459 GGGTCTGGCCTTGTGAGATC 60.107 60.000 3.32 0.00 37.43 2.75
3700 4016 2.439507 GGCCTTGTGAGATCTCCCATAA 59.560 50.000 20.03 6.82 0.00 1.90
3784 4100 2.117156 CAGGAAAGGATGCAGGCGG 61.117 63.158 0.00 0.00 0.00 6.13
3786 4102 2.272146 GAAAGGATGCAGGCGGGA 59.728 61.111 0.00 0.00 0.00 5.14
3860 4176 2.595095 CGGGCAGCCATTAAGGGA 59.405 61.111 15.19 0.00 38.09 4.20
3915 4231 3.290710 CAGAAGAGAGGGGAAGAGAGAG 58.709 54.545 0.00 0.00 0.00 3.20
3959 4275 5.048083 CCTCCAAAAATTTGTCGATTGAGGA 60.048 40.000 15.65 0.00 39.44 3.71
4009 4325 8.015658 GGTATTTTAGCAGTTATTTGCCTATCG 58.984 37.037 0.00 0.00 45.18 2.92
4070 4386 7.014326 CAGATACAACCTTAGGCACTATGTCTA 59.986 40.741 0.00 0.00 42.38 2.59
4415 4735 4.621747 GCCTAGCTGAGTGACTGTGTTTAT 60.622 45.833 0.00 0.00 0.00 1.40
4471 4798 2.363680 GCATCCGAGAATCTCTCCAGAA 59.636 50.000 8.77 0.00 40.34 3.02
4472 4799 3.006752 GCATCCGAGAATCTCTCCAGAAT 59.993 47.826 8.77 0.00 40.34 2.40
4473 4800 4.808558 CATCCGAGAATCTCTCCAGAATC 58.191 47.826 8.77 0.00 40.34 2.52
4474 4801 3.226777 TCCGAGAATCTCTCCAGAATCC 58.773 50.000 8.77 0.00 40.34 3.01
4475 4802 2.961741 CCGAGAATCTCTCCAGAATCCA 59.038 50.000 8.77 0.00 40.34 3.41
4476 4803 3.005684 CCGAGAATCTCTCCAGAATCCAG 59.994 52.174 8.77 0.00 40.34 3.86
4477 4804 3.888323 CGAGAATCTCTCCAGAATCCAGA 59.112 47.826 8.77 0.00 40.34 3.86
4482 4809 7.075148 AGAATCTCTCCAGAATCCAGATTACT 58.925 38.462 0.00 0.00 34.61 2.24
4517 4844 0.399833 TGCCACACCACAAGCATCTA 59.600 50.000 0.00 0.00 0.00 1.98
4916 5245 7.593644 ACCTTCTTACATTTAATGAAACAACGC 59.406 33.333 12.28 0.00 0.00 4.84
4936 5265 1.071228 CCTGCCATCCTCATCGAATCA 59.929 52.381 0.00 0.00 0.00 2.57
5333 6455 2.408271 TGTGGCAGGATCAATCAGTC 57.592 50.000 0.00 0.00 0.00 3.51
5362 6485 1.808411 AGTTACAACATGTCTGCCCG 58.192 50.000 0.00 0.00 0.00 6.13
5531 6656 0.327924 TGTGGGGTTGGCATGTAGAG 59.672 55.000 0.00 0.00 0.00 2.43
5536 6661 2.084546 GGGTTGGCATGTAGAGTTGAC 58.915 52.381 0.00 0.00 0.00 3.18
5616 6743 1.001641 GCCTCCATGCCTGTCTTGT 60.002 57.895 0.00 0.00 0.00 3.16
5856 6985 6.209589 GCTTTTACAAGGATTTCTTTCCCTCT 59.790 38.462 0.00 0.00 36.35 3.69
5886 7015 3.763057 GGAGTTTTTCCTTCCAGCCTTA 58.237 45.455 0.00 0.00 43.16 2.69
6381 7519 2.079158 TGGTACCTAACAGTCGAGACG 58.921 52.381 14.36 0.00 36.20 4.18
6566 7706 9.565090 GCTCATATGCCAATAGAATATTATCCA 57.435 33.333 0.00 0.00 0.00 3.41
6759 7904 0.457035 TGTATAGTTCCACCCGTCGC 59.543 55.000 0.00 0.00 0.00 5.19
6799 7948 3.119602 TCCGAAGAACCTCTTGTATGACG 60.120 47.826 0.00 0.00 36.73 4.35
6842 8518 2.751806 CCAGTCTTTCAAATCTCCTGCC 59.248 50.000 0.00 0.00 0.00 4.85
7034 8713 2.391926 TAGGCCTATGGTCCGAATGA 57.608 50.000 8.91 0.00 0.00 2.57
7078 8758 7.451566 ACTTAAAGGTTAAGGAATCTTGCACAT 59.548 33.333 11.39 0.00 36.09 3.21
7177 8858 3.268023 AGTACCACAATTGAGGCTAGC 57.732 47.619 20.41 6.04 0.00 3.42
7367 9053 3.323403 CCTCTCTCTCTCTCTCTCTCTCC 59.677 56.522 0.00 0.00 0.00 3.71
7378 9117 4.075793 TCTCTCCCCAGTCCCCCG 62.076 72.222 0.00 0.00 0.00 5.73
7495 9234 3.952508 ACGTCATGCAGGCCACCA 61.953 61.111 5.01 0.54 0.00 4.17
7558 9297 0.394216 TACGTAGCAAGCTCCGGGTA 60.394 55.000 11.61 2.06 29.50 3.69
7559 9298 1.041447 ACGTAGCAAGCTCCGGGTAT 61.041 55.000 11.61 0.00 29.50 2.73
7759 9509 7.453393 CCATGTATGTTTATCTCCCACATAGT 58.547 38.462 0.00 0.00 34.73 2.12
7760 9510 7.388776 CCATGTATGTTTATCTCCCACATAGTG 59.611 40.741 0.00 0.00 34.73 2.74
7761 9511 7.669089 TGTATGTTTATCTCCCACATAGTGA 57.331 36.000 0.00 0.00 34.73 3.41
7789 9539 1.075601 ACCCACAGTGGTCCATCATT 58.924 50.000 18.82 0.00 35.17 2.57
7795 9545 4.577693 CCACAGTGGTCCATCATTATCAAG 59.422 45.833 11.99 0.00 31.35 3.02
7809 9559 6.009589 TCATTATCAAGGAAAAAGCCAGTGA 58.990 36.000 0.00 0.00 0.00 3.41
8032 9782 2.158460 ACCCCTTGAAGTTCTTTCTGGG 60.158 50.000 4.17 9.19 43.55 4.45
8082 9898 5.391843 CGGACAGATCAATGCAATGTAAACA 60.392 40.000 0.85 0.00 0.00 2.83
8084 9900 7.467131 CGGACAGATCAATGCAATGTAAACATA 60.467 37.037 0.85 0.00 35.10 2.29
8310 10126 1.536943 GCCTGAACCTCTCGGTGAGT 61.537 60.000 6.36 0.00 44.73 3.41
8323 10139 1.014564 GGTGAGTGTTGGAGTAGCGC 61.015 60.000 0.00 0.00 0.00 5.92
8418 10234 2.703007 ACTGTTCCCAGCAGAGGATATC 59.297 50.000 0.00 0.00 42.81 1.63
8430 10246 7.392418 CAGCAGAGGATATCTATGGATGAAAA 58.608 38.462 1.10 0.00 36.10 2.29
8431 10247 8.047911 CAGCAGAGGATATCTATGGATGAAAAT 58.952 37.037 1.10 0.00 36.10 1.82
8522 10357 8.253113 CCTGGTAATTTTGTTAGCATTTGATCT 58.747 33.333 0.00 0.00 32.77 2.75
8523 10358 8.984891 TGGTAATTTTGTTAGCATTTGATCTG 57.015 30.769 0.00 0.00 0.00 2.90
8524 10359 8.034215 TGGTAATTTTGTTAGCATTTGATCTGG 58.966 33.333 0.00 0.00 0.00 3.86
8525 10360 8.250332 GGTAATTTTGTTAGCATTTGATCTGGA 58.750 33.333 0.00 0.00 0.00 3.86
8526 10361 9.807649 GTAATTTTGTTAGCATTTGATCTGGAT 57.192 29.630 0.00 0.00 0.00 3.41
8528 10363 9.729281 AATTTTGTTAGCATTTGATCTGGATTT 57.271 25.926 0.00 0.00 0.00 2.17
8529 10364 9.729281 ATTTTGTTAGCATTTGATCTGGATTTT 57.271 25.926 0.00 0.00 0.00 1.82
8530 10365 9.558396 TTTTGTTAGCATTTGATCTGGATTTTT 57.442 25.926 0.00 0.00 0.00 1.94
8559 10394 2.955609 TTTTTGCGGGGTCTGGATC 58.044 52.632 0.00 0.00 0.00 3.36
8564 10399 0.909610 TGCGGGGTCTGGATCTTCTT 60.910 55.000 0.00 0.00 0.00 2.52
8565 10400 0.179070 GCGGGGTCTGGATCTTCTTC 60.179 60.000 0.00 0.00 0.00 2.87
8577 10412 4.022589 TGGATCTTCTTCTTTTGCTTGCAG 60.023 41.667 0.00 0.00 0.00 4.41
8594 10429 3.023119 TGCAGTCTCAACCAAAATGTGT 58.977 40.909 0.00 0.00 0.00 3.72
8603 10438 5.197451 TCAACCAAAATGTGTACTGGACTT 58.803 37.500 3.75 0.00 32.97 3.01
8666 10503 7.824779 GGAGGTAATTAGACATGACAAGAAACT 59.175 37.037 0.00 0.00 0.00 2.66
8675 10512 4.202441 CATGACAAGAAACTAGATGGGGG 58.798 47.826 0.00 0.00 0.00 5.40
8718 10555 2.103373 CTGAGCTGCCTACTTGTCCTA 58.897 52.381 0.00 0.00 0.00 2.94
8725 10562 4.589908 CTGCCTACTTGTCCTAAACCATT 58.410 43.478 0.00 0.00 0.00 3.16
8730 10567 6.120220 CCTACTTGTCCTAAACCATTAAGGG 58.880 44.000 4.20 4.20 43.89 3.95
8749 10586 5.559148 AGGGGTTGTTTAAATTTGCATGA 57.441 34.783 0.00 0.00 0.00 3.07
8750 10587 5.304778 AGGGGTTGTTTAAATTTGCATGAC 58.695 37.500 0.00 0.00 0.00 3.06
8752 10589 4.376920 GGGTTGTTTAAATTTGCATGACGC 60.377 41.667 0.00 0.00 42.89 5.19
8754 10591 5.050431 GGTTGTTTAAATTTGCATGACGCTT 60.050 36.000 0.00 0.00 43.06 4.68
8755 10592 6.418141 GTTGTTTAAATTTGCATGACGCTTT 58.582 32.000 0.00 0.00 43.06 3.51
8756 10593 7.306866 GGTTGTTTAAATTTGCATGACGCTTTA 60.307 33.333 0.00 0.00 43.06 1.85
8758 10595 7.948137 TGTTTAAATTTGCATGACGCTTTATC 58.052 30.769 0.00 0.00 43.06 1.75
8762 10599 5.762825 ATTTGCATGACGCTTTATCATCT 57.237 34.783 0.00 0.00 43.06 2.90
8763 10600 5.565592 TTTGCATGACGCTTTATCATCTT 57.434 34.783 0.00 0.00 43.06 2.40
8764 10601 4.541085 TGCATGACGCTTTATCATCTTG 57.459 40.909 0.00 0.00 43.06 3.02
8765 10602 3.313249 TGCATGACGCTTTATCATCTTGG 59.687 43.478 0.00 0.00 43.06 3.61
8766 10603 3.851105 GCATGACGCTTTATCATCTTGGC 60.851 47.826 0.00 0.00 34.49 4.52
8769 10606 2.373735 CGCTTTATCATCTTGGCGTG 57.626 50.000 0.00 0.00 38.20 5.34
8770 10607 1.003545 CGCTTTATCATCTTGGCGTGG 60.004 52.381 0.00 0.00 38.20 4.94
8857 10714 0.598419 CTGAGCAGCTGTCACGTTCA 60.598 55.000 16.64 8.86 0.00 3.18
9028 10886 0.535780 TGCTGCCACAGTGAAAGGAG 60.536 55.000 0.62 0.00 33.43 3.69
9106 10965 5.564651 GCATCCGAAAATCAAGAACTCCAAA 60.565 40.000 0.00 0.00 0.00 3.28
9228 11098 1.294041 TGGCACCCATGACCAATCTA 58.706 50.000 0.00 0.00 29.67 1.98
9252 11122 2.416547 ACTGCGAATGTGCAATGACTAC 59.583 45.455 0.00 0.00 45.74 2.73
9291 11161 6.059787 AGAATCTCAGGCTGTCATTAAAGT 57.940 37.500 15.27 0.00 0.00 2.66
9337 11207 1.293963 GAAACCGTACCAGGCGAACC 61.294 60.000 0.00 0.00 33.69 3.62
9378 11255 4.690719 CCTACCCGCGTGTTGCCA 62.691 66.667 4.92 0.00 42.08 4.92
9379 11256 3.419759 CTACCCGCGTGTTGCCAC 61.420 66.667 4.92 0.00 42.08 5.01
9380 11257 3.876589 CTACCCGCGTGTTGCCACT 62.877 63.158 4.92 0.00 42.08 4.00
9383 11260 3.276091 CCGCGTGTTGCCACTGAA 61.276 61.111 4.92 0.00 42.08 3.02
9384 11261 2.052237 CGCGTGTTGCCACTGAAC 60.052 61.111 0.00 0.00 42.08 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.557920 AGTTGTGCCTCTCAGAAAGG 57.442 50.000 0.00 0.00 36.95 3.11
6 7 4.890158 TTCATAAGTTGTGCCTCTCAGA 57.110 40.909 0.00 0.00 0.00 3.27
7 8 4.142730 GCTTTCATAAGTTGTGCCTCTCAG 60.143 45.833 0.00 0.00 33.74 3.35
8 9 3.753272 GCTTTCATAAGTTGTGCCTCTCA 59.247 43.478 0.00 0.00 33.74 3.27
9 10 3.753272 TGCTTTCATAAGTTGTGCCTCTC 59.247 43.478 0.00 0.00 33.74 3.20
41 42 2.859992 GCTTCTTTCGGAGGCACAT 58.140 52.632 0.00 0.00 44.96 3.21
45 46 2.989166 CAAATTTGCTTCTTTCGGAGGC 59.011 45.455 5.01 0.00 45.68 4.70
46 47 3.983344 CACAAATTTGCTTCTTTCGGAGG 59.017 43.478 18.12 0.00 0.00 4.30
47 48 4.610945 ACACAAATTTGCTTCTTTCGGAG 58.389 39.130 18.12 0.00 0.00 4.63
48 49 4.338118 AGACACAAATTTGCTTCTTTCGGA 59.662 37.500 18.12 0.00 0.00 4.55
49 50 4.610945 AGACACAAATTTGCTTCTTTCGG 58.389 39.130 18.12 0.09 0.00 4.30
120 121 3.074412 CGTGGAGGCACAGATTAACTTT 58.926 45.455 0.00 0.00 0.00 2.66
129 130 2.672961 TATTTCTCGTGGAGGCACAG 57.327 50.000 0.00 0.00 0.00 3.66
130 131 3.410631 TTTATTTCTCGTGGAGGCACA 57.589 42.857 0.00 0.00 0.00 4.57
147 148 5.067273 TCTTCCGAAAGAGGCACAATTTTA 58.933 37.500 0.00 0.00 36.59 1.52
152 153 2.104111 TCTTCTTCCGAAAGAGGCACAA 59.896 45.455 0.00 0.00 42.36 3.33
154 155 2.457366 TCTTCTTCCGAAAGAGGCAC 57.543 50.000 0.00 0.00 42.36 5.01
190 192 3.864789 TTCTGGAGAGAAAAAGTGCCT 57.135 42.857 0.00 0.00 35.14 4.75
191 193 4.331108 AGATTCTGGAGAGAAAAAGTGCC 58.669 43.478 0.00 0.00 41.64 5.01
192 194 7.041098 TGTTTAGATTCTGGAGAGAAAAAGTGC 60.041 37.037 0.00 0.00 41.64 4.40
193 195 8.383318 TGTTTAGATTCTGGAGAGAAAAAGTG 57.617 34.615 0.00 0.00 41.64 3.16
194 196 8.980481 TTGTTTAGATTCTGGAGAGAAAAAGT 57.020 30.769 0.00 0.00 41.64 2.66
252 255 2.968655 CGCGTTTTCGGTTTTTAGAAGG 59.031 45.455 0.00 0.00 44.29 3.46
253 256 3.610495 ACGCGTTTTCGGTTTTTAGAAG 58.390 40.909 5.58 0.00 44.29 2.85
306 309 1.137404 CTTATGCACGGTGCTTGGC 59.863 57.895 30.81 7.55 45.31 4.52
315 318 7.806487 AGCATCAAATCAATTATCTTATGCACG 59.194 33.333 0.00 0.00 39.63 5.34
332 335 4.150451 GCACGCAAACTTTTAGCATCAAAT 59.850 37.500 0.00 0.00 0.00 2.32
341 344 5.447818 CCAAAATTTGGCACGCAAACTTTTA 60.448 36.000 12.23 0.00 45.17 1.52
346 349 2.381699 CCAAAATTTGGCACGCAAAC 57.618 45.000 12.23 0.00 45.17 2.93
365 368 4.272100 CCAACATTTGGCAGCTGC 57.728 55.556 30.88 30.88 45.17 5.25
373 376 6.867816 TGCAATAAAACTCTAGCCAACATTTG 59.132 34.615 0.00 0.00 0.00 2.32
414 417 2.557924 TGACAACCATTGGTGAGATTGC 59.442 45.455 9.62 1.28 35.34 3.56
443 446 6.998968 ACATTTGGCAAAATCAAAAGTTGA 57.001 29.167 17.70 0.00 45.01 3.18
465 483 5.523552 GCTACCAATATTTTGCATTCCCAAC 59.476 40.000 0.00 0.00 0.00 3.77
470 488 7.003939 GGTTTGCTACCAATATTTTGCATTC 57.996 36.000 4.00 0.00 46.92 2.67
485 503 3.763897 AGGGTCATTGATTGGTTTGCTAC 59.236 43.478 0.00 0.00 0.00 3.58
500 518 0.321671 CGTGAGTCCACAAGGGTCAT 59.678 55.000 0.00 0.00 43.34 3.06
527 545 3.503800 AGAACAACTAACCAAGGGGAC 57.496 47.619 0.00 0.00 38.05 4.46
528 546 4.529716 AAAGAACAACTAACCAAGGGGA 57.470 40.909 0.00 0.00 38.05 4.81
540 559 5.699097 TGTACATGCCCTAAAAGAACAAC 57.301 39.130 0.00 0.00 0.00 3.32
544 563 5.329399 ACCATTGTACATGCCCTAAAAGAA 58.671 37.500 0.00 0.00 0.00 2.52
546 565 5.418840 AGAACCATTGTACATGCCCTAAAAG 59.581 40.000 0.00 0.00 0.00 2.27
547 566 5.329399 AGAACCATTGTACATGCCCTAAAA 58.671 37.500 0.00 0.00 0.00 1.52
548 567 4.929479 AGAACCATTGTACATGCCCTAAA 58.071 39.130 0.00 0.00 0.00 1.85
591 610 8.231007 TCTCTCTCCTCCATCTCACTATTTATT 58.769 37.037 0.00 0.00 0.00 1.40
598 617 4.329638 TTTCTCTCTCCTCCATCTCACT 57.670 45.455 0.00 0.00 0.00 3.41
599 618 4.648762 TGATTTCTCTCTCCTCCATCTCAC 59.351 45.833 0.00 0.00 0.00 3.51
604 623 7.927683 TTCTTATGATTTCTCTCTCCTCCAT 57.072 36.000 0.00 0.00 0.00 3.41
630 649 7.208225 AGCCTTGAATAAAAGAAGACAAGTC 57.792 36.000 0.00 0.00 34.77 3.01
631 650 7.094592 GCTAGCCTTGAATAAAAGAAGACAAGT 60.095 37.037 2.29 0.00 34.77 3.16
632 651 7.120432 AGCTAGCCTTGAATAAAAGAAGACAAG 59.880 37.037 12.13 0.00 35.84 3.16
633 652 6.942576 AGCTAGCCTTGAATAAAAGAAGACAA 59.057 34.615 12.13 0.00 0.00 3.18
635 654 6.993786 AGCTAGCCTTGAATAAAAGAAGAC 57.006 37.500 12.13 0.00 0.00 3.01
636 655 9.113838 CAATAGCTAGCCTTGAATAAAAGAAGA 57.886 33.333 18.32 0.00 0.00 2.87
637 656 9.113838 TCAATAGCTAGCCTTGAATAAAAGAAG 57.886 33.333 21.70 0.00 0.00 2.85
638 657 9.632638 ATCAATAGCTAGCCTTGAATAAAAGAA 57.367 29.630 25.49 7.87 33.03 2.52
640 659 9.060347 TCATCAATAGCTAGCCTTGAATAAAAG 57.940 33.333 25.49 15.09 33.03 2.27
641 660 8.978874 TCATCAATAGCTAGCCTTGAATAAAA 57.021 30.769 25.49 12.28 33.03 1.52
642 661 9.224267 GATCATCAATAGCTAGCCTTGAATAAA 57.776 33.333 25.49 15.44 33.03 1.40
643 662 8.600668 AGATCATCAATAGCTAGCCTTGAATAA 58.399 33.333 25.49 17.17 33.03 1.40
644 663 8.143673 AGATCATCAATAGCTAGCCTTGAATA 57.856 34.615 25.49 18.94 33.03 1.75
645 664 7.018487 AGATCATCAATAGCTAGCCTTGAAT 57.982 36.000 25.49 18.39 33.03 2.57
646 665 6.269538 AGAGATCATCAATAGCTAGCCTTGAA 59.730 38.462 25.49 15.45 33.03 2.69
647 666 5.779260 AGAGATCATCAATAGCTAGCCTTGA 59.221 40.000 24.50 24.50 33.75 3.02
648 667 6.040209 AGAGATCATCAATAGCTAGCCTTG 57.960 41.667 12.13 15.45 0.00 3.61
649 668 6.684897 AAGAGATCATCAATAGCTAGCCTT 57.315 37.500 12.13 2.33 0.00 4.35
650 669 6.127366 GCTAAGAGATCATCAATAGCTAGCCT 60.127 42.308 12.13 1.20 40.11 4.58
651 670 6.042143 GCTAAGAGATCATCAATAGCTAGCC 58.958 44.000 12.13 0.00 40.11 3.93
652 671 6.531240 GTGCTAAGAGATCATCAATAGCTAGC 59.469 42.308 6.62 6.62 42.07 3.42
653 672 7.600960 TGTGCTAAGAGATCATCAATAGCTAG 58.399 38.462 14.05 0.00 42.07 3.42
654 673 7.530426 TGTGCTAAGAGATCATCAATAGCTA 57.470 36.000 14.05 0.00 42.07 3.32
655 674 6.416631 TGTGCTAAGAGATCATCAATAGCT 57.583 37.500 14.05 0.00 42.07 3.32
656 675 7.670009 ATTGTGCTAAGAGATCATCAATAGC 57.330 36.000 8.63 8.63 41.99 2.97
659 678 9.217278 GACATATTGTGCTAAGAGATCATCAAT 57.783 33.333 0.00 0.00 0.00 2.57
660 679 8.427276 AGACATATTGTGCTAAGAGATCATCAA 58.573 33.333 0.00 0.00 0.00 2.57
661 680 7.960262 AGACATATTGTGCTAAGAGATCATCA 58.040 34.615 0.00 0.00 0.00 3.07
662 681 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
663 682 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
664 683 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
665 684 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
666 685 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
667 686 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
668 687 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
683 702 8.045176 AGCTATTTCTAAAAACATGGTGAGAC 57.955 34.615 0.00 0.00 0.00 3.36
701 720 8.601546 AGCCTTATCTTCAATAGCTAGCTATTT 58.398 33.333 36.49 26.86 44.18 1.40
711 730 9.638239 GTCATCTCTTAGCCTTATCTTCAATAG 57.362 37.037 0.00 0.00 0.00 1.73
770 791 8.959548 ACAATGATTGATAAAGTCTTGCATGTA 58.040 29.630 12.80 0.00 0.00 2.29
781 802 9.112725 TGAGGACATGTACAATGATTGATAAAG 57.887 33.333 12.80 1.61 0.00 1.85
786 807 6.298441 TCTGAGGACATGTACAATGATTGA 57.702 37.500 12.80 0.00 0.00 2.57
787 808 6.990341 TTCTGAGGACATGTACAATGATTG 57.010 37.500 11.55 3.16 0.00 2.67
788 809 8.585471 AATTTCTGAGGACATGTACAATGATT 57.415 30.769 11.55 0.14 0.00 2.57
790 811 8.539544 TCTAATTTCTGAGGACATGTACAATGA 58.460 33.333 11.55 1.79 0.00 2.57
791 812 8.722480 TCTAATTTCTGAGGACATGTACAATG 57.278 34.615 11.55 1.63 0.00 2.82
794 815 9.567776 TTTTTCTAATTTCTGAGGACATGTACA 57.432 29.630 11.55 0.00 0.00 2.90
797 818 8.924511 TCTTTTTCTAATTTCTGAGGACATGT 57.075 30.769 0.00 0.00 0.00 3.21
852 873 1.475213 CGGGCTTTGGTCCTAGGAATC 60.475 57.143 14.65 9.72 34.49 2.52
933 954 2.108362 CCGGGATAAGGTGCGACC 59.892 66.667 0.00 0.00 38.99 4.79
999 1032 3.136123 CGCAAGCCCACCTCCATG 61.136 66.667 0.00 0.00 0.00 3.66
1096 1129 2.629050 GATGAAGAGGCTACGCGGCA 62.629 60.000 12.47 0.00 41.46 5.69
1393 1432 4.385825 GACTCACAACCACCATCTACAAA 58.614 43.478 0.00 0.00 0.00 2.83
1400 1439 2.746279 TTTGGACTCACAACCACCAT 57.254 45.000 0.00 0.00 35.81 3.55
1430 1469 2.065899 AGGGACTAGCAGAGTAGCAG 57.934 55.000 0.00 0.00 39.06 4.24
1516 1555 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1517 1556 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1518 1557 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1519 1558 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1520 1559 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1521 1560 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1522 1561 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1523 1562 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1564 1603 8.293867 CGTTTCAAAATAGATGACCCAACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
1565 1604 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
1566 1605 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
1567 1606 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
1568 1607 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
1569 1608 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
1570 1609 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
1571 1610 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
1572 1611 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
1573 1612 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
1574 1613 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1575 1614 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
1576 1615 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
1577 1616 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1578 1617 5.731591 ACTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
1579 1618 5.750352 ACTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
1580 1619 4.635699 ACTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
1581 1620 5.012354 ACATACTACTCCCTCCGTTTCAAAA 59.988 40.000 0.00 0.00 0.00 2.44
1582 1621 4.529377 ACATACTACTCCCTCCGTTTCAAA 59.471 41.667 0.00 0.00 0.00 2.69
1583 1622 4.091549 ACATACTACTCCCTCCGTTTCAA 58.908 43.478 0.00 0.00 0.00 2.69
1584 1623 3.705051 ACATACTACTCCCTCCGTTTCA 58.295 45.455 0.00 0.00 0.00 2.69
1585 1624 4.430908 CAACATACTACTCCCTCCGTTTC 58.569 47.826 0.00 0.00 0.00 2.78
1586 1625 3.197116 CCAACATACTACTCCCTCCGTTT 59.803 47.826 0.00 0.00 0.00 3.60
1587 1626 2.764572 CCAACATACTACTCCCTCCGTT 59.235 50.000 0.00 0.00 0.00 4.44
1588 1627 2.385803 CCAACATACTACTCCCTCCGT 58.614 52.381 0.00 0.00 0.00 4.69
1589 1628 1.068741 GCCAACATACTACTCCCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
1590 1629 2.399580 AGCCAACATACTACTCCCTCC 58.600 52.381 0.00 0.00 0.00 4.30
1591 1630 3.451178 TCAAGCCAACATACTACTCCCTC 59.549 47.826 0.00 0.00 0.00 4.30
1592 1631 3.450904 TCAAGCCAACATACTACTCCCT 58.549 45.455 0.00 0.00 0.00 4.20
1593 1632 3.906720 TCAAGCCAACATACTACTCCC 57.093 47.619 0.00 0.00 0.00 4.30
1594 1633 7.011482 CACTAAATCAAGCCAACATACTACTCC 59.989 40.741 0.00 0.00 0.00 3.85
1595 1634 7.764443 TCACTAAATCAAGCCAACATACTACTC 59.236 37.037 0.00 0.00 0.00 2.59
1596 1635 7.620880 TCACTAAATCAAGCCAACATACTACT 58.379 34.615 0.00 0.00 0.00 2.57
1597 1636 7.843490 TCACTAAATCAAGCCAACATACTAC 57.157 36.000 0.00 0.00 0.00 2.73
1598 1637 9.461312 AATTCACTAAATCAAGCCAACATACTA 57.539 29.630 0.00 0.00 0.00 1.82
1599 1638 7.944729 ATTCACTAAATCAAGCCAACATACT 57.055 32.000 0.00 0.00 0.00 2.12
1638 1677 8.615878 ACACAATACTACTACTTTCATTTGCA 57.384 30.769 0.00 0.00 0.00 4.08
1696 1735 6.203723 GCAGCTAATTCGATACCTCAAAGAAT 59.796 38.462 0.00 0.00 33.50 2.40
1707 1746 5.011090 AGTGACAAGCAGCTAATTCGATA 57.989 39.130 0.00 0.00 0.00 2.92
1793 1832 0.322816 GATGGAGGCCAACTGCTGAA 60.323 55.000 5.01 0.00 36.95 3.02
1905 1944 5.501715 GCTGCGAATATCGATGAAGAAAAA 58.498 37.500 8.54 0.00 43.74 1.94
1945 2010 4.219033 CACGCTTAAGTTTTGTGTCATCC 58.781 43.478 4.02 0.00 0.00 3.51
2069 2134 5.707298 ACTCGACAAAAGATTGGTCATGAAT 59.293 36.000 0.00 0.00 41.01 2.57
2084 2149 4.092821 CACTTCAAAGACACACTCGACAAA 59.907 41.667 0.00 0.00 0.00 2.83
2221 2286 9.655769 CAAATATGCAGTAGTTACATTGATGTC 57.344 33.333 0.00 0.00 41.97 3.06
2528 2594 4.241590 TGTCATTTTGGACACAGATTGC 57.758 40.909 0.00 0.00 42.56 3.56
3081 3178 4.659172 CTGCCCCCAAAGCCGACA 62.659 66.667 0.00 0.00 0.00 4.35
3700 4016 2.263099 CTCCCCCTCCACATCTCCCT 62.263 65.000 0.00 0.00 0.00 4.20
3784 4100 0.039618 TTCCTGCCACCATTTCCTCC 59.960 55.000 0.00 0.00 0.00 4.30
3786 4102 0.609131 CGTTCCTGCCACCATTTCCT 60.609 55.000 0.00 0.00 0.00 3.36
3915 4231 3.459969 AGGACACTCCATATTTCCCTTCC 59.540 47.826 0.00 0.00 39.61 3.46
3959 4275 4.039730 AGTCTAGCAGATTCGCCATACAAT 59.960 41.667 0.00 0.00 0.00 2.71
4009 4325 1.017387 CAGAGTCGCCAATAAAGCCC 58.983 55.000 0.00 0.00 0.00 5.19
4415 4735 3.587923 GCTTTGGCAATGCTTTATGTCA 58.412 40.909 25.60 0.00 38.54 3.58
4471 4798 1.202580 GCTGGTGCGAGTAATCTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
4472 4799 0.175760 GCTGGTGCGAGTAATCTGGA 59.824 55.000 0.00 0.00 0.00 3.86
4473 4800 0.108186 TGCTGGTGCGAGTAATCTGG 60.108 55.000 0.00 0.00 43.34 3.86
4474 4801 1.284657 CTGCTGGTGCGAGTAATCTG 58.715 55.000 0.00 0.00 43.34 2.90
4475 4802 0.460987 GCTGCTGGTGCGAGTAATCT 60.461 55.000 0.00 0.00 43.34 2.40
4476 4803 1.432270 GGCTGCTGGTGCGAGTAATC 61.432 60.000 0.00 0.00 43.34 1.75
4477 4804 1.450312 GGCTGCTGGTGCGAGTAAT 60.450 57.895 0.00 0.00 43.34 1.89
4482 4809 4.994471 CACTGGCTGCTGGTGCGA 62.994 66.667 11.07 0.00 43.34 5.10
4517 4844 3.332485 TGAGGTTGGGGCTTTGTTAGTAT 59.668 43.478 0.00 0.00 0.00 2.12
4833 5162 5.482908 TGTTAGACTGCAGATTCTTCCTTC 58.517 41.667 23.35 3.67 0.00 3.46
4916 5245 1.071228 TGATTCGATGAGGATGGCAGG 59.929 52.381 0.00 0.00 0.00 4.85
4936 5265 2.563620 ACCCGTTGTCCTGTTTGTTTTT 59.436 40.909 0.00 0.00 0.00 1.94
5197 6319 6.982160 ATCATAGCATGGCCTTTTGATAAA 57.018 33.333 3.32 0.00 0.00 1.40
5198 6320 7.889600 TGATATCATAGCATGGCCTTTTGATAA 59.110 33.333 3.32 0.00 0.00 1.75
5199 6321 7.404481 TGATATCATAGCATGGCCTTTTGATA 58.596 34.615 3.32 8.77 0.00 2.15
5333 6455 9.382244 GCAGACATGTTGTAACTAAAGTAAAAG 57.618 33.333 0.00 0.00 0.00 2.27
5548 6673 2.554032 GCAGGTTTTGTCAGCACAGTAT 59.446 45.455 0.00 0.00 32.71 2.12
5616 6743 4.021104 ACGCCTTCAATCTAGCTATGCATA 60.021 41.667 6.20 6.20 0.00 3.14
5886 7015 8.697507 ATTAAAGAGTGTGTGGAAAAAGATCT 57.302 30.769 0.00 0.00 0.00 2.75
6381 7519 6.072452 GGGCTGGATTAAACTGATAATAGTGC 60.072 42.308 0.00 0.00 0.00 4.40
6458 7598 0.613260 ATGAGCAAAGCCTACGACCA 59.387 50.000 0.00 0.00 0.00 4.02
6566 7706 1.899814 TGTGCGTGGGAGACTAATCTT 59.100 47.619 0.00 0.00 34.34 2.40
6759 7904 4.058124 TCGGATATTGAAGGAGAAATGCG 58.942 43.478 0.00 0.00 0.00 4.73
6842 8518 2.019249 CAGGTGATGTTATGCAGGGTG 58.981 52.381 0.00 0.00 0.00 4.61
7078 8758 1.342076 ACTATGCCCTCGAGGAGTTGA 60.342 52.381 33.39 12.40 38.24 3.18
7177 8858 5.929992 TGAAAAGTGGTACTGATCCGTTAAG 59.070 40.000 0.00 0.00 0.00 1.85
7219 8905 0.106217 ACCTCACCCCAAAACCAGTG 60.106 55.000 0.00 0.00 0.00 3.66
7397 9136 2.169789 CGAGAACGGATGCTGCAGG 61.170 63.158 17.12 0.00 35.72 4.85
7409 9148 2.095252 GGAGCTTGGCGTCGAGAAC 61.095 63.158 8.91 0.31 0.00 3.01
7452 9191 3.720193 GCACTGCTGTGAGTGGCG 61.720 66.667 25.94 0.00 46.55 5.69
7459 9198 1.134075 GAATCGCTGCACTGCTGTG 59.866 57.895 18.54 18.54 46.37 3.66
7558 9297 1.824230 GCTAGCCAGATCGATCAGGAT 59.176 52.381 33.84 30.66 35.67 3.24
7559 9298 1.252175 GCTAGCCAGATCGATCAGGA 58.748 55.000 33.84 17.15 35.67 3.86
7669 9419 1.481772 TGGGGTTAGGTTAACGGATCG 59.518 52.381 0.00 0.00 39.54 3.69
7759 9509 2.038952 CCACTGTGGGTTGAGAGATTCA 59.961 50.000 19.23 0.00 32.67 2.57
7760 9510 2.039084 ACCACTGTGGGTTGAGAGATTC 59.961 50.000 29.05 0.00 43.37 2.52
7761 9511 2.039084 GACCACTGTGGGTTGAGAGATT 59.961 50.000 29.05 5.39 43.37 2.40
7789 9539 4.079253 GGTCACTGGCTTTTTCCTTGATA 58.921 43.478 0.00 0.00 0.00 2.15
7795 9545 1.632589 ATGGGTCACTGGCTTTTTCC 58.367 50.000 0.00 0.00 0.00 3.13
7809 9559 5.179452 AGCAACATACAACTTCTATGGGT 57.821 39.130 0.00 0.00 0.00 4.51
7860 9610 4.905429 TGAACGAATGAAGGATGAAGGAA 58.095 39.130 0.00 0.00 0.00 3.36
7861 9611 4.020218 ACTGAACGAATGAAGGATGAAGGA 60.020 41.667 0.00 0.00 0.00 3.36
8032 9782 0.468226 TCGGTTATGGGATGGCTGAC 59.532 55.000 0.00 0.00 0.00 3.51
8064 9880 8.915871 ACTTGTATGTTTACATTGCATTGATC 57.084 30.769 15.20 3.66 38.12 2.92
8122 9938 3.994392 ACGAAACATGTCGACAATAAGCT 59.006 39.130 24.13 0.98 43.86 3.74
8310 10126 0.109458 CGTACAGCGCTACTCCAACA 60.109 55.000 10.99 0.00 0.00 3.33
8323 10139 2.161486 GCCTCGCTGCTTCGTACAG 61.161 63.158 0.00 0.00 38.22 2.74
8430 10246 8.642432 TCATCGATTGATTCTCAGGTAAAGTAT 58.358 33.333 0.00 0.00 30.49 2.12
8431 10247 8.007405 TCATCGATTGATTCTCAGGTAAAGTA 57.993 34.615 0.00 0.00 30.49 2.24
8541 10376 0.404040 AGATCCAGACCCCGCAAAAA 59.596 50.000 0.00 0.00 0.00 1.94
8542 10377 0.404040 AAGATCCAGACCCCGCAAAA 59.596 50.000 0.00 0.00 0.00 2.44
8543 10378 0.035439 GAAGATCCAGACCCCGCAAA 60.035 55.000 0.00 0.00 0.00 3.68
8544 10379 0.909610 AGAAGATCCAGACCCCGCAA 60.910 55.000 0.00 0.00 0.00 4.85
8545 10380 0.909610 AAGAAGATCCAGACCCCGCA 60.910 55.000 0.00 0.00 0.00 5.69
8546 10381 0.179070 GAAGAAGATCCAGACCCCGC 60.179 60.000 0.00 0.00 0.00 6.13
8547 10382 1.490574 AGAAGAAGATCCAGACCCCG 58.509 55.000 0.00 0.00 0.00 5.73
8548 10383 4.013050 CAAAAGAAGAAGATCCAGACCCC 58.987 47.826 0.00 0.00 0.00 4.95
8549 10384 3.441922 GCAAAAGAAGAAGATCCAGACCC 59.558 47.826 0.00 0.00 0.00 4.46
8550 10385 4.331108 AGCAAAAGAAGAAGATCCAGACC 58.669 43.478 0.00 0.00 0.00 3.85
8551 10386 5.697826 CAAGCAAAAGAAGAAGATCCAGAC 58.302 41.667 0.00 0.00 0.00 3.51
8552 10387 4.217118 GCAAGCAAAAGAAGAAGATCCAGA 59.783 41.667 0.00 0.00 0.00 3.86
8553 10388 4.022589 TGCAAGCAAAAGAAGAAGATCCAG 60.023 41.667 0.00 0.00 0.00 3.86
8554 10389 3.890756 TGCAAGCAAAAGAAGAAGATCCA 59.109 39.130 0.00 0.00 0.00 3.41
8559 10394 4.036027 TGAGACTGCAAGCAAAAGAAGAAG 59.964 41.667 0.00 0.00 37.60 2.85
8564 10399 2.358898 GGTTGAGACTGCAAGCAAAAGA 59.641 45.455 0.00 0.00 43.66 2.52
8565 10400 2.735823 GGTTGAGACTGCAAGCAAAAG 58.264 47.619 0.00 0.00 43.66 2.27
8577 10412 4.819630 TCCAGTACACATTTTGGTTGAGAC 59.180 41.667 0.00 0.00 32.51 3.36
8608 10443 7.362920 GCAAAGTGTATACATCCAATTGGTCTT 60.363 37.037 23.76 11.34 36.34 3.01
8675 10512 4.158209 GTGTACTGGAGGTTAGAAGAGACC 59.842 50.000 0.00 0.00 36.15 3.85
8676 10513 5.011586 AGTGTACTGGAGGTTAGAAGAGAC 58.988 45.833 0.00 0.00 0.00 3.36
8685 10522 1.620819 CAGCTCAGTGTACTGGAGGTT 59.379 52.381 11.76 0.00 43.91 3.50
8686 10523 1.261480 CAGCTCAGTGTACTGGAGGT 58.739 55.000 11.76 10.16 43.91 3.85
8718 10555 9.126151 CAAATTTAAACAACCCCTTAATGGTTT 57.874 29.630 6.78 0.00 43.52 3.27
8725 10562 6.931840 GTCATGCAAATTTAAACAACCCCTTA 59.068 34.615 0.00 0.00 0.00 2.69
8730 10567 4.697249 GCGTCATGCAAATTTAAACAACC 58.303 39.130 0.00 0.00 45.45 3.77
8752 10589 3.313526 CCTTCCACGCCAAGATGATAAAG 59.686 47.826 0.00 0.00 0.00 1.85
8754 10591 2.238646 ACCTTCCACGCCAAGATGATAA 59.761 45.455 0.00 0.00 0.00 1.75
8755 10592 1.837439 ACCTTCCACGCCAAGATGATA 59.163 47.619 0.00 0.00 0.00 2.15
8756 10593 0.620556 ACCTTCCACGCCAAGATGAT 59.379 50.000 0.00 0.00 0.00 2.45
8758 10595 0.523072 CAACCTTCCACGCCAAGATG 59.477 55.000 0.00 0.00 0.00 2.90
8762 10599 1.826054 CACCAACCTTCCACGCCAA 60.826 57.895 0.00 0.00 0.00 4.52
8763 10600 2.203280 CACCAACCTTCCACGCCA 60.203 61.111 0.00 0.00 0.00 5.69
8764 10601 1.515521 CTTCACCAACCTTCCACGCC 61.516 60.000 0.00 0.00 0.00 5.68
8765 10602 0.534203 TCTTCACCAACCTTCCACGC 60.534 55.000 0.00 0.00 0.00 5.34
8766 10603 1.602377 GTTCTTCACCAACCTTCCACG 59.398 52.381 0.00 0.00 0.00 4.94
8769 10606 5.008712 CAGTAAAGTTCTTCACCAACCTTCC 59.991 44.000 0.00 0.00 0.00 3.46
8770 10607 5.505819 GCAGTAAAGTTCTTCACCAACCTTC 60.506 44.000 0.00 0.00 0.00 3.46
8857 10714 6.434302 TGGATGATCCAATAATTCACCACTT 58.566 36.000 12.63 0.00 45.00 3.16
9048 10907 5.105063 GGAAAGCTGACAAAATATGAAGGC 58.895 41.667 0.00 0.00 0.00 4.35
9106 10965 4.219507 CCCTCGCACTGTAATCATCTCTAT 59.780 45.833 0.00 0.00 0.00 1.98
9248 11118 3.840666 TCTTGCTGAAGAATGGAGGTAGT 59.159 43.478 0.00 0.00 35.14 2.73
9291 11161 2.307686 GAGGTGAAATGGGTTCCCTACA 59.692 50.000 9.43 1.97 37.16 2.74
9308 11178 2.171027 TGGTACGGTTTCTTGTTGAGGT 59.829 45.455 0.00 0.00 0.00 3.85
9310 11180 2.806244 CCTGGTACGGTTTCTTGTTGAG 59.194 50.000 0.00 0.00 0.00 3.02
9337 11207 0.739561 GTGGCCCGTGTCTAGTCTAG 59.260 60.000 0.00 0.00 0.00 2.43
9338 11208 0.330604 AGTGGCCCGTGTCTAGTCTA 59.669 55.000 0.00 0.00 0.00 2.59
9339 11209 1.076906 AGTGGCCCGTGTCTAGTCT 59.923 57.895 0.00 0.00 0.00 3.24
9340 11210 1.215647 CAGTGGCCCGTGTCTAGTC 59.784 63.158 0.00 0.00 0.00 2.59
9341 11211 0.830444 TTCAGTGGCCCGTGTCTAGT 60.830 55.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.