Multiple sequence alignment - TraesCS7A01G244900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G244900 chr7A 100.000 3293 0 0 1 3293 222640298 222637006 0.000000e+00 6082.0
1 TraesCS7A01G244900 chr7A 89.445 739 49 15 1882 2600 619563342 619564071 0.000000e+00 905.0
2 TraesCS7A01G244900 chr7A 88.757 756 56 15 1865 2600 169733868 169733122 0.000000e+00 898.0
3 TraesCS7A01G244900 chr7A 81.503 173 24 6 3126 3293 24675273 24675442 5.730000e-28 135.0
4 TraesCS7A01G244900 chr7A 81.034 174 23 7 3126 3293 24694518 24694687 2.670000e-26 130.0
5 TraesCS7A01G244900 chr7A 79.528 127 17 8 521 645 85900464 85900583 7.570000e-12 82.4
6 TraesCS7A01G244900 chr7D 91.440 2722 153 31 383 3084 210023668 210021007 0.000000e+00 3663.0
7 TraesCS7A01G244900 chr7D 79.597 397 77 4 2 396 210035539 210035145 6.960000e-72 281.0
8 TraesCS7A01G244900 chr7B 92.336 2466 136 25 594 3050 191520692 191523113 0.000000e+00 3458.0
9 TraesCS7A01G244900 chr7B 83.453 556 80 9 2 549 191519932 191520483 1.050000e-139 507.0
10 TraesCS7A01G244900 chr6B 89.815 756 51 14 1865 2600 438944944 438945693 0.000000e+00 946.0
11 TraesCS7A01G244900 chr6B 97.826 46 1 0 1151 1196 438944898 438944943 2.720000e-11 80.5
12 TraesCS7A01G244900 chr5A 87.568 555 43 14 2066 2600 396378955 396379503 1.300000e-173 619.0
13 TraesCS7A01G244900 chr5A 81.314 487 88 2 1747 2233 476414002 476414485 3.080000e-105 392.0
14 TraesCS7A01G244900 chr5A 79.532 513 74 19 1039 1535 476413258 476413755 1.460000e-88 337.0
15 TraesCS7A01G244900 chr5A 96.970 198 6 0 1865 2062 396370020 396370217 1.890000e-87 333.0
16 TraesCS7A01G244900 chr5B 81.542 493 88 2 1741 2233 447559218 447559707 1.420000e-108 403.0
17 TraesCS7A01G244900 chr5D 81.109 487 89 2 1747 2233 374707686 374708169 1.430000e-103 387.0
18 TraesCS7A01G244900 chr5D 80.078 512 82 12 1039 1535 374706933 374707439 2.420000e-96 363.0
19 TraesCS7A01G244900 chr5D 80.976 205 28 6 3090 3293 501431628 501431434 5.690000e-33 152.0
20 TraesCS7A01G244900 chr5D 82.927 82 11 1 3215 3293 262831486 262831405 1.640000e-08 71.3
21 TraesCS7A01G244900 chr2B 84.559 272 22 13 2343 2600 464825692 464825427 5.450000e-63 252.0
22 TraesCS7A01G244900 chr2B 80.000 145 27 2 527 670 240294623 240294766 4.490000e-19 106.0
23 TraesCS7A01G244900 chr2B 74.510 204 47 5 555 754 94572953 94572751 2.110000e-12 84.2
24 TraesCS7A01G244900 chr3A 83.448 145 21 3 531 672 670551926 670552070 7.410000e-27 132.0
25 TraesCS7A01G244900 chr4B 77.895 190 39 3 542 729 453082049 453081861 7.470000e-22 115.0
26 TraesCS7A01G244900 chr1A 80.292 137 26 1 532 667 11945264 11945128 5.810000e-18 102.0
27 TraesCS7A01G244900 chr4D 75.843 178 31 10 531 705 487379789 487379957 2.720000e-11 80.5
28 TraesCS7A01G244900 chr3D 89.286 56 6 0 531 586 586581981 586581926 1.640000e-08 71.3
29 TraesCS7A01G244900 chrUn 82.353 68 6 5 500 566 100488401 100488463 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G244900 chr7A 222637006 222640298 3292 True 6082.00 6082 100.0000 1 3293 1 chr7A.!!$R2 3292
1 TraesCS7A01G244900 chr7A 619563342 619564071 729 False 905.00 905 89.4450 1882 2600 1 chr7A.!!$F4 718
2 TraesCS7A01G244900 chr7A 169733122 169733868 746 True 898.00 898 88.7570 1865 2600 1 chr7A.!!$R1 735
3 TraesCS7A01G244900 chr7D 210021007 210023668 2661 True 3663.00 3663 91.4400 383 3084 1 chr7D.!!$R1 2701
4 TraesCS7A01G244900 chr7B 191519932 191523113 3181 False 1982.50 3458 87.8945 2 3050 2 chr7B.!!$F1 3048
5 TraesCS7A01G244900 chr6B 438944898 438945693 795 False 513.25 946 93.8205 1151 2600 2 chr6B.!!$F1 1449
6 TraesCS7A01G244900 chr5A 396378955 396379503 548 False 619.00 619 87.5680 2066 2600 1 chr5A.!!$F2 534
7 TraesCS7A01G244900 chr5A 476413258 476414485 1227 False 364.50 392 80.4230 1039 2233 2 chr5A.!!$F3 1194
8 TraesCS7A01G244900 chr5D 374706933 374708169 1236 False 375.00 387 80.5935 1039 2233 2 chr5D.!!$F1 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 1129 0.106894 GCGTCCCCCTATTCTTGGAG 59.893 60.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2493 2790 0.900182 CAAGAAAGGCCTTGGACCCC 60.9 60.0 21.33 4.54 39.74 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.882324 TCATACGAAGCGCACAATGTA 58.118 42.857 11.47 5.28 0.00 2.29
43 44 2.373540 TGTACGTCTTGGATTTCCGG 57.626 50.000 0.00 0.00 39.43 5.14
44 45 1.619827 TGTACGTCTTGGATTTCCGGT 59.380 47.619 0.00 0.00 39.43 5.28
57 58 2.845363 TTCCGGTTCTAGTTCCAACC 57.155 50.000 0.00 1.74 39.04 3.77
65 66 4.380867 GGTTCTAGTTCCAACCGATAACGA 60.381 45.833 0.00 0.00 42.66 3.85
71 72 0.661020 CCAACCGATAACGATTGCCC 59.339 55.000 0.00 0.00 41.21 5.36
72 73 1.663695 CAACCGATAACGATTGCCCT 58.336 50.000 0.00 0.00 36.21 5.19
73 74 1.597663 CAACCGATAACGATTGCCCTC 59.402 52.381 0.00 0.00 36.21 4.30
79 80 2.672961 TAACGATTGCCCTCACTCAG 57.327 50.000 0.00 0.00 0.00 3.35
81 82 1.817099 CGATTGCCCTCACTCAGCC 60.817 63.158 0.00 0.00 0.00 4.85
89 90 0.534412 CCTCACTCAGCCTCGTCAAT 59.466 55.000 0.00 0.00 0.00 2.57
94 95 1.144565 CTCAGCCTCGTCAATGAGCG 61.145 60.000 0.00 0.00 33.41 5.03
98 99 1.687494 GCCTCGTCAATGAGCGTGTC 61.687 60.000 5.47 0.00 34.56 3.67
99 100 1.406219 CCTCGTCAATGAGCGTGTCG 61.406 60.000 5.47 0.00 34.56 4.35
115 116 2.582498 CGGGTTCGTGGCGATCTC 60.582 66.667 0.00 0.00 35.23 2.75
118 119 1.519455 GGTTCGTGGCGATCTCCAG 60.519 63.158 4.20 0.00 36.67 3.86
129 130 0.834261 GATCTCCAGGCCCCCTCTAC 60.834 65.000 0.00 0.00 0.00 2.59
131 132 3.289211 TCCAGGCCCCCTCTACCA 61.289 66.667 0.00 0.00 0.00 3.25
132 133 3.090532 CCAGGCCCCCTCTACCAC 61.091 72.222 0.00 0.00 0.00 4.16
144 145 2.685897 CCTCTACCACTTTCTCTCTCCG 59.314 54.545 0.00 0.00 0.00 4.63
188 189 2.296920 TGGCCGCCACTATCTTCTT 58.703 52.632 8.43 0.00 0.00 2.52
191 192 1.009829 GCCGCCACTATCTTCTTGTG 58.990 55.000 0.00 0.00 0.00 3.33
192 193 1.676014 GCCGCCACTATCTTCTTGTGT 60.676 52.381 0.00 0.00 0.00 3.72
193 194 2.418197 GCCGCCACTATCTTCTTGTGTA 60.418 50.000 0.00 0.00 0.00 2.90
194 195 3.187700 CCGCCACTATCTTCTTGTGTAC 58.812 50.000 0.00 0.00 0.00 2.90
195 196 3.368013 CCGCCACTATCTTCTTGTGTACA 60.368 47.826 0.00 0.00 0.00 2.90
197 198 4.504461 CGCCACTATCTTCTTGTGTACATC 59.496 45.833 0.00 0.00 0.00 3.06
209 210 7.153217 TCTTGTGTACATCGATGACTTTCTA 57.847 36.000 31.33 9.62 0.00 2.10
229 230 6.859112 TCTAGTCACTCCTTTTATGAGCTT 57.141 37.500 0.00 0.00 32.98 3.74
232 233 5.486526 AGTCACTCCTTTTATGAGCTTCTG 58.513 41.667 0.00 0.00 32.98 3.02
236 237 5.884792 CACTCCTTTTATGAGCTTCTGGATT 59.115 40.000 0.00 0.00 32.98 3.01
241 242 6.350780 CCTTTTATGAGCTTCTGGATTTGCTT 60.351 38.462 0.00 0.00 35.76 3.91
249 250 2.430465 TCTGGATTTGCTTCACTCAGC 58.570 47.619 0.00 0.00 40.55 4.26
251 252 0.449388 GGATTTGCTTCACTCAGCCG 59.551 55.000 0.00 0.00 39.25 5.52
293 294 0.167470 CTTTGCTCATGGCGTGTCAG 59.833 55.000 6.60 0.00 45.43 3.51
301 302 1.136891 CATGGCGTGTCAGAGTGGATA 59.863 52.381 0.00 0.00 0.00 2.59
308 309 3.491619 CGTGTCAGAGTGGATATTGGAGG 60.492 52.174 0.00 0.00 0.00 4.30
309 310 3.041211 TGTCAGAGTGGATATTGGAGGG 58.959 50.000 0.00 0.00 0.00 4.30
328 329 2.614229 GGGAGAAGACTTTGGCACTCTC 60.614 54.545 0.00 0.00 0.00 3.20
341 342 5.885230 TGGCACTCTCAAGTATTTGAATG 57.115 39.130 2.06 2.91 42.48 2.67
343 344 6.472016 TGGCACTCTCAAGTATTTGAATGTA 58.528 36.000 2.06 0.00 42.48 2.29
362 363 9.695526 TGAATGTATTTTCAATTTCTGTGAAGG 57.304 29.630 0.00 0.00 36.41 3.46
364 365 6.148948 TGTATTTTCAATTTCTGTGAAGGCG 58.851 36.000 0.00 0.00 36.41 5.52
366 367 5.759506 TTTTCAATTTCTGTGAAGGCGTA 57.240 34.783 0.00 0.00 36.41 4.42
367 368 5.759506 TTTCAATTTCTGTGAAGGCGTAA 57.240 34.783 0.00 0.00 36.41 3.18
398 399 2.678336 GACCTATGGCCTTTTCGAACAG 59.322 50.000 3.32 4.27 0.00 3.16
410 411 3.358707 TTCGAACAGAAGACGCTACAA 57.641 42.857 0.00 0.00 34.26 2.41
486 503 4.463539 CAGATGGTGAAATCAACCCATCAA 59.536 41.667 23.97 0.00 45.04 2.57
498 515 3.372440 ACCCATCAAGATTCAAGTCCC 57.628 47.619 0.00 0.00 0.00 4.46
501 518 3.887716 CCCATCAAGATTCAAGTCCCATC 59.112 47.826 0.00 0.00 0.00 3.51
502 519 4.529897 CCATCAAGATTCAAGTCCCATCA 58.470 43.478 0.00 0.00 0.00 3.07
503 520 4.579340 CCATCAAGATTCAAGTCCCATCAG 59.421 45.833 0.00 0.00 0.00 2.90
504 521 4.226427 TCAAGATTCAAGTCCCATCAGG 57.774 45.455 0.00 0.00 0.00 3.86
505 522 3.845992 TCAAGATTCAAGTCCCATCAGGA 59.154 43.478 0.00 0.00 44.91 3.86
567 585 1.135315 CAGGCTTTTCGGCGATGTG 59.865 57.895 11.76 4.73 44.22 3.21
577 595 2.202222 GCGATGTGCGTTCAGTGC 60.202 61.111 0.00 0.00 43.41 4.40
578 596 2.094539 CGATGTGCGTTCAGTGCG 59.905 61.111 0.00 0.00 34.64 5.34
582 600 3.414700 GTGCGTTCAGTGCGAGGG 61.415 66.667 0.00 0.00 34.24 4.30
592 610 4.243008 TGCGAGGGGACGTTTGCA 62.243 61.111 0.00 0.00 36.02 4.08
597 779 0.672401 GAGGGGACGTTTGCATCGAA 60.672 55.000 16.52 0.00 0.00 3.71
614 796 3.591023 TCGAATATGAAGGCGTTTGTGA 58.409 40.909 0.00 0.00 0.00 3.58
636 818 7.602265 TGTGACGACTTCATCAATCTCAAAATA 59.398 33.333 0.00 0.00 36.32 1.40
663 845 1.469308 CGGCTTAGTCTCTCGAAGTGT 59.531 52.381 0.00 0.00 32.61 3.55
685 867 3.727726 TCATAGGGATAATGTGTGCACG 58.272 45.455 13.13 0.00 0.00 5.34
708 898 0.670162 GCGTTATAGGGGTGAGCGTA 59.330 55.000 0.00 0.00 0.00 4.42
709 899 1.271656 GCGTTATAGGGGTGAGCGTAT 59.728 52.381 0.00 0.00 0.00 3.06
710 900 2.489329 GCGTTATAGGGGTGAGCGTATA 59.511 50.000 0.00 0.00 0.00 1.47
711 901 3.129988 GCGTTATAGGGGTGAGCGTATAT 59.870 47.826 0.00 0.00 0.00 0.86
712 902 4.336433 GCGTTATAGGGGTGAGCGTATATA 59.664 45.833 0.00 0.00 0.00 0.86
713 903 5.731686 GCGTTATAGGGGTGAGCGTATATAC 60.732 48.000 2.53 2.53 0.00 1.47
748 938 2.163010 TCTGCGTCCTTACCGTCTTAAG 59.837 50.000 0.00 0.00 0.00 1.85
752 942 4.179298 GCGTCCTTACCGTCTTAAGAAAT 58.821 43.478 6.78 0.00 31.60 2.17
753 943 5.105797 TGCGTCCTTACCGTCTTAAGAAATA 60.106 40.000 6.78 0.00 31.60 1.40
754 944 5.458126 GCGTCCTTACCGTCTTAAGAAATAG 59.542 44.000 6.78 0.00 31.60 1.73
757 947 7.219726 CGTCCTTACCGTCTTAAGAAATAGAAC 59.780 40.741 6.78 0.00 31.60 3.01
759 949 8.587608 TCCTTACCGTCTTAAGAAATAGAACAA 58.412 33.333 6.78 0.00 31.60 2.83
760 950 9.379791 CCTTACCGTCTTAAGAAATAGAACAAT 57.620 33.333 6.78 0.00 31.60 2.71
810 1004 5.812652 ACTAGAAGAGAGCGACGATTTAAG 58.187 41.667 0.00 0.00 0.00 1.85
811 1005 3.440228 AGAAGAGAGCGACGATTTAAGC 58.560 45.455 0.00 0.00 0.00 3.09
812 1006 2.941453 AGAGAGCGACGATTTAAGCA 57.059 45.000 0.00 0.00 0.00 3.91
814 1008 1.855360 GAGAGCGACGATTTAAGCAGG 59.145 52.381 0.00 0.00 0.00 4.85
815 1009 0.931005 GAGCGACGATTTAAGCAGGG 59.069 55.000 0.00 0.00 0.00 4.45
816 1010 1.090052 AGCGACGATTTAAGCAGGGC 61.090 55.000 0.00 0.00 0.00 5.19
817 1011 1.366111 GCGACGATTTAAGCAGGGCA 61.366 55.000 0.00 0.00 0.00 5.36
819 1013 1.739067 GACGATTTAAGCAGGGCAGT 58.261 50.000 0.00 0.00 0.00 4.40
820 1014 1.398390 GACGATTTAAGCAGGGCAGTG 59.602 52.381 0.00 0.00 0.00 3.66
821 1015 1.003118 ACGATTTAAGCAGGGCAGTGA 59.997 47.619 0.00 0.00 0.00 3.41
822 1016 1.667724 CGATTTAAGCAGGGCAGTGAG 59.332 52.381 0.00 0.00 0.00 3.51
823 1017 2.677902 CGATTTAAGCAGGGCAGTGAGA 60.678 50.000 0.00 0.00 0.00 3.27
824 1018 2.185004 TTTAAGCAGGGCAGTGAGAC 57.815 50.000 0.00 0.00 0.00 3.36
884 1078 2.680841 CTCCTCTTATATCTCGCCTCCG 59.319 54.545 0.00 0.00 0.00 4.63
919 1113 4.673298 TCACCATTCCACGCGCGT 62.673 61.111 32.73 32.73 0.00 6.01
934 1128 1.682451 CGCGTCCCCCTATTCTTGGA 61.682 60.000 0.00 0.00 0.00 3.53
935 1129 0.106894 GCGTCCCCCTATTCTTGGAG 59.893 60.000 0.00 0.00 0.00 3.86
936 1130 0.106894 CGTCCCCCTATTCTTGGAGC 59.893 60.000 0.00 0.00 0.00 4.70
954 1149 2.592993 CGCCCAAACTCCTCCCTCA 61.593 63.158 0.00 0.00 0.00 3.86
1203 1419 1.610673 GGAGGTGACCCTGCTCTCA 60.611 63.158 0.00 0.00 45.32 3.27
1445 1661 2.636412 CCGAGAACGTGCTCCTCCA 61.636 63.158 18.16 0.00 37.88 3.86
1669 1929 3.553828 TTCAGAACCTGGTTCGTTTCT 57.446 42.857 28.57 12.39 45.96 2.52
2217 2504 4.431416 TTACTTCAAGAAGCTCCACCAA 57.569 40.909 9.62 0.00 41.99 3.67
2262 2552 3.786586 GGCTCGTCGTCGTCGTCT 61.787 66.667 11.41 0.00 38.33 4.18
2328 2624 2.189521 CCGGCCATGTGGTAGTCC 59.810 66.667 2.24 0.00 37.57 3.85
2382 2678 2.978010 GAACGGGGGTGCACTGTG 60.978 66.667 17.98 2.76 0.00 3.66
2407 2704 3.106407 GGCAGTGCAGACGTCGAC 61.106 66.667 18.61 5.18 0.00 4.20
2493 2790 1.507141 GAGGTGCACGGTTCAGTTGG 61.507 60.000 11.45 0.00 0.00 3.77
2515 2812 0.600057 GTCCAAGGCCTTTCTTGCTG 59.400 55.000 17.61 2.79 41.89 4.41
2518 2815 2.041620 TCCAAGGCCTTTCTTGCTGTAT 59.958 45.455 17.61 0.00 41.89 2.29
2523 2820 3.507622 AGGCCTTTCTTGCTGTATTTCAC 59.492 43.478 0.00 0.00 0.00 3.18
2524 2821 3.507622 GGCCTTTCTTGCTGTATTTCACT 59.492 43.478 0.00 0.00 0.00 3.41
2555 2860 1.358152 TTCACGAGGGGGTTCTGATT 58.642 50.000 0.00 0.00 0.00 2.57
2556 2861 1.358152 TCACGAGGGGGTTCTGATTT 58.642 50.000 0.00 0.00 0.00 2.17
2571 2881 5.689383 TCTGATTTAAACTGTGACTTGCC 57.311 39.130 0.00 0.00 0.00 4.52
2575 2885 6.058833 TGATTTAAACTGTGACTTGCCACTA 58.941 36.000 0.00 0.00 37.89 2.74
2592 2902 4.437239 CCACTACTCCATCTTGTGTGATC 58.563 47.826 0.00 0.00 0.00 2.92
2600 2910 6.070596 ACTCCATCTTGTGTGATCACTGAATA 60.071 38.462 25.55 11.52 44.14 1.75
2605 2915 7.425577 TCTTGTGTGATCACTGAATAAACTG 57.574 36.000 25.55 10.97 44.14 3.16
2632 2942 3.665190 AGAATTTCTCTGGTGGTCGTTC 58.335 45.455 0.00 0.00 31.12 3.95
2656 2966 6.070021 TCACTGGAACCATAGACTTTGATGAT 60.070 38.462 0.00 0.00 0.00 2.45
2657 2967 6.037940 CACTGGAACCATAGACTTTGATGATG 59.962 42.308 0.00 0.00 0.00 3.07
2660 2970 7.805163 TGGAACCATAGACTTTGATGATGTAT 58.195 34.615 0.00 0.00 0.00 2.29
2672 2982 6.918067 TTGATGATGTATAGTCCGATTCCT 57.082 37.500 0.00 0.00 0.00 3.36
2786 3096 4.857871 ACATTTGGTTCGATCGTACATG 57.142 40.909 23.58 19.75 0.00 3.21
3051 3361 9.679661 TTGGTCAAGTATAATCATACACATTGT 57.320 29.630 0.00 0.00 39.69 2.71
3084 3394 4.306600 GACGGGAATGCTTCAATTGTTTT 58.693 39.130 5.13 0.00 0.00 2.43
3085 3395 4.702831 ACGGGAATGCTTCAATTGTTTTT 58.297 34.783 5.13 0.00 0.00 1.94
3086 3396 4.749598 ACGGGAATGCTTCAATTGTTTTTC 59.250 37.500 5.13 3.65 0.00 2.29
3087 3397 4.143347 CGGGAATGCTTCAATTGTTTTTCG 60.143 41.667 5.13 0.00 0.00 3.46
3088 3398 4.152223 GGGAATGCTTCAATTGTTTTTCGG 59.848 41.667 5.13 0.00 0.00 4.30
3089 3399 4.987912 GGAATGCTTCAATTGTTTTTCGGA 59.012 37.500 5.13 0.00 0.00 4.55
3090 3400 5.465056 GGAATGCTTCAATTGTTTTTCGGAA 59.535 36.000 5.13 0.00 0.00 4.30
3091 3401 6.018343 GGAATGCTTCAATTGTTTTTCGGAAA 60.018 34.615 5.13 0.00 0.00 3.13
3092 3402 7.307930 GGAATGCTTCAATTGTTTTTCGGAAAT 60.308 33.333 5.13 0.00 0.00 2.17
3093 3403 8.600449 AATGCTTCAATTGTTTTTCGGAAATA 57.400 26.923 5.13 0.00 0.00 1.40
3094 3404 7.401484 TGCTTCAATTGTTTTTCGGAAATAC 57.599 32.000 14.61 14.61 0.00 1.89
3095 3405 7.206687 TGCTTCAATTGTTTTTCGGAAATACT 58.793 30.769 19.80 3.69 0.00 2.12
3096 3406 8.353684 TGCTTCAATTGTTTTTCGGAAATACTA 58.646 29.630 19.80 14.86 0.00 1.82
3097 3407 9.187455 GCTTCAATTGTTTTTCGGAAATACTAA 57.813 29.630 19.80 14.18 0.00 2.24
3102 3412 9.634163 AATTGTTTTTCGGAAATACTAATGTCC 57.366 29.630 19.80 0.00 36.27 4.02
3103 3413 7.747155 TGTTTTTCGGAAATACTAATGTCCA 57.253 32.000 19.80 0.88 39.27 4.02
3104 3414 7.586747 TGTTTTTCGGAAATACTAATGTCCAC 58.413 34.615 19.80 0.00 39.27 4.02
3105 3415 7.228906 TGTTTTTCGGAAATACTAATGTCCACA 59.771 33.333 19.80 0.00 39.27 4.17
3106 3416 6.730960 TTTCGGAAATACTAATGTCCACAC 57.269 37.500 0.00 0.00 39.27 3.82
3107 3417 4.426416 TCGGAAATACTAATGTCCACACG 58.574 43.478 0.00 0.00 39.27 4.49
3108 3418 4.082081 TCGGAAATACTAATGTCCACACGT 60.082 41.667 0.00 0.00 39.27 4.49
3109 3419 4.032445 CGGAAATACTAATGTCCACACGTG 59.968 45.833 15.48 15.48 39.27 4.49
3110 3420 4.933400 GGAAATACTAATGTCCACACGTGT 59.067 41.667 17.22 17.22 39.14 4.49
3111 3421 5.163893 GGAAATACTAATGTCCACACGTGTG 60.164 44.000 36.13 36.13 39.14 3.82
3120 3430 2.775351 CACACGTGTGGAGGTTTGT 58.225 52.632 35.65 1.12 42.10 2.83
3121 3431 1.942677 CACACGTGTGGAGGTTTGTA 58.057 50.000 35.65 0.00 42.10 2.41
3122 3432 2.489971 CACACGTGTGGAGGTTTGTAT 58.510 47.619 35.65 0.33 42.10 2.29
3123 3433 2.478894 CACACGTGTGGAGGTTTGTATC 59.521 50.000 35.65 0.00 42.10 2.24
3124 3434 2.367567 ACACGTGTGGAGGTTTGTATCT 59.632 45.455 22.71 0.00 34.19 1.98
3125 3435 2.993899 CACGTGTGGAGGTTTGTATCTC 59.006 50.000 7.58 0.00 0.00 2.75
3126 3436 2.259618 CGTGTGGAGGTTTGTATCTCG 58.740 52.381 0.00 0.00 0.00 4.04
3127 3437 2.000447 GTGTGGAGGTTTGTATCTCGC 59.000 52.381 0.00 0.00 0.00 5.03
3128 3438 1.066430 TGTGGAGGTTTGTATCTCGCC 60.066 52.381 0.00 0.00 0.00 5.54
3129 3439 0.539986 TGGAGGTTTGTATCTCGCCC 59.460 55.000 0.00 0.00 0.00 6.13
3130 3440 0.539986 GGAGGTTTGTATCTCGCCCA 59.460 55.000 0.00 0.00 0.00 5.36
3131 3441 1.653151 GAGGTTTGTATCTCGCCCAC 58.347 55.000 0.00 0.00 0.00 4.61
3132 3442 0.981183 AGGTTTGTATCTCGCCCACA 59.019 50.000 0.00 0.00 0.00 4.17
3133 3443 1.084289 GGTTTGTATCTCGCCCACAC 58.916 55.000 0.00 0.00 0.00 3.82
3134 3444 0.719465 GTTTGTATCTCGCCCACACG 59.281 55.000 0.00 0.00 0.00 4.49
3135 3445 0.319083 TTTGTATCTCGCCCACACGT 59.681 50.000 0.00 0.00 0.00 4.49
3136 3446 1.175654 TTGTATCTCGCCCACACGTA 58.824 50.000 0.00 0.00 0.00 3.57
3137 3447 1.395635 TGTATCTCGCCCACACGTAT 58.604 50.000 0.00 0.00 0.00 3.06
3138 3448 1.066454 TGTATCTCGCCCACACGTATG 59.934 52.381 0.00 0.00 0.00 2.39
3139 3449 0.671796 TATCTCGCCCACACGTATGG 59.328 55.000 5.69 5.69 39.71 2.74
3140 3450 1.040893 ATCTCGCCCACACGTATGGA 61.041 55.000 16.19 0.00 43.02 3.41
3141 3451 1.040893 TCTCGCCCACACGTATGGAT 61.041 55.000 16.19 0.00 43.02 3.41
3142 3452 0.597637 CTCGCCCACACGTATGGATC 60.598 60.000 16.19 4.66 43.02 3.36
3143 3453 1.142965 CGCCCACACGTATGGATCA 59.857 57.895 16.19 0.00 43.02 2.92
3144 3454 0.461163 CGCCCACACGTATGGATCAA 60.461 55.000 16.19 0.00 43.02 2.57
3145 3455 1.014352 GCCCACACGTATGGATCAAC 58.986 55.000 16.19 0.00 43.02 3.18
3146 3456 1.286501 CCCACACGTATGGATCAACG 58.713 55.000 16.19 11.51 43.02 4.10
3151 3461 3.635433 CGTATGGATCAACGTCGGT 57.365 52.632 0.00 0.00 34.48 4.69
3152 3462 1.917273 CGTATGGATCAACGTCGGTT 58.083 50.000 0.00 0.00 36.63 4.44
3153 3463 2.264813 CGTATGGATCAACGTCGGTTT 58.735 47.619 0.00 0.00 32.98 3.27
3154 3464 3.437428 CGTATGGATCAACGTCGGTTTA 58.563 45.455 0.00 0.00 32.98 2.01
3155 3465 3.858812 CGTATGGATCAACGTCGGTTTAA 59.141 43.478 0.00 0.00 32.98 1.52
3156 3466 4.027132 CGTATGGATCAACGTCGGTTTAAG 60.027 45.833 0.00 0.00 32.98 1.85
3157 3467 3.389925 TGGATCAACGTCGGTTTAAGT 57.610 42.857 0.00 0.00 32.98 2.24
3158 3468 3.319755 TGGATCAACGTCGGTTTAAGTC 58.680 45.455 0.00 0.00 32.98 3.01
3159 3469 3.006110 TGGATCAACGTCGGTTTAAGTCT 59.994 43.478 0.00 0.00 32.98 3.24
3160 3470 3.367025 GGATCAACGTCGGTTTAAGTCTG 59.633 47.826 0.00 0.00 32.98 3.51
3161 3471 2.129607 TCAACGTCGGTTTAAGTCTGC 58.870 47.619 0.00 0.00 32.98 4.26
3162 3472 1.862201 CAACGTCGGTTTAAGTCTGCA 59.138 47.619 0.00 0.00 32.98 4.41
3163 3473 2.450609 ACGTCGGTTTAAGTCTGCAT 57.549 45.000 0.00 0.00 0.00 3.96
3164 3474 2.066262 ACGTCGGTTTAAGTCTGCATG 58.934 47.619 0.00 0.00 0.00 4.06
3165 3475 2.288579 ACGTCGGTTTAAGTCTGCATGA 60.289 45.455 0.00 0.00 0.00 3.07
3166 3476 2.734606 CGTCGGTTTAAGTCTGCATGAA 59.265 45.455 0.00 0.00 0.00 2.57
3167 3477 3.370978 CGTCGGTTTAAGTCTGCATGAAT 59.629 43.478 0.00 0.00 0.00 2.57
3168 3478 4.492570 CGTCGGTTTAAGTCTGCATGAATC 60.493 45.833 0.00 0.00 0.00 2.52
3169 3479 4.631813 GTCGGTTTAAGTCTGCATGAATCT 59.368 41.667 0.00 0.00 0.00 2.40
3170 3480 5.122396 GTCGGTTTAAGTCTGCATGAATCTT 59.878 40.000 0.00 0.00 0.00 2.40
3171 3481 5.122239 TCGGTTTAAGTCTGCATGAATCTTG 59.878 40.000 0.00 0.00 0.00 3.02
3172 3482 5.122239 CGGTTTAAGTCTGCATGAATCTTGA 59.878 40.000 0.00 0.00 0.00 3.02
3173 3483 6.183360 CGGTTTAAGTCTGCATGAATCTTGAT 60.183 38.462 0.00 0.00 0.00 2.57
3174 3484 7.011389 CGGTTTAAGTCTGCATGAATCTTGATA 59.989 37.037 0.00 0.00 0.00 2.15
3175 3485 8.844244 GGTTTAAGTCTGCATGAATCTTGATAT 58.156 33.333 0.00 0.00 0.00 1.63
3176 3486 9.661187 GTTTAAGTCTGCATGAATCTTGATATG 57.339 33.333 0.00 0.00 0.00 1.78
3177 3487 8.969260 TTAAGTCTGCATGAATCTTGATATGT 57.031 30.769 0.00 0.00 0.00 2.29
3178 3488 7.876936 AAGTCTGCATGAATCTTGATATGTT 57.123 32.000 0.00 0.00 0.00 2.71
3179 3489 7.876936 AGTCTGCATGAATCTTGATATGTTT 57.123 32.000 0.00 0.00 0.00 2.83
3180 3490 8.289939 AGTCTGCATGAATCTTGATATGTTTT 57.710 30.769 0.00 0.00 0.00 2.43
3181 3491 8.404000 AGTCTGCATGAATCTTGATATGTTTTC 58.596 33.333 0.00 0.00 0.00 2.29
3182 3492 8.404000 GTCTGCATGAATCTTGATATGTTTTCT 58.596 33.333 0.00 0.00 0.00 2.52
3183 3493 8.963725 TCTGCATGAATCTTGATATGTTTTCTT 58.036 29.630 0.00 0.00 0.00 2.52
3210 3520 6.730960 TTTTTATGTCACGTAGGATTGGTC 57.269 37.500 0.00 0.00 0.00 4.02
3211 3521 5.670792 TTTATGTCACGTAGGATTGGTCT 57.329 39.130 0.00 0.00 0.00 3.85
3212 3522 3.526931 ATGTCACGTAGGATTGGTCTG 57.473 47.619 0.00 0.00 0.00 3.51
3213 3523 2.521126 TGTCACGTAGGATTGGTCTGA 58.479 47.619 0.00 0.00 0.00 3.27
3214 3524 3.096852 TGTCACGTAGGATTGGTCTGAT 58.903 45.455 0.00 0.00 0.00 2.90
3215 3525 3.119137 TGTCACGTAGGATTGGTCTGATG 60.119 47.826 0.00 0.00 0.00 3.07
3216 3526 3.096852 TCACGTAGGATTGGTCTGATGT 58.903 45.455 0.00 0.00 0.00 3.06
3217 3527 3.119137 TCACGTAGGATTGGTCTGATGTG 60.119 47.826 0.00 0.00 32.20 3.21
3218 3528 2.832129 ACGTAGGATTGGTCTGATGTGT 59.168 45.455 0.00 0.00 0.00 3.72
3219 3529 3.190079 CGTAGGATTGGTCTGATGTGTG 58.810 50.000 0.00 0.00 0.00 3.82
3220 3530 2.795231 AGGATTGGTCTGATGTGTGG 57.205 50.000 0.00 0.00 0.00 4.17
3221 3531 1.283029 AGGATTGGTCTGATGTGTGGG 59.717 52.381 0.00 0.00 0.00 4.61
3222 3532 1.098050 GATTGGTCTGATGTGTGGGC 58.902 55.000 0.00 0.00 0.00 5.36
3223 3533 0.405198 ATTGGTCTGATGTGTGGGCA 59.595 50.000 0.00 0.00 0.00 5.36
3224 3534 0.405198 TTGGTCTGATGTGTGGGCAT 59.595 50.000 0.00 0.00 0.00 4.40
3225 3535 0.405198 TGGTCTGATGTGTGGGCATT 59.595 50.000 0.00 0.00 0.00 3.56
3226 3536 1.203038 TGGTCTGATGTGTGGGCATTT 60.203 47.619 0.00 0.00 0.00 2.32
3227 3537 2.040947 TGGTCTGATGTGTGGGCATTTA 59.959 45.455 0.00 0.00 0.00 1.40
3228 3538 3.290710 GGTCTGATGTGTGGGCATTTAT 58.709 45.455 0.00 0.00 0.00 1.40
3229 3539 3.701040 GGTCTGATGTGTGGGCATTTATT 59.299 43.478 0.00 0.00 0.00 1.40
3230 3540 4.202050 GGTCTGATGTGTGGGCATTTATTC 60.202 45.833 0.00 0.00 0.00 1.75
3231 3541 3.627123 TCTGATGTGTGGGCATTTATTCG 59.373 43.478 0.00 0.00 0.00 3.34
3232 3542 2.687425 TGATGTGTGGGCATTTATTCGG 59.313 45.455 0.00 0.00 0.00 4.30
3233 3543 2.208132 TGTGTGGGCATTTATTCGGT 57.792 45.000 0.00 0.00 0.00 4.69
3234 3544 2.088423 TGTGTGGGCATTTATTCGGTC 58.912 47.619 0.00 0.00 0.00 4.79
3235 3545 2.088423 GTGTGGGCATTTATTCGGTCA 58.912 47.619 0.00 0.00 0.00 4.02
3236 3546 2.088423 TGTGGGCATTTATTCGGTCAC 58.912 47.619 0.00 0.00 0.00 3.67
3237 3547 1.404035 GTGGGCATTTATTCGGTCACC 59.596 52.381 0.00 0.00 0.00 4.02
3238 3548 1.029681 GGGCATTTATTCGGTCACCC 58.970 55.000 0.00 0.00 0.00 4.61
3239 3549 1.683629 GGGCATTTATTCGGTCACCCA 60.684 52.381 0.00 0.00 36.07 4.51
3240 3550 1.404035 GGCATTTATTCGGTCACCCAC 59.596 52.381 0.00 0.00 0.00 4.61
3241 3551 2.088423 GCATTTATTCGGTCACCCACA 58.912 47.619 0.00 0.00 0.00 4.17
3242 3552 2.687935 GCATTTATTCGGTCACCCACAT 59.312 45.455 0.00 0.00 0.00 3.21
3243 3553 3.489059 GCATTTATTCGGTCACCCACATG 60.489 47.826 0.00 0.00 0.00 3.21
3244 3554 3.426787 TTTATTCGGTCACCCACATGT 57.573 42.857 0.00 0.00 0.00 3.21
3245 3555 2.684001 TATTCGGTCACCCACATGTC 57.316 50.000 0.00 0.00 0.00 3.06
3246 3556 0.035439 ATTCGGTCACCCACATGTCC 60.035 55.000 0.00 0.00 0.00 4.02
3247 3557 2.434185 CGGTCACCCACATGTCCG 60.434 66.667 6.97 6.97 43.13 4.79
3248 3558 2.747686 GGTCACCCACATGTCCGT 59.252 61.111 0.00 0.00 0.00 4.69
3249 3559 1.072505 GGTCACCCACATGTCCGTT 59.927 57.895 0.00 0.00 0.00 4.44
3250 3560 0.536460 GGTCACCCACATGTCCGTTT 60.536 55.000 0.00 0.00 0.00 3.60
3251 3561 1.314730 GTCACCCACATGTCCGTTTT 58.685 50.000 0.00 0.00 0.00 2.43
3252 3562 1.265905 GTCACCCACATGTCCGTTTTC 59.734 52.381 0.00 0.00 0.00 2.29
3253 3563 1.134068 TCACCCACATGTCCGTTTTCA 60.134 47.619 0.00 0.00 0.00 2.69
3254 3564 1.001815 CACCCACATGTCCGTTTTCAC 60.002 52.381 0.00 0.00 0.00 3.18
3255 3565 1.313772 CCCACATGTCCGTTTTCACA 58.686 50.000 0.00 0.00 0.00 3.58
3256 3566 1.001815 CCCACATGTCCGTTTTCACAC 60.002 52.381 0.00 0.00 0.00 3.82
3257 3567 1.673400 CCACATGTCCGTTTTCACACA 59.327 47.619 0.00 0.00 0.00 3.72
3258 3568 2.293122 CCACATGTCCGTTTTCACACAT 59.707 45.455 0.00 0.00 0.00 3.21
3260 3570 2.293122 ACATGTCCGTTTTCACACATGG 59.707 45.455 13.82 0.00 46.97 3.66
3261 3571 2.333688 TGTCCGTTTTCACACATGGA 57.666 45.000 0.00 0.00 0.00 3.41
3262 3572 2.217750 TGTCCGTTTTCACACATGGAG 58.782 47.619 0.00 0.00 0.00 3.86
3263 3573 1.535462 GTCCGTTTTCACACATGGAGG 59.465 52.381 0.00 0.00 0.00 4.30
3264 3574 1.142060 TCCGTTTTCACACATGGAGGT 59.858 47.619 0.00 0.00 0.00 3.85
3265 3575 1.266718 CCGTTTTCACACATGGAGGTG 59.733 52.381 0.00 2.78 44.35 4.00
3266 3576 1.334960 CGTTTTCACACATGGAGGTGC 60.335 52.381 0.00 0.00 42.55 5.01
3267 3577 1.956477 GTTTTCACACATGGAGGTGCT 59.044 47.619 0.00 0.00 42.55 4.40
3268 3578 1.608055 TTTCACACATGGAGGTGCTG 58.392 50.000 0.00 0.00 42.55 4.41
3269 3579 0.250858 TTCACACATGGAGGTGCTGG 60.251 55.000 0.00 0.00 42.55 4.85
3270 3580 1.073722 CACACATGGAGGTGCTGGT 59.926 57.895 0.00 0.00 42.55 4.00
3271 3581 1.073722 ACACATGGAGGTGCTGGTG 59.926 57.895 0.00 0.00 42.55 4.17
3272 3582 1.073722 CACATGGAGGTGCTGGTGT 59.926 57.895 0.00 0.00 31.10 4.16
3273 3583 1.073722 ACATGGAGGTGCTGGTGTG 59.926 57.895 0.00 0.00 0.00 3.82
3274 3584 1.073722 CATGGAGGTGCTGGTGTGT 59.926 57.895 0.00 0.00 0.00 3.72
3275 3585 1.073722 ATGGAGGTGCTGGTGTGTG 59.926 57.895 0.00 0.00 0.00 3.82
3276 3586 2.281761 GGAGGTGCTGGTGTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
3277 3587 2.281761 GAGGTGCTGGTGTGTGGG 60.282 66.667 0.00 0.00 0.00 4.61
3278 3588 4.586235 AGGTGCTGGTGTGTGGGC 62.586 66.667 0.00 0.00 0.00 5.36
3281 3591 4.497984 TGCTGGTGTGTGGGCGTT 62.498 61.111 0.00 0.00 0.00 4.84
3282 3592 3.216292 GCTGGTGTGTGGGCGTTT 61.216 61.111 0.00 0.00 0.00 3.60
3283 3593 1.894756 GCTGGTGTGTGGGCGTTTA 60.895 57.895 0.00 0.00 0.00 2.01
3284 3594 1.448922 GCTGGTGTGTGGGCGTTTAA 61.449 55.000 0.00 0.00 0.00 1.52
3285 3595 0.309612 CTGGTGTGTGGGCGTTTAAC 59.690 55.000 0.00 0.00 0.00 2.01
3286 3596 0.393944 TGGTGTGTGGGCGTTTAACA 60.394 50.000 0.00 0.00 0.00 2.41
3287 3597 0.309612 GGTGTGTGGGCGTTTAACAG 59.690 55.000 0.00 0.00 0.00 3.16
3288 3598 1.018910 GTGTGTGGGCGTTTAACAGT 58.981 50.000 0.00 0.00 0.00 3.55
3289 3599 1.402613 GTGTGTGGGCGTTTAACAGTT 59.597 47.619 0.00 0.00 0.00 3.16
3290 3600 1.671845 TGTGTGGGCGTTTAACAGTTC 59.328 47.619 0.00 0.00 0.00 3.01
3291 3601 0.938713 TGTGGGCGTTTAACAGTTCG 59.061 50.000 0.00 0.00 0.00 3.95
3292 3602 0.385098 GTGGGCGTTTAACAGTTCGC 60.385 55.000 8.90 8.90 46.42 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.279741 ACATTGTGCGCTTCGTATGAT 58.720 42.857 9.73 0.00 0.00 2.45
5 6 1.194547 CAACTACATTGTGCGCTTCGT 59.805 47.619 9.73 1.11 33.20 3.85
21 22 3.323243 CGGAAATCCAAGACGTACAACT 58.677 45.455 0.00 0.00 35.14 3.16
29 30 4.203654 ACTAGAACCGGAAATCCAAGAC 57.796 45.455 9.46 0.00 35.14 3.01
36 37 3.682696 GGTTGGAACTAGAACCGGAAAT 58.317 45.455 9.46 0.00 32.66 2.17
37 38 3.130280 GGTTGGAACTAGAACCGGAAA 57.870 47.619 9.46 0.00 32.66 3.13
43 44 4.737054 TCGTTATCGGTTGGAACTAGAAC 58.263 43.478 0.00 0.00 37.69 3.01
44 45 5.587388 ATCGTTATCGGTTGGAACTAGAA 57.413 39.130 0.00 0.00 37.69 2.10
57 58 2.128035 GAGTGAGGGCAATCGTTATCG 58.872 52.381 0.00 0.00 38.55 2.92
65 66 1.606531 GAGGCTGAGTGAGGGCAAT 59.393 57.895 0.00 0.00 0.00 3.56
71 72 1.203287 TCATTGACGAGGCTGAGTGAG 59.797 52.381 0.00 0.00 0.00 3.51
72 73 1.203287 CTCATTGACGAGGCTGAGTGA 59.797 52.381 0.00 0.00 32.35 3.41
73 74 1.638133 CTCATTGACGAGGCTGAGTG 58.362 55.000 0.00 0.00 32.35 3.51
79 80 1.687494 GACACGCTCATTGACGAGGC 61.687 60.000 13.15 6.09 33.36 4.70
81 82 1.406219 CCGACACGCTCATTGACGAG 61.406 60.000 13.15 9.05 34.67 4.18
89 90 3.598715 ACGAACCCGACACGCTCA 61.599 61.111 0.00 0.00 39.50 4.26
94 95 3.927163 ATCGCCACGAACCCGACAC 62.927 63.158 0.00 0.00 39.99 3.67
98 99 2.582498 GAGATCGCCACGAACCCG 60.582 66.667 0.00 0.00 39.99 5.28
99 100 2.202892 GGAGATCGCCACGAACCC 60.203 66.667 11.06 0.00 39.99 4.11
115 116 3.090532 GTGGTAGAGGGGGCCTGG 61.091 72.222 0.84 0.00 31.76 4.45
118 119 0.914902 AGAAAGTGGTAGAGGGGGCC 60.915 60.000 0.00 0.00 0.00 5.80
123 124 2.685897 CGGAGAGAGAAAGTGGTAGAGG 59.314 54.545 0.00 0.00 0.00 3.69
129 130 0.905337 ACCCCGGAGAGAGAAAGTGG 60.905 60.000 0.73 0.00 0.00 4.00
131 132 0.114560 TCACCCCGGAGAGAGAAAGT 59.885 55.000 0.73 0.00 0.00 2.66
132 133 1.137872 CATCACCCCGGAGAGAGAAAG 59.862 57.143 0.73 0.00 0.00 2.62
183 184 6.587990 AGAAAGTCATCGATGTACACAAGAAG 59.412 38.462 24.09 0.00 0.00 2.85
188 189 6.510879 ACTAGAAAGTCATCGATGTACACA 57.489 37.500 24.09 2.28 0.00 3.72
209 210 5.486526 CAGAAGCTCATAAAAGGAGTGACT 58.513 41.667 0.00 0.00 34.83 3.41
218 219 6.209192 TGAAGCAAATCCAGAAGCTCATAAAA 59.791 34.615 0.00 0.00 36.07 1.52
224 225 3.080319 AGTGAAGCAAATCCAGAAGCTC 58.920 45.455 0.00 0.00 36.07 4.09
229 230 2.430465 GCTGAGTGAAGCAAATCCAGA 58.570 47.619 0.00 0.00 43.01 3.86
232 233 0.449388 CGGCTGAGTGAAGCAAATCC 59.551 55.000 0.00 0.00 45.43 3.01
236 237 1.004560 CTCCGGCTGAGTGAAGCAA 60.005 57.895 0.00 0.00 45.43 3.91
241 242 2.680352 GGTCCTCCGGCTGAGTGA 60.680 66.667 0.00 0.00 39.65 3.41
249 250 3.147595 TCGCATCTGGTCCTCCGG 61.148 66.667 0.00 0.00 41.27 5.14
251 252 0.741221 GTTGTCGCATCTGGTCCTCC 60.741 60.000 0.00 0.00 0.00 4.30
285 286 2.159099 TCCAATATCCACTCTGACACGC 60.159 50.000 0.00 0.00 0.00 5.34
288 289 3.041211 CCCTCCAATATCCACTCTGACA 58.959 50.000 0.00 0.00 0.00 3.58
293 294 4.039852 GTCTTCTCCCTCCAATATCCACTC 59.960 50.000 0.00 0.00 0.00 3.51
301 302 2.291217 GCCAAAGTCTTCTCCCTCCAAT 60.291 50.000 0.00 0.00 0.00 3.16
308 309 2.037772 TGAGAGTGCCAAAGTCTTCTCC 59.962 50.000 0.00 0.00 38.78 3.71
309 310 3.393089 TGAGAGTGCCAAAGTCTTCTC 57.607 47.619 0.00 0.00 38.78 2.87
341 342 6.149633 ACGCCTTCACAGAAATTGAAAATAC 58.850 36.000 0.00 0.00 32.61 1.89
343 344 5.200368 ACGCCTTCACAGAAATTGAAAAT 57.800 34.783 0.00 0.00 32.61 1.82
362 363 6.645415 GGCCATAGGTCATATATACATTACGC 59.355 42.308 0.00 0.00 0.00 4.42
366 367 9.686683 GAAAAGGCCATAGGTCATATATACATT 57.313 33.333 5.01 0.00 0.00 2.71
367 368 7.987458 CGAAAAGGCCATAGGTCATATATACAT 59.013 37.037 5.01 0.00 0.00 2.29
398 399 1.197036 GGGTTTGCTTGTAGCGTCTTC 59.803 52.381 0.00 0.00 46.26 2.87
410 411 2.092103 TCATATTTAGGCCGGGTTTGCT 60.092 45.455 2.18 0.00 0.00 3.91
444 446 8.321353 ACCATCTGAATTACACTCAATTCACTA 58.679 33.333 7.07 1.00 45.46 2.74
451 453 7.665145 TGATTTCACCATCTGAATTACACTCAA 59.335 33.333 0.00 0.00 38.74 3.02
554 572 1.205568 GAACGCACATCGCCGAAAA 59.794 52.632 0.00 0.00 43.23 2.29
557 575 2.809174 CTGAACGCACATCGCCGA 60.809 61.111 0.00 0.00 43.23 5.54
567 585 4.373116 TCCCCTCGCACTGAACGC 62.373 66.667 0.00 0.00 0.00 4.84
574 592 3.723348 GCAAACGTCCCCTCGCAC 61.723 66.667 0.00 0.00 0.00 5.34
577 595 2.452813 CGATGCAAACGTCCCCTCG 61.453 63.158 8.20 0.00 0.00 4.63
578 596 0.672401 TTCGATGCAAACGTCCCCTC 60.672 55.000 14.38 0.00 32.26 4.30
582 600 4.518217 CTTCATATTCGATGCAAACGTCC 58.482 43.478 14.38 0.00 32.26 4.79
592 610 4.034048 GTCACAAACGCCTTCATATTCGAT 59.966 41.667 0.00 0.00 0.00 3.59
597 779 5.096215 AAGTCGTCACAAACGCCTTCATAT 61.096 41.667 0.00 0.00 45.73 1.78
614 796 8.950210 ACATTATTTTGAGATTGATGAAGTCGT 58.050 29.630 0.00 0.00 0.00 4.34
622 804 6.319658 AGCCGACACATTATTTTGAGATTGAT 59.680 34.615 0.00 0.00 0.00 2.57
636 818 2.159366 CGAGAGACTAAGCCGACACATT 60.159 50.000 0.00 0.00 0.00 2.71
663 845 4.126437 CGTGCACACATTATCCCTATGAA 58.874 43.478 18.64 0.00 0.00 2.57
685 867 0.874607 CTCACCCCTATAACGCACGC 60.875 60.000 0.00 0.00 0.00 5.34
708 898 6.183360 ACGCAGATGCTCATACATACGTATAT 60.183 38.462 7.96 0.00 36.32 0.86
709 899 5.123344 ACGCAGATGCTCATACATACGTATA 59.877 40.000 7.96 0.00 36.32 1.47
710 900 4.082733 ACGCAGATGCTCATACATACGTAT 60.083 41.667 1.14 1.14 37.60 3.06
711 901 3.252458 ACGCAGATGCTCATACATACGTA 59.748 43.478 0.00 0.00 39.32 3.57
712 902 2.034685 ACGCAGATGCTCATACATACGT 59.965 45.455 2.95 0.00 39.32 3.57
713 903 2.658802 GACGCAGATGCTCATACATACG 59.341 50.000 2.95 0.00 39.32 3.06
714 904 2.989840 GGACGCAGATGCTCATACATAC 59.010 50.000 2.95 0.00 39.32 2.39
715 905 2.893489 AGGACGCAGATGCTCATACATA 59.107 45.455 2.95 0.00 39.32 2.29
814 1008 0.609406 GGGAAAAGGGTCTCACTGCC 60.609 60.000 0.00 0.00 0.00 4.85
815 1009 0.402121 AGGGAAAAGGGTCTCACTGC 59.598 55.000 0.00 0.00 0.00 4.40
816 1010 1.003696 GGAGGGAAAAGGGTCTCACTG 59.996 57.143 0.00 0.00 0.00 3.66
817 1011 1.363246 GGAGGGAAAAGGGTCTCACT 58.637 55.000 0.00 0.00 0.00 3.41
819 1013 0.104144 TGGGAGGGAAAAGGGTCTCA 60.104 55.000 0.00 0.00 0.00 3.27
820 1014 1.213182 GATGGGAGGGAAAAGGGTCTC 59.787 57.143 0.00 0.00 0.00 3.36
821 1015 1.203622 AGATGGGAGGGAAAAGGGTCT 60.204 52.381 0.00 0.00 0.00 3.85
822 1016 1.213182 GAGATGGGAGGGAAAAGGGTC 59.787 57.143 0.00 0.00 0.00 4.46
823 1017 1.203622 AGAGATGGGAGGGAAAAGGGT 60.204 52.381 0.00 0.00 0.00 4.34
824 1018 1.492599 GAGAGATGGGAGGGAAAAGGG 59.507 57.143 0.00 0.00 0.00 3.95
825 1019 2.437651 GAGAGAGATGGGAGGGAAAAGG 59.562 54.545 0.00 0.00 0.00 3.11
826 1020 3.383223 AGAGAGAGATGGGAGGGAAAAG 58.617 50.000 0.00 0.00 0.00 2.27
827 1021 3.498614 AGAGAGAGATGGGAGGGAAAA 57.501 47.619 0.00 0.00 0.00 2.29
884 1078 1.380650 AGAGAGGCGAGGAGGGTTC 60.381 63.158 0.00 0.00 0.00 3.62
919 1113 1.696097 GCGCTCCAAGAATAGGGGGA 61.696 60.000 0.00 0.00 0.00 4.81
934 1128 4.035102 GGGAGGAGTTTGGGCGCT 62.035 66.667 7.64 0.00 0.00 5.92
935 1129 3.978571 GAGGGAGGAGTTTGGGCGC 62.979 68.421 0.00 0.00 0.00 6.53
936 1130 2.269241 GAGGGAGGAGTTTGGGCG 59.731 66.667 0.00 0.00 0.00 6.13
954 1149 2.344872 GTTTGTACGCCGGGGAGT 59.655 61.111 27.23 6.14 0.00 3.85
1669 1929 4.007940 GCCGTTGCTTCGCGTCAA 62.008 61.111 5.77 6.55 33.53 3.18
2262 2552 1.224069 ACGAGAAGTCCGACGACGAA 61.224 55.000 9.28 0.00 44.28 3.85
2328 2624 2.398498 CAATCTACCGAGGAGCGAATG 58.602 52.381 0.00 0.00 44.57 2.67
2407 2704 3.487202 CCGATCACGCCCGTGTTG 61.487 66.667 18.85 10.80 45.55 3.33
2467 2764 1.002792 GAACCGTGCACCTCTCAAAAC 60.003 52.381 12.15 0.00 0.00 2.43
2493 2790 0.900182 CAAGAAAGGCCTTGGACCCC 60.900 60.000 21.33 4.54 39.74 4.95
2515 2812 6.694411 GTGAATTCATCATGGCAGTGAAATAC 59.306 38.462 12.12 10.56 40.97 1.89
2518 2815 4.379708 CGTGAATTCATCATGGCAGTGAAA 60.380 41.667 12.12 2.98 40.72 2.69
2523 2820 2.289820 CCTCGTGAATTCATCATGGCAG 59.710 50.000 12.12 0.68 43.93 4.85
2524 2821 2.291365 CCTCGTGAATTCATCATGGCA 58.709 47.619 12.12 0.00 43.93 4.92
2555 2860 5.031066 AGTAGTGGCAAGTCACAGTTTAA 57.969 39.130 7.62 0.00 39.93 1.52
2556 2861 4.502604 GGAGTAGTGGCAAGTCACAGTTTA 60.503 45.833 7.62 0.00 39.93 2.01
2571 2881 4.867047 GTGATCACACAAGATGGAGTAGTG 59.133 45.833 21.07 0.00 45.32 2.74
2592 2902 6.893958 ATTCTACTCGCAGTTTATTCAGTG 57.106 37.500 0.00 0.00 0.00 3.66
2600 2910 4.932200 CCAGAGAAATTCTACTCGCAGTTT 59.068 41.667 0.00 0.00 38.08 2.66
2605 2915 3.190874 CCACCAGAGAAATTCTACTCGC 58.809 50.000 0.00 0.00 38.08 5.03
2632 2942 5.491070 TCATCAAAGTCTATGGTTCCAGTG 58.509 41.667 0.00 0.00 0.00 3.66
2656 2966 5.837770 TCCTCTAGGAATCGGACTATACA 57.162 43.478 0.00 0.00 42.18 2.29
2786 3096 9.748100 CTCGAGCTAACTAAAAGAAAGAAAATC 57.252 33.333 0.00 0.00 0.00 2.17
2912 3222 3.588842 TGGAATTATGCAGAGGGGATAGG 59.411 47.826 0.00 0.00 30.94 2.57
3036 3346 8.661257 CGACTTAAACCACAATGTGTATGATTA 58.339 33.333 12.79 0.37 0.00 1.75
3051 3361 2.690786 CATTCCCGTCGACTTAAACCA 58.309 47.619 14.70 0.00 0.00 3.67
3059 3369 1.369625 ATTGAAGCATTCCCGTCGAC 58.630 50.000 5.18 5.18 46.93 4.20
3084 3394 4.865925 CGTGTGGACATTAGTATTTCCGAA 59.134 41.667 0.00 0.00 33.99 4.30
3085 3395 4.082081 ACGTGTGGACATTAGTATTTCCGA 60.082 41.667 0.00 0.00 33.99 4.55
3086 3396 4.032445 CACGTGTGGACATTAGTATTTCCG 59.968 45.833 7.58 0.00 33.99 4.30
3087 3397 4.933400 ACACGTGTGGACATTAGTATTTCC 59.067 41.667 22.71 0.00 32.25 3.13
3088 3398 5.854157 CACACGTGTGGACATTAGTATTTC 58.146 41.667 35.65 0.00 42.10 2.17
3089 3399 5.856126 CACACGTGTGGACATTAGTATTT 57.144 39.130 35.65 0.00 42.10 1.40
3102 3412 1.942677 TACAAACCTCCACACGTGTG 58.057 50.000 36.13 36.13 45.23 3.82
3103 3413 2.367567 AGATACAAACCTCCACACGTGT 59.632 45.455 17.22 17.22 0.00 4.49
3104 3414 2.993899 GAGATACAAACCTCCACACGTG 59.006 50.000 15.48 15.48 0.00 4.49
3105 3415 2.352421 CGAGATACAAACCTCCACACGT 60.352 50.000 0.00 0.00 0.00 4.49
3106 3416 2.259618 CGAGATACAAACCTCCACACG 58.740 52.381 0.00 0.00 0.00 4.49
3107 3417 2.000447 GCGAGATACAAACCTCCACAC 59.000 52.381 0.00 0.00 0.00 3.82
3108 3418 1.066430 GGCGAGATACAAACCTCCACA 60.066 52.381 0.00 0.00 0.00 4.17
3109 3419 1.653151 GGCGAGATACAAACCTCCAC 58.347 55.000 0.00 0.00 0.00 4.02
3110 3420 0.539986 GGGCGAGATACAAACCTCCA 59.460 55.000 0.00 0.00 0.00 3.86
3111 3421 0.539986 TGGGCGAGATACAAACCTCC 59.460 55.000 0.00 0.00 0.00 4.30
3112 3422 1.066430 TGTGGGCGAGATACAAACCTC 60.066 52.381 0.00 0.00 0.00 3.85
3113 3423 0.981183 TGTGGGCGAGATACAAACCT 59.019 50.000 0.00 0.00 0.00 3.50
3114 3424 1.084289 GTGTGGGCGAGATACAAACC 58.916 55.000 0.00 0.00 0.00 3.27
3115 3425 0.719465 CGTGTGGGCGAGATACAAAC 59.281 55.000 0.00 0.00 0.00 2.93
3116 3426 0.319083 ACGTGTGGGCGAGATACAAA 59.681 50.000 0.00 0.00 35.59 2.83
3117 3427 1.175654 TACGTGTGGGCGAGATACAA 58.824 50.000 0.00 0.00 35.59 2.41
3118 3428 1.066454 CATACGTGTGGGCGAGATACA 59.934 52.381 4.09 0.00 35.59 2.29
3119 3429 1.602165 CCATACGTGTGGGCGAGATAC 60.602 57.143 22.66 0.00 35.55 2.24
3120 3430 0.671796 CCATACGTGTGGGCGAGATA 59.328 55.000 22.66 0.00 35.55 1.98
3121 3431 1.040893 TCCATACGTGTGGGCGAGAT 61.041 55.000 28.43 0.00 39.80 2.75
3122 3432 1.040893 ATCCATACGTGTGGGCGAGA 61.041 55.000 28.43 11.48 39.80 4.04
3123 3433 0.597637 GATCCATACGTGTGGGCGAG 60.598 60.000 28.43 5.39 39.80 5.03
3124 3434 1.324005 TGATCCATACGTGTGGGCGA 61.324 55.000 28.43 12.21 39.80 5.54
3125 3435 0.461163 TTGATCCATACGTGTGGGCG 60.461 55.000 28.43 6.12 39.80 6.13
3126 3436 1.014352 GTTGATCCATACGTGTGGGC 58.986 55.000 28.43 20.95 39.80 5.36
3127 3437 1.286501 CGTTGATCCATACGTGTGGG 58.713 55.000 28.43 12.96 39.80 4.61
3133 3443 1.917273 AACCGACGTTGATCCATACG 58.083 50.000 3.74 9.66 43.08 3.06
3134 3444 4.866486 ACTTAAACCGACGTTGATCCATAC 59.134 41.667 3.74 0.00 30.72 2.39
3135 3445 5.075858 ACTTAAACCGACGTTGATCCATA 57.924 39.130 3.74 0.00 30.72 2.74
3136 3446 3.930848 GACTTAAACCGACGTTGATCCAT 59.069 43.478 3.74 0.00 30.72 3.41
3137 3447 3.006110 AGACTTAAACCGACGTTGATCCA 59.994 43.478 3.74 0.00 30.72 3.41
3138 3448 3.367025 CAGACTTAAACCGACGTTGATCC 59.633 47.826 3.74 0.00 30.72 3.36
3139 3449 3.181533 GCAGACTTAAACCGACGTTGATC 60.182 47.826 3.74 0.00 30.72 2.92
3140 3450 2.735134 GCAGACTTAAACCGACGTTGAT 59.265 45.455 3.74 0.00 30.72 2.57
3141 3451 2.129607 GCAGACTTAAACCGACGTTGA 58.870 47.619 3.74 0.00 30.72 3.18
3142 3452 1.862201 TGCAGACTTAAACCGACGTTG 59.138 47.619 0.00 0.00 30.72 4.10
3143 3453 2.228138 TGCAGACTTAAACCGACGTT 57.772 45.000 0.00 0.00 0.00 3.99
3144 3454 2.066262 CATGCAGACTTAAACCGACGT 58.934 47.619 0.00 0.00 0.00 4.34
3145 3455 2.333926 TCATGCAGACTTAAACCGACG 58.666 47.619 0.00 0.00 0.00 5.12
3146 3456 4.631813 AGATTCATGCAGACTTAAACCGAC 59.368 41.667 0.00 0.00 0.00 4.79
3147 3457 4.832248 AGATTCATGCAGACTTAAACCGA 58.168 39.130 0.00 0.00 0.00 4.69
3148 3458 5.122239 TCAAGATTCATGCAGACTTAAACCG 59.878 40.000 0.00 0.00 0.00 4.44
3149 3459 6.500684 TCAAGATTCATGCAGACTTAAACC 57.499 37.500 0.00 0.00 0.00 3.27
3150 3460 9.661187 CATATCAAGATTCATGCAGACTTAAAC 57.339 33.333 0.00 0.00 0.00 2.01
3151 3461 9.399797 ACATATCAAGATTCATGCAGACTTAAA 57.600 29.630 0.00 0.00 0.00 1.52
3152 3462 8.969260 ACATATCAAGATTCATGCAGACTTAA 57.031 30.769 0.00 0.00 0.00 1.85
3153 3463 8.969260 AACATATCAAGATTCATGCAGACTTA 57.031 30.769 0.00 0.00 0.00 2.24
3154 3464 7.876936 AACATATCAAGATTCATGCAGACTT 57.123 32.000 0.00 0.00 0.00 3.01
3155 3465 7.876936 AAACATATCAAGATTCATGCAGACT 57.123 32.000 0.00 0.00 0.00 3.24
3156 3466 8.404000 AGAAAACATATCAAGATTCATGCAGAC 58.596 33.333 0.00 0.00 0.00 3.51
3157 3467 8.515695 AGAAAACATATCAAGATTCATGCAGA 57.484 30.769 0.00 0.00 0.00 4.26
3187 3497 6.370442 CAGACCAATCCTACGTGACATAAAAA 59.630 38.462 0.00 0.00 0.00 1.94
3188 3498 5.872617 CAGACCAATCCTACGTGACATAAAA 59.127 40.000 0.00 0.00 0.00 1.52
3189 3499 5.186215 TCAGACCAATCCTACGTGACATAAA 59.814 40.000 0.00 0.00 0.00 1.40
3190 3500 4.707934 TCAGACCAATCCTACGTGACATAA 59.292 41.667 0.00 0.00 0.00 1.90
3191 3501 4.274978 TCAGACCAATCCTACGTGACATA 58.725 43.478 0.00 0.00 0.00 2.29
3192 3502 3.096852 TCAGACCAATCCTACGTGACAT 58.903 45.455 0.00 0.00 0.00 3.06
3193 3503 2.521126 TCAGACCAATCCTACGTGACA 58.479 47.619 0.00 0.00 0.00 3.58
3194 3504 3.119101 ACATCAGACCAATCCTACGTGAC 60.119 47.826 0.00 0.00 0.00 3.67
3195 3505 3.096852 ACATCAGACCAATCCTACGTGA 58.903 45.455 0.00 0.00 0.00 4.35
3196 3506 3.190079 CACATCAGACCAATCCTACGTG 58.810 50.000 0.00 0.00 0.00 4.49
3197 3507 2.832129 ACACATCAGACCAATCCTACGT 59.168 45.455 0.00 0.00 0.00 3.57
3198 3508 3.190079 CACACATCAGACCAATCCTACG 58.810 50.000 0.00 0.00 0.00 3.51
3199 3509 3.535561 CCACACATCAGACCAATCCTAC 58.464 50.000 0.00 0.00 0.00 3.18
3200 3510 2.505407 CCCACACATCAGACCAATCCTA 59.495 50.000 0.00 0.00 0.00 2.94
3201 3511 1.283029 CCCACACATCAGACCAATCCT 59.717 52.381 0.00 0.00 0.00 3.24
3202 3512 1.755179 CCCACACATCAGACCAATCC 58.245 55.000 0.00 0.00 0.00 3.01
3203 3513 1.098050 GCCCACACATCAGACCAATC 58.902 55.000 0.00 0.00 0.00 2.67
3204 3514 0.405198 TGCCCACACATCAGACCAAT 59.595 50.000 0.00 0.00 0.00 3.16
3205 3515 0.405198 ATGCCCACACATCAGACCAA 59.595 50.000 0.00 0.00 0.00 3.67
3206 3516 0.405198 AATGCCCACACATCAGACCA 59.595 50.000 0.00 0.00 0.00 4.02
3207 3517 1.549203 AAATGCCCACACATCAGACC 58.451 50.000 0.00 0.00 0.00 3.85
3208 3518 4.496341 CGAATAAATGCCCACACATCAGAC 60.496 45.833 0.00 0.00 0.00 3.51
3209 3519 3.627123 CGAATAAATGCCCACACATCAGA 59.373 43.478 0.00 0.00 0.00 3.27
3210 3520 3.243168 CCGAATAAATGCCCACACATCAG 60.243 47.826 0.00 0.00 0.00 2.90
3211 3521 2.687425 CCGAATAAATGCCCACACATCA 59.313 45.455 0.00 0.00 0.00 3.07
3212 3522 2.687935 ACCGAATAAATGCCCACACATC 59.312 45.455 0.00 0.00 0.00 3.06
3213 3523 2.687935 GACCGAATAAATGCCCACACAT 59.312 45.455 0.00 0.00 0.00 3.21
3214 3524 2.088423 GACCGAATAAATGCCCACACA 58.912 47.619 0.00 0.00 0.00 3.72
3215 3525 2.088423 TGACCGAATAAATGCCCACAC 58.912 47.619 0.00 0.00 0.00 3.82
3216 3526 2.088423 GTGACCGAATAAATGCCCACA 58.912 47.619 0.00 0.00 0.00 4.17
3217 3527 1.404035 GGTGACCGAATAAATGCCCAC 59.596 52.381 0.00 0.00 0.00 4.61
3218 3528 1.683629 GGGTGACCGAATAAATGCCCA 60.684 52.381 0.00 0.00 43.64 5.36
3219 3529 1.029681 GGGTGACCGAATAAATGCCC 58.970 55.000 0.00 0.00 43.64 5.36
3232 3542 1.265905 GAAAACGGACATGTGGGTGAC 59.734 52.381 1.15 0.00 0.00 3.67
3233 3543 1.134068 TGAAAACGGACATGTGGGTGA 60.134 47.619 1.15 0.00 0.00 4.02
3234 3544 1.001815 GTGAAAACGGACATGTGGGTG 60.002 52.381 1.15 0.00 0.00 4.61
3235 3545 1.314730 GTGAAAACGGACATGTGGGT 58.685 50.000 1.15 0.00 0.00 4.51
3236 3546 1.001815 GTGTGAAAACGGACATGTGGG 60.002 52.381 1.15 0.00 0.00 4.61
3237 3547 1.673400 TGTGTGAAAACGGACATGTGG 59.327 47.619 1.15 0.00 0.00 4.17
3238 3548 3.299162 CATGTGTGAAAACGGACATGTG 58.701 45.455 1.15 0.00 40.45 3.21
3239 3549 2.293122 CCATGTGTGAAAACGGACATGT 59.707 45.455 0.00 0.00 42.70 3.21
3240 3550 2.551887 TCCATGTGTGAAAACGGACATG 59.448 45.455 0.00 0.00 43.49 3.21
3241 3551 2.813754 CTCCATGTGTGAAAACGGACAT 59.186 45.455 0.00 0.00 0.00 3.06
3242 3552 2.217750 CTCCATGTGTGAAAACGGACA 58.782 47.619 0.00 0.00 0.00 4.02
3243 3553 1.535462 CCTCCATGTGTGAAAACGGAC 59.465 52.381 0.00 0.00 0.00 4.79
3244 3554 1.142060 ACCTCCATGTGTGAAAACGGA 59.858 47.619 0.00 0.00 0.00 4.69
3245 3555 1.266718 CACCTCCATGTGTGAAAACGG 59.733 52.381 2.08 0.00 34.37 4.44
3246 3556 1.334960 GCACCTCCATGTGTGAAAACG 60.335 52.381 10.44 0.00 38.52 3.60
3247 3557 1.956477 AGCACCTCCATGTGTGAAAAC 59.044 47.619 10.44 0.00 38.52 2.43
3248 3558 1.955778 CAGCACCTCCATGTGTGAAAA 59.044 47.619 10.44 0.00 38.52 2.29
3249 3559 1.608055 CAGCACCTCCATGTGTGAAA 58.392 50.000 10.44 0.00 38.52 2.69
3250 3560 0.250858 CCAGCACCTCCATGTGTGAA 60.251 55.000 10.44 0.00 38.52 3.18
3251 3561 1.376086 CCAGCACCTCCATGTGTGA 59.624 57.895 10.44 0.00 38.52 3.58
3252 3562 1.073722 ACCAGCACCTCCATGTGTG 59.926 57.895 0.00 0.00 38.52 3.82
3253 3563 1.073722 CACCAGCACCTCCATGTGT 59.926 57.895 0.00 0.00 38.52 3.72
3254 3564 1.073722 ACACCAGCACCTCCATGTG 59.926 57.895 0.00 0.00 39.29 3.21
3255 3565 1.073722 CACACCAGCACCTCCATGT 59.926 57.895 0.00 0.00 0.00 3.21
3256 3566 1.073722 ACACACCAGCACCTCCATG 59.926 57.895 0.00 0.00 0.00 3.66
3257 3567 1.073722 CACACACCAGCACCTCCAT 59.926 57.895 0.00 0.00 0.00 3.41
3258 3568 2.510411 CACACACCAGCACCTCCA 59.490 61.111 0.00 0.00 0.00 3.86
3259 3569 2.281761 CCACACACCAGCACCTCC 60.282 66.667 0.00 0.00 0.00 4.30
3260 3570 2.281761 CCCACACACCAGCACCTC 60.282 66.667 0.00 0.00 0.00 3.85
3261 3571 4.586235 GCCCACACACCAGCACCT 62.586 66.667 0.00 0.00 0.00 4.00
3264 3574 2.610532 TAAACGCCCACACACCAGCA 62.611 55.000 0.00 0.00 0.00 4.41
3265 3575 1.448922 TTAAACGCCCACACACCAGC 61.449 55.000 0.00 0.00 0.00 4.85
3266 3576 0.309612 GTTAAACGCCCACACACCAG 59.690 55.000 0.00 0.00 0.00 4.00
3267 3577 0.393944 TGTTAAACGCCCACACACCA 60.394 50.000 0.00 0.00 0.00 4.17
3268 3578 0.309612 CTGTTAAACGCCCACACACC 59.690 55.000 0.00 0.00 0.00 4.16
3269 3579 1.018910 ACTGTTAAACGCCCACACAC 58.981 50.000 0.00 0.00 0.00 3.82
3270 3580 1.671845 GAACTGTTAAACGCCCACACA 59.328 47.619 0.00 0.00 0.00 3.72
3271 3581 1.333435 CGAACTGTTAAACGCCCACAC 60.333 52.381 0.00 0.00 0.00 3.82
3272 3582 0.938713 CGAACTGTTAAACGCCCACA 59.061 50.000 0.00 0.00 0.00 4.17
3273 3583 0.385098 GCGAACTGTTAAACGCCCAC 60.385 55.000 12.40 0.00 44.27 4.61
3274 3584 1.943293 GCGAACTGTTAAACGCCCA 59.057 52.632 12.40 0.00 44.27 5.36
3275 3585 4.832767 GCGAACTGTTAAACGCCC 57.167 55.556 12.40 0.00 44.27 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.