Multiple sequence alignment - TraesCS7A01G243600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G243600 chr7A 100.000 3727 0 0 1 3727 219395826 219399552 0.000000e+00 6883.0
1 TraesCS7A01G243600 chr7A 85.874 269 37 1 1 269 163608064 163607797 6.090000e-73 285.0
2 TraesCS7A01G243600 chr2D 83.020 2020 264 51 1031 3018 493883368 493881396 0.000000e+00 1757.0
3 TraesCS7A01G243600 chr2B 89.273 1417 128 11 700 2112 246574390 246575786 0.000000e+00 1753.0
4 TraesCS7A01G243600 chr2B 87.062 371 35 7 2679 3048 246576576 246576934 1.250000e-109 407.0
5 TraesCS7A01G243600 chr2B 84.426 366 40 8 349 711 246570175 246570526 9.910000e-91 344.0
6 TraesCS7A01G243600 chr2B 94.444 36 2 0 3120 3155 246577330 246577365 5.200000e-04 56.5
7 TraesCS7A01G243600 chr2A 85.947 1594 213 7 1031 2620 639694688 639696274 0.000000e+00 1692.0
8 TraesCS7A01G243600 chr6B 80.051 2366 380 55 567 2886 95238131 95235812 0.000000e+00 1670.0
9 TraesCS7A01G243600 chr6B 82.170 1991 274 50 1064 3030 665162313 665160380 0.000000e+00 1635.0
10 TraesCS7A01G243600 chr6B 81.034 1914 292 38 985 2870 159702427 159704297 0.000000e+00 1458.0
11 TraesCS7A01G243600 chr6B 74.719 356 52 18 355 708 665418308 665417989 1.410000e-24 124.0
12 TraesCS7A01G243600 chr6B 80.682 176 21 9 343 514 711695593 711695427 1.410000e-24 124.0
13 TraesCS7A01G243600 chr6B 77.315 216 42 4 494 708 665162930 665162721 1.820000e-23 121.0
14 TraesCS7A01G243600 chr6B 100.000 31 0 0 678 708 665426009 665425979 1.450000e-04 58.4
15 TraesCS7A01G243600 chr6D 82.266 1951 268 48 1104 3030 439922052 439920156 0.000000e+00 1615.0
16 TraesCS7A01G243600 chr6D 82.060 1845 258 39 1064 2896 440015278 440013495 0.000000e+00 1506.0
17 TraesCS7A01G243600 chr6D 82.399 1676 236 36 970 2623 466551955 466550317 0.000000e+00 1406.0
18 TraesCS7A01G243600 chr6D 83.051 413 54 8 1022 1420 466528671 466528261 9.840000e-96 361.0
19 TraesCS7A01G243600 chr6D 74.347 421 68 28 311 706 439922986 439922581 3.880000e-30 143.0
20 TraesCS7A01G243600 chr6D 81.215 181 28 5 700 875 466552251 466552072 1.400000e-29 141.0
21 TraesCS7A01G243600 chr6D 76.498 217 42 5 494 708 440016170 440015961 3.940000e-20 110.0
22 TraesCS7A01G243600 chr6D 73.545 378 61 24 506 866 440221602 440221247 1.420000e-19 108.0
23 TraesCS7A01G243600 chr3A 81.017 1612 276 18 1031 2630 649952803 649954396 0.000000e+00 1254.0
24 TraesCS7A01G243600 chr7D 89.123 570 36 8 2791 3358 206838743 206839288 0.000000e+00 686.0
25 TraesCS7A01G243600 chr7D 95.543 359 12 2 3369 3727 206839481 206839835 4.180000e-159 571.0
26 TraesCS7A01G243600 chr6A 80.359 779 132 15 2124 2886 52466207 52466980 4.180000e-159 571.0
27 TraesCS7A01G243600 chr6A 78.807 788 128 22 2198 2967 588428720 588427954 9.300000e-136 494.0
28 TraesCS7A01G243600 chr6A 77.833 203 38 3 507 708 588355398 588355202 6.540000e-23 119.0
29 TraesCS7A01G243600 chr5D 91.636 275 19 4 1 275 285447690 285447420 9.770000e-101 377.0
30 TraesCS7A01G243600 chr1D 91.273 275 22 2 1 275 416526326 416526054 1.260000e-99 374.0
31 TraesCS7A01G243600 chr1D 90.182 275 26 1 1 275 19925117 19924844 1.270000e-94 357.0
32 TraesCS7A01G243600 chr1A 87.452 263 31 2 20 281 21341814 21341553 6.050000e-78 302.0
33 TraesCS7A01G243600 chr4D 85.124 242 24 3 46 275 46673981 46674222 1.730000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G243600 chr7A 219395826 219399552 3726 False 6883.000 6883 100.00000 1 3727 1 chr7A.!!$F1 3726
1 TraesCS7A01G243600 chr2D 493881396 493883368 1972 True 1757.000 1757 83.02000 1031 3018 1 chr2D.!!$R1 1987
2 TraesCS7A01G243600 chr2B 246570175 246577365 7190 False 640.125 1753 88.80125 349 3155 4 chr2B.!!$F1 2806
3 TraesCS7A01G243600 chr2A 639694688 639696274 1586 False 1692.000 1692 85.94700 1031 2620 1 chr2A.!!$F1 1589
4 TraesCS7A01G243600 chr6B 95235812 95238131 2319 True 1670.000 1670 80.05100 567 2886 1 chr6B.!!$R1 2319
5 TraesCS7A01G243600 chr6B 159702427 159704297 1870 False 1458.000 1458 81.03400 985 2870 1 chr6B.!!$F1 1885
6 TraesCS7A01G243600 chr6B 665160380 665162930 2550 True 878.000 1635 79.74250 494 3030 2 chr6B.!!$R5 2536
7 TraesCS7A01G243600 chr6D 439920156 439922986 2830 True 879.000 1615 78.30650 311 3030 2 chr6D.!!$R3 2719
8 TraesCS7A01G243600 chr6D 440013495 440016170 2675 True 808.000 1506 79.27900 494 2896 2 chr6D.!!$R4 2402
9 TraesCS7A01G243600 chr6D 466550317 466552251 1934 True 773.500 1406 81.80700 700 2623 2 chr6D.!!$R5 1923
10 TraesCS7A01G243600 chr3A 649952803 649954396 1593 False 1254.000 1254 81.01700 1031 2630 1 chr3A.!!$F1 1599
11 TraesCS7A01G243600 chr7D 206838743 206839835 1092 False 628.500 686 92.33300 2791 3727 2 chr7D.!!$F1 936
12 TraesCS7A01G243600 chr6A 52466207 52466980 773 False 571.000 571 80.35900 2124 2886 1 chr6A.!!$F1 762
13 TraesCS7A01G243600 chr6A 588427954 588428720 766 True 494.000 494 78.80700 2198 2967 1 chr6A.!!$R2 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.099259 GCAAGCTGCAATATCACGCA 59.901 50.0 1.02 0.00 44.26 5.24 F
956 5126 0.104487 CTGATCAGCTCAGGCGTCAT 59.896 55.0 10.38 0.00 46.52 3.06 F
1289 5784 0.740737 CAAATGCTTAAGCTCCCCGG 59.259 55.0 26.90 9.09 42.66 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 6439 0.108585 TGAGGCTCGGCTTTGAAAGT 59.891 50.0 10.42 0.0 0.00 2.66 R
2239 6901 0.110056 GGTGAACACATGCTTGAGCG 60.110 55.0 6.60 0.0 45.83 5.03 R
3095 8103 0.170561 CGCTACTACTCCAGCACGTT 59.829 55.0 0.00 0.0 37.66 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.522060 CGAACAGCAGTGTCTGGAC 58.478 57.895 15.82 9.71 38.36 4.02
66 67 0.946221 CGAACAGCAGTGTCTGGACC 60.946 60.000 15.82 0.00 38.36 4.46
67 68 0.946221 GAACAGCAGTGTCTGGACCG 60.946 60.000 15.82 0.00 38.36 4.79
68 69 2.740055 CAGCAGTGTCTGGACCGC 60.740 66.667 6.66 0.00 31.21 5.68
69 70 4.363990 AGCAGTGTCTGGACCGCG 62.364 66.667 0.00 0.00 31.21 6.46
70 71 4.357947 GCAGTGTCTGGACCGCGA 62.358 66.667 8.23 0.00 31.21 5.87
71 72 2.430921 CAGTGTCTGGACCGCGAC 60.431 66.667 8.23 0.17 0.00 5.19
72 73 2.597805 AGTGTCTGGACCGCGACT 60.598 61.111 8.23 0.00 0.00 4.18
73 74 2.201022 AGTGTCTGGACCGCGACTT 61.201 57.895 8.23 0.00 0.00 3.01
74 75 2.022129 GTGTCTGGACCGCGACTTG 61.022 63.158 8.23 0.00 0.00 3.16
75 76 3.112709 GTCTGGACCGCGACTTGC 61.113 66.667 8.23 0.00 41.47 4.01
76 77 3.611674 TCTGGACCGCGACTTGCA 61.612 61.111 8.23 1.48 46.97 4.08
77 78 3.114616 CTGGACCGCGACTTGCAG 61.115 66.667 8.23 8.65 46.97 4.41
78 79 4.680237 TGGACCGCGACTTGCAGG 62.680 66.667 8.23 0.00 46.97 4.85
84 85 4.704833 GCGACTTGCAGGCCCAGA 62.705 66.667 0.00 0.00 45.45 3.86
85 86 2.270205 CGACTTGCAGGCCCAGAT 59.730 61.111 0.00 0.00 0.00 2.90
86 87 1.522092 CGACTTGCAGGCCCAGATA 59.478 57.895 0.00 0.00 0.00 1.98
87 88 0.531532 CGACTTGCAGGCCCAGATAG 60.532 60.000 0.00 0.00 0.00 2.08
88 89 0.179034 GACTTGCAGGCCCAGATAGG 60.179 60.000 0.00 0.00 37.03 2.57
89 90 0.621571 ACTTGCAGGCCCAGATAGGA 60.622 55.000 0.00 0.00 41.22 2.94
90 91 0.179034 CTTGCAGGCCCAGATAGGAC 60.179 60.000 0.00 0.00 41.22 3.85
91 92 1.635817 TTGCAGGCCCAGATAGGACC 61.636 60.000 0.00 0.00 41.22 4.46
92 93 1.768077 GCAGGCCCAGATAGGACCT 60.768 63.158 0.00 0.00 41.22 3.85
93 94 0.471971 GCAGGCCCAGATAGGACCTA 60.472 60.000 3.00 3.00 41.22 3.08
94 95 1.638529 CAGGCCCAGATAGGACCTAG 58.361 60.000 7.43 0.00 41.22 3.02
95 96 0.489567 AGGCCCAGATAGGACCTAGG 59.510 60.000 7.41 7.41 41.22 3.02
96 97 0.487772 GGCCCAGATAGGACCTAGGA 59.512 60.000 17.98 0.00 41.22 2.94
97 98 1.132817 GGCCCAGATAGGACCTAGGAA 60.133 57.143 17.98 0.00 41.22 3.36
98 99 2.252714 GCCCAGATAGGACCTAGGAAG 58.747 57.143 17.98 0.00 41.22 3.46
99 100 2.896039 CCCAGATAGGACCTAGGAAGG 58.104 57.143 17.98 6.28 41.12 3.46
100 101 2.493687 CCCAGATAGGACCTAGGAAGGG 60.494 59.091 17.98 11.21 40.18 3.95
101 102 5.065361 CCCAGATAGGACCTAGGAAGGGT 62.065 56.522 17.98 0.00 40.18 4.34
137 138 3.490759 CACGCCACGGATCAGCAC 61.491 66.667 0.00 0.00 0.00 4.40
141 142 4.758251 CCACGGATCAGCACGCCA 62.758 66.667 0.00 0.00 0.00 5.69
142 143 3.490759 CACGGATCAGCACGCCAC 61.491 66.667 0.00 0.00 0.00 5.01
143 144 4.002506 ACGGATCAGCACGCCACA 62.003 61.111 0.00 0.00 0.00 4.17
144 145 3.190849 CGGATCAGCACGCCACAG 61.191 66.667 0.00 0.00 0.00 3.66
145 146 2.265739 GGATCAGCACGCCACAGA 59.734 61.111 0.00 0.00 0.00 3.41
146 147 1.812922 GGATCAGCACGCCACAGAG 60.813 63.158 0.00 0.00 0.00 3.35
147 148 2.435586 ATCAGCACGCCACAGAGC 60.436 61.111 0.00 0.00 0.00 4.09
148 149 3.965539 ATCAGCACGCCACAGAGCC 62.966 63.158 0.00 0.00 0.00 4.70
149 150 4.994471 CAGCACGCCACAGAGCCA 62.994 66.667 0.00 0.00 0.00 4.75
150 151 4.996434 AGCACGCCACAGAGCCAC 62.996 66.667 0.00 0.00 0.00 5.01
152 153 4.320456 CACGCCACAGAGCCACCT 62.320 66.667 0.00 0.00 0.00 4.00
153 154 2.603473 ACGCCACAGAGCCACCTA 60.603 61.111 0.00 0.00 0.00 3.08
154 155 2.185350 CGCCACAGAGCCACCTAG 59.815 66.667 0.00 0.00 0.00 3.02
155 156 2.650116 CGCCACAGAGCCACCTAGT 61.650 63.158 0.00 0.00 0.00 2.57
156 157 1.219393 GCCACAGAGCCACCTAGTC 59.781 63.158 0.00 0.00 0.00 2.59
157 158 1.513158 CCACAGAGCCACCTAGTCG 59.487 63.158 0.00 0.00 0.00 4.18
158 159 1.153745 CACAGAGCCACCTAGTCGC 60.154 63.158 0.00 0.00 0.00 5.19
159 160 1.304547 ACAGAGCCACCTAGTCGCT 60.305 57.895 0.00 0.00 31.76 4.93
160 161 1.316706 ACAGAGCCACCTAGTCGCTC 61.317 60.000 12.65 12.65 44.77 5.03
161 162 1.755008 AGAGCCACCTAGTCGCTCC 60.755 63.158 15.54 3.29 45.36 4.70
162 163 3.127352 GAGCCACCTAGTCGCTCCG 62.127 68.421 10.40 0.00 40.05 4.63
163 164 4.874977 GCCACCTAGTCGCTCCGC 62.875 72.222 0.00 0.00 0.00 5.54
164 165 4.208686 CCACCTAGTCGCTCCGCC 62.209 72.222 0.00 0.00 0.00 6.13
165 166 3.449227 CACCTAGTCGCTCCGCCA 61.449 66.667 0.00 0.00 0.00 5.69
166 167 2.678934 ACCTAGTCGCTCCGCCAA 60.679 61.111 0.00 0.00 0.00 4.52
167 168 2.280552 ACCTAGTCGCTCCGCCAAA 61.281 57.895 0.00 0.00 0.00 3.28
168 169 1.519455 CCTAGTCGCTCCGCCAAAG 60.519 63.158 0.00 0.00 0.00 2.77
169 170 1.519455 CTAGTCGCTCCGCCAAAGG 60.519 63.158 0.00 0.00 0.00 3.11
170 171 3.659089 TAGTCGCTCCGCCAAAGGC 62.659 63.158 0.00 0.00 46.75 4.35
192 193 4.070552 GCCGCCACCTCGTCTTCT 62.071 66.667 0.00 0.00 0.00 2.85
193 194 2.182030 CCGCCACCTCGTCTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
194 195 2.202492 CGCCACCTCGTCTTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
195 196 2.507324 GCCACCTCGTCTTCTCGC 60.507 66.667 0.00 0.00 0.00 5.03
196 197 2.182030 CCACCTCGTCTTCTCGCC 59.818 66.667 0.00 0.00 0.00 5.54
197 198 2.182030 CACCTCGTCTTCTCGCCC 59.818 66.667 0.00 0.00 0.00 6.13
198 199 3.441290 ACCTCGTCTTCTCGCCCG 61.441 66.667 0.00 0.00 0.00 6.13
199 200 4.856607 CCTCGTCTTCTCGCCCGC 62.857 72.222 0.00 0.00 0.00 6.13
200 201 4.116328 CTCGTCTTCTCGCCCGCA 62.116 66.667 0.00 0.00 0.00 5.69
201 202 4.116328 TCGTCTTCTCGCCCGCAG 62.116 66.667 0.00 0.00 0.00 5.18
202 203 4.116328 CGTCTTCTCGCCCGCAGA 62.116 66.667 0.00 0.00 0.00 4.26
203 204 2.507324 GTCTTCTCGCCCGCAGAC 60.507 66.667 0.00 0.00 0.00 3.51
204 205 3.760035 TCTTCTCGCCCGCAGACC 61.760 66.667 0.00 0.00 0.00 3.85
205 206 3.764466 CTTCTCGCCCGCAGACCT 61.764 66.667 0.00 0.00 0.00 3.85
206 207 3.708220 CTTCTCGCCCGCAGACCTC 62.708 68.421 0.00 0.00 0.00 3.85
230 231 3.112075 CGCACACCCTACGCTGTG 61.112 66.667 0.00 0.00 40.72 3.66
231 232 2.030562 GCACACCCTACGCTGTGT 59.969 61.111 0.00 0.00 46.14 3.72
232 233 1.597027 GCACACCCTACGCTGTGTT 60.597 57.895 0.00 0.00 42.82 3.32
233 234 1.566018 GCACACCCTACGCTGTGTTC 61.566 60.000 0.00 0.00 42.82 3.18
234 235 0.949105 CACACCCTACGCTGTGTTCC 60.949 60.000 0.00 0.00 42.82 3.62
235 236 1.119574 ACACCCTACGCTGTGTTCCT 61.120 55.000 0.00 0.00 42.82 3.36
236 237 0.389948 CACCCTACGCTGTGTTCCTC 60.390 60.000 0.00 0.00 0.00 3.71
237 238 1.218316 CCCTACGCTGTGTTCCTCC 59.782 63.158 0.00 0.00 0.00 4.30
238 239 1.153823 CCTACGCTGTGTTCCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
239 240 1.805945 CTACGCTGTGTTCCTCCGC 60.806 63.158 0.00 0.00 0.00 5.54
240 241 3.291101 TACGCTGTGTTCCTCCGCC 62.291 63.158 0.00 0.00 0.00 6.13
243 244 4.760047 CTGTGTTCCTCCGCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
245 246 4.452733 GTGTTCCTCCGCCCCGAG 62.453 72.222 0.00 0.00 0.00 4.63
246 247 4.689549 TGTTCCTCCGCCCCGAGA 62.690 66.667 0.00 0.00 30.97 4.04
247 248 4.144703 GTTCCTCCGCCCCGAGAC 62.145 72.222 0.00 0.00 30.97 3.36
248 249 4.689549 TTCCTCCGCCCCGAGACA 62.690 66.667 0.00 0.00 30.97 3.41
249 250 3.976490 TTCCTCCGCCCCGAGACAT 62.976 63.158 0.00 0.00 30.97 3.06
250 251 2.520982 CCTCCGCCCCGAGACATA 60.521 66.667 0.00 0.00 30.97 2.29
251 252 2.565645 CCTCCGCCCCGAGACATAG 61.566 68.421 0.00 0.00 30.97 2.23
252 253 3.214250 CTCCGCCCCGAGACATAGC 62.214 68.421 0.00 0.00 30.97 2.97
253 254 3.536917 CCGCCCCGAGACATAGCA 61.537 66.667 0.00 0.00 0.00 3.49
254 255 2.028190 CGCCCCGAGACATAGCAG 59.972 66.667 0.00 0.00 0.00 4.24
255 256 2.490148 CGCCCCGAGACATAGCAGA 61.490 63.158 0.00 0.00 0.00 4.26
256 257 1.810606 CGCCCCGAGACATAGCAGAT 61.811 60.000 0.00 0.00 0.00 2.90
257 258 0.320247 GCCCCGAGACATAGCAGATG 60.320 60.000 0.00 0.00 0.00 2.90
258 259 1.043816 CCCCGAGACATAGCAGATGT 58.956 55.000 4.08 4.08 34.52 3.06
259 260 1.269988 CCCCGAGACATAGCAGATGTG 60.270 57.143 8.83 0.00 31.52 3.21
268 269 2.894387 GCAGATGTGCGCCTCCTC 60.894 66.667 4.18 0.66 40.71 3.71
269 270 2.898738 CAGATGTGCGCCTCCTCT 59.101 61.111 4.18 3.24 0.00 3.69
270 271 1.521010 CAGATGTGCGCCTCCTCTG 60.521 63.158 4.18 12.17 0.00 3.35
271 272 2.894387 GATGTGCGCCTCCTCTGC 60.894 66.667 4.18 0.00 0.00 4.26
272 273 4.479993 ATGTGCGCCTCCTCTGCC 62.480 66.667 4.18 0.00 0.00 4.85
275 276 4.777854 TGCGCCTCCTCTGCCCTA 62.778 66.667 4.18 0.00 0.00 3.53
276 277 3.922640 GCGCCTCCTCTGCCCTAG 61.923 72.222 0.00 0.00 0.00 3.02
277 278 3.922640 CGCCTCCTCTGCCCTAGC 61.923 72.222 0.00 0.00 40.48 3.42
278 279 3.555324 GCCTCCTCTGCCCTAGCC 61.555 72.222 0.00 0.00 38.69 3.93
279 280 2.846754 CCTCCTCTGCCCTAGCCC 60.847 72.222 0.00 0.00 38.69 5.19
280 281 2.285180 CTCCTCTGCCCTAGCCCT 59.715 66.667 0.00 0.00 38.69 5.19
281 282 2.041508 TCCTCTGCCCTAGCCCTG 60.042 66.667 0.00 0.00 38.69 4.45
282 283 3.871395 CCTCTGCCCTAGCCCTGC 61.871 72.222 0.00 0.00 38.69 4.85
283 284 3.085947 CTCTGCCCTAGCCCTGCA 61.086 66.667 0.00 0.00 38.69 4.41
284 285 2.610546 TCTGCCCTAGCCCTGCAA 60.611 61.111 0.00 0.00 38.69 4.08
285 286 2.124403 CTGCCCTAGCCCTGCAAG 60.124 66.667 0.00 0.00 38.69 4.01
286 287 4.431131 TGCCCTAGCCCTGCAAGC 62.431 66.667 0.04 0.04 38.69 4.01
287 288 4.120755 GCCCTAGCCCTGCAAGCT 62.121 66.667 14.72 14.72 44.49 3.74
288 289 2.124403 CCCTAGCCCTGCAAGCTG 60.124 66.667 18.68 9.89 41.71 4.24
289 290 2.827642 CCTAGCCCTGCAAGCTGC 60.828 66.667 18.68 4.92 45.29 5.25
299 300 2.864028 GCAAGCTGCAATATCACGC 58.136 52.632 1.02 0.00 44.26 5.34
300 301 0.099259 GCAAGCTGCAATATCACGCA 59.901 50.000 1.02 0.00 44.26 5.24
301 302 1.268896 GCAAGCTGCAATATCACGCAT 60.269 47.619 1.02 0.00 44.26 4.73
302 303 2.381589 CAAGCTGCAATATCACGCATG 58.618 47.619 1.02 0.00 37.54 4.06
303 304 0.949397 AGCTGCAATATCACGCATGG 59.051 50.000 1.02 0.00 37.54 3.66
304 305 0.664761 GCTGCAATATCACGCATGGT 59.335 50.000 0.00 0.00 37.54 3.55
305 306 1.066002 GCTGCAATATCACGCATGGTT 59.934 47.619 0.00 0.00 37.54 3.67
306 307 2.855953 GCTGCAATATCACGCATGGTTC 60.856 50.000 0.00 0.00 37.54 3.62
307 308 2.615447 CTGCAATATCACGCATGGTTCT 59.385 45.455 0.00 0.00 37.54 3.01
308 309 2.613595 TGCAATATCACGCATGGTTCTC 59.386 45.455 0.00 0.00 31.95 2.87
309 310 2.874701 GCAATATCACGCATGGTTCTCT 59.125 45.455 0.00 0.00 0.00 3.10
310 311 3.059325 GCAATATCACGCATGGTTCTCTC 60.059 47.826 0.00 0.00 0.00 3.20
311 312 2.890808 TATCACGCATGGTTCTCTCC 57.109 50.000 0.00 0.00 0.00 3.71
312 313 1.198713 ATCACGCATGGTTCTCTCCT 58.801 50.000 0.00 0.00 0.00 3.69
313 314 1.847328 TCACGCATGGTTCTCTCCTA 58.153 50.000 0.00 0.00 0.00 2.94
314 315 2.176045 TCACGCATGGTTCTCTCCTAA 58.824 47.619 0.00 0.00 0.00 2.69
315 316 2.166459 TCACGCATGGTTCTCTCCTAAG 59.834 50.000 0.00 0.00 0.00 2.18
318 319 1.210478 GCATGGTTCTCTCCTAAGCCA 59.790 52.381 0.00 0.00 0.00 4.75
322 323 2.505819 TGGTTCTCTCCTAAGCCAATCC 59.494 50.000 0.00 0.00 0.00 3.01
337 338 0.769776 AATCCTGCGGATCCATCCCT 60.770 55.000 13.41 0.00 42.27 4.20
338 339 1.197430 ATCCTGCGGATCCATCCCTC 61.197 60.000 13.41 0.00 44.24 4.30
343 344 2.527875 GGATCCATCCCTCCGGCT 60.528 66.667 6.95 0.00 41.20 5.52
383 384 4.484872 GCAACCGCCTACCCCTCC 62.485 72.222 0.00 0.00 0.00 4.30
385 386 4.342086 AACCGCCTACCCCTCCCA 62.342 66.667 0.00 0.00 0.00 4.37
387 388 3.242291 CCGCCTACCCCTCCCATC 61.242 72.222 0.00 0.00 0.00 3.51
390 391 1.696314 GCCTACCCCTCCCATCCAA 60.696 63.158 0.00 0.00 0.00 3.53
529 577 1.494296 TGGGCTATTATGCTTGGCTGA 59.506 47.619 0.00 0.00 0.00 4.26
604 652 5.759763 GTCCTTTTCCTTGTGCAATTTGAAT 59.240 36.000 0.00 0.00 0.00 2.57
637 685 1.260297 GATTTTGGTTTGTGCGGCAAC 59.740 47.619 3.23 0.00 36.72 4.17
656 706 4.512571 GCAACCGTAGTCAAAAGGAGTAAA 59.487 41.667 0.00 0.00 33.28 2.01
657 707 5.559608 GCAACCGTAGTCAAAAGGAGTAAAC 60.560 44.000 0.00 0.00 33.28 2.01
670 720 8.565416 CAAAAGGAGTAAACTTTATTCGGAGTT 58.435 33.333 0.00 0.00 37.18 3.01
673 723 6.653740 AGGAGTAAACTTTATTCGGAGTTTGG 59.346 38.462 10.72 0.00 43.70 3.28
676 726 7.163441 AGTAAACTTTATTCGGAGTTTGGCTA 58.837 34.615 10.72 0.00 43.70 3.93
760 4686 3.498777 GCCGGCCTCAATAAATAGAGAAC 59.501 47.826 18.11 0.00 33.74 3.01
762 4688 5.368989 CCGGCCTCAATAAATAGAGAACTT 58.631 41.667 0.00 0.00 33.74 2.66
764 4690 6.049149 CGGCCTCAATAAATAGAGAACTTGA 58.951 40.000 0.00 0.00 33.74 3.02
780 4710 1.870941 TTGAGGAGTAGGAGGGGCGA 61.871 60.000 0.00 0.00 0.00 5.54
800 4730 4.270084 GCGATTGTCGATCCAATAAGTTGA 59.730 41.667 3.20 0.00 43.74 3.18
823 4753 0.315568 CCCCGATTTTGTTTTCGCCA 59.684 50.000 0.00 0.00 34.10 5.69
843 4773 3.932710 CCAGCGATTAGTCTGCTTTGTTA 59.067 43.478 2.72 0.00 33.89 2.41
850 4780 1.669760 TCTGCTTTGTTACGCCGGG 60.670 57.895 2.18 0.00 0.00 5.73
931 5101 3.270027 CGTTGCCACAGATCCAATAAGA 58.730 45.455 0.00 0.00 0.00 2.10
933 5103 4.024556 CGTTGCCACAGATCCAATAAGATC 60.025 45.833 0.00 0.00 42.57 2.75
955 5125 1.514553 CTGATCAGCTCAGGCGTCA 59.485 57.895 10.38 0.00 46.52 4.35
956 5126 0.104487 CTGATCAGCTCAGGCGTCAT 59.896 55.000 10.38 0.00 46.52 3.06
958 5128 1.756538 TGATCAGCTCAGGCGTCATAA 59.243 47.619 0.00 0.00 44.37 1.90
966 5136 3.525537 CTCAGGCGTCATAACATCAAGT 58.474 45.455 0.00 0.00 0.00 3.16
995 5231 5.880054 CAAGACCACTTGTTTATCCGATT 57.120 39.130 0.00 0.00 45.73 3.34
1010 5298 2.092968 TCCGATTAGCCATGACAAAGCT 60.093 45.455 7.62 7.62 40.66 3.74
1029 5317 2.476185 GCTAAAAATGCATCGCAGACGT 60.476 45.455 0.00 0.00 43.65 4.34
1079 5519 4.578516 TGATTGATGTTTGTCCTTCACGTT 59.421 37.500 0.00 0.00 0.00 3.99
1096 5536 3.057806 CACGTTAGGTTCATCCCCAAAAC 60.058 47.826 0.00 0.00 36.75 2.43
1111 5600 7.466746 TCCCCAAAACTCTGATTATTTCTTG 57.533 36.000 0.00 0.00 0.00 3.02
1138 5630 4.451774 TCCAGCTAAATGCAATGCAAAAAC 59.548 37.500 13.45 1.05 43.62 2.43
1221 5716 3.173151 TGACCTTCTGCTCAACATCCTA 58.827 45.455 0.00 0.00 0.00 2.94
1289 5784 0.740737 CAAATGCTTAAGCTCCCCGG 59.259 55.000 26.90 9.09 42.66 5.73
1335 5830 5.454966 AGTTGTAGTTCCATTCCAGGTTTT 58.545 37.500 0.00 0.00 0.00 2.43
1336 5831 5.897250 AGTTGTAGTTCCATTCCAGGTTTTT 59.103 36.000 0.00 0.00 0.00 1.94
1373 5874 1.820010 ATCAGCCTCAGTGACGTGCA 61.820 55.000 0.00 0.00 0.00 4.57
1440 5941 1.110442 CAAGGAGCGAGGAGATCACT 58.890 55.000 0.00 0.00 36.90 3.41
1450 5951 4.297510 CGAGGAGATCACTATCAGCAAAG 58.702 47.826 0.00 0.00 34.28 2.77
1475 5976 2.029838 ATCAGATTCGTCTTGGTGCC 57.970 50.000 0.00 0.00 0.00 5.01
1593 6094 3.695606 TGGTGCTCTCCTGCCGAC 61.696 66.667 0.00 0.00 0.00 4.79
1603 6104 2.125912 CTGCCGACTTCCTCCACG 60.126 66.667 0.00 0.00 0.00 4.94
1755 6259 2.481185 GGAGTCATTGCGTTTAACCGAA 59.519 45.455 0.00 0.00 0.00 4.30
1758 6262 3.500680 AGTCATTGCGTTTAACCGAATGT 59.499 39.130 0.00 0.00 32.39 2.71
1761 6265 4.155099 TCATTGCGTTTAACCGAATGTGAT 59.845 37.500 0.00 0.00 32.39 3.06
1762 6266 3.463533 TGCGTTTAACCGAATGTGATG 57.536 42.857 0.00 0.00 0.00 3.07
1765 6269 3.816091 CGTTTAACCGAATGTGATGCAA 58.184 40.909 0.00 0.00 0.00 4.08
1774 6278 3.058432 CGAATGTGATGCAAGGATCCATC 60.058 47.826 15.82 8.67 38.60 3.51
1828 6332 1.967066 AGCTTGAGATCGACTATGGGG 59.033 52.381 0.00 0.00 0.00 4.96
1868 6372 6.692486 AGCTGATATATCTACCAAAACTCCG 58.308 40.000 13.79 0.00 0.00 4.63
1943 6450 4.379339 TTGTACCACAACTTTCAAAGCC 57.621 40.909 0.00 0.00 32.34 4.35
1963 6470 1.608025 CGAGCCTCAGTAAAACTGGCA 60.608 52.381 7.18 0.00 45.94 4.92
1970 6477 1.001815 CAGTAAAACTGGCACCCGTTG 60.002 52.381 0.00 0.00 42.35 4.10
2017 6524 4.013050 GCTTCTTGCTAATGTTCCTTCCT 58.987 43.478 0.00 0.00 38.95 3.36
2168 6826 5.412594 TCTGCCAGTTGAGAATGTGATTTAC 59.587 40.000 0.00 0.00 0.00 2.01
2169 6827 5.316167 TGCCAGTTGAGAATGTGATTTACT 58.684 37.500 0.00 0.00 0.00 2.24
2180 6838 9.530129 GAGAATGTGATTTACTTGAAACTTACG 57.470 33.333 0.00 0.00 0.00 3.18
2239 6901 1.937546 CTGCCAGAATGCCCGAAACC 61.938 60.000 0.00 0.00 31.97 3.27
2248 6910 2.668212 CCCGAAACCGCTCAAGCA 60.668 61.111 2.50 0.00 42.21 3.91
2253 6915 0.593128 GAAACCGCTCAAGCATGTGT 59.407 50.000 2.50 0.00 42.21 3.72
2257 6919 0.110056 CCGCTCAAGCATGTGTTCAC 60.110 55.000 2.50 0.00 42.21 3.18
2288 6950 2.544685 CACGTGAATCTGGACCATCTC 58.455 52.381 10.90 0.00 0.00 2.75
2298 6960 0.833949 GGACCATCTCCCTGAAGGAC 59.166 60.000 0.00 0.00 40.93 3.85
2308 6970 3.437213 TCCCTGAAGGACGTGATTTAGA 58.563 45.455 0.00 0.00 40.93 2.10
2400 7065 4.332543 GGTGCATAATGATGACAGACGAAA 59.667 41.667 0.00 0.00 34.73 3.46
2434 7099 6.133356 AGGAAAATGGTTACTGTGAAAAGGA 58.867 36.000 0.00 0.00 0.00 3.36
2435 7100 6.265422 AGGAAAATGGTTACTGTGAAAAGGAG 59.735 38.462 0.00 0.00 0.00 3.69
2475 7140 1.243342 TGCCCCTGATTTCAAGCACG 61.243 55.000 0.00 0.00 0.00 5.34
2542 7207 3.746940 ACTTTGTGCGGTACATTAGGTT 58.253 40.909 0.00 0.00 39.48 3.50
2550 7215 3.735820 GCGGTACATTAGGTTCGTCATGA 60.736 47.826 0.00 0.00 0.00 3.07
2561 7226 1.075542 TCGTCATGAAACATGCGGTC 58.924 50.000 19.24 0.00 0.00 4.79
2636 7313 0.107831 TGGGTCTTGAGGTTTGTCCG 59.892 55.000 0.00 0.00 41.99 4.79
2648 7325 2.864343 GGTTTGTCCGTCAAGATATCCG 59.136 50.000 0.00 0.00 37.35 4.18
2654 7331 0.663568 CGTCAAGATATCCGCGGACC 60.664 60.000 33.75 22.15 0.00 4.46
2680 7357 1.742268 GAAGAGGAGGCAGACAATTGC 59.258 52.381 5.05 0.00 43.34 3.56
2708 7468 4.527509 TGGTTTGACTTCACAGCAAAAA 57.472 36.364 0.00 0.00 32.03 1.94
2861 7643 6.485648 GTCTGTACTCTTGCTTTCCCTTAAAA 59.514 38.462 0.00 0.00 0.00 1.52
2906 7690 8.882736 CCCAATTGAGGAAATATTTTAAGTTGC 58.117 33.333 7.12 0.00 0.00 4.17
2928 7712 2.071688 CAGTATATCTGCGGTGCCTC 57.928 55.000 0.00 0.00 37.36 4.70
2976 7769 8.422973 GCTTGATGCATTGGAAATTTATGTTA 57.577 30.769 0.00 0.00 42.31 2.41
2983 7776 9.545105 TGCATTGGAAATTTATGTTATTCATCC 57.455 29.630 0.00 0.00 37.91 3.51
3080 8088 8.644374 AGTTCAAGTACTTAATCTCTCTCTGT 57.356 34.615 8.04 0.00 0.00 3.41
3083 8091 8.199176 TCAAGTACTTAATCTCTCTCTGTACG 57.801 38.462 8.04 0.00 35.40 3.67
3085 8093 9.096160 CAAGTACTTAATCTCTCTCTGTACGTA 57.904 37.037 8.04 0.00 35.40 3.57
3086 8094 9.664332 AAGTACTTAATCTCTCTCTGTACGTAA 57.336 33.333 6.26 0.00 35.40 3.18
3087 8095 9.664332 AGTACTTAATCTCTCTCTGTACGTAAA 57.336 33.333 0.00 0.00 35.40 2.01
3088 8096 9.919348 GTACTTAATCTCTCTCTGTACGTAAAG 57.081 37.037 6.41 6.41 0.00 1.85
3089 8097 8.789825 ACTTAATCTCTCTCTGTACGTAAAGA 57.210 34.615 14.73 14.73 0.00 2.52
3090 8098 8.885722 ACTTAATCTCTCTCTGTACGTAAAGAG 58.114 37.037 29.69 29.69 41.13 2.85
3091 8099 9.100554 CTTAATCTCTCTCTGTACGTAAAGAGA 57.899 37.037 33.37 33.37 45.17 3.10
3092 8100 9.616156 TTAATCTCTCTCTGTACGTAAAGAGAT 57.384 33.333 34.92 25.33 46.99 2.75
3093 8101 6.912203 TCTCTCTCTGTACGTAAAGAGATG 57.088 41.667 34.92 29.39 45.93 2.90
3094 8102 5.818336 TCTCTCTCTGTACGTAAAGAGATGG 59.182 44.000 34.92 29.02 45.93 3.51
3095 8103 5.742063 TCTCTCTGTACGTAAAGAGATGGA 58.258 41.667 34.92 28.12 45.93 3.41
3096 8104 6.178324 TCTCTCTGTACGTAAAGAGATGGAA 58.822 40.000 34.92 22.04 45.93 3.53
3097 8105 6.093771 TCTCTCTGTACGTAAAGAGATGGAAC 59.906 42.308 34.92 7.72 45.93 3.62
3098 8106 4.978186 TCTGTACGTAAAGAGATGGAACG 58.022 43.478 11.57 0.00 39.37 3.95
3099 8107 7.514697 TCTCTGTACGTAAAGAGATGGAACGT 61.515 42.308 32.64 4.18 43.09 3.99
3100 8108 4.478699 TGTACGTAAAGAGATGGAACGTG 58.521 43.478 8.88 0.00 45.44 4.49
3111 8119 1.913778 TGGAACGTGCTGGAGTAGTA 58.086 50.000 0.00 0.00 0.00 1.82
3113 8121 1.469423 GGAACGTGCTGGAGTAGTAGC 60.469 57.143 0.00 0.00 40.29 3.58
3161 8278 1.676967 GTTGCTGAAGCCTCCCAGG 60.677 63.158 0.00 0.00 41.18 4.45
3162 8279 2.156098 TTGCTGAAGCCTCCCAGGT 61.156 57.895 0.00 0.00 41.18 4.00
3163 8280 2.129555 TTGCTGAAGCCTCCCAGGTC 62.130 60.000 0.00 0.00 41.18 3.85
3164 8281 2.993853 CTGAAGCCTCCCAGGTCC 59.006 66.667 0.00 0.00 37.80 4.46
3165 8282 2.610859 TGAAGCCTCCCAGGTCCC 60.611 66.667 0.00 0.00 37.80 4.46
3166 8283 2.610859 GAAGCCTCCCAGGTCCCA 60.611 66.667 0.00 0.00 37.80 4.37
3167 8284 2.612115 AAGCCTCCCAGGTCCCAG 60.612 66.667 0.00 0.00 37.80 4.45
3184 8301 2.597510 GCAAGGGAGGCGTTGGTT 60.598 61.111 0.00 0.00 0.00 3.67
3206 8323 3.957260 CTGAACAGCTGGGTGTCG 58.043 61.111 19.93 3.20 0.00 4.35
3254 8371 0.957395 AATGTGCAGAGGCCGTGAAG 60.957 55.000 12.02 0.00 40.13 3.02
3282 8399 1.066502 TGCAGGACATAAAGCTGCGTA 60.067 47.619 0.00 0.00 43.22 4.42
3286 8403 3.062639 CAGGACATAAAGCTGCGTAGTTG 59.937 47.826 1.53 0.00 0.00 3.16
3325 8442 3.382865 TGGCTGTGATGAGTACTCTGATC 59.617 47.826 23.01 17.84 35.42 2.92
3358 8475 4.516698 GCATGGGATTAATGTACCTCTGTG 59.483 45.833 0.00 0.00 0.00 3.66
3361 8478 5.928976 TGGGATTAATGTACCTCTGTGATG 58.071 41.667 0.00 0.00 0.00 3.07
3362 8479 5.665360 TGGGATTAATGTACCTCTGTGATGA 59.335 40.000 0.00 0.00 0.00 2.92
3363 8480 6.183361 TGGGATTAATGTACCTCTGTGATGAG 60.183 42.308 0.00 0.00 0.00 2.90
3364 8481 6.183361 GGGATTAATGTACCTCTGTGATGAGT 60.183 42.308 0.00 0.00 32.50 3.41
3366 8483 8.589338 GGATTAATGTACCTCTGTGATGAGTAT 58.411 37.037 0.00 0.00 32.50 2.12
3367 8484 9.988815 GATTAATGTACCTCTGTGATGAGTATT 57.011 33.333 0.00 0.00 32.50 1.89
3409 8708 5.880054 ATGATAACACAACACTAACCTGC 57.120 39.130 0.00 0.00 0.00 4.85
3433 8732 4.065088 TCATTTCACGCACTTAAGCTTCT 58.935 39.130 0.00 0.00 0.00 2.85
3471 8770 6.015010 CCCAAGATCTAAGACATACCGAGATT 60.015 42.308 0.00 0.00 0.00 2.40
3509 8808 1.839994 CATACAGACTGGTCCATGGGT 59.160 52.381 13.02 0.62 0.00 4.51
3606 8905 1.679944 CCATTGCTCCCACACAGGTAG 60.680 57.143 0.00 0.00 34.66 3.18
3607 8906 1.003580 CATTGCTCCCACACAGGTAGT 59.996 52.381 0.00 0.00 34.66 2.73
3608 8907 2.018355 TTGCTCCCACACAGGTAGTA 57.982 50.000 0.00 0.00 34.66 1.82
3613 8912 3.705072 GCTCCCACACAGGTAGTACTATT 59.295 47.826 5.75 0.00 34.66 1.73
3633 8932 0.185901 TAGGCCTGGGAATGAATGCC 59.814 55.000 17.99 0.00 40.67 4.40
3634 8933 2.136229 GGCCTGGGAATGAATGCCC 61.136 63.158 0.00 0.00 44.93 5.36
3647 8946 2.309613 GAATGCCCATCACATAGCCAA 58.690 47.619 0.00 0.00 0.00 4.52
3659 8958 0.035056 ATAGCCAAGCCGCTTCACTT 60.035 50.000 1.56 0.00 40.39 3.16
3706 9005 4.608269 TGCATATCAAGGATTTTGACCCA 58.392 39.130 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.171940 CTGCTGTTCGCGTCAAGC 59.828 61.111 18.23 18.23 43.27 4.01
40 41 1.202568 CACTGCTGTTCGCGTCAAG 59.797 57.895 5.77 2.98 43.27 3.02
41 42 1.487452 GACACTGCTGTTCGCGTCAA 61.487 55.000 5.77 0.00 43.27 3.18
42 43 1.949133 GACACTGCTGTTCGCGTCA 60.949 57.895 5.77 6.28 43.27 4.35
43 44 1.661821 AGACACTGCTGTTCGCGTC 60.662 57.895 5.77 1.06 43.27 5.19
44 45 1.951130 CAGACACTGCTGTTCGCGT 60.951 57.895 5.77 0.00 43.27 6.01
45 46 2.661566 CCAGACACTGCTGTTCGCG 61.662 63.158 0.00 0.00 43.27 5.87
46 47 1.300931 TCCAGACACTGCTGTTCGC 60.301 57.895 0.00 0.00 39.77 4.70
47 48 0.946221 GGTCCAGACACTGCTGTTCG 60.946 60.000 0.00 0.00 34.06 3.95
48 49 0.946221 CGGTCCAGACACTGCTGTTC 60.946 60.000 0.00 0.00 34.06 3.18
49 50 1.069765 CGGTCCAGACACTGCTGTT 59.930 57.895 0.00 0.00 34.06 3.16
50 51 2.737180 CGGTCCAGACACTGCTGT 59.263 61.111 0.00 0.00 34.06 4.40
51 52 2.740055 GCGGTCCAGACACTGCTG 60.740 66.667 0.00 0.00 44.19 4.41
52 53 4.363990 CGCGGTCCAGACACTGCT 62.364 66.667 0.00 0.00 45.22 4.24
53 54 4.357947 TCGCGGTCCAGACACTGC 62.358 66.667 6.13 0.02 44.14 4.40
54 55 2.421877 AAGTCGCGGTCCAGACACTG 62.422 60.000 6.13 0.00 39.67 3.66
55 56 2.201022 AAGTCGCGGTCCAGACACT 61.201 57.895 6.13 0.00 39.67 3.55
56 57 2.022129 CAAGTCGCGGTCCAGACAC 61.022 63.158 6.13 0.00 39.67 3.67
57 58 2.338620 CAAGTCGCGGTCCAGACA 59.661 61.111 6.13 0.00 39.67 3.41
58 59 3.112709 GCAAGTCGCGGTCCAGAC 61.113 66.667 6.13 6.41 37.63 3.51
59 60 3.573772 CTGCAAGTCGCGGTCCAGA 62.574 63.158 6.13 0.00 46.97 3.86
60 61 3.114616 CTGCAAGTCGCGGTCCAG 61.115 66.667 6.13 2.49 46.97 3.86
61 62 4.680237 CCTGCAAGTCGCGGTCCA 62.680 66.667 6.13 0.00 46.47 4.02
67 68 2.593468 TATCTGGGCCTGCAAGTCGC 62.593 60.000 4.53 0.00 42.89 5.19
68 69 0.531532 CTATCTGGGCCTGCAAGTCG 60.532 60.000 4.53 0.00 0.00 4.18
69 70 0.179034 CCTATCTGGGCCTGCAAGTC 60.179 60.000 4.53 0.00 0.00 3.01
70 71 0.621571 TCCTATCTGGGCCTGCAAGT 60.622 55.000 4.53 0.00 36.20 3.16
71 72 0.179034 GTCCTATCTGGGCCTGCAAG 60.179 60.000 4.53 5.02 33.37 4.01
72 73 1.915228 GTCCTATCTGGGCCTGCAA 59.085 57.895 4.53 0.00 33.37 4.08
73 74 3.647367 GTCCTATCTGGGCCTGCA 58.353 61.111 4.53 0.00 33.37 4.41
78 79 2.252714 CTTCCTAGGTCCTATCTGGGC 58.747 57.143 9.08 0.00 40.45 5.36
79 80 2.493687 CCCTTCCTAGGTCCTATCTGGG 60.494 59.091 9.08 5.67 40.19 4.45
80 81 2.180308 ACCCTTCCTAGGTCCTATCTGG 59.820 54.545 9.08 0.00 40.19 3.86
81 82 3.502356 GACCCTTCCTAGGTCCTATCTG 58.498 54.545 9.08 0.00 46.85 2.90
82 83 3.907459 GACCCTTCCTAGGTCCTATCT 57.093 52.381 9.08 0.00 46.85 1.98
89 90 2.758737 CGCGGACCCTTCCTAGGT 60.759 66.667 9.08 0.00 40.23 3.08
90 91 4.222847 GCGCGGACCCTTCCTAGG 62.223 72.222 8.83 0.82 40.23 3.02
91 92 4.222847 GGCGCGGACCCTTCCTAG 62.223 72.222 8.83 0.00 40.23 3.02
120 121 3.490759 GTGCTGATCCGTGGCGTG 61.491 66.667 0.00 0.00 0.00 5.34
124 125 4.758251 TGGCGTGCTGATCCGTGG 62.758 66.667 0.00 0.00 0.00 4.94
125 126 3.490759 GTGGCGTGCTGATCCGTG 61.491 66.667 0.00 0.00 0.00 4.94
126 127 3.939837 CTGTGGCGTGCTGATCCGT 62.940 63.158 0.00 0.00 0.00 4.69
127 128 3.190849 CTGTGGCGTGCTGATCCG 61.191 66.667 0.00 0.00 0.00 4.18
128 129 1.812922 CTCTGTGGCGTGCTGATCC 60.813 63.158 0.00 0.00 0.00 3.36
129 130 2.459442 GCTCTGTGGCGTGCTGATC 61.459 63.158 0.00 0.00 0.00 2.92
130 131 2.435586 GCTCTGTGGCGTGCTGAT 60.436 61.111 0.00 0.00 0.00 2.90
131 132 4.687215 GGCTCTGTGGCGTGCTGA 62.687 66.667 0.00 0.00 0.00 4.26
132 133 4.994471 TGGCTCTGTGGCGTGCTG 62.994 66.667 0.00 0.00 45.14 4.41
133 134 4.996434 GTGGCTCTGTGGCGTGCT 62.996 66.667 0.00 0.00 45.14 4.40
135 136 2.842394 CTAGGTGGCTCTGTGGCGTG 62.842 65.000 0.00 0.00 45.14 5.34
136 137 2.603473 TAGGTGGCTCTGTGGCGT 60.603 61.111 0.00 0.00 45.14 5.68
137 138 2.185350 CTAGGTGGCTCTGTGGCG 59.815 66.667 0.00 0.00 45.14 5.69
138 139 1.219393 GACTAGGTGGCTCTGTGGC 59.781 63.158 0.00 0.00 42.18 5.01
139 140 1.513158 CGACTAGGTGGCTCTGTGG 59.487 63.158 0.00 0.00 0.00 4.17
140 141 1.153745 GCGACTAGGTGGCTCTGTG 60.154 63.158 0.00 0.00 34.54 3.66
141 142 1.304547 AGCGACTAGGTGGCTCTGT 60.305 57.895 1.55 0.00 43.70 3.41
142 143 3.609703 AGCGACTAGGTGGCTCTG 58.390 61.111 1.55 0.00 43.70 3.35
175 176 3.991536 GAGAAGACGAGGTGGCGGC 62.992 68.421 0.00 0.00 40.32 6.53
176 177 2.182030 GAGAAGACGAGGTGGCGG 59.818 66.667 0.00 0.00 35.12 6.13
177 178 2.202492 CGAGAAGACGAGGTGGCG 60.202 66.667 0.00 0.00 35.09 5.69
178 179 2.507324 GCGAGAAGACGAGGTGGC 60.507 66.667 0.00 0.00 35.09 5.01
179 180 2.182030 GGCGAGAAGACGAGGTGG 59.818 66.667 0.00 0.00 35.09 4.61
180 181 2.182030 GGGCGAGAAGACGAGGTG 59.818 66.667 0.00 0.00 35.09 4.00
181 182 3.441290 CGGGCGAGAAGACGAGGT 61.441 66.667 0.00 0.00 35.09 3.85
182 183 4.856607 GCGGGCGAGAAGACGAGG 62.857 72.222 0.00 0.00 35.09 4.63
183 184 4.116328 TGCGGGCGAGAAGACGAG 62.116 66.667 0.00 0.00 35.09 4.18
184 185 4.116328 CTGCGGGCGAGAAGACGA 62.116 66.667 0.00 0.00 35.09 4.20
185 186 4.116328 TCTGCGGGCGAGAAGACG 62.116 66.667 0.00 0.00 0.00 4.18
186 187 2.507324 GTCTGCGGGCGAGAAGAC 60.507 66.667 4.32 4.32 32.92 3.01
187 188 3.760035 GGTCTGCGGGCGAGAAGA 61.760 66.667 0.00 0.00 0.00 2.87
188 189 3.708220 GAGGTCTGCGGGCGAGAAG 62.708 68.421 0.00 0.00 0.00 2.85
189 190 3.760035 GAGGTCTGCGGGCGAGAA 61.760 66.667 0.00 0.00 0.00 2.87
217 218 0.389948 GAGGAACACAGCGTAGGGTG 60.390 60.000 12.77 12.77 46.91 4.61
218 219 1.542187 GGAGGAACACAGCGTAGGGT 61.542 60.000 0.00 0.00 0.00 4.34
219 220 1.218316 GGAGGAACACAGCGTAGGG 59.782 63.158 0.00 0.00 0.00 3.53
220 221 1.153823 CGGAGGAACACAGCGTAGG 60.154 63.158 0.00 0.00 0.00 3.18
221 222 1.805945 GCGGAGGAACACAGCGTAG 60.806 63.158 0.00 0.00 29.04 3.51
222 223 2.260434 GCGGAGGAACACAGCGTA 59.740 61.111 0.00 0.00 29.04 4.42
223 224 4.681978 GGCGGAGGAACACAGCGT 62.682 66.667 0.00 0.00 41.16 5.07
226 227 4.760047 CGGGGCGGAGGAACACAG 62.760 72.222 0.00 0.00 0.00 3.66
228 229 4.452733 CTCGGGGCGGAGGAACAC 62.453 72.222 0.00 0.00 0.00 3.32
229 230 4.689549 TCTCGGGGCGGAGGAACA 62.690 66.667 4.63 0.00 34.74 3.18
230 231 4.144703 GTCTCGGGGCGGAGGAAC 62.145 72.222 4.63 0.00 34.74 3.62
231 232 2.577020 TATGTCTCGGGGCGGAGGAA 62.577 60.000 4.63 0.00 34.74 3.36
232 233 2.978298 CTATGTCTCGGGGCGGAGGA 62.978 65.000 4.63 0.00 34.74 3.71
233 234 2.520982 TATGTCTCGGGGCGGAGG 60.521 66.667 4.63 0.00 34.74 4.30
234 235 3.043419 CTATGTCTCGGGGCGGAG 58.957 66.667 0.00 0.00 35.32 4.63
235 236 3.224324 GCTATGTCTCGGGGCGGA 61.224 66.667 0.00 0.00 0.00 5.54
236 237 3.506059 CTGCTATGTCTCGGGGCGG 62.506 68.421 0.00 0.00 0.00 6.13
237 238 1.810606 ATCTGCTATGTCTCGGGGCG 61.811 60.000 0.00 0.00 0.00 6.13
238 239 0.320247 CATCTGCTATGTCTCGGGGC 60.320 60.000 0.00 0.00 0.00 5.80
239 240 1.043816 ACATCTGCTATGTCTCGGGG 58.956 55.000 0.06 0.00 0.00 5.73
240 241 1.871408 GCACATCTGCTATGTCTCGGG 60.871 57.143 2.70 0.00 40.63 5.14
241 242 1.495878 GCACATCTGCTATGTCTCGG 58.504 55.000 2.70 0.00 40.63 4.63
242 243 1.126890 CGCACATCTGCTATGTCTCG 58.873 55.000 2.70 6.10 41.77 4.04
243 244 0.857935 GCGCACATCTGCTATGTCTC 59.142 55.000 0.30 0.00 41.77 3.36
244 245 0.531532 GGCGCACATCTGCTATGTCT 60.532 55.000 10.83 0.00 41.77 3.41
245 246 0.531532 AGGCGCACATCTGCTATGTC 60.532 55.000 10.83 0.00 41.77 3.06
246 247 0.531532 GAGGCGCACATCTGCTATGT 60.532 55.000 10.83 0.06 41.77 2.29
247 248 1.226686 GGAGGCGCACATCTGCTATG 61.227 60.000 10.83 0.00 41.77 2.23
248 249 1.070445 GGAGGCGCACATCTGCTAT 59.930 57.895 10.83 0.00 41.77 2.97
249 250 2.021068 GAGGAGGCGCACATCTGCTA 62.021 60.000 10.83 0.00 41.77 3.49
250 251 3.382803 GAGGAGGCGCACATCTGCT 62.383 63.158 10.83 7.53 41.77 4.24
251 252 2.894387 GAGGAGGCGCACATCTGC 60.894 66.667 10.83 1.55 40.38 4.26
252 253 1.521010 CAGAGGAGGCGCACATCTG 60.521 63.158 24.93 24.93 39.19 2.90
253 254 2.898738 CAGAGGAGGCGCACATCT 59.101 61.111 10.83 12.50 0.00 2.90
254 255 2.894387 GCAGAGGAGGCGCACATC 60.894 66.667 10.83 10.16 0.00 3.06
255 256 4.479993 GGCAGAGGAGGCGCACAT 62.480 66.667 10.83 0.00 0.00 3.21
258 259 4.777854 TAGGGCAGAGGAGGCGCA 62.778 66.667 10.83 0.00 45.58 6.09
259 260 3.922640 CTAGGGCAGAGGAGGCGC 61.923 72.222 0.00 0.00 43.74 6.53
260 261 3.922640 GCTAGGGCAGAGGAGGCG 61.923 72.222 0.00 0.00 38.54 5.52
261 262 3.555324 GGCTAGGGCAGAGGAGGC 61.555 72.222 0.00 0.00 40.87 4.70
262 263 2.846754 GGGCTAGGGCAGAGGAGG 60.847 72.222 0.00 0.00 40.87 4.30
263 264 2.139484 CAGGGCTAGGGCAGAGGAG 61.139 68.421 0.00 0.00 40.87 3.69
264 265 2.041508 CAGGGCTAGGGCAGAGGA 60.042 66.667 0.00 0.00 40.87 3.71
265 266 3.871395 GCAGGGCTAGGGCAGAGG 61.871 72.222 0.00 0.00 40.87 3.69
266 267 2.605854 CTTGCAGGGCTAGGGCAGAG 62.606 65.000 0.00 0.00 38.97 3.35
267 268 2.610546 TTGCAGGGCTAGGGCAGA 60.611 61.111 0.00 0.00 38.97 4.26
268 269 2.124403 CTTGCAGGGCTAGGGCAG 60.124 66.667 0.00 0.00 38.97 4.85
269 270 4.431131 GCTTGCAGGGCTAGGGCA 62.431 66.667 0.00 0.00 40.87 5.36
270 271 4.120755 AGCTTGCAGGGCTAGGGC 62.121 66.667 13.39 0.00 38.36 5.19
271 272 2.124403 CAGCTTGCAGGGCTAGGG 60.124 66.667 14.37 1.66 38.03 3.53
272 273 2.827642 GCAGCTTGCAGGGCTAGG 60.828 66.667 14.37 6.39 44.26 3.02
281 282 0.099259 TGCGTGATATTGCAGCTTGC 59.901 50.000 0.00 1.70 45.29 4.01
282 283 2.381589 CATGCGTGATATTGCAGCTTG 58.618 47.619 0.00 0.00 45.52 4.01
283 284 1.335810 CCATGCGTGATATTGCAGCTT 59.664 47.619 7.72 0.00 45.52 3.74
284 285 0.949397 CCATGCGTGATATTGCAGCT 59.051 50.000 7.72 0.00 45.52 4.24
285 286 0.664761 ACCATGCGTGATATTGCAGC 59.335 50.000 7.72 0.00 45.52 5.25
286 287 2.615447 AGAACCATGCGTGATATTGCAG 59.385 45.455 7.72 0.00 45.52 4.41
287 288 2.613595 GAGAACCATGCGTGATATTGCA 59.386 45.455 7.72 1.44 46.51 4.08
288 289 2.874701 AGAGAACCATGCGTGATATTGC 59.125 45.455 7.72 0.00 0.00 3.56
289 290 3.496130 GGAGAGAACCATGCGTGATATTG 59.504 47.826 7.72 0.00 0.00 1.90
290 291 3.389329 AGGAGAGAACCATGCGTGATATT 59.611 43.478 7.72 0.00 0.00 1.28
291 292 2.968574 AGGAGAGAACCATGCGTGATAT 59.031 45.455 7.72 0.00 0.00 1.63
292 293 2.388735 AGGAGAGAACCATGCGTGATA 58.611 47.619 7.72 0.00 0.00 2.15
293 294 1.198713 AGGAGAGAACCATGCGTGAT 58.801 50.000 7.72 0.00 0.00 3.06
294 295 1.847328 TAGGAGAGAACCATGCGTGA 58.153 50.000 7.72 0.00 0.00 4.35
295 296 2.544685 CTTAGGAGAGAACCATGCGTG 58.455 52.381 0.00 0.00 0.00 5.34
296 297 1.134670 GCTTAGGAGAGAACCATGCGT 60.135 52.381 0.00 0.00 0.00 5.24
297 298 1.576356 GCTTAGGAGAGAACCATGCG 58.424 55.000 0.00 0.00 0.00 4.73
298 299 1.210478 TGGCTTAGGAGAGAACCATGC 59.790 52.381 0.00 0.00 0.00 4.06
299 300 3.634397 TTGGCTTAGGAGAGAACCATG 57.366 47.619 0.00 0.00 0.00 3.66
300 301 3.137360 GGATTGGCTTAGGAGAGAACCAT 59.863 47.826 0.00 0.00 0.00 3.55
301 302 2.505819 GGATTGGCTTAGGAGAGAACCA 59.494 50.000 0.00 0.00 0.00 3.67
302 303 2.774809 AGGATTGGCTTAGGAGAGAACC 59.225 50.000 0.00 0.00 0.00 3.62
303 304 3.802866 CAGGATTGGCTTAGGAGAGAAC 58.197 50.000 0.00 0.00 0.00 3.01
304 305 2.171448 GCAGGATTGGCTTAGGAGAGAA 59.829 50.000 0.00 0.00 0.00 2.87
305 306 1.765314 GCAGGATTGGCTTAGGAGAGA 59.235 52.381 0.00 0.00 0.00 3.10
306 307 1.539929 CGCAGGATTGGCTTAGGAGAG 60.540 57.143 0.00 0.00 0.00 3.20
307 308 0.465705 CGCAGGATTGGCTTAGGAGA 59.534 55.000 0.00 0.00 0.00 3.71
308 309 2.997899 CGCAGGATTGGCTTAGGAG 58.002 57.895 0.00 0.00 0.00 3.69
372 373 1.696314 TTGGATGGGAGGGGTAGGC 60.696 63.158 0.00 0.00 0.00 3.93
469 517 2.847234 AAGGACAGCGGTGGTGGA 60.847 61.111 20.20 0.00 35.13 4.02
472 520 2.752807 AACCAAGGACAGCGGTGGT 61.753 57.895 20.20 2.53 46.38 4.16
473 521 2.113139 AACCAAGGACAGCGGTGG 59.887 61.111 20.20 1.80 37.17 4.61
502 550 2.522185 AGCATAATAGCCCAGGCAATG 58.478 47.619 12.03 9.68 44.88 2.82
503 551 2.895404 CAAGCATAATAGCCCAGGCAAT 59.105 45.455 12.03 0.00 44.88 3.56
529 577 4.142687 CGCGAGATTATTTCACCCAAAACT 60.143 41.667 0.00 0.00 0.00 2.66
561 609 4.214327 CTTCTCCCGCTCCCGCTC 62.214 72.222 0.00 0.00 0.00 5.03
562 610 4.761058 TCTTCTCCCGCTCCCGCT 62.761 66.667 0.00 0.00 0.00 5.52
563 611 4.214327 CTCTTCTCCCGCTCCCGC 62.214 72.222 0.00 0.00 0.00 6.13
564 612 2.756283 ACTCTTCTCCCGCTCCCG 60.756 66.667 0.00 0.00 0.00 5.14
565 613 2.428085 GGACTCTTCTCCCGCTCCC 61.428 68.421 0.00 0.00 0.00 4.30
566 614 0.973496 AAGGACTCTTCTCCCGCTCC 60.973 60.000 0.00 0.00 0.00 4.70
567 615 0.899019 AAAGGACTCTTCTCCCGCTC 59.101 55.000 0.00 0.00 31.82 5.03
568 616 1.276705 GAAAAGGACTCTTCTCCCGCT 59.723 52.381 0.00 0.00 31.82 5.52
569 617 1.676314 GGAAAAGGACTCTTCTCCCGC 60.676 57.143 0.00 0.00 34.75 6.13
570 618 1.903183 AGGAAAAGGACTCTTCTCCCG 59.097 52.381 0.00 0.00 40.23 5.14
604 652 8.673711 CACAAACCAAAATCGATATCCTTTCTA 58.326 33.333 0.00 0.00 0.00 2.10
637 685 6.856135 AAAGTTTACTCCTTTTGACTACGG 57.144 37.500 0.00 0.00 0.00 4.02
656 706 6.177610 TCAATAGCCAAACTCCGAATAAAGT 58.822 36.000 0.00 0.00 0.00 2.66
657 707 6.538742 TCTCAATAGCCAAACTCCGAATAAAG 59.461 38.462 0.00 0.00 0.00 1.85
670 720 5.584649 CGGATTACAACTTCTCAATAGCCAA 59.415 40.000 0.00 0.00 0.00 4.52
673 723 5.357257 TCCGGATTACAACTTCTCAATAGC 58.643 41.667 0.00 0.00 0.00 2.97
676 726 5.131142 AGGATCCGGATTACAACTTCTCAAT 59.869 40.000 20.22 0.00 0.00 2.57
737 4663 2.038557 TCTCTATTTATTGAGGCCGGCC 59.961 50.000 39.29 39.29 31.86 6.13
760 4686 1.395826 CGCCCCTCCTACTCCTCAAG 61.396 65.000 0.00 0.00 0.00 3.02
762 4688 1.656092 ATCGCCCCTCCTACTCCTCA 61.656 60.000 0.00 0.00 0.00 3.86
764 4690 0.760945 CAATCGCCCCTCCTACTCCT 60.761 60.000 0.00 0.00 0.00 3.69
780 4710 6.260936 GGATGTCAACTTATTGGATCGACAAT 59.739 38.462 6.51 6.51 43.13 2.71
800 4730 2.352323 GCGAAAACAAAATCGGGGATGT 60.352 45.455 0.00 0.00 39.38 3.06
823 4753 3.612860 CGTAACAAAGCAGACTAATCGCT 59.387 43.478 0.00 0.00 36.63 4.93
843 4773 1.065998 TCTGTTTATTTAGCCCGGCGT 60.066 47.619 6.01 0.00 0.00 5.68
850 4780 4.770795 TCCTGCTCCTCTGTTTATTTAGC 58.229 43.478 0.00 0.00 0.00 3.09
886 5031 0.394565 ACGCCTGATCTGCCCTTATC 59.605 55.000 0.00 0.00 0.00 1.75
915 5060 6.035368 AGATCGATCTTATTGGATCTGTGG 57.965 41.667 22.32 0.00 42.85 4.17
942 5112 1.863454 GATGTTATGACGCCTGAGCTG 59.137 52.381 0.00 0.00 36.60 4.24
945 5115 3.525537 ACTTGATGTTATGACGCCTGAG 58.474 45.455 0.00 0.00 0.00 3.35
946 5116 3.056179 TGACTTGATGTTATGACGCCTGA 60.056 43.478 0.00 0.00 0.00 3.86
950 5120 5.163864 TGTTGATGACTTGATGTTATGACGC 60.164 40.000 0.00 0.00 0.00 5.19
955 5125 6.942005 TGGTCTTGTTGATGACTTGATGTTAT 59.058 34.615 0.00 0.00 34.01 1.89
956 5126 6.204688 GTGGTCTTGTTGATGACTTGATGTTA 59.795 38.462 0.00 0.00 34.01 2.41
958 5128 4.516698 GTGGTCTTGTTGATGACTTGATGT 59.483 41.667 0.00 0.00 34.01 3.06
995 5231 5.047448 TGCATTTTTAGCTTTGTCATGGCTA 60.047 36.000 0.00 0.00 37.50 3.93
1010 5298 4.930463 TTACGTCTGCGATGCATTTTTA 57.070 36.364 0.00 0.00 38.13 1.52
1016 5304 2.570442 TACATTACGTCTGCGATGCA 57.430 45.000 0.00 0.00 42.00 3.96
1017 5305 2.858344 ACTTACATTACGTCTGCGATGC 59.142 45.455 0.00 0.00 42.00 3.91
1029 5317 6.970043 GCACAACAGAAACAACACTTACATTA 59.030 34.615 0.00 0.00 0.00 1.90
1079 5519 3.913799 TCAGAGTTTTGGGGATGAACCTA 59.086 43.478 0.00 0.00 38.98 3.08
1096 5536 7.824672 AGCTGGAAAACAAGAAATAATCAGAG 58.175 34.615 0.00 0.00 0.00 3.35
1111 5600 3.995705 TGCATTGCATTTAGCTGGAAAAC 59.004 39.130 7.38 0.00 45.94 2.43
1138 5630 1.891060 GCGTCTTCTGTGCGAGTTGG 61.891 60.000 0.00 0.00 0.00 3.77
1221 5716 1.979693 GAGCGTGTCCACCCTCTCT 60.980 63.158 5.12 0.00 34.35 3.10
1335 5830 8.367911 AGGCTGATAACACGAGATTTATCATAA 58.632 33.333 6.43 0.00 41.59 1.90
1336 5831 7.896811 AGGCTGATAACACGAGATTTATCATA 58.103 34.615 6.43 0.00 41.59 2.15
1345 5840 2.164422 CACTGAGGCTGATAACACGAGA 59.836 50.000 0.00 0.00 0.00 4.04
1373 5874 0.941542 CACAACACCGTTGGTTCGAT 59.058 50.000 11.26 0.00 31.02 3.59
1429 5930 5.163468 TGACTTTGCTGATAGTGATCTCCTC 60.163 44.000 0.00 0.00 32.79 3.71
1440 5941 7.119699 ACGAATCTGATTTTGACTTTGCTGATA 59.880 33.333 4.11 0.00 0.00 2.15
1450 5951 5.385617 CACCAAGACGAATCTGATTTTGAC 58.614 41.667 12.01 6.19 34.48 3.18
1475 5976 3.268330 CCAATGGTGAGAGAGTCATGTG 58.732 50.000 0.00 0.00 37.56 3.21
1593 6094 1.738099 CTTCGCACCGTGGAGGAAG 60.738 63.158 0.00 0.00 45.00 3.46
1603 6104 0.874390 TCATTGAACTGCTTCGCACC 59.126 50.000 0.00 0.00 33.79 5.01
1774 6278 0.321034 TGCTCTACTTGCAGCACAGG 60.321 55.000 0.00 0.00 40.80 4.00
1828 6332 9.709495 ATATATCAGCTCAACTCTCTCAAATTC 57.291 33.333 0.00 0.00 0.00 2.17
1868 6372 4.341520 ACCAACTCTTATATCTCACCCGTC 59.658 45.833 0.00 0.00 0.00 4.79
1932 6439 0.108585 TGAGGCTCGGCTTTGAAAGT 59.891 50.000 10.42 0.00 0.00 2.66
1963 6470 2.236395 CAAGAGTCTTATCCCAACGGGT 59.764 50.000 4.74 0.00 44.74 5.28
1970 6477 7.171630 TGACTTAACTCAAGAGTCTTATCCC 57.828 40.000 4.74 0.00 41.58 3.85
2017 6524 5.277011 CGAAATTCAGATGCAGATCGCTTAA 60.277 40.000 10.16 0.00 43.06 1.85
2118 6633 9.708092 AGAAGACCAACTTAAGTTAATACTGTC 57.292 33.333 20.15 17.04 39.13 3.51
2122 6637 8.657729 GCAGAGAAGACCAACTTAAGTTAATAC 58.342 37.037 20.15 11.83 39.13 1.89
2178 6836 8.803799 CAGAAAAACAAATTACAAACTTAGCGT 58.196 29.630 0.00 0.00 0.00 5.07
2239 6901 0.110056 GGTGAACACATGCTTGAGCG 60.110 55.000 6.60 0.00 45.83 5.03
2248 6910 4.556501 CGTGCTGTAATTTGGTGAACACAT 60.557 41.667 7.25 0.00 0.00 3.21
2253 6915 3.206964 TCACGTGCTGTAATTTGGTGAA 58.793 40.909 11.67 0.00 30.77 3.18
2257 6919 4.406069 CAGATTCACGTGCTGTAATTTGG 58.594 43.478 11.67 0.00 0.00 3.28
2288 6950 3.887621 TCTAAATCACGTCCTTCAGGG 57.112 47.619 0.00 0.00 35.41 4.45
2298 6960 9.787532 AATAAACATTGTCCAATCTAAATCACG 57.212 29.630 0.00 0.00 0.00 4.35
2308 6970 7.816031 CAGCTTCAAGAATAAACATTGTCCAAT 59.184 33.333 0.00 0.00 0.00 3.16
2400 7065 7.147966 ACAGTAACCATTTTCCTTTCGAAACTT 60.148 33.333 6.47 0.00 40.23 2.66
2434 7099 0.768221 TGGCTTCCACTTCACCTCCT 60.768 55.000 0.00 0.00 0.00 3.69
2435 7100 0.329596 ATGGCTTCCACTTCACCTCC 59.670 55.000 0.00 0.00 35.80 4.30
2475 7140 7.049799 AGATGGTGAGCTTAACTAGATTCTC 57.950 40.000 0.00 0.00 0.00 2.87
2542 7207 1.075542 GACCGCATGTTTCATGACGA 58.924 50.000 19.33 0.00 0.00 4.20
2550 7215 6.112734 TCTCTGTTATATTGACCGCATGTTT 58.887 36.000 0.00 0.00 0.00 2.83
2636 7313 0.663568 CGGTCCGCGGATATCTTGAC 60.664 60.000 33.58 16.23 0.00 3.18
2680 7357 2.616376 TGTGAAGTCAAACCAACCATCG 59.384 45.455 0.00 0.00 0.00 3.84
2708 7468 8.857694 TTTTCAATTAGGACCGAAAGTAGATT 57.142 30.769 0.00 0.00 0.00 2.40
2769 7544 4.108501 AGGATGCATGGCAGATGATTTA 57.891 40.909 2.46 0.00 43.65 1.40
2861 7643 2.558359 GGGCAACAGTACAAAGCTTCAT 59.442 45.455 0.00 0.00 39.74 2.57
2920 7704 5.365403 TTTACATAACAAAAGAGGCACCG 57.635 39.130 0.00 0.00 0.00 4.94
3048 7841 9.722184 AGAGATTAAGTACTTGAACTAAAACCC 57.278 33.333 18.56 1.71 0.00 4.11
3061 7854 9.664332 TTTACGTACAGAGAGAGATTAAGTACT 57.336 33.333 0.00 0.00 0.00 2.73
3080 8088 3.192001 AGCACGTTCCATCTCTTTACGTA 59.808 43.478 0.00 0.00 42.81 3.57
3083 8091 2.673368 CCAGCACGTTCCATCTCTTTAC 59.327 50.000 0.00 0.00 0.00 2.01
3085 8093 1.347707 TCCAGCACGTTCCATCTCTTT 59.652 47.619 0.00 0.00 0.00 2.52
3086 8094 0.976641 TCCAGCACGTTCCATCTCTT 59.023 50.000 0.00 0.00 0.00 2.85
3087 8095 0.534412 CTCCAGCACGTTCCATCTCT 59.466 55.000 0.00 0.00 0.00 3.10
3088 8096 0.247736 ACTCCAGCACGTTCCATCTC 59.752 55.000 0.00 0.00 0.00 2.75
3089 8097 1.478510 CTACTCCAGCACGTTCCATCT 59.521 52.381 0.00 0.00 0.00 2.90
3090 8098 1.204941 ACTACTCCAGCACGTTCCATC 59.795 52.381 0.00 0.00 0.00 3.51
3091 8099 1.267121 ACTACTCCAGCACGTTCCAT 58.733 50.000 0.00 0.00 0.00 3.41
3092 8100 1.816835 CTACTACTCCAGCACGTTCCA 59.183 52.381 0.00 0.00 0.00 3.53
3093 8101 1.469423 GCTACTACTCCAGCACGTTCC 60.469 57.143 0.00 0.00 37.73 3.62
3094 8102 1.794437 CGCTACTACTCCAGCACGTTC 60.794 57.143 0.00 0.00 37.66 3.95
3095 8103 0.170561 CGCTACTACTCCAGCACGTT 59.829 55.000 0.00 0.00 37.66 3.99
3096 8104 0.959372 ACGCTACTACTCCAGCACGT 60.959 55.000 0.00 0.00 37.66 4.49
3097 8105 1.012086 TACGCTACTACTCCAGCACG 58.988 55.000 0.00 0.00 37.66 5.34
3098 8106 2.287668 CCATACGCTACTACTCCAGCAC 60.288 54.545 0.00 0.00 37.66 4.40
3099 8107 1.954382 CCATACGCTACTACTCCAGCA 59.046 52.381 0.00 0.00 37.66 4.41
3100 8108 2.226912 CTCCATACGCTACTACTCCAGC 59.773 54.545 0.00 0.00 0.00 4.85
3111 8119 0.687757 TTCTCCTGCCTCCATACGCT 60.688 55.000 0.00 0.00 0.00 5.07
3113 8121 0.824109 TGTTCTCCTGCCTCCATACG 59.176 55.000 0.00 0.00 0.00 3.06
3164 8281 3.058160 CAACGCCTCCCTTGCTGG 61.058 66.667 0.00 0.00 0.00 4.85
3165 8282 3.058160 CCAACGCCTCCCTTGCTG 61.058 66.667 0.00 0.00 0.00 4.41
3166 8283 2.640581 AAACCAACGCCTCCCTTGCT 62.641 55.000 0.00 0.00 0.00 3.91
3167 8284 1.744320 AAAACCAACGCCTCCCTTGC 61.744 55.000 0.00 0.00 0.00 4.01
3184 8301 1.142870 ACACCCAGCTGTTCAGCTAAA 59.857 47.619 23.92 0.00 44.30 1.85
3206 8323 1.662044 CACCAACCTGAAGCTTGGC 59.338 57.895 2.10 0.00 40.71 4.52
3254 8371 3.311048 GCTTTATGTCCTGCACTAGCTTC 59.689 47.826 0.00 0.00 42.74 3.86
3282 8399 2.572290 ACCTTTGCTAAAGCGACAACT 58.428 42.857 0.00 0.00 45.83 3.16
3286 8403 1.666023 GCCAACCTTTGCTAAAGCGAC 60.666 52.381 0.00 0.00 45.83 5.19
3325 8442 6.576185 ACATTAATCCCATGCTTTGCTAAAG 58.424 36.000 4.78 4.78 41.46 1.85
3358 8475 6.116126 AGGTTAAAGGTGCAGAATACTCATC 58.884 40.000 0.00 0.00 0.00 2.92
3361 8478 6.174049 AGAAGGTTAAAGGTGCAGAATACTC 58.826 40.000 0.00 0.00 0.00 2.59
3362 8479 6.128138 AGAAGGTTAAAGGTGCAGAATACT 57.872 37.500 0.00 0.00 0.00 2.12
3363 8480 6.819397 AAGAAGGTTAAAGGTGCAGAATAC 57.181 37.500 0.00 0.00 0.00 1.89
3364 8481 8.325787 TCATAAGAAGGTTAAAGGTGCAGAATA 58.674 33.333 0.00 0.00 0.00 1.75
3366 8483 6.539173 TCATAAGAAGGTTAAAGGTGCAGAA 58.461 36.000 0.00 0.00 0.00 3.02
3367 8484 6.121776 TCATAAGAAGGTTAAAGGTGCAGA 57.878 37.500 0.00 0.00 0.00 4.26
3409 8708 4.410492 AGCTTAAGTGCGTGAAATGAAG 57.590 40.909 4.02 0.00 38.13 3.02
3442 8741 4.262079 GGTATGTCTTAGATCTTGGGTCCG 60.262 50.000 0.00 0.00 0.00 4.79
3509 8808 2.497675 GGCTCTCCGAGATTATATGGCA 59.502 50.000 0.00 0.00 0.00 4.92
3531 8830 0.948678 ACCGTTGGACCATTGTTTCG 59.051 50.000 0.00 0.00 0.00 3.46
3565 8864 3.288092 GGTTCCCCTACATTGGTTGATC 58.712 50.000 0.00 0.00 0.00 2.92
3606 8905 5.562298 TCATTCCCAGGCCTAAATAGTAC 57.438 43.478 3.98 0.00 0.00 2.73
3607 8906 6.542821 CATTCATTCCCAGGCCTAAATAGTA 58.457 40.000 3.98 0.00 0.00 1.82
3608 8907 5.388654 CATTCATTCCCAGGCCTAAATAGT 58.611 41.667 3.98 0.00 0.00 2.12
3613 8912 1.411501 GGCATTCATTCCCAGGCCTAA 60.412 52.381 3.98 0.00 38.37 2.69
3633 8932 1.789078 GCGGCTTGGCTATGTGATGG 61.789 60.000 0.00 0.00 0.00 3.51
3634 8933 0.816825 AGCGGCTTGGCTATGTGATG 60.817 55.000 0.00 0.00 42.62 3.07
3647 8946 3.146066 TCAAATACAAAGTGAAGCGGCT 58.854 40.909 0.00 0.00 0.00 5.52
3659 8958 6.676237 TTGCTAGCAATCGATCAAATACAA 57.324 33.333 26.06 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.