Multiple sequence alignment - TraesCS7A01G243400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G243400 chr7A 100.000 4515 0 0 1 4515 219035401 219030887 0.000000e+00 8338.0
1 TraesCS7A01G243400 chr7A 94.286 70 4 0 1 70 411741476 411741545 1.720000e-19 108.0
2 TraesCS7A01G243400 chr7D 93.105 2451 131 20 1322 3741 206610841 206608398 0.000000e+00 3555.0
3 TraesCS7A01G243400 chr7D 92.182 550 39 2 70 615 271513506 271514055 0.000000e+00 774.0
4 TraesCS7A01G243400 chr7D 91.758 546 43 2 70 614 526180200 526180744 0.000000e+00 758.0
5 TraesCS7A01G243400 chr7D 91.773 547 42 3 70 613 576580220 576580766 0.000000e+00 758.0
6 TraesCS7A01G243400 chr7D 84.870 423 53 6 757 1170 206615139 206614719 2.510000e-112 416.0
7 TraesCS7A01G243400 chr7B 93.149 2102 96 23 1667 3741 194755429 194757509 0.000000e+00 3040.0
8 TraesCS7A01G243400 chr7B 83.962 424 58 5 757 1170 194645715 194646138 9.100000e-107 398.0
9 TraesCS7A01G243400 chr7B 86.325 234 28 3 1429 1659 194754894 194755126 7.500000e-63 252.0
10 TraesCS7A01G243400 chr5D 92.139 547 41 2 70 615 203170973 203171518 0.000000e+00 771.0
11 TraesCS7A01G243400 chr5D 91.606 548 44 2 70 615 220502906 220502359 0.000000e+00 756.0
12 TraesCS7A01G243400 chr5D 91.439 549 45 2 70 616 360554838 360554290 0.000000e+00 752.0
13 TraesCS7A01G243400 chr5A 91.590 547 45 1 70 615 280244059 280243513 0.000000e+00 754.0
14 TraesCS7A01G243400 chr2D 91.713 543 44 1 70 611 479250988 479251530 0.000000e+00 752.0
15 TraesCS7A01G243400 chr2D 83.588 524 72 10 4001 4515 603409595 603409077 3.160000e-131 479.0
16 TraesCS7A01G243400 chr2D 82.296 514 74 9 4003 4509 542640775 542641278 3.230000e-116 429.0
17 TraesCS7A01G243400 chr2D 91.667 168 13 1 3738 3904 623354521 623354688 9.770000e-57 231.0
18 TraesCS7A01G243400 chr2D 89.944 179 13 5 3737 3911 194458782 194458605 4.540000e-55 226.0
19 TraesCS7A01G243400 chr6D 91.408 547 44 3 70 615 348285961 348286505 0.000000e+00 747.0
20 TraesCS7A01G243400 chr4D 86.973 522 59 5 4001 4515 381735115 381735634 3.030000e-161 579.0
21 TraesCS7A01G243400 chr4D 93.373 166 10 1 3737 3901 216792655 216792820 1.250000e-60 244.0
22 TraesCS7A01G243400 chr4D 74.854 342 50 22 834 1148 486524396 486524064 6.130000e-24 122.0
23 TraesCS7A01G243400 chr4D 94.286 70 4 0 1 70 267084230 267084161 1.720000e-19 108.0
24 TraesCS7A01G243400 chr4D 94.203 69 4 0 1 69 358693858 358693926 6.180000e-19 106.0
25 TraesCS7A01G243400 chr4D 80.800 125 8 5 757 881 486410763 486410871 2.890000e-12 84.2
26 TraesCS7A01G243400 chr4D 73.188 276 39 19 834 1090 486428724 486428983 2.910000e-07 67.6
27 TraesCS7A01G243400 chr3A 84.512 523 58 11 4003 4515 1027850 1027341 3.140000e-136 496.0
28 TraesCS7A01G243400 chr3A 82.885 520 75 11 4001 4512 127312710 127312197 5.320000e-124 455.0
29 TraesCS7A01G243400 chr3A 94.286 70 4 0 1 70 220778883 220778814 1.720000e-19 108.0
30 TraesCS7A01G243400 chr5B 83.462 520 73 10 4000 4509 489501089 489501605 5.290000e-129 472.0
31 TraesCS7A01G243400 chrUn 84.922 451 54 9 4071 4515 75460083 75459641 1.150000e-120 444.0
32 TraesCS7A01G243400 chr2B 85.045 448 53 7 4075 4509 245692809 245693255 1.150000e-120 444.0
33 TraesCS7A01G243400 chr1B 81.676 513 80 13 4006 4512 529270199 529269695 9.040000e-112 414.0
34 TraesCS7A01G243400 chr3D 92.771 166 11 1 3737 3901 208893029 208892864 5.840000e-59 239.0
35 TraesCS7A01G243400 chr3D 90.805 174 13 3 3732 3902 182322143 182322316 3.510000e-56 230.0
36 TraesCS7A01G243400 chr6A 92.727 165 11 1 3737 3900 604588021 604587857 2.100000e-58 237.0
37 TraesCS7A01G243400 chr6A 95.652 69 3 0 1 69 65407001 65406933 1.330000e-20 111.0
38 TraesCS7A01G243400 chr1A 92.683 164 11 1 3738 3900 508931837 508932000 7.550000e-58 235.0
39 TraesCS7A01G243400 chr1A 91.667 168 12 2 3736 3902 592833975 592833809 9.770000e-57 231.0
40 TraesCS7A01G243400 chr1A 94.286 70 4 0 1 70 247505683 247505614 1.720000e-19 108.0
41 TraesCS7A01G243400 chr1A 84.615 117 7 6 757 873 52844613 52844718 6.180000e-19 106.0
42 TraesCS7A01G243400 chr4A 91.617 167 13 1 3737 3902 629379750 629379916 3.510000e-56 230.0
43 TraesCS7A01G243400 chr4A 94.203 69 4 0 1 69 504704878 504704946 6.180000e-19 106.0
44 TraesCS7A01G243400 chr2A 94.286 70 4 0 1 70 250725924 250725993 1.720000e-19 108.0
45 TraesCS7A01G243400 chr2A 84.615 104 9 6 1 104 545934463 545934367 3.720000e-16 97.1
46 TraesCS7A01G243400 chr4B 100.000 40 0 0 834 873 620939952 620939991 1.740000e-09 75.0
47 TraesCS7A01G243400 chr4B 93.750 48 3 0 834 881 620694709 620694756 6.270000e-09 73.1
48 TraesCS7A01G243400 chr4B 72.012 343 57 27 834 1148 620363528 620363859 1.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G243400 chr7A 219030887 219035401 4514 True 8338.0 8338 100.0000 1 4515 1 chr7A.!!$R1 4514
1 TraesCS7A01G243400 chr7D 206608398 206615139 6741 True 1985.5 3555 88.9875 757 3741 2 chr7D.!!$R1 2984
2 TraesCS7A01G243400 chr7D 271513506 271514055 549 False 774.0 774 92.1820 70 615 1 chr7D.!!$F1 545
3 TraesCS7A01G243400 chr7D 526180200 526180744 544 False 758.0 758 91.7580 70 614 1 chr7D.!!$F2 544
4 TraesCS7A01G243400 chr7D 576580220 576580766 546 False 758.0 758 91.7730 70 613 1 chr7D.!!$F3 543
5 TraesCS7A01G243400 chr7B 194754894 194757509 2615 False 1646.0 3040 89.7370 1429 3741 2 chr7B.!!$F2 2312
6 TraesCS7A01G243400 chr5D 203170973 203171518 545 False 771.0 771 92.1390 70 615 1 chr5D.!!$F1 545
7 TraesCS7A01G243400 chr5D 220502359 220502906 547 True 756.0 756 91.6060 70 615 1 chr5D.!!$R1 545
8 TraesCS7A01G243400 chr5D 360554290 360554838 548 True 752.0 752 91.4390 70 616 1 chr5D.!!$R2 546
9 TraesCS7A01G243400 chr5A 280243513 280244059 546 True 754.0 754 91.5900 70 615 1 chr5A.!!$R1 545
10 TraesCS7A01G243400 chr2D 479250988 479251530 542 False 752.0 752 91.7130 70 611 1 chr2D.!!$F1 541
11 TraesCS7A01G243400 chr2D 603409077 603409595 518 True 479.0 479 83.5880 4001 4515 1 chr2D.!!$R2 514
12 TraesCS7A01G243400 chr2D 542640775 542641278 503 False 429.0 429 82.2960 4003 4509 1 chr2D.!!$F2 506
13 TraesCS7A01G243400 chr6D 348285961 348286505 544 False 747.0 747 91.4080 70 615 1 chr6D.!!$F1 545
14 TraesCS7A01G243400 chr4D 381735115 381735634 519 False 579.0 579 86.9730 4001 4515 1 chr4D.!!$F3 514
15 TraesCS7A01G243400 chr3A 1027341 1027850 509 True 496.0 496 84.5120 4003 4515 1 chr3A.!!$R1 512
16 TraesCS7A01G243400 chr3A 127312197 127312710 513 True 455.0 455 82.8850 4001 4512 1 chr3A.!!$R2 511
17 TraesCS7A01G243400 chr5B 489501089 489501605 516 False 472.0 472 83.4620 4000 4509 1 chr5B.!!$F1 509
18 TraesCS7A01G243400 chr1B 529269695 529270199 504 True 414.0 414 81.6760 4006 4512 1 chr1B.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.107993 AGTCATGCCTCGACACATGG 60.108 55.0 18.21 3.54 43.12 3.66 F
68 69 0.108520 GCCGAATCGTGGGAGTTACA 60.109 55.0 0.82 0.00 0.00 2.41 F
1309 5109 0.029433 CAGACGCTAGCGCTCATACA 59.971 55.0 35.63 0.00 44.19 2.29 F
1310 5110 0.029567 AGACGCTAGCGCTCATACAC 59.970 55.0 35.63 16.22 44.19 2.90 F
1313 5113 0.029433 CGCTAGCGCTCATACACTCA 59.971 55.0 26.07 0.00 0.00 3.41 F
2217 6322 0.037734 TGCAGGACGTCAGAGGACTA 59.962 55.0 18.91 0.00 42.05 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1097 0.176449 CGTCTCCTCATGTGCCATCA 59.824 55.000 0.00 0.0 0.0 3.07 R
1966 6069 0.179084 AGCAATGTACGCGCCTGTAT 60.179 50.000 5.73 0.0 0.0 2.29 R
2950 7076 0.164647 CGTTCGCCTTGCTCTGAAAG 59.835 55.000 0.00 0.0 0.0 2.62 R
2953 7079 1.372997 GTCGTTCGCCTTGCTCTGA 60.373 57.895 0.00 0.0 0.0 3.27 R
3112 7238 2.216046 CTGCTCAGCTTGTTGAACTCA 58.784 47.619 0.00 0.0 0.0 3.41 R
3991 8121 0.026285 GACCCATTTGAATCGTCGCG 59.974 55.000 0.00 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.368256 CATTTATGCCTCTAAGTCATGCC 57.632 43.478 0.00 0.00 0.00 4.40
30 31 4.778213 TTTATGCCTCTAAGTCATGCCT 57.222 40.909 0.00 0.00 0.00 4.75
31 32 2.926778 ATGCCTCTAAGTCATGCCTC 57.073 50.000 0.00 0.00 0.00 4.70
32 33 0.461548 TGCCTCTAAGTCATGCCTCG 59.538 55.000 0.00 0.00 0.00 4.63
33 34 0.747255 GCCTCTAAGTCATGCCTCGA 59.253 55.000 0.00 0.00 0.00 4.04
34 35 1.537135 GCCTCTAAGTCATGCCTCGAC 60.537 57.143 0.00 0.00 0.00 4.20
35 36 1.751351 CCTCTAAGTCATGCCTCGACA 59.249 52.381 0.00 0.00 35.77 4.35
36 37 2.480416 CCTCTAAGTCATGCCTCGACAC 60.480 54.545 0.00 0.00 35.77 3.67
37 38 2.164422 CTCTAAGTCATGCCTCGACACA 59.836 50.000 0.00 0.00 35.77 3.72
38 39 2.760650 TCTAAGTCATGCCTCGACACAT 59.239 45.455 0.00 0.00 35.77 3.21
39 40 1.730501 AAGTCATGCCTCGACACATG 58.269 50.000 14.13 14.13 44.05 3.21
40 41 0.107993 AGTCATGCCTCGACACATGG 60.108 55.000 18.21 3.54 43.12 3.66
41 42 1.091771 GTCATGCCTCGACACATGGG 61.092 60.000 18.21 0.00 43.12 4.00
42 43 1.221566 CATGCCTCGACACATGGGA 59.778 57.895 0.00 0.13 39.98 4.37
43 44 0.812811 CATGCCTCGACACATGGGAG 60.813 60.000 0.00 0.00 39.98 4.30
44 45 0.977627 ATGCCTCGACACATGGGAGA 60.978 55.000 0.00 0.00 0.00 3.71
45 46 0.977627 TGCCTCGACACATGGGAGAT 60.978 55.000 0.00 0.00 0.00 2.75
46 47 1.040646 GCCTCGACACATGGGAGATA 58.959 55.000 0.00 0.00 0.00 1.98
47 48 1.620819 GCCTCGACACATGGGAGATAT 59.379 52.381 0.00 0.00 0.00 1.63
48 49 2.826128 GCCTCGACACATGGGAGATATA 59.174 50.000 0.00 0.00 0.00 0.86
49 50 3.119316 GCCTCGACACATGGGAGATATAG 60.119 52.174 0.00 0.00 0.00 1.31
50 51 3.119316 CCTCGACACATGGGAGATATAGC 60.119 52.174 0.00 0.00 0.00 2.97
51 52 2.826128 TCGACACATGGGAGATATAGCC 59.174 50.000 0.00 0.00 0.00 3.93
52 53 2.416027 CGACACATGGGAGATATAGCCG 60.416 54.545 0.00 0.00 0.00 5.52
53 54 2.826128 GACACATGGGAGATATAGCCGA 59.174 50.000 0.00 0.00 0.00 5.54
54 55 3.239449 ACACATGGGAGATATAGCCGAA 58.761 45.455 0.00 0.00 0.00 4.30
55 56 3.840666 ACACATGGGAGATATAGCCGAAT 59.159 43.478 0.00 0.00 0.00 3.34
56 57 4.081420 ACACATGGGAGATATAGCCGAATC 60.081 45.833 0.00 0.00 0.00 2.52
57 58 3.131223 ACATGGGAGATATAGCCGAATCG 59.869 47.826 0.00 0.00 0.00 3.34
58 59 2.803956 TGGGAGATATAGCCGAATCGT 58.196 47.619 0.82 0.00 0.00 3.73
59 60 2.492088 TGGGAGATATAGCCGAATCGTG 59.508 50.000 0.82 0.00 0.00 4.35
60 61 2.159226 GGGAGATATAGCCGAATCGTGG 60.159 54.545 0.82 0.00 0.00 4.94
61 62 2.159226 GGAGATATAGCCGAATCGTGGG 60.159 54.545 0.82 0.00 0.00 4.61
62 63 2.753452 GAGATATAGCCGAATCGTGGGA 59.247 50.000 0.82 0.00 0.00 4.37
63 64 2.755655 AGATATAGCCGAATCGTGGGAG 59.244 50.000 0.82 0.00 0.00 4.30
64 65 1.991121 TATAGCCGAATCGTGGGAGT 58.009 50.000 0.82 0.00 0.00 3.85
65 66 1.120530 ATAGCCGAATCGTGGGAGTT 58.879 50.000 0.82 0.00 0.00 3.01
66 67 1.766494 TAGCCGAATCGTGGGAGTTA 58.234 50.000 0.82 0.00 0.00 2.24
67 68 0.175073 AGCCGAATCGTGGGAGTTAC 59.825 55.000 0.82 0.00 0.00 2.50
68 69 0.108520 GCCGAATCGTGGGAGTTACA 60.109 55.000 0.82 0.00 0.00 2.41
109 110 0.469917 ACGATGCCGATGATTTCCCT 59.530 50.000 0.00 0.00 39.50 4.20
176 177 1.720781 AATTGCTCCTGCCCAAGTTT 58.279 45.000 0.00 0.00 38.71 2.66
224 228 3.686726 CCGAAAGTCCTCTCCTCATTTTG 59.313 47.826 0.00 0.00 0.00 2.44
462 468 7.353538 AGGTAGCCTAACATAGCTTTTTCAGC 61.354 42.308 0.00 0.00 39.83 4.26
481 487 0.250234 CTCCAGAATTCCAGCCGTCA 59.750 55.000 0.65 0.00 0.00 4.35
616 623 3.149981 TGCAAAATGGACGTATCAACCA 58.850 40.909 0.00 0.00 38.09 3.67
617 624 3.761218 TGCAAAATGGACGTATCAACCAT 59.239 39.130 0.03 0.03 44.87 3.55
624 631 6.681729 ATGGACGTATCAACCATTATAGGT 57.318 37.500 0.03 0.00 45.91 3.08
625 632 6.092955 TGGACGTATCAACCATTATAGGTC 57.907 41.667 0.00 0.00 42.25 3.85
626 633 5.599242 TGGACGTATCAACCATTATAGGTCA 59.401 40.000 13.82 2.50 42.25 4.02
627 634 6.157211 GGACGTATCAACCATTATAGGTCAG 58.843 44.000 13.82 0.00 42.25 3.51
628 635 6.015688 GGACGTATCAACCATTATAGGTCAGA 60.016 42.308 13.82 0.00 42.25 3.27
629 636 6.746120 ACGTATCAACCATTATAGGTCAGAC 58.254 40.000 0.00 0.00 42.25 3.51
630 637 6.550108 ACGTATCAACCATTATAGGTCAGACT 59.450 38.462 0.00 0.00 42.25 3.24
631 638 7.069578 ACGTATCAACCATTATAGGTCAGACTT 59.930 37.037 0.00 0.00 42.25 3.01
632 639 7.926555 CGTATCAACCATTATAGGTCAGACTTT 59.073 37.037 0.00 0.00 42.25 2.66
633 640 9.046296 GTATCAACCATTATAGGTCAGACTTTG 57.954 37.037 0.00 0.00 42.25 2.77
634 641 5.880332 TCAACCATTATAGGTCAGACTTTGC 59.120 40.000 0.00 0.00 42.25 3.68
635 642 5.700402 ACCATTATAGGTCAGACTTTGCT 57.300 39.130 0.00 0.00 37.28 3.91
636 643 5.431765 ACCATTATAGGTCAGACTTTGCTG 58.568 41.667 0.00 0.00 37.28 4.41
637 644 5.189736 ACCATTATAGGTCAGACTTTGCTGA 59.810 40.000 0.00 0.00 42.31 4.26
638 645 6.126652 ACCATTATAGGTCAGACTTTGCTGAT 60.127 38.462 0.00 0.00 45.75 2.90
639 646 6.204301 CCATTATAGGTCAGACTTTGCTGATG 59.796 42.308 0.00 0.00 45.75 3.07
640 647 2.486472 AGGTCAGACTTTGCTGATGG 57.514 50.000 0.00 0.00 45.75 3.51
641 648 1.004044 AGGTCAGACTTTGCTGATGGG 59.996 52.381 0.00 0.00 45.75 4.00
642 649 1.003580 GGTCAGACTTTGCTGATGGGA 59.996 52.381 0.00 0.00 45.75 4.37
643 650 2.079925 GTCAGACTTTGCTGATGGGAC 58.920 52.381 0.00 0.00 45.75 4.46
644 651 1.003580 TCAGACTTTGCTGATGGGACC 59.996 52.381 0.00 0.00 39.84 4.46
645 652 1.004044 CAGACTTTGCTGATGGGACCT 59.996 52.381 0.00 0.00 38.14 3.85
646 653 1.280421 AGACTTTGCTGATGGGACCTC 59.720 52.381 0.00 0.00 0.00 3.85
647 654 1.003580 GACTTTGCTGATGGGACCTCA 59.996 52.381 0.00 0.00 0.00 3.86
648 655 1.004044 ACTTTGCTGATGGGACCTCAG 59.996 52.381 6.41 6.41 42.47 3.35
649 656 0.329261 TTTGCTGATGGGACCTCAGG 59.671 55.000 11.61 0.00 40.40 3.86
650 657 2.191641 GCTGATGGGACCTCAGGC 59.808 66.667 11.61 2.43 40.40 4.85
651 658 2.503061 CTGATGGGACCTCAGGCG 59.497 66.667 0.00 0.00 37.15 5.52
652 659 3.083349 TGATGGGACCTCAGGCGG 61.083 66.667 0.00 0.00 0.00 6.13
653 660 4.554036 GATGGGACCTCAGGCGGC 62.554 72.222 0.00 0.00 0.00 6.53
670 677 3.151022 CGGCAGGAGGGAGGAGAC 61.151 72.222 0.00 0.00 0.00 3.36
671 678 3.151022 GGCAGGAGGGAGGAGACG 61.151 72.222 0.00 0.00 0.00 4.18
672 679 2.043852 GCAGGAGGGAGGAGACGA 60.044 66.667 0.00 0.00 0.00 4.20
673 680 2.124693 GCAGGAGGGAGGAGACGAG 61.125 68.421 0.00 0.00 0.00 4.18
674 681 1.454847 CAGGAGGGAGGAGACGAGG 60.455 68.421 0.00 0.00 0.00 4.63
675 682 1.619975 AGGAGGGAGGAGACGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
676 683 1.152839 GGAGGGAGGAGACGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
677 684 1.637724 GGAGGGAGGAGACGAGGAGA 61.638 65.000 0.00 0.00 0.00 3.71
678 685 0.179029 GAGGGAGGAGACGAGGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
679 686 1.152839 GGGAGGAGACGAGGAGAGG 60.153 68.421 0.00 0.00 0.00 3.69
680 687 1.637724 GGGAGGAGACGAGGAGAGGA 61.638 65.000 0.00 0.00 0.00 3.71
681 688 0.179029 GGAGGAGACGAGGAGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
682 689 0.179029 GAGGAGACGAGGAGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
683 690 1.826487 GGAGACGAGGAGAGGAGGC 60.826 68.421 0.00 0.00 0.00 4.70
684 691 1.826487 GAGACGAGGAGAGGAGGCC 60.826 68.421 0.00 0.00 0.00 5.19
685 692 2.277404 GACGAGGAGAGGAGGCCT 59.723 66.667 3.86 3.86 37.18 5.19
686 693 0.989212 AGACGAGGAGAGGAGGCCTA 60.989 60.000 4.42 0.00 33.84 3.93
687 694 0.536460 GACGAGGAGAGGAGGCCTAG 60.536 65.000 4.42 0.00 33.84 3.02
688 695 1.228429 CGAGGAGAGGAGGCCTAGG 60.228 68.421 4.42 3.67 33.84 3.02
689 696 1.155155 GAGGAGAGGAGGCCTAGGG 59.845 68.421 4.42 0.00 33.84 3.53
711 718 3.118454 CAACGCGATTGCCCTCGT 61.118 61.111 15.93 0.00 40.73 4.18
714 721 3.118454 CGCGATTGCCCTCGTGTT 61.118 61.111 0.00 0.00 42.58 3.32
715 722 2.480555 GCGATTGCCCTCGTGTTG 59.519 61.111 6.84 0.00 40.73 3.33
716 723 2.480555 CGATTGCCCTCGTGTTGC 59.519 61.111 0.00 0.00 34.00 4.17
717 724 2.877691 GATTGCCCTCGTGTTGCC 59.122 61.111 0.00 0.00 0.00 4.52
718 725 1.675641 GATTGCCCTCGTGTTGCCT 60.676 57.895 0.00 0.00 0.00 4.75
719 726 0.392461 GATTGCCCTCGTGTTGCCTA 60.392 55.000 0.00 0.00 0.00 3.93
720 727 0.392998 ATTGCCCTCGTGTTGCCTAG 60.393 55.000 0.00 0.00 0.00 3.02
721 728 2.125106 GCCCTCGTGTTGCCTAGG 60.125 66.667 3.67 3.67 0.00 3.02
722 729 2.584608 CCCTCGTGTTGCCTAGGG 59.415 66.667 11.72 0.00 42.72 3.53
723 730 2.291043 CCCTCGTGTTGCCTAGGGT 61.291 63.158 11.72 0.00 43.26 4.34
724 731 1.677552 CCTCGTGTTGCCTAGGGTT 59.322 57.895 11.72 0.00 0.00 4.11
725 732 0.673644 CCTCGTGTTGCCTAGGGTTG 60.674 60.000 11.72 0.00 0.00 3.77
726 733 1.298859 CTCGTGTTGCCTAGGGTTGC 61.299 60.000 11.72 0.00 0.00 4.17
727 734 2.677003 CGTGTTGCCTAGGGTTGCG 61.677 63.158 11.72 0.00 0.00 4.85
728 735 1.302192 GTGTTGCCTAGGGTTGCGA 60.302 57.895 11.72 0.00 0.00 5.10
729 736 1.302192 TGTTGCCTAGGGTTGCGAC 60.302 57.895 11.72 6.52 41.36 5.19
730 737 2.047655 TTGCCTAGGGTTGCGACG 60.048 61.111 11.72 0.00 0.00 5.12
731 738 3.599285 TTGCCTAGGGTTGCGACGG 62.599 63.158 11.72 0.00 0.00 4.79
732 739 4.832608 GCCTAGGGTTGCGACGGG 62.833 72.222 11.72 0.00 0.00 5.28
733 740 4.157120 CCTAGGGTTGCGACGGGG 62.157 72.222 0.00 0.00 0.00 5.73
734 741 4.157120 CTAGGGTTGCGACGGGGG 62.157 72.222 0.00 0.00 0.00 5.40
750 757 3.647771 GGGTGGGACAGGGGTGTC 61.648 72.222 0.00 0.00 41.80 3.67
751 758 2.529389 GGTGGGACAGGGGTGTCT 60.529 66.667 5.56 0.00 41.80 3.41
752 759 2.593956 GGTGGGACAGGGGTGTCTC 61.594 68.421 5.56 2.02 41.80 3.36
753 760 2.603473 TGGGACAGGGGTGTCTCG 60.603 66.667 5.56 0.00 41.99 4.04
754 761 4.083862 GGGACAGGGGTGTCTCGC 62.084 72.222 5.56 0.00 38.74 5.03
810 817 6.862209 TCATACCAATTTTTCACTACATGCC 58.138 36.000 0.00 0.00 0.00 4.40
821 828 4.450976 TCACTACATGCCATCAACCATAC 58.549 43.478 0.00 0.00 0.00 2.39
825 832 2.760092 ACATGCCATCAACCATACAACC 59.240 45.455 0.00 0.00 0.00 3.77
828 835 2.166829 GCCATCAACCATACAACCACA 58.833 47.619 0.00 0.00 0.00 4.17
829 836 2.760092 GCCATCAACCATACAACCACAT 59.240 45.455 0.00 0.00 0.00 3.21
831 838 4.677779 GCCATCAACCATACAACCACATTC 60.678 45.833 0.00 0.00 0.00 2.67
850 857 8.896744 CCACATTCTATCAATCACTACATGTTT 58.103 33.333 2.30 0.00 0.00 2.83
869 876 1.855295 TGCACCATCCAAATCAGCAT 58.145 45.000 0.00 0.00 0.00 3.79
879 886 5.818136 TCCAAATCAGCATACAACTAAGC 57.182 39.130 0.00 0.00 0.00 3.09
882 889 5.975344 CCAAATCAGCATACAACTAAGCATG 59.025 40.000 0.00 0.00 0.00 4.06
920 927 3.550437 AAACACAGAGCAACAGAGAGT 57.450 42.857 0.00 0.00 0.00 3.24
929 936 6.094881 ACAGAGCAACAGAGAGTAATAGAGAC 59.905 42.308 0.00 0.00 0.00 3.36
938 945 7.147391 ACAGAGAGTAATAGAGACATGAGAGGA 60.147 40.741 0.00 0.00 0.00 3.71
939 946 7.388776 CAGAGAGTAATAGAGACATGAGAGGAG 59.611 44.444 0.00 0.00 0.00 3.69
942 949 6.916909 AGTAATAGAGACATGAGAGGAGGAA 58.083 40.000 0.00 0.00 0.00 3.36
944 951 6.478512 AATAGAGACATGAGAGGAGGAAAC 57.521 41.667 0.00 0.00 0.00 2.78
945 952 3.784178 AGAGACATGAGAGGAGGAAACA 58.216 45.455 0.00 0.00 0.00 2.83
946 953 4.163427 AGAGACATGAGAGGAGGAAACAA 58.837 43.478 0.00 0.00 0.00 2.83
950 965 5.072329 AGACATGAGAGGAGGAAACAAAGAA 59.928 40.000 0.00 0.00 0.00 2.52
963 978 4.640771 AACAAAGAAGGCATACAGGAGA 57.359 40.909 0.00 0.00 0.00 3.71
968 983 2.428890 AGAAGGCATACAGGAGAAGACG 59.571 50.000 0.00 0.00 0.00 4.18
970 985 2.672098 AGGCATACAGGAGAAGACGAT 58.328 47.619 0.00 0.00 0.00 3.73
1009 1024 0.609957 CTCACCAGCAATGGCAAGGA 60.610 55.000 10.31 0.00 44.61 3.36
1011 1026 0.174845 CACCAGCAATGGCAAGGATG 59.825 55.000 10.31 0.00 44.61 3.51
1048 1063 3.013327 AGGAGCTCCTGCATGGCA 61.013 61.111 34.74 0.00 46.55 4.92
1049 1064 2.195139 GGAGCTCCTGCATGGCAT 59.805 61.111 26.25 0.00 42.74 4.40
1051 1066 0.888285 GGAGCTCCTGCATGGCATAC 60.888 60.000 26.25 0.00 42.74 2.39
1056 1071 0.918258 TCCTGCATGGCATACTGGAA 59.082 50.000 20.38 7.50 38.13 3.53
1063 1078 2.203209 GCATACTGGAAGGGGCGG 60.203 66.667 0.00 0.00 39.30 6.13
1065 1080 3.861797 ATACTGGAAGGGGCGGCG 61.862 66.667 0.51 0.51 39.30 6.46
1086 1101 2.509336 GCGGAGGTGACGGTGATG 60.509 66.667 0.00 0.00 0.00 3.07
1091 1106 2.031919 GGTGACGGTGATGGCACA 59.968 61.111 1.77 0.00 46.96 4.57
1103 1118 2.187946 GGCACATGAGGAGACGGG 59.812 66.667 0.00 0.00 0.00 5.28
1173 1188 3.009301 CACCGGTGGATCTAACGATAC 57.991 52.381 27.57 0.00 0.00 2.24
1174 1189 1.959282 ACCGGTGGATCTAACGATACC 59.041 52.381 19.06 0.00 28.65 2.73
1175 1190 1.958579 CCGGTGGATCTAACGATACCA 59.041 52.381 19.06 0.00 30.73 3.25
1181 4971 3.228453 GGATCTAACGATACCAGGGTGA 58.772 50.000 0.06 0.00 0.00 4.02
1182 4972 3.640029 GGATCTAACGATACCAGGGTGAA 59.360 47.826 0.06 0.00 0.00 3.18
1187 4977 0.527817 CGATACCAGGGTGAAGTCGC 60.528 60.000 0.06 0.00 0.00 5.19
1195 4985 4.681978 GTGAAGTCGCCGGCTGGT 62.682 66.667 26.68 6.69 37.67 4.00
1230 5030 2.299503 GAACCCTAGCTCGAGGTGGC 62.300 65.000 26.70 6.85 34.45 5.01
1232 5032 2.060980 CCCTAGCTCGAGGTGGCTT 61.061 63.158 26.70 0.05 39.65 4.35
1237 5037 2.650116 GCTCGAGGTGGCTTCCTGA 61.650 63.158 15.58 4.63 38.02 3.86
1243 5043 1.380380 GGTGGCTTCCTGATTGGGG 60.380 63.158 0.00 0.00 36.20 4.96
1245 5045 0.681243 GTGGCTTCCTGATTGGGGAC 60.681 60.000 0.00 0.00 36.20 4.46
1248 5048 1.224592 CTTCCTGATTGGGGACGGG 59.775 63.158 0.00 0.00 36.20 5.28
1270 5070 1.004200 GTGGGGGAACGAACACGAT 60.004 57.895 0.00 0.00 0.00 3.73
1275 5075 0.389948 GGGAACGAACACGATGCTCT 60.390 55.000 0.00 0.00 0.00 4.09
1276 5076 1.429463 GGAACGAACACGATGCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
1277 5077 1.798813 GGAACGAACACGATGCTCTTT 59.201 47.619 0.00 0.00 0.00 2.52
1278 5078 2.223377 GGAACGAACACGATGCTCTTTT 59.777 45.455 0.00 0.00 0.00 2.27
1279 5079 3.303791 GGAACGAACACGATGCTCTTTTT 60.304 43.478 0.00 0.00 0.00 1.94
1302 5102 2.651232 CGGTACAGACGCTAGCGC 60.651 66.667 35.63 26.66 44.19 5.92
1303 5103 2.799371 GGTACAGACGCTAGCGCT 59.201 61.111 35.63 28.32 44.19 5.92
1304 5104 1.298488 GGTACAGACGCTAGCGCTC 60.298 63.158 35.63 28.48 44.19 5.03
1305 5105 1.428219 GTACAGACGCTAGCGCTCA 59.572 57.895 35.63 19.15 44.19 4.26
1306 5106 0.029567 GTACAGACGCTAGCGCTCAT 59.970 55.000 35.63 22.80 44.19 2.90
1307 5107 1.263484 GTACAGACGCTAGCGCTCATA 59.737 52.381 35.63 21.93 44.19 2.15
1308 5108 0.029567 ACAGACGCTAGCGCTCATAC 59.970 55.000 35.63 19.11 44.19 2.39
1309 5109 0.029433 CAGACGCTAGCGCTCATACA 59.971 55.000 35.63 0.00 44.19 2.29
1310 5110 0.029567 AGACGCTAGCGCTCATACAC 59.970 55.000 35.63 16.22 44.19 2.90
1311 5111 0.029567 GACGCTAGCGCTCATACACT 59.970 55.000 35.63 14.05 44.19 3.55
1312 5112 0.029567 ACGCTAGCGCTCATACACTC 59.970 55.000 35.63 0.00 44.19 3.51
1313 5113 0.029433 CGCTAGCGCTCATACACTCA 59.971 55.000 26.07 0.00 0.00 3.41
1314 5114 1.335415 CGCTAGCGCTCATACACTCAT 60.335 52.381 26.07 0.00 0.00 2.90
1315 5115 2.323959 GCTAGCGCTCATACACTCATC 58.676 52.381 16.34 0.00 0.00 2.92
1316 5116 2.924454 GCTAGCGCTCATACACTCATCC 60.924 54.545 16.34 0.00 0.00 3.51
1317 5117 1.407936 AGCGCTCATACACTCATCCT 58.592 50.000 2.64 0.00 0.00 3.24
1318 5118 1.759445 AGCGCTCATACACTCATCCTT 59.241 47.619 2.64 0.00 0.00 3.36
1319 5119 2.959030 AGCGCTCATACACTCATCCTTA 59.041 45.455 2.64 0.00 0.00 2.69
1320 5120 3.576118 AGCGCTCATACACTCATCCTTAT 59.424 43.478 2.64 0.00 0.00 1.73
1321 5121 3.677121 GCGCTCATACACTCATCCTTATG 59.323 47.826 0.00 0.00 0.00 1.90
1322 5122 4.559502 GCGCTCATACACTCATCCTTATGA 60.560 45.833 0.00 0.00 39.87 2.15
1323 5123 5.532557 CGCTCATACACTCATCCTTATGAA 58.467 41.667 0.00 0.00 41.57 2.57
1324 5124 5.403766 CGCTCATACACTCATCCTTATGAAC 59.596 44.000 0.00 0.00 41.57 3.18
1325 5125 6.283694 GCTCATACACTCATCCTTATGAACA 58.716 40.000 0.00 0.00 41.57 3.18
1326 5126 6.201806 GCTCATACACTCATCCTTATGAACAC 59.798 42.308 0.00 0.00 41.57 3.32
1327 5127 6.273071 TCATACACTCATCCTTATGAACACG 58.727 40.000 0.00 0.00 41.57 4.49
1328 5128 4.801330 ACACTCATCCTTATGAACACGA 57.199 40.909 0.00 0.00 41.57 4.35
1329 5129 4.748892 ACACTCATCCTTATGAACACGAG 58.251 43.478 0.00 0.00 41.57 4.18
1330 5130 3.553511 CACTCATCCTTATGAACACGAGC 59.446 47.826 0.00 0.00 41.57 5.03
1331 5131 3.449018 ACTCATCCTTATGAACACGAGCT 59.551 43.478 0.00 0.00 41.57 4.09
1332 5132 4.645136 ACTCATCCTTATGAACACGAGCTA 59.355 41.667 0.00 0.00 41.57 3.32
1333 5133 5.303078 ACTCATCCTTATGAACACGAGCTAT 59.697 40.000 0.00 0.00 41.57 2.97
1334 5134 5.532557 TCATCCTTATGAACACGAGCTATG 58.467 41.667 0.00 0.00 39.20 2.23
1352 5152 5.760253 AGCTATGTAGATCGAACATTTTGGG 59.240 40.000 18.13 8.29 38.49 4.12
1362 5162 0.827507 ACATTTTGGGCCTCGCTTGT 60.828 50.000 4.53 0.00 0.00 3.16
1363 5163 0.388907 CATTTTGGGCCTCGCTTGTG 60.389 55.000 4.53 0.00 0.00 3.33
1370 5171 2.425592 CCTCGCTTGTGTGTCCCA 59.574 61.111 0.00 0.00 0.00 4.37
1372 5173 1.230635 CCTCGCTTGTGTGTCCCAAG 61.231 60.000 0.00 0.00 41.75 3.61
1382 5183 2.114616 TGTGTCCCAAGTGGCATTTTT 58.885 42.857 0.00 0.00 0.00 1.94
1403 5204 5.715434 TTGGCCTAAATACTTTGTCCAAC 57.285 39.130 3.32 0.00 0.00 3.77
1408 5209 5.321927 CCTAAATACTTTGTCCAACAGGGT 58.678 41.667 0.00 0.00 38.11 4.34
1409 5210 6.478129 CCTAAATACTTTGTCCAACAGGGTA 58.522 40.000 0.00 0.00 38.11 3.69
1410 5211 6.598064 CCTAAATACTTTGTCCAACAGGGTAG 59.402 42.308 0.00 0.00 38.11 3.18
1414 5215 3.971971 ACTTTGTCCAACAGGGTAGTACT 59.028 43.478 0.00 0.00 38.11 2.73
1446 5247 4.438148 CAAATCGTTTTGTTTTGAGGGGT 58.562 39.130 10.21 0.00 38.84 4.95
1448 5249 4.746535 ATCGTTTTGTTTTGAGGGGTTT 57.253 36.364 0.00 0.00 0.00 3.27
1450 5251 3.510360 TCGTTTTGTTTTGAGGGGTTTGA 59.490 39.130 0.00 0.00 0.00 2.69
1451 5252 4.021368 TCGTTTTGTTTTGAGGGGTTTGAA 60.021 37.500 0.00 0.00 0.00 2.69
1454 5255 5.746990 TTTGTTTTGAGGGGTTTGAAAGA 57.253 34.783 0.00 0.00 0.00 2.52
1490 5291 1.400494 ACGATTCTAAAATGCACCGCC 59.600 47.619 0.00 0.00 0.00 6.13
1497 5298 0.247185 AAAATGCACCGCCATTCTGG 59.753 50.000 0.00 0.00 41.55 3.86
1500 5301 2.676471 GCACCGCCATTCTGGGTT 60.676 61.111 0.00 0.00 38.19 4.11
1505 5306 0.457035 CCGCCATTCTGGGTTGATTG 59.543 55.000 0.00 0.00 38.19 2.67
1506 5307 1.462616 CGCCATTCTGGGTTGATTGA 58.537 50.000 0.00 0.00 38.19 2.57
1507 5308 1.133025 CGCCATTCTGGGTTGATTGAC 59.867 52.381 0.00 0.00 38.19 3.18
1509 5310 2.710377 CCATTCTGGGTTGATTGACGA 58.290 47.619 0.00 0.00 32.67 4.20
1510 5311 3.282021 CCATTCTGGGTTGATTGACGAT 58.718 45.455 0.00 0.00 32.67 3.73
1511 5312 3.696051 CCATTCTGGGTTGATTGACGATT 59.304 43.478 0.00 0.00 32.67 3.34
1512 5313 4.158394 CCATTCTGGGTTGATTGACGATTT 59.842 41.667 0.00 0.00 32.67 2.17
1513 5314 5.336690 CCATTCTGGGTTGATTGACGATTTT 60.337 40.000 0.00 0.00 32.67 1.82
1515 5316 5.119931 TCTGGGTTGATTGACGATTTTTG 57.880 39.130 0.00 0.00 0.00 2.44
1529 5333 5.709966 ACGATTTTTGGGTAAGAAATGAGC 58.290 37.500 0.00 0.00 0.00 4.26
1554 5358 9.332301 GCATTTTTACAATTGTGATTTTCCATG 57.668 29.630 21.42 12.01 0.00 3.66
1568 5372 4.695217 TTTCCATGCCGTAATTCTTCAC 57.305 40.909 0.00 0.00 0.00 3.18
1569 5373 3.627395 TCCATGCCGTAATTCTTCACT 57.373 42.857 0.00 0.00 0.00 3.41
1610 5417 3.991051 ACCCAGACGCCGACACAG 61.991 66.667 0.00 0.00 0.00 3.66
1754 5856 2.163818 TAAACGCACACTCCCTCTTG 57.836 50.000 0.00 0.00 0.00 3.02
1771 5873 2.365768 GTCTCTCTCCCCCACCCC 60.366 72.222 0.00 0.00 0.00 4.95
1852 5954 1.201880 GTCAGTCTCAGTAACCCGTCC 59.798 57.143 0.00 0.00 0.00 4.79
1871 5973 4.583871 GTCCTTCACATCTCAATCCAACT 58.416 43.478 0.00 0.00 0.00 3.16
1893 5995 1.431496 GTGGCGCAAATGCTCAAATT 58.569 45.000 10.83 0.00 39.32 1.82
1898 6000 2.738314 GCGCAAATGCTCAAATTTCCTT 59.262 40.909 0.30 0.00 39.32 3.36
1903 6005 5.163513 CAAATGCTCAAATTTCCTTACGCT 58.836 37.500 0.00 0.00 0.00 5.07
1954 6057 1.004504 GCTTAGAGGCGCTCGATTTTG 60.005 52.381 7.64 0.00 35.36 2.44
1966 6069 4.856487 CGCTCGATTTTGGAAAAATTAGCA 59.144 37.500 21.14 2.85 33.25 3.49
1986 6089 0.804544 TACAGGCGCGTACATTGCTC 60.805 55.000 8.43 0.00 0.00 4.26
1998 6101 5.056480 CGTACATTGCTCCATTTGGATCTA 58.944 41.667 0.00 0.00 44.46 1.98
2000 6103 6.128445 CGTACATTGCTCCATTTGGATCTATC 60.128 42.308 0.00 0.00 44.46 2.08
2059 6163 2.724977 TCTGTACTTCGTGGCTCTTG 57.275 50.000 0.00 0.00 0.00 3.02
2096 6201 3.584834 ACGAAATGCTGGGTAATTTTGC 58.415 40.909 0.00 0.00 32.54 3.68
2121 6226 1.139654 TGCTCTCGGATTCAGGAATGG 59.860 52.381 0.00 0.00 0.00 3.16
2129 6234 3.636300 CGGATTCAGGAATGGGCAATTTA 59.364 43.478 0.00 0.00 0.00 1.40
2138 6243 5.945191 AGGAATGGGCAATTTATTGGTTTTG 59.055 36.000 4.76 0.00 38.21 2.44
2147 6252 6.648725 GCAATTTATTGGTTTTGCCTGTTCTA 59.351 34.615 4.76 0.00 38.77 2.10
2217 6322 0.037734 TGCAGGACGTCAGAGGACTA 59.962 55.000 18.91 0.00 42.05 2.59
2262 6368 7.233689 CAGTTTTTGCCGCCTTTTATTTTATC 58.766 34.615 0.00 0.00 0.00 1.75
2283 6389 4.980573 TCTTTGGTAGGTAGCACATGTTT 58.019 39.130 0.00 0.00 32.83 2.83
2325 6431 3.432326 GCTAGATCGGGTCTGGAATGTTT 60.432 47.826 5.74 0.00 37.62 2.83
2369 6478 4.111577 TGTCCCTCTTGGTGATAGGAAAT 58.888 43.478 0.00 0.00 31.40 2.17
2430 6539 3.064545 CCACAAATCCTTTCAGATCGAGC 59.935 47.826 0.00 0.00 0.00 5.03
2431 6540 3.686241 CACAAATCCTTTCAGATCGAGCA 59.314 43.478 2.38 0.00 0.00 4.26
2440 6549 0.529992 CAGATCGAGCAGCTGCATGA 60.530 55.000 38.24 32.57 45.16 3.07
2485 6594 1.069906 GTACTGTGAAACGCCTTGCAG 60.070 52.381 0.00 0.00 42.39 4.41
2491 6600 0.944386 GAAACGCCTTGCAGTTCTCA 59.056 50.000 0.00 0.00 0.00 3.27
2564 6676 7.396055 CCAGGAACCACAATTTAAAATCTCCTA 59.604 37.037 0.00 0.00 0.00 2.94
2603 6715 4.880886 AAGTAGTTACCGCGTTTTTGTT 57.119 36.364 4.92 0.00 0.00 2.83
2666 6792 9.468532 AAAGAAAATTCAGTGCTTAATTCTGTC 57.531 29.630 0.00 0.00 0.00 3.51
2676 6802 5.626955 GTGCTTAATTCTGTCTTGTTCTTGC 59.373 40.000 0.00 0.00 0.00 4.01
2706 6832 0.686789 GGATTTTGGGCAAAGCAGGT 59.313 50.000 0.00 0.00 31.90 4.00
2950 7076 1.186267 AGACCAACGTCCTGGAGACC 61.186 60.000 13.22 0.15 43.08 3.85
2953 7079 0.396811 CCAACGTCCTGGAGACCTTT 59.603 55.000 0.00 0.00 43.08 3.11
3112 7238 0.818296 CCAAGTACTACTCGCTGGCT 59.182 55.000 0.00 0.00 0.00 4.75
3538 7664 3.493129 CGAGAGACTAATGAGAGAGGTCG 59.507 52.174 0.00 0.00 32.86 4.79
3733 7863 7.045126 AGTATTTCTGTACTCATGGCTCTAC 57.955 40.000 0.00 0.00 28.99 2.59
3737 7867 2.692557 CTGTACTCATGGCTCTACAGCT 59.307 50.000 0.00 0.00 46.03 4.24
3741 7871 2.955660 ACTCATGGCTCTACAGCTAGTC 59.044 50.000 0.00 0.00 46.03 2.59
3742 7872 2.295909 CTCATGGCTCTACAGCTAGTCC 59.704 54.545 0.00 0.00 46.03 3.85
3743 7873 1.342819 CATGGCTCTACAGCTAGTCCC 59.657 57.143 0.00 0.00 46.03 4.46
3744 7874 0.631753 TGGCTCTACAGCTAGTCCCT 59.368 55.000 0.00 0.00 46.03 4.20
3745 7875 1.324383 GGCTCTACAGCTAGTCCCTC 58.676 60.000 0.00 0.00 46.03 4.30
3746 7876 1.324383 GCTCTACAGCTAGTCCCTCC 58.676 60.000 0.00 0.00 43.09 4.30
3747 7877 1.600023 CTCTACAGCTAGTCCCTCCG 58.400 60.000 0.00 0.00 0.00 4.63
3748 7878 0.917533 TCTACAGCTAGTCCCTCCGT 59.082 55.000 0.00 0.00 0.00 4.69
3749 7879 1.284198 TCTACAGCTAGTCCCTCCGTT 59.716 52.381 0.00 0.00 0.00 4.44
3750 7880 1.677052 CTACAGCTAGTCCCTCCGTTC 59.323 57.143 0.00 0.00 0.00 3.95
3751 7881 0.971447 ACAGCTAGTCCCTCCGTTCC 60.971 60.000 0.00 0.00 0.00 3.62
3752 7882 1.381463 AGCTAGTCCCTCCGTTCCC 60.381 63.158 0.00 0.00 0.00 3.97
3753 7883 1.684734 GCTAGTCCCTCCGTTCCCA 60.685 63.158 0.00 0.00 0.00 4.37
3754 7884 1.262640 GCTAGTCCCTCCGTTCCCAA 61.263 60.000 0.00 0.00 0.00 4.12
3755 7885 1.272807 CTAGTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
3756 7886 1.838077 CTAGTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
3757 7887 1.961133 AGTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3758 7888 2.488836 AGTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3759 7889 2.850568 AGTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
3760 7890 3.268595 AGTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
3761 7891 3.380320 GTCCCTCCGTTCCCAAATATTTG 59.620 47.826 19.40 19.40 37.90 2.32
3762 7892 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
3763 7893 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
3764 7894 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
3765 7895 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
3766 7896 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
3767 7897 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
3768 7898 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
3769 7899 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
3770 7900 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
3771 7901 7.335924 CCGTTCCCAAATATTTGTCTTTCTAGA 59.664 37.037 23.24 7.17 36.45 2.43
3796 7926 9.485591 GACATTTCAAATAGTTACAACATACGG 57.514 33.333 0.00 0.00 0.00 4.02
3797 7927 9.221933 ACATTTCAAATAGTTACAACATACGGA 57.778 29.630 0.00 0.00 0.00 4.69
3843 7973 8.467402 AGTGTAGACTCATTCATTTTACTTCG 57.533 34.615 0.00 0.00 0.00 3.79
3844 7974 8.088981 AGTGTAGACTCATTCATTTTACTTCGT 58.911 33.333 0.00 0.00 0.00 3.85
3845 7975 9.350357 GTGTAGACTCATTCATTTTACTTCGTA 57.650 33.333 0.00 0.00 0.00 3.43
3851 7981 9.871238 ACTCATTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
3853 7983 9.863845 TCATTCATTTTACTTCGTATGTAGTCA 57.136 29.630 0.00 0.00 0.00 3.41
3891 8021 9.685828 TTCTAAAAGACAAATATTTGGAAACGG 57.314 29.630 27.43 14.00 42.34 4.44
3892 8022 9.069082 TCTAAAAGACAAATATTTGGAAACGGA 57.931 29.630 27.43 15.61 42.34 4.69
3893 8023 9.341899 CTAAAAGACAAATATTTGGAAACGGAG 57.658 33.333 27.43 14.39 42.34 4.63
3894 8024 5.897377 AGACAAATATTTGGAAACGGAGG 57.103 39.130 27.43 3.68 42.34 4.30
3895 8025 4.705023 AGACAAATATTTGGAAACGGAGGG 59.295 41.667 27.43 3.22 42.34 4.30
3896 8026 4.668636 ACAAATATTTGGAAACGGAGGGA 58.331 39.130 27.43 0.00 42.34 4.20
3897 8027 4.705023 ACAAATATTTGGAAACGGAGGGAG 59.295 41.667 27.43 2.64 42.34 4.30
3898 8028 4.586306 AATATTTGGAAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
3899 8029 5.703730 AATATTTGGAAACGGAGGGAGTA 57.296 39.130 0.00 0.00 0.00 2.59
3900 8030 3.629142 ATTTGGAAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3901 8031 2.019807 TTGGAAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
3902 8032 2.019807 TGGAAACGGAGGGAGTAGTT 57.980 50.000 0.00 0.00 0.00 2.24
3903 8033 1.621814 TGGAAACGGAGGGAGTAGTTG 59.378 52.381 0.00 0.00 0.00 3.16
3904 8034 1.622312 GGAAACGGAGGGAGTAGTTGT 59.378 52.381 0.00 0.00 0.00 3.32
3905 8035 2.353505 GGAAACGGAGGGAGTAGTTGTC 60.354 54.545 0.00 0.00 0.00 3.18
3906 8036 2.005370 AACGGAGGGAGTAGTTGTCA 57.995 50.000 0.00 0.00 0.00 3.58
3907 8037 2.233305 ACGGAGGGAGTAGTTGTCAT 57.767 50.000 0.00 0.00 0.00 3.06
3908 8038 1.825474 ACGGAGGGAGTAGTTGTCATG 59.175 52.381 0.00 0.00 0.00 3.07
3909 8039 1.471676 CGGAGGGAGTAGTTGTCATGC 60.472 57.143 0.00 0.00 0.00 4.06
3910 8040 1.555075 GGAGGGAGTAGTTGTCATGCA 59.445 52.381 0.00 0.00 0.00 3.96
3911 8041 2.622436 GAGGGAGTAGTTGTCATGCAC 58.378 52.381 0.00 0.00 0.00 4.57
3912 8042 1.977854 AGGGAGTAGTTGTCATGCACA 59.022 47.619 0.00 0.00 0.00 4.57
3913 8043 2.573462 AGGGAGTAGTTGTCATGCACAT 59.427 45.455 0.00 0.00 33.90 3.21
3914 8044 3.009473 AGGGAGTAGTTGTCATGCACATT 59.991 43.478 0.00 0.00 33.90 2.71
3915 8045 3.758554 GGGAGTAGTTGTCATGCACATTT 59.241 43.478 0.00 0.00 33.90 2.32
3916 8046 4.218417 GGGAGTAGTTGTCATGCACATTTT 59.782 41.667 0.00 0.00 33.90 1.82
3917 8047 5.278957 GGGAGTAGTTGTCATGCACATTTTT 60.279 40.000 0.00 0.00 33.90 1.94
3936 8066 5.492855 TTTTTCTTTCGGACATAGGAGGA 57.507 39.130 0.00 0.00 0.00 3.71
3937 8067 5.693769 TTTTCTTTCGGACATAGGAGGAT 57.306 39.130 0.00 0.00 0.00 3.24
3938 8068 5.693769 TTTCTTTCGGACATAGGAGGATT 57.306 39.130 0.00 0.00 0.00 3.01
3939 8069 6.801718 TTTCTTTCGGACATAGGAGGATTA 57.198 37.500 0.00 0.00 0.00 1.75
3940 8070 6.406692 TTCTTTCGGACATAGGAGGATTAG 57.593 41.667 0.00 0.00 0.00 1.73
3941 8071 4.281182 TCTTTCGGACATAGGAGGATTAGC 59.719 45.833 0.00 0.00 0.00 3.09
3942 8072 3.527507 TCGGACATAGGAGGATTAGCT 57.472 47.619 0.00 0.00 0.00 3.32
3943 8073 3.157881 TCGGACATAGGAGGATTAGCTG 58.842 50.000 0.00 0.00 0.00 4.24
3944 8074 2.232452 CGGACATAGGAGGATTAGCTGG 59.768 54.545 0.00 0.00 0.00 4.85
3945 8075 3.511477 GGACATAGGAGGATTAGCTGGA 58.489 50.000 0.00 0.00 0.00 3.86
3946 8076 3.904339 GGACATAGGAGGATTAGCTGGAA 59.096 47.826 0.00 0.00 0.00 3.53
3947 8077 4.020662 GGACATAGGAGGATTAGCTGGAAG 60.021 50.000 0.00 0.00 0.00 3.46
3948 8078 4.561752 ACATAGGAGGATTAGCTGGAAGT 58.438 43.478 0.00 0.00 35.30 3.01
3949 8079 4.971924 ACATAGGAGGATTAGCTGGAAGTT 59.028 41.667 0.00 0.00 35.30 2.66
3950 8080 5.430089 ACATAGGAGGATTAGCTGGAAGTTT 59.570 40.000 0.00 0.00 35.30 2.66
3951 8081 4.936685 AGGAGGATTAGCTGGAAGTTTT 57.063 40.909 0.00 0.00 35.30 2.43
3952 8082 4.593956 AGGAGGATTAGCTGGAAGTTTTG 58.406 43.478 0.00 0.00 35.30 2.44
3953 8083 3.129462 GGAGGATTAGCTGGAAGTTTTGC 59.871 47.826 0.00 0.00 35.30 3.68
3954 8084 4.013050 GAGGATTAGCTGGAAGTTTTGCT 58.987 43.478 0.00 0.00 39.30 3.91
3955 8085 5.179452 AGGATTAGCTGGAAGTTTTGCTA 57.821 39.130 0.00 0.00 37.02 3.49
3957 8087 6.010219 AGGATTAGCTGGAAGTTTTGCTAAA 58.990 36.000 16.41 0.00 46.51 1.85
3958 8088 6.493458 AGGATTAGCTGGAAGTTTTGCTAAAA 59.507 34.615 16.41 0.00 46.51 1.52
3959 8089 6.808704 GGATTAGCTGGAAGTTTTGCTAAAAG 59.191 38.462 16.41 0.00 46.51 2.27
3960 8090 6.952773 TTAGCTGGAAGTTTTGCTAAAAGA 57.047 33.333 0.00 0.00 42.61 2.52
3961 8091 5.188327 AGCTGGAAGTTTTGCTAAAAGAC 57.812 39.130 0.00 0.00 35.30 3.01
3962 8092 4.644685 AGCTGGAAGTTTTGCTAAAAGACA 59.355 37.500 0.00 0.00 35.30 3.41
3963 8093 5.302823 AGCTGGAAGTTTTGCTAAAAGACAT 59.697 36.000 0.00 0.00 35.30 3.06
3964 8094 5.985530 GCTGGAAGTTTTGCTAAAAGACATT 59.014 36.000 0.00 0.00 35.30 2.71
3965 8095 6.479990 GCTGGAAGTTTTGCTAAAAGACATTT 59.520 34.615 0.00 0.00 35.30 2.32
3966 8096 7.651704 GCTGGAAGTTTTGCTAAAAGACATTTA 59.348 33.333 0.00 0.00 35.30 1.40
3980 8110 8.579850 AAAAGACATTTAGATGTGCCATAAGA 57.420 30.769 3.18 0.00 46.27 2.10
3981 8111 7.798596 AAGACATTTAGATGTGCCATAAGAG 57.201 36.000 3.18 0.00 46.27 2.85
3982 8112 5.762218 AGACATTTAGATGTGCCATAAGAGC 59.238 40.000 3.18 0.00 46.27 4.09
3983 8113 5.439721 ACATTTAGATGTGCCATAAGAGCA 58.560 37.500 0.00 0.00 44.64 4.26
3984 8114 5.887598 ACATTTAGATGTGCCATAAGAGCAA 59.112 36.000 0.00 0.00 44.64 3.91
3985 8115 6.548622 ACATTTAGATGTGCCATAAGAGCAAT 59.451 34.615 0.00 0.00 44.64 3.56
3986 8116 7.069085 ACATTTAGATGTGCCATAAGAGCAATT 59.931 33.333 0.00 0.00 44.64 2.32
3987 8117 6.624352 TTAGATGTGCCATAAGAGCAATTC 57.376 37.500 0.00 0.00 43.02 2.17
3988 8118 3.887716 AGATGTGCCATAAGAGCAATTCC 59.112 43.478 0.00 0.00 43.02 3.01
3989 8119 3.084536 TGTGCCATAAGAGCAATTCCA 57.915 42.857 0.00 0.00 43.02 3.53
3990 8120 3.429492 TGTGCCATAAGAGCAATTCCAA 58.571 40.909 0.00 0.00 43.02 3.53
3991 8121 3.193267 TGTGCCATAAGAGCAATTCCAAC 59.807 43.478 0.00 0.00 43.02 3.77
3992 8122 2.423185 TGCCATAAGAGCAATTCCAACG 59.577 45.455 0.00 0.00 37.28 4.10
3993 8123 2.796032 GCCATAAGAGCAATTCCAACGC 60.796 50.000 0.00 0.00 0.00 4.84
3994 8124 2.539547 CCATAAGAGCAATTCCAACGCG 60.540 50.000 3.53 3.53 0.00 6.01
3995 8125 2.087501 TAAGAGCAATTCCAACGCGA 57.912 45.000 15.93 0.00 0.00 5.87
3996 8126 0.517316 AAGAGCAATTCCAACGCGAC 59.483 50.000 15.93 0.00 0.00 5.19
3997 8127 1.225745 GAGCAATTCCAACGCGACG 60.226 57.895 15.93 2.08 0.00 5.12
3998 8128 1.623081 GAGCAATTCCAACGCGACGA 61.623 55.000 15.93 0.95 0.00 4.20
4011 8141 1.083489 GCGACGATTCAAATGGGTCA 58.917 50.000 0.00 0.00 0.00 4.02
4027 8157 0.531974 GTCAGCTTGACCGTCCAACA 60.532 55.000 0.00 0.00 41.37 3.33
4123 8257 1.602323 TCAATCGCCGGCCAAAGTT 60.602 52.632 23.46 5.70 0.00 2.66
4124 8258 1.175983 TCAATCGCCGGCCAAAGTTT 61.176 50.000 23.46 5.14 0.00 2.66
4132 8266 3.571571 GCCGGCCAAAGTTTACTTAAAG 58.428 45.455 18.11 0.00 34.61 1.85
4217 8358 3.305516 CGCCTTGCCCTTGCCTTT 61.306 61.111 0.00 0.00 36.33 3.11
4258 8399 0.815734 GAGGTCGATGAAGACGGGAA 59.184 55.000 0.00 0.00 41.81 3.97
4261 8402 1.337447 GGTCGATGAAGACGGGAACAA 60.337 52.381 0.00 0.00 41.81 2.83
4262 8403 2.409975 GTCGATGAAGACGGGAACAAA 58.590 47.619 0.00 0.00 0.00 2.83
4274 8415 0.613012 GGAACAAAGCCAGCCCATCT 60.613 55.000 0.00 0.00 0.00 2.90
4290 8431 1.686325 ATCTGAACGCCGCCTGGTAT 61.686 55.000 0.00 0.00 37.67 2.73
4367 8517 3.535962 GCGCTCCTCCTCCTCCTG 61.536 72.222 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.320788 GGCATGACTTAGAGGCATAAATGC 60.321 45.833 6.38 6.38 43.49 3.56
7 8 5.068636 AGGCATGACTTAGAGGCATAAATG 58.931 41.667 0.00 0.00 43.49 2.32
8 9 5.312079 GAGGCATGACTTAGAGGCATAAAT 58.688 41.667 0.41 0.00 43.49 1.40
9 10 4.708177 GAGGCATGACTTAGAGGCATAAA 58.292 43.478 0.41 0.00 43.49 1.40
10 11 3.243873 CGAGGCATGACTTAGAGGCATAA 60.244 47.826 0.41 0.00 43.49 1.90
11 12 2.297315 CGAGGCATGACTTAGAGGCATA 59.703 50.000 0.41 0.00 43.49 3.14
13 14 0.461548 CGAGGCATGACTTAGAGGCA 59.538 55.000 0.41 0.00 37.84 4.75
14 15 0.747255 TCGAGGCATGACTTAGAGGC 59.253 55.000 0.41 0.00 0.00 4.70
15 16 1.751351 TGTCGAGGCATGACTTAGAGG 59.249 52.381 0.41 0.00 37.26 3.69
16 17 2.164422 TGTGTCGAGGCATGACTTAGAG 59.836 50.000 0.41 0.00 37.26 2.43
17 18 2.167662 TGTGTCGAGGCATGACTTAGA 58.832 47.619 0.41 2.54 37.26 2.10
18 19 2.654749 TGTGTCGAGGCATGACTTAG 57.345 50.000 0.41 0.00 37.26 2.18
19 20 2.418609 CCATGTGTCGAGGCATGACTTA 60.419 50.000 23.10 0.00 43.60 2.24
20 21 1.676916 CCATGTGTCGAGGCATGACTT 60.677 52.381 23.10 0.00 43.60 3.01
21 22 0.107993 CCATGTGTCGAGGCATGACT 60.108 55.000 23.10 0.00 43.60 3.41
22 23 1.091771 CCCATGTGTCGAGGCATGAC 61.092 60.000 23.10 0.00 43.60 3.06
23 24 1.221566 CCCATGTGTCGAGGCATGA 59.778 57.895 23.10 0.00 43.60 3.07
24 25 0.812811 CTCCCATGTGTCGAGGCATG 60.813 60.000 17.49 17.49 41.37 4.06
25 26 0.977627 TCTCCCATGTGTCGAGGCAT 60.978 55.000 0.00 0.00 0.00 4.40
26 27 0.977627 ATCTCCCATGTGTCGAGGCA 60.978 55.000 0.00 0.00 0.00 4.75
27 28 1.040646 TATCTCCCATGTGTCGAGGC 58.959 55.000 0.00 0.00 0.00 4.70
28 29 3.119316 GCTATATCTCCCATGTGTCGAGG 60.119 52.174 0.00 0.00 0.00 4.63
29 30 3.119316 GGCTATATCTCCCATGTGTCGAG 60.119 52.174 0.00 0.00 0.00 4.04
30 31 2.826128 GGCTATATCTCCCATGTGTCGA 59.174 50.000 0.00 0.00 0.00 4.20
31 32 2.416027 CGGCTATATCTCCCATGTGTCG 60.416 54.545 0.00 0.00 0.00 4.35
32 33 2.826128 TCGGCTATATCTCCCATGTGTC 59.174 50.000 0.00 0.00 0.00 3.67
33 34 2.889512 TCGGCTATATCTCCCATGTGT 58.110 47.619 0.00 0.00 0.00 3.72
34 35 3.961480 TTCGGCTATATCTCCCATGTG 57.039 47.619 0.00 0.00 0.00 3.21
35 36 3.131223 CGATTCGGCTATATCTCCCATGT 59.869 47.826 0.00 0.00 0.00 3.21
36 37 3.131223 ACGATTCGGCTATATCTCCCATG 59.869 47.826 11.29 0.00 0.00 3.66
37 38 3.131223 CACGATTCGGCTATATCTCCCAT 59.869 47.826 11.29 0.00 0.00 4.00
38 39 2.492088 CACGATTCGGCTATATCTCCCA 59.508 50.000 11.29 0.00 0.00 4.37
39 40 2.159226 CCACGATTCGGCTATATCTCCC 60.159 54.545 11.29 0.00 0.00 4.30
40 41 2.159226 CCCACGATTCGGCTATATCTCC 60.159 54.545 11.29 0.00 0.00 3.71
41 42 2.753452 TCCCACGATTCGGCTATATCTC 59.247 50.000 11.29 0.00 0.00 2.75
42 43 2.755655 CTCCCACGATTCGGCTATATCT 59.244 50.000 11.29 0.00 0.00 1.98
43 44 2.492484 ACTCCCACGATTCGGCTATATC 59.508 50.000 11.29 0.00 0.00 1.63
44 45 2.526432 ACTCCCACGATTCGGCTATAT 58.474 47.619 11.29 0.00 0.00 0.86
45 46 1.991121 ACTCCCACGATTCGGCTATA 58.009 50.000 11.29 0.00 0.00 1.31
46 47 1.120530 AACTCCCACGATTCGGCTAT 58.879 50.000 11.29 0.00 0.00 2.97
47 48 1.406539 GTAACTCCCACGATTCGGCTA 59.593 52.381 11.29 0.00 0.00 3.93
48 49 0.175073 GTAACTCCCACGATTCGGCT 59.825 55.000 11.29 0.00 0.00 5.52
49 50 0.108520 TGTAACTCCCACGATTCGGC 60.109 55.000 11.29 0.00 0.00 5.54
50 51 2.373540 TTGTAACTCCCACGATTCGG 57.626 50.000 11.29 0.00 0.00 4.30
51 52 2.607635 CCATTGTAACTCCCACGATTCG 59.392 50.000 4.14 4.14 0.00 3.34
52 53 2.943033 CCCATTGTAACTCCCACGATTC 59.057 50.000 0.00 0.00 0.00 2.52
53 54 2.574369 TCCCATTGTAACTCCCACGATT 59.426 45.455 0.00 0.00 0.00 3.34
54 55 2.170607 CTCCCATTGTAACTCCCACGAT 59.829 50.000 0.00 0.00 0.00 3.73
55 56 1.553248 CTCCCATTGTAACTCCCACGA 59.447 52.381 0.00 0.00 0.00 4.35
56 57 1.553248 TCTCCCATTGTAACTCCCACG 59.447 52.381 0.00 0.00 0.00 4.94
57 58 2.572104 ACTCTCCCATTGTAACTCCCAC 59.428 50.000 0.00 0.00 0.00 4.61
58 59 2.915869 ACTCTCCCATTGTAACTCCCA 58.084 47.619 0.00 0.00 0.00 4.37
59 60 3.009143 ACAACTCTCCCATTGTAACTCCC 59.991 47.826 0.00 0.00 37.27 4.30
60 61 4.287766 ACAACTCTCCCATTGTAACTCC 57.712 45.455 0.00 0.00 37.27 3.85
61 62 4.455877 CCAACAACTCTCCCATTGTAACTC 59.544 45.833 0.00 0.00 38.08 3.01
62 63 4.141251 ACCAACAACTCTCCCATTGTAACT 60.141 41.667 0.00 0.00 38.08 2.24
63 64 4.023193 CACCAACAACTCTCCCATTGTAAC 60.023 45.833 0.00 0.00 38.08 2.50
64 65 4.141287 CACCAACAACTCTCCCATTGTAA 58.859 43.478 0.00 0.00 38.08 2.41
65 66 3.392947 TCACCAACAACTCTCCCATTGTA 59.607 43.478 0.00 0.00 38.08 2.41
66 67 2.174639 TCACCAACAACTCTCCCATTGT 59.825 45.455 0.00 0.00 40.76 2.71
67 68 2.862541 TCACCAACAACTCTCCCATTG 58.137 47.619 0.00 0.00 0.00 2.82
68 69 3.074390 TCATCACCAACAACTCTCCCATT 59.926 43.478 0.00 0.00 0.00 3.16
109 110 0.981277 GGGAACATTCCTCCCGGAGA 60.981 60.000 16.69 0.00 46.72 3.71
120 121 3.176297 TTCCGCTGGGGGAACATT 58.824 55.556 13.87 0.00 41.08 2.71
245 249 3.300388 TCTGGTGCCCATCTTCTAGTAG 58.700 50.000 0.00 0.00 30.82 2.57
433 439 9.121658 GAAAAAGCTATGTTAGGCTACCTATTT 57.878 33.333 0.00 0.00 35.87 1.40
462 468 0.250234 TGACGGCTGGAATTCTGGAG 59.750 55.000 5.23 0.74 0.00 3.86
481 487 5.513267 GGTTCACACAAAGAGGGAGAATACT 60.513 44.000 0.00 0.00 32.79 2.12
616 623 6.294473 CCATCAGCAAAGTCTGACCTATAAT 58.706 40.000 3.76 0.00 44.88 1.28
617 624 5.396772 CCCATCAGCAAAGTCTGACCTATAA 60.397 44.000 3.76 0.00 44.88 0.98
618 625 4.101585 CCCATCAGCAAAGTCTGACCTATA 59.898 45.833 3.76 0.00 44.88 1.31
619 626 3.118112 CCCATCAGCAAAGTCTGACCTAT 60.118 47.826 3.76 0.00 44.88 2.57
620 627 2.237143 CCCATCAGCAAAGTCTGACCTA 59.763 50.000 3.76 0.00 44.88 3.08
621 628 1.004044 CCCATCAGCAAAGTCTGACCT 59.996 52.381 3.76 0.00 44.88 3.85
622 629 1.003580 TCCCATCAGCAAAGTCTGACC 59.996 52.381 3.76 0.00 44.88 4.02
623 630 2.079925 GTCCCATCAGCAAAGTCTGAC 58.920 52.381 0.00 0.00 44.88 3.51
624 631 1.003580 GGTCCCATCAGCAAAGTCTGA 59.996 52.381 0.00 0.00 45.97 3.27
625 632 1.004044 AGGTCCCATCAGCAAAGTCTG 59.996 52.381 0.00 0.00 35.46 3.51
626 633 1.280421 GAGGTCCCATCAGCAAAGTCT 59.720 52.381 0.00 0.00 0.00 3.24
627 634 1.003580 TGAGGTCCCATCAGCAAAGTC 59.996 52.381 0.00 0.00 0.00 3.01
628 635 1.004044 CTGAGGTCCCATCAGCAAAGT 59.996 52.381 0.00 0.00 37.93 2.66
629 636 1.681166 CCTGAGGTCCCATCAGCAAAG 60.681 57.143 3.09 0.00 42.36 2.77
630 637 0.329261 CCTGAGGTCCCATCAGCAAA 59.671 55.000 3.09 0.00 42.36 3.68
631 638 1.993653 CCTGAGGTCCCATCAGCAA 59.006 57.895 3.09 0.00 42.36 3.91
632 639 2.673200 GCCTGAGGTCCCATCAGCA 61.673 63.158 0.00 0.00 42.36 4.41
633 640 2.191641 GCCTGAGGTCCCATCAGC 59.808 66.667 0.00 0.00 42.36 4.26
634 641 2.503061 CGCCTGAGGTCCCATCAG 59.497 66.667 0.00 1.80 43.15 2.90
635 642 3.083349 CCGCCTGAGGTCCCATCA 61.083 66.667 0.00 0.00 0.00 3.07
636 643 4.554036 GCCGCCTGAGGTCCCATC 62.554 72.222 0.00 0.00 0.00 3.51
653 660 3.151022 GTCTCCTCCCTCCTGCCG 61.151 72.222 0.00 0.00 0.00 5.69
654 661 3.151022 CGTCTCCTCCCTCCTGCC 61.151 72.222 0.00 0.00 0.00 4.85
655 662 2.043852 TCGTCTCCTCCCTCCTGC 60.044 66.667 0.00 0.00 0.00 4.85
656 663 1.454847 CCTCGTCTCCTCCCTCCTG 60.455 68.421 0.00 0.00 0.00 3.86
657 664 1.619975 TCCTCGTCTCCTCCCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
658 665 1.152839 CTCCTCGTCTCCTCCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
659 666 0.179029 CTCTCCTCGTCTCCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
660 667 1.641552 CCTCTCCTCGTCTCCTCCCT 61.642 65.000 0.00 0.00 0.00 4.20
661 668 1.152839 CCTCTCCTCGTCTCCTCCC 60.153 68.421 0.00 0.00 0.00 4.30
662 669 0.179029 CTCCTCTCCTCGTCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
663 670 0.179029 CCTCCTCTCCTCGTCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
664 671 1.919771 CCTCCTCTCCTCGTCTCCT 59.080 63.158 0.00 0.00 0.00 3.69
665 672 1.826487 GCCTCCTCTCCTCGTCTCC 60.826 68.421 0.00 0.00 0.00 3.71
666 673 1.826487 GGCCTCCTCTCCTCGTCTC 60.826 68.421 0.00 0.00 0.00 3.36
667 674 0.989212 TAGGCCTCCTCTCCTCGTCT 60.989 60.000 9.68 0.00 34.61 4.18
668 675 0.536460 CTAGGCCTCCTCTCCTCGTC 60.536 65.000 9.68 0.00 34.61 4.20
669 676 1.534697 CTAGGCCTCCTCTCCTCGT 59.465 63.158 9.68 0.00 34.61 4.18
670 677 1.228429 CCTAGGCCTCCTCTCCTCG 60.228 68.421 9.68 0.00 34.61 4.63
671 678 1.155155 CCCTAGGCCTCCTCTCCTC 59.845 68.421 9.68 0.00 34.61 3.71
672 679 3.094751 GCCCTAGGCCTCCTCTCCT 62.095 68.421 9.68 0.00 44.06 3.69
673 680 2.525629 GCCCTAGGCCTCCTCTCC 60.526 72.222 9.68 0.00 44.06 3.71
694 701 3.118454 ACGAGGGCAATCGCGTTG 61.118 61.111 5.77 11.39 46.60 4.10
695 702 3.118454 CACGAGGGCAATCGCGTT 61.118 61.111 5.77 0.00 46.60 4.84
696 703 3.876589 AACACGAGGGCAATCGCGT 62.877 57.895 5.77 5.38 46.60 6.01
697 704 3.118454 AACACGAGGGCAATCGCG 61.118 61.111 0.00 0.00 46.60 5.87
698 705 2.480555 CAACACGAGGGCAATCGC 59.519 61.111 10.76 0.00 46.60 4.58
700 707 0.392461 TAGGCAACACGAGGGCAATC 60.392 55.000 0.00 0.00 41.41 2.67
701 708 0.392998 CTAGGCAACACGAGGGCAAT 60.393 55.000 0.00 0.00 41.41 3.56
702 709 1.003839 CTAGGCAACACGAGGGCAA 60.004 57.895 0.00 0.00 41.41 4.52
703 710 2.662596 CTAGGCAACACGAGGGCA 59.337 61.111 0.00 0.00 41.41 5.36
704 711 2.125106 CCTAGGCAACACGAGGGC 60.125 66.667 0.00 0.00 41.41 5.19
705 712 2.584608 CCCTAGGCAACACGAGGG 59.415 66.667 2.05 0.00 44.13 4.30
706 713 0.673644 CAACCCTAGGCAACACGAGG 60.674 60.000 2.05 0.00 41.41 4.63
707 714 1.298859 GCAACCCTAGGCAACACGAG 61.299 60.000 2.05 0.00 41.41 4.18
708 715 1.302192 GCAACCCTAGGCAACACGA 60.302 57.895 2.05 0.00 41.41 4.35
709 716 2.677003 CGCAACCCTAGGCAACACG 61.677 63.158 2.05 0.00 41.41 4.49
710 717 1.302192 TCGCAACCCTAGGCAACAC 60.302 57.895 2.05 0.00 41.41 3.32
711 718 1.302192 GTCGCAACCCTAGGCAACA 60.302 57.895 2.05 0.00 41.41 3.33
712 719 2.388232 CGTCGCAACCCTAGGCAAC 61.388 63.158 2.05 0.00 0.00 4.17
713 720 2.047655 CGTCGCAACCCTAGGCAA 60.048 61.111 2.05 0.00 0.00 4.52
714 721 4.077184 CCGTCGCAACCCTAGGCA 62.077 66.667 2.05 0.00 0.00 4.75
715 722 4.832608 CCCGTCGCAACCCTAGGC 62.833 72.222 2.05 0.00 0.00 3.93
716 723 4.157120 CCCCGTCGCAACCCTAGG 62.157 72.222 0.06 0.06 0.00 3.02
717 724 4.157120 CCCCCGTCGCAACCCTAG 62.157 72.222 0.00 0.00 0.00 3.02
733 740 3.647771 GACACCCCTGTCCCACCC 61.648 72.222 0.00 0.00 41.06 4.61
739 746 3.311110 TGGCGAGACACCCCTGTC 61.311 66.667 0.00 0.00 46.50 3.51
740 747 3.626924 GTGGCGAGACACCCCTGT 61.627 66.667 0.00 0.00 35.34 4.00
746 753 0.032952 TTGTAGTGGTGGCGAGACAC 59.967 55.000 0.00 0.00 40.60 3.67
747 754 0.753867 TTTGTAGTGGTGGCGAGACA 59.246 50.000 0.00 0.00 0.00 3.41
748 755 1.873698 TTTTGTAGTGGTGGCGAGAC 58.126 50.000 0.00 0.00 0.00 3.36
749 756 2.851263 ATTTTGTAGTGGTGGCGAGA 57.149 45.000 0.00 0.00 0.00 4.04
750 757 2.811431 TGAATTTTGTAGTGGTGGCGAG 59.189 45.455 0.00 0.00 0.00 5.03
751 758 2.852449 TGAATTTTGTAGTGGTGGCGA 58.148 42.857 0.00 0.00 0.00 5.54
752 759 3.848272 ATGAATTTTGTAGTGGTGGCG 57.152 42.857 0.00 0.00 0.00 5.69
753 760 5.897377 AGTATGAATTTTGTAGTGGTGGC 57.103 39.130 0.00 0.00 0.00 5.01
754 761 7.120579 TGCTTAGTATGAATTTTGTAGTGGTGG 59.879 37.037 0.00 0.00 0.00 4.61
755 762 8.039603 TGCTTAGTATGAATTTTGTAGTGGTG 57.960 34.615 0.00 0.00 0.00 4.17
795 802 4.586421 TGGTTGATGGCATGTAGTGAAAAA 59.414 37.500 3.81 0.00 0.00 1.94
810 817 5.902613 AGAATGTGGTTGTATGGTTGATG 57.097 39.130 0.00 0.00 0.00 3.07
821 828 7.848223 TGTAGTGATTGATAGAATGTGGTTG 57.152 36.000 0.00 0.00 0.00 3.77
825 832 9.712359 CAAACATGTAGTGATTGATAGAATGTG 57.288 33.333 0.00 0.00 41.60 3.21
828 835 8.400947 GTGCAAACATGTAGTGATTGATAGAAT 58.599 33.333 10.66 0.00 41.60 2.40
829 836 7.148255 GGTGCAAACATGTAGTGATTGATAGAA 60.148 37.037 10.66 0.00 41.60 2.10
831 838 6.093909 TGGTGCAAACATGTAGTGATTGATAG 59.906 38.462 10.66 0.00 41.60 2.08
850 857 1.855295 ATGCTGATTTGGATGGTGCA 58.145 45.000 0.00 0.00 0.00 4.57
905 912 6.094742 TGTCTCTATTACTCTCTGTTGCTCTG 59.905 42.308 0.00 0.00 0.00 3.35
915 922 6.655003 CCTCCTCTCATGTCTCTATTACTCTC 59.345 46.154 0.00 0.00 0.00 3.20
920 927 7.126061 TGTTTCCTCCTCTCATGTCTCTATTA 58.874 38.462 0.00 0.00 0.00 0.98
929 936 4.699257 CCTTCTTTGTTTCCTCCTCTCATG 59.301 45.833 0.00 0.00 0.00 3.07
938 945 4.082125 CCTGTATGCCTTCTTTGTTTCCT 58.918 43.478 0.00 0.00 0.00 3.36
939 946 4.079253 TCCTGTATGCCTTCTTTGTTTCC 58.921 43.478 0.00 0.00 0.00 3.13
942 949 4.640771 TCTCCTGTATGCCTTCTTTGTT 57.359 40.909 0.00 0.00 0.00 2.83
944 951 4.633565 GTCTTCTCCTGTATGCCTTCTTTG 59.366 45.833 0.00 0.00 0.00 2.77
945 952 4.621747 CGTCTTCTCCTGTATGCCTTCTTT 60.622 45.833 0.00 0.00 0.00 2.52
946 953 3.118956 CGTCTTCTCCTGTATGCCTTCTT 60.119 47.826 0.00 0.00 0.00 2.52
950 965 2.145397 TCGTCTTCTCCTGTATGCCT 57.855 50.000 0.00 0.00 0.00 4.75
963 978 0.032017 AGTCCCCTGCCTATCGTCTT 60.032 55.000 0.00 0.00 0.00 3.01
968 983 1.429687 TCCTCTAGTCCCCTGCCTATC 59.570 57.143 0.00 0.00 0.00 2.08
970 985 0.854218 CTCCTCTAGTCCCCTGCCTA 59.146 60.000 0.00 0.00 0.00 3.93
976 991 0.757561 GGTGAGCTCCTCTAGTCCCC 60.758 65.000 12.15 0.00 0.00 4.81
1005 1020 1.388065 CCGTCTCTCGAGCCATCCTT 61.388 60.000 7.81 0.00 42.86 3.36
1009 1024 2.835431 CCCCGTCTCTCGAGCCAT 60.835 66.667 7.81 0.00 42.86 4.40
1030 1045 2.203181 GCCATGCAGGAGCTCCTC 60.203 66.667 33.06 25.01 46.65 3.71
1041 1056 0.825010 CCCCTTCCAGTATGCCATGC 60.825 60.000 0.00 0.00 31.97 4.06
1048 1063 3.861797 CGCCGCCCCTTCCAGTAT 61.862 66.667 0.00 0.00 0.00 2.12
1070 1085 2.184322 CCATCACCGTCACCTCCG 59.816 66.667 0.00 0.00 0.00 4.63
1079 1094 0.812811 CTCCTCATGTGCCATCACCG 60.813 60.000 0.00 0.00 42.46 4.94
1082 1097 0.176449 CGTCTCCTCATGTGCCATCA 59.824 55.000 0.00 0.00 0.00 3.07
1086 1101 2.187946 CCCGTCTCCTCATGTGCC 59.812 66.667 0.00 0.00 0.00 5.01
1091 1106 3.148279 GTCGCCCCGTCTCCTCAT 61.148 66.667 0.00 0.00 0.00 2.90
1154 1169 1.959282 GGTATCGTTAGATCCACCGGT 59.041 52.381 0.00 0.00 38.26 5.28
1159 1174 2.963101 CACCCTGGTATCGTTAGATCCA 59.037 50.000 0.00 0.00 38.26 3.41
1164 1179 3.488721 CGACTTCACCCTGGTATCGTTAG 60.489 52.174 0.00 0.00 0.00 2.34
1166 1181 1.203994 CGACTTCACCCTGGTATCGTT 59.796 52.381 0.00 0.00 0.00 3.85
1170 1185 1.905512 GGCGACTTCACCCTGGTAT 59.094 57.895 0.00 0.00 0.00 2.73
1172 1187 4.003788 CGGCGACTTCACCCTGGT 62.004 66.667 0.00 0.00 0.00 4.00
1173 1188 4.760047 CCGGCGACTTCACCCTGG 62.760 72.222 9.30 0.00 0.00 4.45
1187 4977 4.760047 CCACCTCGAACCAGCCGG 62.760 72.222 0.00 0.00 38.77 6.13
1195 4985 1.607178 TTCCCTACGCCACCTCGAA 60.607 57.895 0.00 0.00 0.00 3.71
1230 5030 1.224592 CCCGTCCCCAATCAGGAAG 59.775 63.158 0.00 0.00 41.22 3.46
1232 5032 3.407967 GCCCGTCCCCAATCAGGA 61.408 66.667 0.00 0.00 41.22 3.86
1237 5037 4.096003 CACTCGCCCGTCCCCAAT 62.096 66.667 0.00 0.00 0.00 3.16
1248 5048 2.741211 GTTCGTTCCCCCACTCGC 60.741 66.667 0.00 0.00 0.00 5.03
1255 5055 1.359459 GAGCATCGTGTTCGTTCCCC 61.359 60.000 0.00 0.00 38.33 4.81
1277 5077 0.783579 GCGTCTGTACCGCGTAAAAA 59.216 50.000 4.92 0.00 41.91 1.94
1278 5078 2.433637 GCGTCTGTACCGCGTAAAA 58.566 52.632 4.92 0.00 41.91 1.52
1279 5079 4.151417 GCGTCTGTACCGCGTAAA 57.849 55.556 4.92 0.00 41.91 2.01
1285 5085 2.651232 GCGCTAGCGTCTGTACCG 60.651 66.667 35.21 7.53 42.09 4.02
1295 5095 2.323959 GATGAGTGTATGAGCGCTAGC 58.676 52.381 11.50 4.06 45.58 3.42
1296 5096 2.556189 AGGATGAGTGTATGAGCGCTAG 59.444 50.000 11.50 0.00 0.00 3.42
1297 5097 2.587522 AGGATGAGTGTATGAGCGCTA 58.412 47.619 11.50 0.00 0.00 4.26
1298 5098 1.407936 AGGATGAGTGTATGAGCGCT 58.592 50.000 11.27 11.27 0.00 5.92
1299 5099 2.231215 AAGGATGAGTGTATGAGCGC 57.769 50.000 0.00 0.00 0.00 5.92
1300 5100 5.126396 TCATAAGGATGAGTGTATGAGCG 57.874 43.478 0.00 0.00 37.15 5.03
1301 5101 6.201806 GTGTTCATAAGGATGAGTGTATGAGC 59.798 42.308 0.00 0.00 43.03 4.26
1302 5102 6.419116 CGTGTTCATAAGGATGAGTGTATGAG 59.581 42.308 0.00 0.00 43.03 2.90
1303 5103 6.096282 TCGTGTTCATAAGGATGAGTGTATGA 59.904 38.462 0.00 0.00 43.03 2.15
1304 5104 6.273071 TCGTGTTCATAAGGATGAGTGTATG 58.727 40.000 0.00 0.00 43.03 2.39
1305 5105 6.465439 TCGTGTTCATAAGGATGAGTGTAT 57.535 37.500 0.00 0.00 43.03 2.29
1306 5106 5.678871 GCTCGTGTTCATAAGGATGAGTGTA 60.679 44.000 0.00 0.00 43.03 2.90
1307 5107 4.748892 CTCGTGTTCATAAGGATGAGTGT 58.251 43.478 0.00 0.00 43.03 3.55
1308 5108 3.553511 GCTCGTGTTCATAAGGATGAGTG 59.446 47.826 0.00 0.00 43.03 3.51
1309 5109 3.449018 AGCTCGTGTTCATAAGGATGAGT 59.551 43.478 0.00 0.00 43.03 3.41
1310 5110 4.052159 AGCTCGTGTTCATAAGGATGAG 57.948 45.455 0.00 0.00 43.03 2.90
1311 5111 5.069119 ACATAGCTCGTGTTCATAAGGATGA 59.931 40.000 0.00 0.00 40.45 2.92
1312 5112 5.292765 ACATAGCTCGTGTTCATAAGGATG 58.707 41.667 0.00 0.00 0.00 3.51
1313 5113 5.537300 ACATAGCTCGTGTTCATAAGGAT 57.463 39.130 0.00 0.00 0.00 3.24
1314 5114 5.826208 TCTACATAGCTCGTGTTCATAAGGA 59.174 40.000 9.63 0.00 0.00 3.36
1315 5115 6.073327 TCTACATAGCTCGTGTTCATAAGG 57.927 41.667 9.63 0.00 0.00 2.69
1316 5116 6.521477 CGATCTACATAGCTCGTGTTCATAAG 59.479 42.308 9.63 2.28 37.23 1.73
1317 5117 6.204108 TCGATCTACATAGCTCGTGTTCATAA 59.796 38.462 9.63 0.00 41.26 1.90
1318 5118 5.699458 TCGATCTACATAGCTCGTGTTCATA 59.301 40.000 9.63 0.00 41.26 2.15
1319 5119 4.515567 TCGATCTACATAGCTCGTGTTCAT 59.484 41.667 9.63 3.46 41.26 2.57
1320 5120 3.875134 TCGATCTACATAGCTCGTGTTCA 59.125 43.478 9.63 0.00 41.26 3.18
1321 5121 4.469625 TCGATCTACATAGCTCGTGTTC 57.530 45.455 9.63 2.19 41.26 3.18
1322 5122 4.095932 TGTTCGATCTACATAGCTCGTGTT 59.904 41.667 9.63 0.00 41.26 3.32
1323 5123 3.626217 TGTTCGATCTACATAGCTCGTGT 59.374 43.478 10.87 9.34 41.26 4.49
1324 5124 4.210832 TGTTCGATCTACATAGCTCGTG 57.789 45.455 10.87 0.00 41.26 4.35
1325 5125 5.440234 AATGTTCGATCTACATAGCTCGT 57.560 39.130 10.87 0.00 41.26 4.18
1326 5126 6.346120 CCAAAATGTTCGATCTACATAGCTCG 60.346 42.308 9.81 5.94 41.70 5.03
1327 5127 6.073548 CCCAAAATGTTCGATCTACATAGCTC 60.074 42.308 9.81 0.00 35.26 4.09
1328 5128 5.760253 CCCAAAATGTTCGATCTACATAGCT 59.240 40.000 9.81 0.00 35.26 3.32
1329 5129 5.560953 GCCCAAAATGTTCGATCTACATAGC 60.561 44.000 9.81 6.12 35.26 2.97
1330 5130 5.049405 GGCCCAAAATGTTCGATCTACATAG 60.049 44.000 9.81 5.06 35.26 2.23
1331 5131 4.819630 GGCCCAAAATGTTCGATCTACATA 59.180 41.667 9.81 0.00 35.26 2.29
1332 5132 3.632145 GGCCCAAAATGTTCGATCTACAT 59.368 43.478 0.00 4.91 37.82 2.29
1333 5133 3.013921 GGCCCAAAATGTTCGATCTACA 58.986 45.455 0.00 0.73 0.00 2.74
1334 5134 3.279434 AGGCCCAAAATGTTCGATCTAC 58.721 45.455 0.00 0.00 0.00 2.59
1343 5143 0.827507 ACAAGCGAGGCCCAAAATGT 60.828 50.000 0.00 0.00 0.00 2.71
1345 5145 0.827507 ACACAAGCGAGGCCCAAAAT 60.828 50.000 0.00 0.00 0.00 1.82
1352 5152 3.050275 GGGACACACAAGCGAGGC 61.050 66.667 0.00 0.00 0.00 4.70
1362 5162 1.786937 AAAATGCCACTTGGGACACA 58.213 45.000 0.00 0.00 39.29 3.72
1363 5163 2.482864 CAAAAATGCCACTTGGGACAC 58.517 47.619 0.00 0.00 39.29 3.67
1372 5173 6.128309 CAAAGTATTTAGGCCAAAAATGCCAC 60.128 38.462 20.60 13.42 44.29 5.01
1382 5183 4.730966 TGTTGGACAAAGTATTTAGGCCA 58.269 39.130 5.01 0.00 40.74 5.36
1386 5187 7.166167 ACTACCCTGTTGGACAAAGTATTTAG 58.834 38.462 0.00 0.00 35.17 1.85
1403 5204 4.710324 TGTTTTCAACCAGTACTACCCTG 58.290 43.478 0.00 0.00 0.00 4.45
1408 5209 7.556733 AACGATTTGTTTTCAACCAGTACTA 57.443 32.000 0.00 0.00 37.59 1.82
1409 5210 6.445357 AACGATTTGTTTTCAACCAGTACT 57.555 33.333 0.00 0.00 37.59 2.73
1425 5226 4.746535 ACCCCTCAAAACAAAACGATTT 57.253 36.364 0.00 0.00 0.00 2.17
1435 5236 5.462068 CGATTTCTTTCAAACCCCTCAAAAC 59.538 40.000 0.00 0.00 0.00 2.43
1446 5247 4.737765 CGAAAGTTGGCGATTTCTTTCAAA 59.262 37.500 13.62 0.00 43.06 2.69
1448 5249 3.562141 TCGAAAGTTGGCGATTTCTTTCA 59.438 39.130 13.62 2.71 43.06 2.69
1450 5251 3.606153 CGTCGAAAGTTGGCGATTTCTTT 60.606 43.478 4.66 0.00 38.91 2.52
1451 5252 2.096417 CGTCGAAAGTTGGCGATTTCTT 60.096 45.455 4.66 0.00 38.91 2.52
1454 5255 1.504359 TCGTCGAAAGTTGGCGATTT 58.496 45.000 0.00 0.00 38.91 2.17
1490 5291 4.970662 AATCGTCAATCAACCCAGAATG 57.029 40.909 0.00 0.00 0.00 2.67
1497 5298 4.251543 ACCCAAAAATCGTCAATCAACC 57.748 40.909 0.00 0.00 0.00 3.77
1500 5301 6.885952 TTCTTACCCAAAAATCGTCAATCA 57.114 33.333 0.00 0.00 0.00 2.57
1505 5306 5.800438 GCTCATTTCTTACCCAAAAATCGTC 59.200 40.000 0.00 0.00 0.00 4.20
1506 5307 5.242838 TGCTCATTTCTTACCCAAAAATCGT 59.757 36.000 0.00 0.00 0.00 3.73
1507 5308 5.708948 TGCTCATTTCTTACCCAAAAATCG 58.291 37.500 0.00 0.00 0.00 3.34
1509 5310 8.922931 AAAATGCTCATTTCTTACCCAAAAAT 57.077 26.923 8.14 0.00 39.88 1.82
1510 5311 8.744568 AAAAATGCTCATTTCTTACCCAAAAA 57.255 26.923 8.14 0.00 39.88 1.94
1511 5312 9.267084 GTAAAAATGCTCATTTCTTACCCAAAA 57.733 29.630 8.14 0.00 39.88 2.44
1512 5313 8.424918 TGTAAAAATGCTCATTTCTTACCCAAA 58.575 29.630 21.08 11.17 39.88 3.28
1513 5314 7.957002 TGTAAAAATGCTCATTTCTTACCCAA 58.043 30.769 21.08 11.35 39.88 4.12
1515 5316 9.435688 AATTGTAAAAATGCTCATTTCTTACCC 57.564 29.630 21.08 10.43 39.88 3.69
1529 5333 9.332301 GCATGGAAAATCACAATTGTAAAAATG 57.668 29.630 11.53 8.41 0.00 2.32
1542 5346 5.248870 AGAATTACGGCATGGAAAATCAC 57.751 39.130 0.00 0.00 0.00 3.06
1554 5358 7.766219 TTACTTGATAGTGAAGAATTACGGC 57.234 36.000 0.00 0.00 35.78 5.68
1568 5372 7.012421 GTGAGGGCCAGTTATTTTACTTGATAG 59.988 40.741 6.18 0.00 0.00 2.08
1569 5373 6.826741 GTGAGGGCCAGTTATTTTACTTGATA 59.173 38.462 6.18 0.00 0.00 2.15
1581 5385 1.159905 TCTGGGTGAGGGCCAGTTA 59.840 57.895 6.18 0.00 33.75 2.24
1754 5856 2.365768 GGGGTGGGGGAGAGAGAC 60.366 72.222 0.00 0.00 0.00 3.36
1771 5873 1.304282 CAGGGTGAGGTGGGAATGG 59.696 63.158 0.00 0.00 0.00 3.16
1852 5954 3.620374 CGGAGTTGGATTGAGATGTGAAG 59.380 47.826 0.00 0.00 0.00 3.02
1954 6057 3.372060 GCGCCTGTATGCTAATTTTTCC 58.628 45.455 0.00 0.00 0.00 3.13
1966 6069 0.179084 AGCAATGTACGCGCCTGTAT 60.179 50.000 5.73 0.00 0.00 2.29
1998 6101 1.575447 GGGCCAAGAACAGGGAGGAT 61.575 60.000 4.39 0.00 0.00 3.24
2000 6103 2.080336 TTGGGCCAAGAACAGGGAGG 62.080 60.000 16.66 0.00 0.00 4.30
2006 6109 0.850100 TCTTCCTTGGGCCAAGAACA 59.150 50.000 40.88 24.14 43.42 3.18
2041 6144 2.440539 ACAAGAGCCACGAAGTACAG 57.559 50.000 0.00 0.00 41.61 2.74
2059 6163 0.306533 TCGTTGCTTCGGCTGAAAAC 59.693 50.000 9.73 10.68 42.37 2.43
2096 6201 2.037620 CTGAATCCGAGAGCAGGGGG 62.038 65.000 0.00 0.00 0.00 5.40
2129 6234 3.942130 GCTAGAACAGGCAAAACCAAT 57.058 42.857 0.00 0.00 43.14 3.16
2147 6252 3.350833 CTCCAGAGCTAAAACAATGGCT 58.649 45.455 0.00 0.00 37.77 4.75
2262 6368 5.009610 ACAAAACATGTGCTACCTACCAAAG 59.990 40.000 0.00 0.00 41.93 2.77
2283 6389 2.163412 GCAGAATTGACCGGCATTACAA 59.837 45.455 0.00 0.91 0.00 2.41
2325 6431 4.345859 AATATAGATGACGCGGGGAAAA 57.654 40.909 12.47 0.00 0.00 2.29
2333 6441 5.140747 AGAGGGACAAATATAGATGACGC 57.859 43.478 0.00 0.00 0.00 5.19
2369 6478 4.568072 TCAAGAGCTAATTTACTGGGCA 57.432 40.909 0.00 0.00 0.00 5.36
2430 6539 5.163652 TGAGATTTCAAGAATCATGCAGCTG 60.164 40.000 10.11 10.11 0.00 4.24
2431 6540 4.948004 TGAGATTTCAAGAATCATGCAGCT 59.052 37.500 0.00 0.00 0.00 4.24
2467 6576 0.748005 ACTGCAAGGCGTTTCACAGT 60.748 50.000 11.46 11.46 39.30 3.55
2485 6594 5.091431 CCGATTTCTGCAATTTCTGAGAAC 58.909 41.667 0.00 0.00 0.00 3.01
2491 6600 5.241506 TGTTCTTCCGATTTCTGCAATTTCT 59.758 36.000 0.00 0.00 0.00 2.52
2515 6626 0.397941 TGCAGGAACAGTAGCTTGCT 59.602 50.000 10.51 0.00 33.00 3.91
2518 6629 2.420687 GGCTATGCAGGAACAGTAGCTT 60.421 50.000 11.78 0.00 38.22 3.74
2521 6632 2.484417 CCTGGCTATGCAGGAACAGTAG 60.484 54.545 0.69 0.00 40.95 2.57
2575 6687 9.379811 CAAAAACGCGGTAACTACTTAATTTAA 57.620 29.630 12.47 0.00 0.00 1.52
2587 6699 1.847390 CACCAACAAAAACGCGGTAAC 59.153 47.619 12.47 0.00 0.00 2.50
2603 6715 5.586877 ACCTGAATTACCTAGTCTACACCA 58.413 41.667 0.00 0.00 0.00 4.17
2664 6790 1.527311 GAGGTCACGCAAGAACAAGAC 59.473 52.381 0.00 0.00 43.62 3.01
2666 6792 1.528586 CTGAGGTCACGCAAGAACAAG 59.471 52.381 0.00 0.00 43.62 3.16
2676 6802 1.453155 CCAAAATCCCTGAGGTCACG 58.547 55.000 0.00 0.00 0.00 4.35
2950 7076 0.164647 CGTTCGCCTTGCTCTGAAAG 59.835 55.000 0.00 0.00 0.00 2.62
2953 7079 1.372997 GTCGTTCGCCTTGCTCTGA 60.373 57.895 0.00 0.00 0.00 3.27
3112 7238 2.216046 CTGCTCAGCTTGTTGAACTCA 58.784 47.619 0.00 0.00 0.00 3.41
3365 7491 1.448119 CTAGGCGCGTCATCAGAGGA 61.448 60.000 15.58 0.00 0.00 3.71
3733 7863 1.677637 GGGAACGGAGGGACTAGCTG 61.678 65.000 0.00 0.00 41.55 4.24
3737 7867 1.961133 ATTTGGGAACGGAGGGACTA 58.039 50.000 0.00 0.00 41.55 2.59
3741 7871 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
3742 7872 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
3743 7873 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
3744 7874 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
3745 7875 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
3746 7876 8.263940 TCTAGAAAGACAAATATTTGGGAACG 57.736 34.615 27.43 11.14 42.34 3.95
3770 7900 9.485591 CCGTATGTTGTAACTATTTGAAATGTC 57.514 33.333 0.00 0.00 0.00 3.06
3771 7901 9.221933 TCCGTATGTTGTAACTATTTGAAATGT 57.778 29.630 0.00 0.00 0.00 2.71
3818 7948 8.088981 ACGAAGTAAAATGAATGAGTCTACACT 58.911 33.333 0.00 0.00 41.94 3.55
3819 7949 8.240883 ACGAAGTAAAATGAATGAGTCTACAC 57.759 34.615 0.00 0.00 41.94 2.90
3865 7995 9.685828 CCGTTTCCAAATATTTGTCTTTTAGAA 57.314 29.630 23.24 15.39 36.45 2.10
3866 7996 9.069082 TCCGTTTCCAAATATTTGTCTTTTAGA 57.931 29.630 23.24 11.03 36.45 2.10
3867 7997 9.341899 CTCCGTTTCCAAATATTTGTCTTTTAG 57.658 33.333 23.24 9.12 36.45 1.85
3868 7998 8.301002 CCTCCGTTTCCAAATATTTGTCTTTTA 58.699 33.333 23.24 5.96 36.45 1.52
3869 7999 7.151976 CCTCCGTTTCCAAATATTTGTCTTTT 58.848 34.615 23.24 0.00 36.45 2.27
3870 8000 6.295067 CCCTCCGTTTCCAAATATTTGTCTTT 60.295 38.462 23.24 0.00 36.45 2.52
3871 8001 5.185056 CCCTCCGTTTCCAAATATTTGTCTT 59.815 40.000 23.24 0.00 36.45 3.01
3872 8002 4.705023 CCCTCCGTTTCCAAATATTTGTCT 59.295 41.667 23.24 0.00 36.45 3.41
3873 8003 4.703093 TCCCTCCGTTTCCAAATATTTGTC 59.297 41.667 23.24 11.68 36.45 3.18
3874 8004 4.668636 TCCCTCCGTTTCCAAATATTTGT 58.331 39.130 23.24 0.00 36.45 2.83
3875 8005 4.705023 ACTCCCTCCGTTTCCAAATATTTG 59.295 41.667 19.40 19.40 37.90 2.32
3876 8006 4.930696 ACTCCCTCCGTTTCCAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
3877 8007 4.586306 ACTCCCTCCGTTTCCAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
3878 8008 4.720273 ACTACTCCCTCCGTTTCCAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
3879 8009 4.098894 ACTACTCCCTCCGTTTCCAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3880 8010 2.910977 ACTACTCCCTCCGTTTCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
3881 8011 2.332117 ACTACTCCCTCCGTTTCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
3882 8012 2.019807 ACTACTCCCTCCGTTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
3883 8013 1.621814 CAACTACTCCCTCCGTTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
3884 8014 1.622312 ACAACTACTCCCTCCGTTTCC 59.378 52.381 0.00 0.00 0.00 3.13
3885 8015 2.298163 TGACAACTACTCCCTCCGTTTC 59.702 50.000 0.00 0.00 0.00 2.78
3886 8016 2.322658 TGACAACTACTCCCTCCGTTT 58.677 47.619 0.00 0.00 0.00 3.60
3887 8017 2.005370 TGACAACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
3888 8018 1.825474 CATGACAACTACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
3889 8019 1.471676 GCATGACAACTACTCCCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
3890 8020 1.555075 TGCATGACAACTACTCCCTCC 59.445 52.381 0.00 0.00 0.00 4.30
3891 8021 2.028112 TGTGCATGACAACTACTCCCTC 60.028 50.000 0.00 0.00 0.00 4.30
3892 8022 1.977854 TGTGCATGACAACTACTCCCT 59.022 47.619 0.00 0.00 0.00 4.20
3893 8023 2.472695 TGTGCATGACAACTACTCCC 57.527 50.000 0.00 0.00 0.00 4.30
3894 8024 5.376854 AAAATGTGCATGACAACTACTCC 57.623 39.130 0.00 0.00 38.36 3.85
3914 8044 5.492855 TCCTCCTATGTCCGAAAGAAAAA 57.507 39.130 0.00 0.00 0.00 1.94
3915 8045 5.693769 ATCCTCCTATGTCCGAAAGAAAA 57.306 39.130 0.00 0.00 0.00 2.29
3916 8046 5.693769 AATCCTCCTATGTCCGAAAGAAA 57.306 39.130 0.00 0.00 0.00 2.52
3917 8047 5.221461 GCTAATCCTCCTATGTCCGAAAGAA 60.221 44.000 0.00 0.00 0.00 2.52
3918 8048 4.281182 GCTAATCCTCCTATGTCCGAAAGA 59.719 45.833 0.00 0.00 0.00 2.52
3919 8049 4.282195 AGCTAATCCTCCTATGTCCGAAAG 59.718 45.833 0.00 0.00 0.00 2.62
3920 8050 4.039245 CAGCTAATCCTCCTATGTCCGAAA 59.961 45.833 0.00 0.00 0.00 3.46
3921 8051 3.574396 CAGCTAATCCTCCTATGTCCGAA 59.426 47.826 0.00 0.00 0.00 4.30
3922 8052 3.157881 CAGCTAATCCTCCTATGTCCGA 58.842 50.000 0.00 0.00 0.00 4.55
3923 8053 2.232452 CCAGCTAATCCTCCTATGTCCG 59.768 54.545 0.00 0.00 0.00 4.79
3924 8054 3.511477 TCCAGCTAATCCTCCTATGTCC 58.489 50.000 0.00 0.00 0.00 4.02
3925 8055 4.591072 ACTTCCAGCTAATCCTCCTATGTC 59.409 45.833 0.00 0.00 0.00 3.06
3926 8056 4.561752 ACTTCCAGCTAATCCTCCTATGT 58.438 43.478 0.00 0.00 0.00 2.29
3927 8057 5.559148 AACTTCCAGCTAATCCTCCTATG 57.441 43.478 0.00 0.00 0.00 2.23
3928 8058 6.360618 CAAAACTTCCAGCTAATCCTCCTAT 58.639 40.000 0.00 0.00 0.00 2.57
3929 8059 5.745227 CAAAACTTCCAGCTAATCCTCCTA 58.255 41.667 0.00 0.00 0.00 2.94
3930 8060 4.593956 CAAAACTTCCAGCTAATCCTCCT 58.406 43.478 0.00 0.00 0.00 3.69
3931 8061 3.129462 GCAAAACTTCCAGCTAATCCTCC 59.871 47.826 0.00 0.00 0.00 4.30
3932 8062 4.013050 AGCAAAACTTCCAGCTAATCCTC 58.987 43.478 0.00 0.00 35.19 3.71
3933 8063 4.039603 AGCAAAACTTCCAGCTAATCCT 57.960 40.909 0.00 0.00 35.19 3.24
3934 8064 5.897377 TTAGCAAAACTTCCAGCTAATCC 57.103 39.130 0.00 0.00 42.66 3.01
3935 8065 7.539022 GTCTTTTAGCAAAACTTCCAGCTAATC 59.461 37.037 6.56 0.00 45.64 1.75
3936 8066 7.014230 TGTCTTTTAGCAAAACTTCCAGCTAAT 59.986 33.333 6.56 0.00 45.64 1.73
3937 8067 6.320164 TGTCTTTTAGCAAAACTTCCAGCTAA 59.680 34.615 0.00 0.00 44.95 3.09
3938 8068 5.825679 TGTCTTTTAGCAAAACTTCCAGCTA 59.174 36.000 0.00 0.00 38.47 3.32
3939 8069 4.644685 TGTCTTTTAGCAAAACTTCCAGCT 59.355 37.500 0.00 0.00 40.92 4.24
3940 8070 4.932146 TGTCTTTTAGCAAAACTTCCAGC 58.068 39.130 0.00 0.00 0.00 4.85
3941 8071 9.185192 CTAAATGTCTTTTAGCAAAACTTCCAG 57.815 33.333 5.55 0.00 40.16 3.86
3942 8072 8.908903 TCTAAATGTCTTTTAGCAAAACTTCCA 58.091 29.630 11.59 0.00 44.34 3.53
3943 8073 9.914131 ATCTAAATGTCTTTTAGCAAAACTTCC 57.086 29.630 11.59 0.00 44.34 3.46
3946 8076 9.683069 CACATCTAAATGTCTTTTAGCAAAACT 57.317 29.630 11.59 0.00 44.41 2.66
3947 8077 8.427774 GCACATCTAAATGTCTTTTAGCAAAAC 58.572 33.333 11.59 1.37 44.41 2.43
3948 8078 7.598493 GGCACATCTAAATGTCTTTTAGCAAAA 59.402 33.333 11.59 0.00 44.41 2.44
3949 8079 7.090173 GGCACATCTAAATGTCTTTTAGCAAA 58.910 34.615 11.59 0.00 44.41 3.68
3950 8080 6.208402 TGGCACATCTAAATGTCTTTTAGCAA 59.792 34.615 11.59 0.00 44.41 3.91
3951 8081 5.709631 TGGCACATCTAAATGTCTTTTAGCA 59.290 36.000 11.59 3.09 44.41 3.49
3952 8082 6.194796 TGGCACATCTAAATGTCTTTTAGC 57.805 37.500 11.59 3.34 44.41 3.09
3970 8100 3.731867 CGTTGGAATTGCTCTTATGGCAC 60.732 47.826 0.00 0.00 39.55 5.01
3971 8101 2.423185 CGTTGGAATTGCTCTTATGGCA 59.577 45.455 0.00 0.00 37.97 4.92
3972 8102 2.796032 GCGTTGGAATTGCTCTTATGGC 60.796 50.000 0.00 0.00 0.00 4.40
3973 8103 2.539547 CGCGTTGGAATTGCTCTTATGG 60.540 50.000 0.00 0.00 0.00 2.74
3974 8104 2.351418 TCGCGTTGGAATTGCTCTTATG 59.649 45.455 5.77 0.00 0.00 1.90
3975 8105 2.351726 GTCGCGTTGGAATTGCTCTTAT 59.648 45.455 5.77 0.00 0.00 1.73
3976 8106 1.730064 GTCGCGTTGGAATTGCTCTTA 59.270 47.619 5.77 0.00 0.00 2.10
3977 8107 0.517316 GTCGCGTTGGAATTGCTCTT 59.483 50.000 5.77 0.00 0.00 2.85
3978 8108 1.626654 CGTCGCGTTGGAATTGCTCT 61.627 55.000 5.77 0.00 0.00 4.09
3979 8109 1.225745 CGTCGCGTTGGAATTGCTC 60.226 57.895 5.77 0.00 0.00 4.26
3980 8110 1.019278 ATCGTCGCGTTGGAATTGCT 61.019 50.000 5.77 0.00 0.00 3.91
3981 8111 0.179200 AATCGTCGCGTTGGAATTGC 60.179 50.000 5.77 0.00 0.00 3.56
3982 8112 1.127766 TGAATCGTCGCGTTGGAATTG 59.872 47.619 5.77 0.00 0.00 2.32
3983 8113 1.434555 TGAATCGTCGCGTTGGAATT 58.565 45.000 5.77 0.21 0.00 2.17
3984 8114 1.434555 TTGAATCGTCGCGTTGGAAT 58.565 45.000 5.77 0.00 0.00 3.01
3985 8115 1.218763 TTTGAATCGTCGCGTTGGAA 58.781 45.000 5.77 0.00 0.00 3.53
3986 8116 1.127766 CATTTGAATCGTCGCGTTGGA 59.872 47.619 5.77 2.09 0.00 3.53
3987 8117 1.523501 CATTTGAATCGTCGCGTTGG 58.476 50.000 5.77 0.00 0.00 3.77
3988 8118 1.523501 CCATTTGAATCGTCGCGTTG 58.476 50.000 5.77 0.00 0.00 4.10
3989 8119 0.446222 CCCATTTGAATCGTCGCGTT 59.554 50.000 5.77 0.00 0.00 4.84
3990 8120 0.672401 ACCCATTTGAATCGTCGCGT 60.672 50.000 5.77 0.00 0.00 6.01
3991 8121 0.026285 GACCCATTTGAATCGTCGCG 59.974 55.000 0.00 0.00 0.00 5.87
3992 8122 1.062587 CTGACCCATTTGAATCGTCGC 59.937 52.381 0.00 0.00 0.00 5.19
3993 8123 1.062587 GCTGACCCATTTGAATCGTCG 59.937 52.381 0.00 0.00 0.00 5.12
3994 8124 2.359900 AGCTGACCCATTTGAATCGTC 58.640 47.619 0.00 0.00 0.00 4.20
3995 8125 2.489329 CAAGCTGACCCATTTGAATCGT 59.511 45.455 0.00 0.00 0.00 3.73
3996 8126 2.749076 TCAAGCTGACCCATTTGAATCG 59.251 45.455 0.00 0.00 0.00 3.34
3997 8127 4.102035 GTCAAGCTGACCCATTTGAATC 57.898 45.455 0.00 0.00 41.37 2.52
4011 8141 0.468226 TTCTGTTGGACGGTCAAGCT 59.532 50.000 10.76 0.00 0.00 3.74
4027 8157 3.753272 CGACACATTTGGATCAACCTTCT 59.247 43.478 0.00 0.00 39.86 2.85
4033 8164 2.478514 CACGTCGACACATTTGGATCAA 59.521 45.455 17.16 0.00 0.00 2.57
4092 8223 3.490249 CGGCGATTGACTGGACACTTATA 60.490 47.826 0.00 0.00 0.00 0.98
4100 8234 4.467084 GGCCGGCGATTGACTGGA 62.467 66.667 22.54 0.00 35.38 3.86
4109 8243 0.535553 AAGTAAACTTTGGCCGGCGA 60.536 50.000 22.54 15.52 30.82 5.54
4258 8399 0.112995 TTCAGATGGGCTGGCTTTGT 59.887 50.000 0.00 0.00 44.98 2.83
4261 8402 1.377725 CGTTCAGATGGGCTGGCTT 60.378 57.895 0.00 0.00 44.98 4.35
4262 8403 2.270205 CGTTCAGATGGGCTGGCT 59.730 61.111 0.00 0.00 44.98 4.75
4274 8415 2.125310 CATACCAGGCGGCGTTCA 60.125 61.111 9.37 0.00 34.57 3.18
4367 8517 4.856607 CGAAGGCGCTCCGACTCC 62.857 72.222 7.64 0.00 44.38 3.85
4386 8539 3.264897 GCGATGCTCCAACGCGAT 61.265 61.111 15.93 0.00 44.47 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.