Multiple sequence alignment - TraesCS7A01G243000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G243000 chr7A 100.000 6008 0 0 1 6008 218260722 218254715 0.000000e+00 11095.0
1 TraesCS7A01G243000 chr7A 100.000 262 0 0 375 636 391910088 391910349 9.050000e-133 484.0
2 TraesCS7A01G243000 chr1B 98.887 1617 17 1 2229 3845 363163488 363165103 0.000000e+00 2885.0
3 TraesCS7A01G243000 chr1B 86.981 530 25 15 3309 3837 517503718 517504204 1.890000e-154 556.0
4 TraesCS7A01G243000 chr1B 93.304 224 12 2 3614 3837 22056036 22056256 1.610000e-85 327.0
5 TraesCS7A01G243000 chr1B 85.448 268 36 3 5737 6001 273474743 273475010 5.930000e-70 276.0
6 TraesCS7A01G243000 chr2B 97.838 1619 16 9 2228 3845 183513643 183515243 0.000000e+00 2778.0
7 TraesCS7A01G243000 chr7D 97.576 1444 29 3 3847 5289 205943653 205942215 0.000000e+00 2468.0
8 TraesCS7A01G243000 chr7D 93.457 1513 73 7 633 2145 205945197 205943711 0.000000e+00 2222.0
9 TraesCS7A01G243000 chr7D 92.132 394 12 2 1 377 205945585 205945194 6.850000e-149 538.0
10 TraesCS7A01G243000 chr7D 94.505 182 10 0 5473 5654 205942195 205942014 1.270000e-71 281.0
11 TraesCS7A01G243000 chr7D 88.312 231 23 3 5782 6008 205941723 205941493 2.130000e-69 274.0
12 TraesCS7A01G243000 chr7D 83.824 272 38 6 5741 6008 269917751 269918020 2.780000e-63 254.0
13 TraesCS7A01G243000 chr7B 94.861 1440 61 5 3850 5289 196309851 196311277 0.000000e+00 2237.0
14 TraesCS7A01G243000 chr7B 88.941 859 50 23 634 1477 196282107 196282935 0.000000e+00 1018.0
15 TraesCS7A01G243000 chr7B 91.004 767 45 6 1478 2228 196309097 196309855 0.000000e+00 1013.0
16 TraesCS7A01G243000 chr7B 84.099 566 56 15 5474 6008 196311298 196311860 3.210000e-142 516.0
17 TraesCS7A01G243000 chr7B 91.900 321 16 5 63 377 196281793 196282109 1.990000e-119 440.0
18 TraesCS7A01G243000 chr7B 91.882 271 18 4 3309 3578 12795901 12795634 5.680000e-100 375.0
19 TraesCS7A01G243000 chr7B 83.333 276 42 3 5737 6008 446202976 446203251 1.000000e-62 252.0
20 TraesCS7A01G243000 chr2A 98.751 1041 12 1 2229 3268 461023886 461024926 0.000000e+00 1849.0
21 TraesCS7A01G243000 chr2A 98.987 691 7 0 3143 3833 461025044 461025734 0.000000e+00 1238.0
22 TraesCS7A01G243000 chr2A 98.855 262 3 0 375 636 5530133 5529872 9.120000e-128 468.0
23 TraesCS7A01G243000 chr2A 95.506 267 12 0 370 636 419518842 419519108 1.550000e-115 427.0
24 TraesCS7A01G243000 chr2A 95.402 261 11 1 376 636 7514665 7514406 1.200000e-111 414.0
25 TraesCS7A01G243000 chr5B 96.004 1076 33 7 2228 3301 613633351 613634418 0.000000e+00 1740.0
26 TraesCS7A01G243000 chr5B 96.700 1000 30 2 2230 3227 70390037 70391035 0.000000e+00 1661.0
27 TraesCS7A01G243000 chr5B 88.235 68 6 2 4638 4704 508681051 508680985 4.990000e-11 80.5
28 TraesCS7A01G243000 chr5B 75.000 204 28 20 5320 5511 660591187 660591379 8.350000e-09 73.1
29 TraesCS7A01G243000 chr3B 95.773 1041 40 1 2232 3268 553100799 553099759 0.000000e+00 1676.0
30 TraesCS7A01G243000 chr3B 87.607 468 27 20 3382 3847 553099607 553099169 1.150000e-141 514.0
31 TraesCS7A01G243000 chr1A 95.678 995 43 0 2274 3268 51344478 51343484 0.000000e+00 1600.0
32 TraesCS7A01G243000 chr1A 94.074 270 14 2 368 636 552282473 552282741 5.610000e-110 409.0
33 TraesCS7A01G243000 chr1A 94.196 224 13 0 3614 3837 51343077 51342854 5.770000e-90 342.0
34 TraesCS7A01G243000 chr1A 90.367 218 19 2 3309 3526 137855358 137855143 9.860000e-73 285.0
35 TraesCS7A01G243000 chr1A 100.000 154 0 0 5320 5473 368368496 368368649 9.860000e-73 285.0
36 TraesCS7A01G243000 chr6D 96.087 971 37 1 2228 3198 16282232 16283201 0.000000e+00 1581.0
37 TraesCS7A01G243000 chr6D 93.488 215 13 1 3312 3526 16283557 16283770 9.720000e-83 318.0
38 TraesCS7A01G243000 chr6D 83.333 270 34 9 5737 6001 357177412 357177675 7.780000e-59 239.0
39 TraesCS7A01G243000 chr4A 96.087 971 36 2 2229 3198 472949515 472948546 0.000000e+00 1581.0
40 TraesCS7A01G243000 chr4A 93.796 274 15 2 363 636 170275607 170275878 1.560000e-110 411.0
41 TraesCS7A01G243000 chr4A 94.403 268 14 1 376 642 234138585 234138318 1.560000e-110 411.0
42 TraesCS7A01G243000 chr5A 92.834 307 20 2 3309 3614 645606801 645607106 1.540000e-120 444.0
43 TraesCS7A01G243000 chr5A 94.796 269 13 1 373 640 104620924 104621192 9.310000e-113 418.0
44 TraesCS7A01G243000 chr5A 90.625 224 18 3 3614 3837 439443707 439443927 1.640000e-75 294.0
45 TraesCS7A01G243000 chr5A 98.171 164 2 1 5320 5482 168438000 168438163 9.860000e-73 285.0
46 TraesCS7A01G243000 chrUn 76.345 799 181 8 4006 4800 214044042 214044836 7.200000e-114 422.0
47 TraesCS7A01G243000 chrUn 76.538 780 177 6 4030 4806 240301019 240300243 7.200000e-114 422.0
48 TraesCS7A01G243000 chr3A 95.402 261 12 0 376 636 474832821 474832561 3.350000e-112 416.0
49 TraesCS7A01G243000 chr3A 99.351 154 1 0 5320 5473 1759705 1759858 4.590000e-71 279.0
50 TraesCS7A01G243000 chr3A 97.024 168 2 2 5309 5473 217823195 217823362 4.590000e-71 279.0
51 TraesCS7A01G243000 chr3A 93.855 179 6 5 5293 5470 600929756 600929930 1.280000e-66 265.0
52 TraesCS7A01G243000 chr6B 94.118 221 13 0 3088 3308 30144139 30144359 2.680000e-88 337.0
53 TraesCS7A01G243000 chr6B 98.160 163 2 1 5320 5481 52154144 52153982 3.540000e-72 283.0
54 TraesCS7A01G243000 chr6B 84.000 275 40 4 5737 6008 538939093 538939366 1.660000e-65 261.0
55 TraesCS7A01G243000 chr6B 83.395 271 41 4 5741 6008 255457348 255457617 1.290000e-61 248.0
56 TraesCS7A01G243000 chr2D 94.470 217 11 1 3310 3526 365966273 365966058 3.470000e-87 333.0
57 TraesCS7A01G243000 chr3D 92.857 224 13 2 3614 3837 552884917 552885137 7.510000e-84 322.0
58 TraesCS7A01G243000 chr3D 93.119 218 13 2 3309 3526 606563321 606563106 9.720000e-83 318.0
59 TraesCS7A01G243000 chr3D 91.398 93 7 1 3527 3618 552884733 552884825 6.320000e-25 126.0
60 TraesCS7A01G243000 chr6A 100.000 154 0 0 5320 5473 349516635 349516482 9.860000e-73 285.0
61 TraesCS7A01G243000 chr6A 94.413 179 7 2 5297 5473 430340378 430340555 7.670000e-69 272.0
62 TraesCS7A01G243000 chr4B 100.000 154 0 0 5320 5473 658178166 658178319 9.860000e-73 285.0
63 TraesCS7A01G243000 chr4B 83.824 272 39 4 5741 6008 447109058 447109328 2.780000e-63 254.0
64 TraesCS7A01G243000 chr4B 85.833 240 29 5 5770 6007 471057437 471057201 3.600000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G243000 chr7A 218254715 218260722 6007 True 11095.000000 11095 100.0000 1 6008 1 chr7A.!!$R1 6007
1 TraesCS7A01G243000 chr1B 363163488 363165103 1615 False 2885.000000 2885 98.8870 2229 3845 1 chr1B.!!$F3 1616
2 TraesCS7A01G243000 chr2B 183513643 183515243 1600 False 2778.000000 2778 97.8380 2228 3845 1 chr2B.!!$F1 1617
3 TraesCS7A01G243000 chr7D 205941493 205945585 4092 True 1156.600000 2468 93.1964 1 6008 5 chr7D.!!$R1 6007
4 TraesCS7A01G243000 chr7B 196309097 196311860 2763 False 1255.333333 2237 89.9880 1478 6008 3 chr7B.!!$F3 4530
5 TraesCS7A01G243000 chr7B 196281793 196282935 1142 False 729.000000 1018 90.4205 63 1477 2 chr7B.!!$F2 1414
6 TraesCS7A01G243000 chr2A 461023886 461025734 1848 False 1543.500000 1849 98.8690 2229 3833 2 chr2A.!!$F2 1604
7 TraesCS7A01G243000 chr5B 613633351 613634418 1067 False 1740.000000 1740 96.0040 2228 3301 1 chr5B.!!$F2 1073
8 TraesCS7A01G243000 chr5B 70390037 70391035 998 False 1661.000000 1661 96.7000 2230 3227 1 chr5B.!!$F1 997
9 TraesCS7A01G243000 chr3B 553099169 553100799 1630 True 1095.000000 1676 91.6900 2232 3847 2 chr3B.!!$R1 1615
10 TraesCS7A01G243000 chr1A 51342854 51344478 1624 True 971.000000 1600 94.9370 2274 3837 2 chr1A.!!$R2 1563
11 TraesCS7A01G243000 chr6D 16282232 16283770 1538 False 949.500000 1581 94.7875 2228 3526 2 chr6D.!!$F2 1298
12 TraesCS7A01G243000 chr4A 472948546 472949515 969 True 1581.000000 1581 96.0870 2229 3198 1 chr4A.!!$R2 969
13 TraesCS7A01G243000 chrUn 214044042 214044836 794 False 422.000000 422 76.3450 4006 4800 1 chrUn.!!$F1 794
14 TraesCS7A01G243000 chrUn 240300243 240301019 776 True 422.000000 422 76.5380 4030 4806 1 chrUn.!!$R1 776

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.253044 TGCTTGATGCTAGGTGGGAC 59.747 55.000 0.00 0.0 43.37 4.46 F
32 33 0.321653 AGGTGGGACGAACAGAATGC 60.322 55.000 0.00 0.0 42.53 3.56 F
392 416 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.0 0.00 3.11 F
402 426 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.0 0.00 5.10 F
1363 1402 1.071299 ACCTGCAATGAGACGCACA 59.929 52.632 0.00 0.0 33.75 4.57 F
2224 2282 0.453793 CACCGGCACTTTTTCACACA 59.546 50.000 0.00 0.0 0.00 3.72 F
2431 2495 0.760567 TGAGAGCATATGGACGCCCT 60.761 55.000 4.56 0.0 0.00 5.19 F
3775 4348 1.304381 GAAGGGAATGGGCAGCACA 60.304 57.895 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1869 0.252696 ACCACTCCTGCTCCACCATA 60.253 55.000 0.00 0.00 0.00 2.74 R
2020 2059 1.388547 TTTGTGGAGTTGAGGCACAC 58.611 50.000 0.00 0.00 0.00 3.82 R
2073 2112 1.288508 ATGGATTGCCCTGGTAGCCA 61.289 55.000 1.05 1.05 35.38 4.75 R
2200 2257 2.356695 GTGAAAAAGTGCCGGTGTTACT 59.643 45.455 1.90 0.00 0.00 2.24 R
2551 2615 2.973600 GGGTTGGTACGCACGCAA 60.974 61.111 5.53 0.00 37.19 4.85 R
3775 4348 1.071471 CCAACAACAGGGAGCGACT 59.929 57.895 0.00 0.00 0.00 4.18 R
4128 4702 8.623903 AGAATGCGAGCTTCATCAAATTTATTA 58.376 29.630 3.34 0.00 0.00 0.98 R
5760 6463 0.032952 TACCATTATGCTCGGACCGC 59.967 55.000 9.66 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.253044 TGCTTGATGCTAGGTGGGAC 59.747 55.000 0.00 0.00 43.37 4.46
32 33 0.321653 AGGTGGGACGAACAGAATGC 60.322 55.000 0.00 0.00 42.53 3.56
40 41 3.444916 GACGAACAGAATGCTATTCCGA 58.555 45.455 0.00 0.00 42.53 4.55
237 257 6.594744 ACTAGCATGTCATGATCCATAAACA 58.405 36.000 17.24 0.00 0.00 2.83
238 258 7.056006 ACTAGCATGTCATGATCCATAAACAA 58.944 34.615 17.24 0.00 0.00 2.83
367 391 6.200286 TCTGTTTCGTCAATCTGTACAAGTTC 59.800 38.462 0.00 0.00 0.00 3.01
381 405 9.790344 TCTGTACAAGTTCTATATAGTACTCCC 57.210 37.037 18.94 9.99 33.58 4.30
382 406 9.796180 CTGTACAAGTTCTATATAGTACTCCCT 57.204 37.037 18.94 9.41 33.58 4.20
383 407 9.790344 TGTACAAGTTCTATATAGTACTCCCTC 57.210 37.037 18.94 12.17 33.58 4.30
384 408 9.230122 GTACAAGTTCTATATAGTACTCCCTCC 57.770 40.741 18.94 6.50 33.58 4.30
385 409 6.941436 ACAAGTTCTATATAGTACTCCCTCCG 59.059 42.308 18.94 8.86 33.58 4.63
386 410 6.064735 AGTTCTATATAGTACTCCCTCCGG 57.935 45.833 14.42 0.00 29.42 5.14
387 411 5.551189 AGTTCTATATAGTACTCCCTCCGGT 59.449 44.000 14.42 0.00 29.42 5.28
388 412 5.690464 TCTATATAGTACTCCCTCCGGTC 57.310 47.826 9.58 0.00 0.00 4.79
389 413 3.735720 ATATAGTACTCCCTCCGGTCC 57.264 52.381 0.00 0.00 0.00 4.46
390 414 1.532038 ATAGTACTCCCTCCGGTCCT 58.468 55.000 0.00 0.00 0.00 3.85
391 415 1.302907 TAGTACTCCCTCCGGTCCTT 58.697 55.000 0.00 0.00 0.00 3.36
392 416 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
393 417 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
394 418 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
395 419 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
396 420 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
397 421 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
398 422 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
399 423 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
400 424 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
401 425 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
402 426 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
403 427 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
404 428 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
405 429 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
406 430 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
407 431 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
408 432 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
409 433 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
410 434 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
411 435 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
418 442 9.594478 TTTAGTTCGCATATAAGATTTGACTGA 57.406 29.630 0.00 0.00 0.00 3.41
419 443 9.594478 TTAGTTCGCATATAAGATTTGACTGAA 57.406 29.630 0.00 0.00 0.00 3.02
420 444 8.136057 AGTTCGCATATAAGATTTGACTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
421 445 7.766278 AGTTCGCATATAAGATTTGACTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
422 446 7.700322 TCGCATATAAGATTTGACTGAAGTC 57.300 36.000 3.41 3.41 44.97 3.01
431 455 3.896317 GACTGAAGTCAAGCCTCGT 57.104 52.632 5.58 0.00 44.18 4.18
433 457 3.299340 GACTGAAGTCAAGCCTCGTAA 57.701 47.619 5.58 0.00 44.18 3.18
434 458 3.650139 GACTGAAGTCAAGCCTCGTAAA 58.350 45.455 5.58 0.00 44.18 2.01
435 459 3.654414 ACTGAAGTCAAGCCTCGTAAAG 58.346 45.455 0.00 0.00 0.00 1.85
436 460 3.069729 ACTGAAGTCAAGCCTCGTAAAGT 59.930 43.478 0.00 0.00 0.00 2.66
437 461 4.058817 CTGAAGTCAAGCCTCGTAAAGTT 58.941 43.478 0.00 0.00 0.00 2.66
438 462 4.448210 TGAAGTCAAGCCTCGTAAAGTTT 58.552 39.130 0.00 0.00 0.00 2.66
439 463 4.272504 TGAAGTCAAGCCTCGTAAAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
440 464 4.067972 AGTCAAGCCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
441 465 3.808174 AGTCAAGCCTCGTAAAGTTTGAC 59.192 43.478 10.54 10.54 42.37 3.18
442 466 3.059120 GTCAAGCCTCGTAAAGTTTGACC 60.059 47.826 8.09 0.00 39.44 4.02
443 467 2.875933 CAAGCCTCGTAAAGTTTGACCA 59.124 45.455 0.00 0.00 0.00 4.02
444 468 3.202829 AGCCTCGTAAAGTTTGACCAA 57.797 42.857 0.00 0.00 0.00 3.67
445 469 2.876550 AGCCTCGTAAAGTTTGACCAAC 59.123 45.455 0.00 0.00 35.32 3.77
470 494 9.353999 ACTTTACAGAAAAAGTTGTCAACATTC 57.646 29.630 17.78 16.44 45.20 2.67
471 495 9.352784 CTTTACAGAAAAAGTTGTCAACATTCA 57.647 29.630 17.78 2.12 32.81 2.57
472 496 8.682128 TTACAGAAAAAGTTGTCAACATTCAC 57.318 30.769 17.78 9.43 0.00 3.18
473 497 6.686630 ACAGAAAAAGTTGTCAACATTCACA 58.313 32.000 17.78 0.00 0.00 3.58
474 498 7.151308 ACAGAAAAAGTTGTCAACATTCACAA 58.849 30.769 17.78 0.00 0.00 3.33
479 503 4.630894 GTTGTCAACATTCACAACCTGA 57.369 40.909 10.93 0.00 44.45 3.86
480 504 4.992688 GTTGTCAACATTCACAACCTGAA 58.007 39.130 10.93 0.00 44.45 3.02
481 505 5.406649 GTTGTCAACATTCACAACCTGAAA 58.593 37.500 10.93 0.00 44.45 2.69
482 506 5.850557 TGTCAACATTCACAACCTGAAAT 57.149 34.783 0.00 0.00 42.37 2.17
483 507 5.830912 TGTCAACATTCACAACCTGAAATC 58.169 37.500 0.00 0.00 42.37 2.17
484 508 5.359292 TGTCAACATTCACAACCTGAAATCA 59.641 36.000 0.00 0.00 42.37 2.57
485 509 6.127507 TGTCAACATTCACAACCTGAAATCAA 60.128 34.615 0.00 0.00 42.37 2.57
486 510 6.925165 GTCAACATTCACAACCTGAAATCAAT 59.075 34.615 0.00 0.00 42.37 2.57
487 511 8.081633 GTCAACATTCACAACCTGAAATCAATA 58.918 33.333 0.00 0.00 42.37 1.90
488 512 8.081633 TCAACATTCACAACCTGAAATCAATAC 58.918 33.333 0.00 0.00 42.37 1.89
489 513 6.924111 ACATTCACAACCTGAAATCAATACC 58.076 36.000 0.00 0.00 42.37 2.73
490 514 6.493115 ACATTCACAACCTGAAATCAATACCA 59.507 34.615 0.00 0.00 42.37 3.25
491 515 5.957842 TCACAACCTGAAATCAATACCAC 57.042 39.130 0.00 0.00 0.00 4.16
492 516 5.630121 TCACAACCTGAAATCAATACCACT 58.370 37.500 0.00 0.00 0.00 4.00
493 517 6.774673 TCACAACCTGAAATCAATACCACTA 58.225 36.000 0.00 0.00 0.00 2.74
494 518 6.878923 TCACAACCTGAAATCAATACCACTAG 59.121 38.462 0.00 0.00 0.00 2.57
495 519 6.878923 CACAACCTGAAATCAATACCACTAGA 59.121 38.462 0.00 0.00 0.00 2.43
496 520 7.554118 CACAACCTGAAATCAATACCACTAGAT 59.446 37.037 0.00 0.00 0.00 1.98
497 521 8.768397 ACAACCTGAAATCAATACCACTAGATA 58.232 33.333 0.00 0.00 0.00 1.98
498 522 9.784531 CAACCTGAAATCAATACCACTAGATAT 57.215 33.333 0.00 0.00 0.00 1.63
499 523 9.784531 AACCTGAAATCAATACCACTAGATATG 57.215 33.333 0.00 0.00 0.00 1.78
500 524 8.938883 ACCTGAAATCAATACCACTAGATATGT 58.061 33.333 0.00 0.00 0.00 2.29
501 525 9.429359 CCTGAAATCAATACCACTAGATATGTC 57.571 37.037 0.00 0.00 0.00 3.06
502 526 9.987272 CTGAAATCAATACCACTAGATATGTCA 57.013 33.333 0.00 0.00 0.00 3.58
506 530 9.935241 AATCAATACCACTAGATATGTCATGAC 57.065 33.333 19.27 19.27 0.00 3.06
507 531 8.712228 TCAATACCACTAGATATGTCATGACT 57.288 34.615 25.55 13.92 0.00 3.41
508 532 9.147732 TCAATACCACTAGATATGTCATGACTT 57.852 33.333 25.55 21.29 0.00 3.01
513 537 8.982723 ACCACTAGATATGTCATGACTTAAAGT 58.017 33.333 25.55 21.34 0.00 2.66
514 538 9.823647 CCACTAGATATGTCATGACTTAAAGTT 57.176 33.333 25.55 9.43 0.00 2.66
552 576 9.889128 AACTTTAGCATGGCAAATGTTAATATT 57.111 25.926 8.17 0.00 0.00 1.28
553 577 9.889128 ACTTTAGCATGGCAAATGTTAATATTT 57.111 25.926 4.49 4.49 0.00 1.40
582 606 9.438228 TCATATAAATACGGTCAAACTTTGTGA 57.562 29.630 1.44 0.00 0.00 3.58
609 633 9.956720 AGTTTGACTTCAAAGAATTCTAATGTG 57.043 29.630 8.75 10.58 45.36 3.21
610 634 8.694394 GTTTGACTTCAAAGAATTCTAATGTGC 58.306 33.333 8.75 4.15 45.36 4.57
611 635 7.509141 TGACTTCAAAGAATTCTAATGTGCA 57.491 32.000 8.75 6.27 0.00 4.57
612 636 7.587629 TGACTTCAAAGAATTCTAATGTGCAG 58.412 34.615 8.75 7.30 0.00 4.41
613 637 7.445096 TGACTTCAAAGAATTCTAATGTGCAGA 59.555 33.333 8.75 0.00 0.00 4.26
614 638 7.814642 ACTTCAAAGAATTCTAATGTGCAGAG 58.185 34.615 8.75 8.33 0.00 3.35
615 639 7.446625 ACTTCAAAGAATTCTAATGTGCAGAGT 59.553 33.333 8.75 8.82 0.00 3.24
616 640 8.846943 TTCAAAGAATTCTAATGTGCAGAGTA 57.153 30.769 8.75 0.00 0.00 2.59
617 641 8.846943 TCAAAGAATTCTAATGTGCAGAGTAA 57.153 30.769 8.75 0.00 0.00 2.24
618 642 9.283768 TCAAAGAATTCTAATGTGCAGAGTAAA 57.716 29.630 8.75 0.00 0.00 2.01
619 643 9.897744 CAAAGAATTCTAATGTGCAGAGTAAAA 57.102 29.630 8.75 0.00 0.00 1.52
622 646 8.734386 AGAATTCTAATGTGCAGAGTAAAAAGG 58.266 33.333 6.06 0.00 0.00 3.11
623 647 8.635765 AATTCTAATGTGCAGAGTAAAAAGGA 57.364 30.769 0.00 0.00 0.00 3.36
624 648 7.435068 TTCTAATGTGCAGAGTAAAAAGGAC 57.565 36.000 0.00 0.00 0.00 3.85
625 649 5.938125 TCTAATGTGCAGAGTAAAAAGGACC 59.062 40.000 0.00 0.00 0.00 4.46
626 650 2.489971 TGTGCAGAGTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
627 651 1.804748 GTGCAGAGTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
628 652 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
629 653 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
720 756 7.437713 AATGGACTGGTTCTGTATTCTGATA 57.562 36.000 0.00 0.00 0.00 2.15
777 813 2.875933 TCGTCCAAGCAAAAGTAACCAG 59.124 45.455 0.00 0.00 0.00 4.00
788 824 3.314541 AAGTAACCAGATCACACGTCC 57.685 47.619 0.00 0.00 0.00 4.79
822 858 6.827727 GGAACATCCCTTAGAGCAGTAATTA 58.172 40.000 0.00 0.00 0.00 1.40
926 965 3.691609 GGGAGGTCAAGTAATCTGCAAAG 59.308 47.826 0.00 0.00 0.00 2.77
935 974 7.817962 GTCAAGTAATCTGCAAAGGTAGACTAA 59.182 37.037 0.00 0.00 38.63 2.24
936 975 8.540388 TCAAGTAATCTGCAAAGGTAGACTAAT 58.460 33.333 0.00 0.00 38.63 1.73
937 976 9.167311 CAAGTAATCTGCAAAGGTAGACTAATT 57.833 33.333 0.00 0.00 38.63 1.40
938 977 8.950208 AGTAATCTGCAAAGGTAGACTAATTC 57.050 34.615 0.00 0.00 38.63 2.17
939 978 8.763601 AGTAATCTGCAAAGGTAGACTAATTCT 58.236 33.333 0.00 0.00 38.63 2.40
940 979 9.384764 GTAATCTGCAAAGGTAGACTAATTCTT 57.615 33.333 0.00 0.00 38.63 2.52
941 980 8.499403 AATCTGCAAAGGTAGACTAATTCTTC 57.501 34.615 0.00 0.00 38.63 2.87
942 981 7.004555 TCTGCAAAGGTAGACTAATTCTTCA 57.995 36.000 0.00 0.00 35.55 3.02
943 982 7.099764 TCTGCAAAGGTAGACTAATTCTTCAG 58.900 38.462 0.00 0.00 35.55 3.02
944 983 6.769512 TGCAAAGGTAGACTAATTCTTCAGT 58.230 36.000 0.00 0.00 35.55 3.41
945 984 7.224297 TGCAAAGGTAGACTAATTCTTCAGTT 58.776 34.615 0.00 0.00 35.55 3.16
946 985 7.387948 TGCAAAGGTAGACTAATTCTTCAGTTC 59.612 37.037 0.00 0.00 35.55 3.01
971 1010 1.632409 AGGCATGTGATGGAGTTCAGT 59.368 47.619 0.00 0.00 0.00 3.41
974 1013 3.812053 GGCATGTGATGGAGTTCAGTATC 59.188 47.826 0.00 0.00 0.00 2.24
1021 1060 4.281688 CCATGGTCATCACTTTTCCAGTTT 59.718 41.667 2.57 0.00 30.92 2.66
1044 1083 3.243501 CCCACAAATGTTGTCCAGAACAG 60.244 47.826 0.00 0.00 43.23 3.16
1072 1111 1.270550 CTTGCTGCAGGGTAACTTTGG 59.729 52.381 17.12 0.00 0.00 3.28
1103 1142 5.065346 GCAGCAAATTCCTAGTTACCTTCTC 59.935 44.000 0.00 0.00 0.00 2.87
1127 1166 9.388506 CTCCAATACAGATACATTCAGAAACTT 57.611 33.333 0.00 0.00 0.00 2.66
1128 1167 9.166173 TCCAATACAGATACATTCAGAAACTTG 57.834 33.333 0.00 0.00 0.00 3.16
1138 1177 6.211515 ACATTCAGAAACTTGTGCTTCATTC 58.788 36.000 0.00 0.00 0.00 2.67
1139 1178 5.833406 TTCAGAAACTTGTGCTTCATTCA 57.167 34.783 0.00 0.00 0.00 2.57
1146 1185 5.306532 ACTTGTGCTTCATTCATGTGATC 57.693 39.130 0.00 0.00 0.00 2.92
1147 1186 4.763279 ACTTGTGCTTCATTCATGTGATCA 59.237 37.500 0.00 0.00 0.00 2.92
1165 1204 4.095334 TGATCAACGAAATGAGAATGCCTG 59.905 41.667 0.00 0.00 31.76 4.85
1179 1218 2.265739 CCTGCTCTAGTTGGCGCA 59.734 61.111 10.83 0.00 0.00 6.09
1198 1237 2.974489 GCGATGTTGCTGCTGCTGT 61.974 57.895 17.00 0.05 40.48 4.40
1363 1402 1.071299 ACCTGCAATGAGACGCACA 59.929 52.632 0.00 0.00 33.75 4.57
1368 1407 1.672030 CAATGAGACGCACAGCCCA 60.672 57.895 0.00 0.00 0.00 5.36
1389 1428 1.611673 CCGAAGCTGTTCCTGGACAAT 60.612 52.381 0.00 0.00 0.00 2.71
1401 1440 1.678970 GGACAATGGTGCCAGTCCC 60.679 63.158 15.08 5.07 43.67 4.46
1564 1603 1.446099 GCGAACAGCCTCGTCATCA 60.446 57.895 0.00 0.00 40.99 3.07
1674 1713 2.125106 GAGCCGTTCTTGCCCGAT 60.125 61.111 0.00 0.00 0.00 4.18
2020 2059 2.253452 GCCGCAGCAAGAACAGTG 59.747 61.111 0.00 0.00 39.53 3.66
2091 2130 1.288508 ATGGCTACCAGGGCAATCCA 61.289 55.000 0.00 0.00 44.59 3.41
2145 2184 1.532090 CGTCTAGCAGCTGGTAAGTCG 60.532 57.143 24.70 22.29 0.00 4.18
2170 2227 5.809001 AGCATTAGTTCATCTTTCTGTCCA 58.191 37.500 0.00 0.00 0.00 4.02
2188 2245 9.733556 TTCTGTCCACATAAAACATTACTATGT 57.266 29.630 0.00 0.00 46.85 2.29
2223 2281 0.454196 ACACCGGCACTTTTTCACAC 59.546 50.000 0.00 0.00 0.00 3.82
2224 2282 0.453793 CACCGGCACTTTTTCACACA 59.546 50.000 0.00 0.00 0.00 3.72
2225 2283 1.135257 CACCGGCACTTTTTCACACAA 60.135 47.619 0.00 0.00 0.00 3.33
2226 2284 1.754226 ACCGGCACTTTTTCACACAAT 59.246 42.857 0.00 0.00 0.00 2.71
2431 2495 0.760567 TGAGAGCATATGGACGCCCT 60.761 55.000 4.56 0.00 0.00 5.19
2551 2615 2.176889 ACTATCCTAACGCACCACACT 58.823 47.619 0.00 0.00 0.00 3.55
3268 3657 4.007644 CAGAGACTGGCGGTGGCA 62.008 66.667 2.25 0.00 42.47 4.92
3775 4348 1.304381 GAAGGGAATGGGCAGCACA 60.304 57.895 0.00 0.00 0.00 4.57
3848 4421 3.535962 GGAGGCGAGAGAGGGCAG 61.536 72.222 0.00 0.00 0.00 4.85
3977 4551 1.391826 GCTTCTAGTTCTTGCTGTCGC 59.608 52.381 0.00 0.00 0.00 5.19
4128 4702 2.368221 AGAAGAGCTTGAGACAGCAACT 59.632 45.455 0.00 0.00 42.84 3.16
4590 5164 3.185391 GCGCTTCTAGAGGTATTGCAATC 59.815 47.826 16.86 7.72 0.00 2.67
4818 5392 8.140112 ACCAAGATAGACTGAGTGAAATACTT 57.860 34.615 0.00 0.00 40.53 2.24
4819 5393 9.256228 ACCAAGATAGACTGAGTGAAATACTTA 57.744 33.333 0.00 0.00 40.53 2.24
4820 5394 9.522804 CCAAGATAGACTGAGTGAAATACTTAC 57.477 37.037 0.00 0.00 40.53 2.34
4977 5551 0.534203 TTGGAGAACACCGTGAAGGC 60.534 55.000 5.28 0.00 46.52 4.35
5167 5741 7.343057 TCATTAGATTATGTGGTCTCTCTGTGT 59.657 37.037 0.00 0.00 0.00 3.72
5288 5862 3.944422 GGCACGTGTGTTTATATCTGG 57.056 47.619 18.38 0.00 0.00 3.86
5289 5863 3.267483 GGCACGTGTGTTTATATCTGGT 58.733 45.455 18.38 0.00 0.00 4.00
5290 5864 3.308866 GGCACGTGTGTTTATATCTGGTC 59.691 47.826 18.38 0.00 0.00 4.02
5291 5865 3.308866 GCACGTGTGTTTATATCTGGTCC 59.691 47.826 18.38 0.00 0.00 4.46
5292 5866 4.755411 CACGTGTGTTTATATCTGGTCCT 58.245 43.478 7.58 0.00 0.00 3.85
5293 5867 4.804139 CACGTGTGTTTATATCTGGTCCTC 59.196 45.833 7.58 0.00 0.00 3.71
5294 5868 4.710375 ACGTGTGTTTATATCTGGTCCTCT 59.290 41.667 0.00 0.00 0.00 3.69
5295 5869 5.043903 CGTGTGTTTATATCTGGTCCTCTG 58.956 45.833 0.00 0.00 0.00 3.35
5329 5903 3.900966 ACTTTATGTACCCTCCGTTCC 57.099 47.619 0.00 0.00 0.00 3.62
5330 5904 3.447950 ACTTTATGTACCCTCCGTTCCT 58.552 45.455 0.00 0.00 0.00 3.36
5331 5905 4.613437 ACTTTATGTACCCTCCGTTCCTA 58.387 43.478 0.00 0.00 0.00 2.94
5332 5906 5.025453 ACTTTATGTACCCTCCGTTCCTAA 58.975 41.667 0.00 0.00 0.00 2.69
5333 5907 5.484998 ACTTTATGTACCCTCCGTTCCTAAA 59.515 40.000 0.00 0.00 0.00 1.85
5334 5908 6.157471 ACTTTATGTACCCTCCGTTCCTAAAT 59.843 38.462 0.00 0.00 0.00 1.40
5335 5909 7.345392 ACTTTATGTACCCTCCGTTCCTAAATA 59.655 37.037 0.00 0.00 0.00 1.40
5336 5910 5.541953 ATGTACCCTCCGTTCCTAAATAC 57.458 43.478 0.00 0.00 0.00 1.89
5337 5911 4.613437 TGTACCCTCCGTTCCTAAATACT 58.387 43.478 0.00 0.00 0.00 2.12
5338 5912 5.025453 TGTACCCTCCGTTCCTAAATACTT 58.975 41.667 0.00 0.00 0.00 2.24
5339 5913 4.482952 ACCCTCCGTTCCTAAATACTTG 57.517 45.455 0.00 0.00 0.00 3.16
5340 5914 3.842436 ACCCTCCGTTCCTAAATACTTGT 59.158 43.478 0.00 0.00 0.00 3.16
5341 5915 4.081254 ACCCTCCGTTCCTAAATACTTGTC 60.081 45.833 0.00 0.00 0.00 3.18
5342 5916 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
5343 5917 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
5344 5918 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
5345 5919 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
5346 5920 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
5347 5921 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
5348 5922 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
5349 5923 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
5350 5924 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
5351 5925 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
5352 5926 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
5353 5927 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
5354 5928 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
5356 5930 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
5357 5931 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
5358 5932 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
5359 5933 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
5360 5934 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
5361 5935 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
5362 5936 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
5363 5937 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
5364 5938 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
5365 5939 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
5366 5940 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
5367 5941 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
5368 5942 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
5369 5943 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
5370 5944 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
5371 5945 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
5372 5946 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
5373 5947 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
5374 5948 6.128661 GCATTTCAACAAGTGACTACATACGA 60.129 38.462 0.00 0.00 35.39 3.43
5375 5949 7.570507 GCATTTCAACAAGTGACTACATACGAA 60.571 37.037 0.00 0.00 35.39 3.85
5376 5950 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
5377 5951 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
5378 5952 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
5379 5953 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
5380 5954 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
5381 5955 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
5382 5956 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
5383 5957 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
5384 5958 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
5385 5959 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
5386 5960 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
5387 5961 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
5388 5962 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
5389 5963 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
5390 5964 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
5391 5965 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
5392 5966 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
5393 5967 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
5394 5968 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
5395 5969 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
5396 5970 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
5439 6013 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
5440 6014 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
5441 6015 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
5442 6016 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
5443 6017 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
5444 6018 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
5445 6019 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
5446 6020 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
5470 6044 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5471 6045 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5472 6046 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5500 6074 7.809806 AGTTCTTACAGCTGAATTTACATTTGC 59.190 33.333 23.35 0.00 0.00 3.68
5554 6129 5.046529 CACATAGAGGTGTAGAACAGATGC 58.953 45.833 0.00 0.00 34.09 3.91
5611 6186 1.680522 CTCTGGCGCCACCTCTGTAT 61.681 60.000 29.03 0.00 40.22 2.29
5612 6187 1.221840 CTGGCGCCACCTCTGTATT 59.778 57.895 29.03 0.00 40.22 1.89
5616 6191 0.391130 GCGCCACCTCTGTATTGTGA 60.391 55.000 0.00 0.00 31.66 3.58
5643 6324 2.260434 GCTACGTGACCCGAAGCA 59.740 61.111 0.00 0.00 40.70 3.91
5664 6345 0.974010 TAGTACCGCTGAAGGGTGGG 60.974 60.000 0.00 0.00 40.83 4.61
5672 6353 2.267961 GAAGGGTGGGCGGTAGTG 59.732 66.667 0.00 0.00 0.00 2.74
5685 6376 1.434696 GTAGTGCCGCTTACCGCTA 59.565 57.895 0.00 0.00 36.13 4.26
5733 6424 1.795170 TTGGAACTGCCGCTTGAAGC 61.795 55.000 7.20 7.20 40.66 3.86
5775 6479 1.037493 TACTGCGGTCCGAGCATAAT 58.963 50.000 17.49 0.00 44.26 1.28
5779 6483 0.032952 GCGGTCCGAGCATAATGGTA 59.967 55.000 17.49 0.00 34.19 3.25
5780 6484 1.539496 GCGGTCCGAGCATAATGGTAA 60.539 52.381 17.49 0.00 34.19 2.85
5789 6493 5.223382 CGAGCATAATGGTAAGATTCGTCT 58.777 41.667 0.00 0.00 0.00 4.18
5791 6495 6.412362 AGCATAATGGTAAGATTCGTCTCT 57.588 37.500 0.00 0.00 0.00 3.10
5792 6496 6.451393 AGCATAATGGTAAGATTCGTCTCTC 58.549 40.000 0.00 0.00 0.00 3.20
5803 6507 6.658188 AGATTCGTCTCTCCCTATAAAAGG 57.342 41.667 0.00 0.00 46.09 3.11
5804 6508 6.137559 AGATTCGTCTCTCCCTATAAAAGGT 58.862 40.000 0.00 0.00 44.90 3.50
5816 6561 5.191921 CCCTATAAAAGGTGGTCTTCTTCCT 59.808 44.000 0.00 0.00 44.90 3.36
5832 6577 7.826744 GTCTTCTTCCTCAATGGTTCTTATCTT 59.173 37.037 0.00 0.00 37.07 2.40
5833 6578 8.043710 TCTTCTTCCTCAATGGTTCTTATCTTC 58.956 37.037 0.00 0.00 37.07 2.87
5841 6586 5.946942 ATGGTTCTTATCTTCAGAGCTCA 57.053 39.130 17.77 0.00 0.00 4.26
5848 6593 8.510505 GTTCTTATCTTCAGAGCTCATGTTTTT 58.489 33.333 17.77 0.00 0.00 1.94
5869 6615 7.889873 TTTTCTCCATTGTTGACCTTCTTTA 57.110 32.000 0.00 0.00 0.00 1.85
5893 6639 3.556843 GCTTGCTATCTCTCAATCCCTCC 60.557 52.174 0.00 0.00 0.00 4.30
5905 6651 4.539726 TCAATCCCTCCAATGATTCTTGG 58.460 43.478 7.98 7.98 45.91 3.61
5914 6660 6.886459 CCTCCAATGATTCTTGGTTCTTCTTA 59.114 38.462 11.96 0.00 44.99 2.10
5918 6664 7.363268 CCAATGATTCTTGGTTCTTCTTAAGGG 60.363 40.741 1.85 0.00 40.72 3.95
5923 6673 7.582667 TTCTTGGTTCTTCTTAAGGGAAAAG 57.417 36.000 1.85 9.06 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.066430 GTTCGTCCCACCTAGCATCAA 60.066 52.381 0.00 0.00 0.00 2.57
21 22 3.000322 GTGTCGGAATAGCATTCTGTTCG 60.000 47.826 13.78 7.67 40.18 3.95
32 33 4.330074 AGAGCGAATTTTGTGTCGGAATAG 59.670 41.667 0.00 0.00 37.73 1.73
40 41 2.095059 GCCATGAGAGCGAATTTTGTGT 60.095 45.455 0.00 0.00 0.00 3.72
381 405 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
382 406 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
383 407 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
384 408 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
385 409 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
392 416 9.594478 TCAGTCAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 0.00 1.85
393 417 9.594478 TTCAGTCAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 0.00 2.24
394 418 9.249457 CTTCAGTCAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 0.00 2.24
395 419 7.766278 ACTTCAGTCAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 0.00 3.01
396 420 7.910304 ACTTCAGTCAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 0.00 3.95
397 421 8.131455 GACTTCAGTCAAATCTTATATGCGAA 57.869 34.615 1.86 0.00 44.18 4.70
398 422 7.700322 GACTTCAGTCAAATCTTATATGCGA 57.300 36.000 1.86 0.00 44.18 5.10
413 437 3.299340 TTACGAGGCTTGACTTCAGTC 57.701 47.619 9.20 0.00 44.97 3.51
414 438 3.069729 ACTTTACGAGGCTTGACTTCAGT 59.930 43.478 9.20 0.34 0.00 3.41
415 439 3.654414 ACTTTACGAGGCTTGACTTCAG 58.346 45.455 9.20 0.00 0.00 3.02
416 440 3.746045 ACTTTACGAGGCTTGACTTCA 57.254 42.857 9.20 0.00 0.00 3.02
417 441 4.510340 TCAAACTTTACGAGGCTTGACTTC 59.490 41.667 9.20 0.00 30.70 3.01
418 442 4.272748 GTCAAACTTTACGAGGCTTGACTT 59.727 41.667 9.20 0.00 42.80 3.01
419 443 3.808174 GTCAAACTTTACGAGGCTTGACT 59.192 43.478 9.20 0.00 42.80 3.41
420 444 3.059120 GGTCAAACTTTACGAGGCTTGAC 60.059 47.826 9.20 5.19 44.00 3.18
421 445 3.135994 GGTCAAACTTTACGAGGCTTGA 58.864 45.455 9.20 0.00 32.24 3.02
422 446 2.875933 TGGTCAAACTTTACGAGGCTTG 59.124 45.455 0.00 0.00 0.00 4.01
423 447 3.202829 TGGTCAAACTTTACGAGGCTT 57.797 42.857 0.00 0.00 0.00 4.35
424 448 2.876550 GTTGGTCAAACTTTACGAGGCT 59.123 45.455 0.00 0.00 35.75 4.58
425 449 3.263602 GTTGGTCAAACTTTACGAGGC 57.736 47.619 0.00 0.00 35.75 4.70
445 469 9.352784 TGAATGTTGACAACTTTTTCTGTAAAG 57.647 29.630 18.73 0.00 40.23 1.85
446 470 9.134734 GTGAATGTTGACAACTTTTTCTGTAAA 57.865 29.630 18.73 0.00 0.00 2.01
447 471 8.300286 TGTGAATGTTGACAACTTTTTCTGTAA 58.700 29.630 18.73 0.00 0.00 2.41
448 472 7.821652 TGTGAATGTTGACAACTTTTTCTGTA 58.178 30.769 18.73 7.70 0.00 2.74
449 473 6.686630 TGTGAATGTTGACAACTTTTTCTGT 58.313 32.000 18.73 0.00 0.00 3.41
450 474 7.447430 GTTGTGAATGTTGACAACTTTTTCTG 58.553 34.615 18.73 0.00 46.89 3.02
451 475 7.581011 GTTGTGAATGTTGACAACTTTTTCT 57.419 32.000 18.73 0.00 46.89 2.52
459 483 5.651387 TTTCAGGTTGTGAATGTTGACAA 57.349 34.783 0.00 0.00 44.89 3.18
460 484 5.359292 TGATTTCAGGTTGTGAATGTTGACA 59.641 36.000 0.00 0.00 44.89 3.58
461 485 5.830912 TGATTTCAGGTTGTGAATGTTGAC 58.169 37.500 0.00 0.00 44.89 3.18
462 486 6.462552 TTGATTTCAGGTTGTGAATGTTGA 57.537 33.333 0.00 0.00 44.89 3.18
463 487 7.329226 GGTATTGATTTCAGGTTGTGAATGTTG 59.671 37.037 0.00 0.00 44.89 3.33
464 488 7.015098 TGGTATTGATTTCAGGTTGTGAATGTT 59.985 33.333 0.00 0.00 44.89 2.71
465 489 6.493115 TGGTATTGATTTCAGGTTGTGAATGT 59.507 34.615 0.00 0.00 44.89 2.71
466 490 6.808212 GTGGTATTGATTTCAGGTTGTGAATG 59.192 38.462 0.00 0.00 44.89 2.67
467 491 6.721208 AGTGGTATTGATTTCAGGTTGTGAAT 59.279 34.615 0.00 0.00 44.89 2.57
468 492 6.068010 AGTGGTATTGATTTCAGGTTGTGAA 58.932 36.000 0.00 0.00 43.82 3.18
469 493 5.630121 AGTGGTATTGATTTCAGGTTGTGA 58.370 37.500 0.00 0.00 0.00 3.58
470 494 5.964958 AGTGGTATTGATTTCAGGTTGTG 57.035 39.130 0.00 0.00 0.00 3.33
471 495 7.016153 TCTAGTGGTATTGATTTCAGGTTGT 57.984 36.000 0.00 0.00 0.00 3.32
472 496 9.784531 ATATCTAGTGGTATTGATTTCAGGTTG 57.215 33.333 0.00 0.00 0.00 3.77
473 497 9.784531 CATATCTAGTGGTATTGATTTCAGGTT 57.215 33.333 0.00 0.00 0.00 3.50
474 498 8.938883 ACATATCTAGTGGTATTGATTTCAGGT 58.061 33.333 0.00 0.00 0.00 4.00
475 499 9.429359 GACATATCTAGTGGTATTGATTTCAGG 57.571 37.037 0.00 0.00 0.00 3.86
476 500 9.987272 TGACATATCTAGTGGTATTGATTTCAG 57.013 33.333 0.00 0.00 0.00 3.02
480 504 9.935241 GTCATGACATATCTAGTGGTATTGATT 57.065 33.333 21.07 0.00 0.00 2.57
481 505 9.319060 AGTCATGACATATCTAGTGGTATTGAT 57.681 33.333 27.02 0.00 0.00 2.57
482 506 8.712228 AGTCATGACATATCTAGTGGTATTGA 57.288 34.615 27.02 0.00 0.00 2.57
487 511 8.982723 ACTTTAAGTCATGACATATCTAGTGGT 58.017 33.333 27.02 9.50 0.00 4.16
488 512 9.823647 AACTTTAAGTCATGACATATCTAGTGG 57.176 33.333 27.02 8.95 0.00 4.00
526 550 9.889128 AATATTAACATTTGCCATGCTAAAGTT 57.111 25.926 8.40 8.40 38.29 2.66
527 551 9.889128 AAATATTAACATTTGCCATGCTAAAGT 57.111 25.926 0.00 0.00 28.32 2.66
556 580 9.438228 TCACAAAGTTTGACCGTATTTATATGA 57.562 29.630 22.23 7.49 0.00 2.15
559 583 9.275398 ACTTCACAAAGTTTGACCGTATTTATA 57.725 29.630 22.23 0.00 43.28 0.98
560 584 8.161699 ACTTCACAAAGTTTGACCGTATTTAT 57.838 30.769 22.23 0.00 43.28 1.40
561 585 7.556733 ACTTCACAAAGTTTGACCGTATTTA 57.443 32.000 22.23 0.00 43.28 1.40
562 586 6.445357 ACTTCACAAAGTTTGACCGTATTT 57.555 33.333 22.23 0.00 43.28 1.40
583 607 9.956720 CACATTAGAATTCTTTGAAGTCAAACT 57.043 29.630 14.36 1.64 40.55 2.66
584 608 8.694394 GCACATTAGAATTCTTTGAAGTCAAAC 58.306 33.333 14.36 0.00 40.55 2.93
585 609 8.412456 TGCACATTAGAATTCTTTGAAGTCAAA 58.588 29.630 14.36 6.33 42.90 2.69
586 610 7.939782 TGCACATTAGAATTCTTTGAAGTCAA 58.060 30.769 14.36 0.00 0.00 3.18
587 611 7.445096 TCTGCACATTAGAATTCTTTGAAGTCA 59.555 33.333 14.36 3.90 0.00 3.41
588 612 7.810658 TCTGCACATTAGAATTCTTTGAAGTC 58.189 34.615 14.36 0.25 0.00 3.01
589 613 7.446625 ACTCTGCACATTAGAATTCTTTGAAGT 59.553 33.333 14.36 9.79 0.00 3.01
590 614 7.814642 ACTCTGCACATTAGAATTCTTTGAAG 58.185 34.615 14.36 9.91 0.00 3.02
591 615 7.750229 ACTCTGCACATTAGAATTCTTTGAA 57.250 32.000 14.36 2.16 0.00 2.69
592 616 8.846943 TTACTCTGCACATTAGAATTCTTTGA 57.153 30.769 14.36 0.76 0.00 2.69
593 617 9.897744 TTTTACTCTGCACATTAGAATTCTTTG 57.102 29.630 14.36 13.92 0.00 2.77
596 620 8.734386 CCTTTTTACTCTGCACATTAGAATTCT 58.266 33.333 13.56 13.56 0.00 2.40
597 621 8.730680 TCCTTTTTACTCTGCACATTAGAATTC 58.269 33.333 0.00 0.00 0.00 2.17
598 622 8.515414 GTCCTTTTTACTCTGCACATTAGAATT 58.485 33.333 0.00 0.00 0.00 2.17
599 623 7.121315 GGTCCTTTTTACTCTGCACATTAGAAT 59.879 37.037 0.00 0.00 0.00 2.40
600 624 6.430000 GGTCCTTTTTACTCTGCACATTAGAA 59.570 38.462 0.00 0.00 0.00 2.10
601 625 5.938125 GGTCCTTTTTACTCTGCACATTAGA 59.062 40.000 0.00 0.00 0.00 2.10
602 626 5.163854 CGGTCCTTTTTACTCTGCACATTAG 60.164 44.000 0.00 0.00 0.00 1.73
603 627 4.693566 CGGTCCTTTTTACTCTGCACATTA 59.306 41.667 0.00 0.00 0.00 1.90
604 628 3.502211 CGGTCCTTTTTACTCTGCACATT 59.498 43.478 0.00 0.00 0.00 2.71
605 629 3.074412 CGGTCCTTTTTACTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
606 630 2.489971 CGGTCCTTTTTACTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
607 631 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
608 632 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
609 633 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
610 634 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
611 635 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
612 636 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
613 637 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
614 638 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
615 639 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
616 640 1.907255 CTACTCCCTCCGGTCCTTTTT 59.093 52.381 0.00 0.00 0.00 1.94
617 641 1.203275 ACTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
618 642 0.412640 ACTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
619 643 1.064091 GTACTACTCCCTCCGGTCCTT 60.064 57.143 0.00 0.00 0.00 3.36
620 644 0.550432 GTACTACTCCCTCCGGTCCT 59.450 60.000 0.00 0.00 0.00 3.85
621 645 0.550432 AGTACTACTCCCTCCGGTCC 59.450 60.000 0.00 0.00 0.00 4.46
622 646 2.022934 CAAGTACTACTCCCTCCGGTC 58.977 57.143 0.00 0.00 0.00 4.79
623 647 1.357079 ACAAGTACTACTCCCTCCGGT 59.643 52.381 0.00 0.00 0.00 5.28
624 648 2.140839 ACAAGTACTACTCCCTCCGG 57.859 55.000 0.00 0.00 0.00 5.14
625 649 5.649782 TTTTACAAGTACTACTCCCTCCG 57.350 43.478 0.00 0.00 0.00 4.63
626 650 8.303780 ACTATTTTACAAGTACTACTCCCTCC 57.696 38.462 0.00 0.00 0.00 4.30
628 652 9.759473 TGTACTATTTTACAAGTACTACTCCCT 57.241 33.333 12.38 0.00 45.41 4.20
777 813 2.394708 CGATGGTATGGACGTGTGATC 58.605 52.381 0.00 0.00 0.00 2.92
822 858 5.907207 TGCTCGCAGTTTTCTAGAGAATAT 58.093 37.500 0.00 0.00 36.59 1.28
935 974 5.879223 CACATGCCTAGAAGAACTGAAGAAT 59.121 40.000 0.00 0.00 0.00 2.40
936 975 5.012046 TCACATGCCTAGAAGAACTGAAGAA 59.988 40.000 0.00 0.00 0.00 2.52
937 976 4.528206 TCACATGCCTAGAAGAACTGAAGA 59.472 41.667 0.00 0.00 0.00 2.87
938 977 4.825422 TCACATGCCTAGAAGAACTGAAG 58.175 43.478 0.00 0.00 0.00 3.02
939 978 4.890158 TCACATGCCTAGAAGAACTGAA 57.110 40.909 0.00 0.00 0.00 3.02
940 979 4.383444 CCATCACATGCCTAGAAGAACTGA 60.383 45.833 0.00 0.00 0.00 3.41
941 980 3.875727 CCATCACATGCCTAGAAGAACTG 59.124 47.826 0.00 0.00 0.00 3.16
942 981 3.776969 TCCATCACATGCCTAGAAGAACT 59.223 43.478 0.00 0.00 0.00 3.01
943 982 4.125703 CTCCATCACATGCCTAGAAGAAC 58.874 47.826 0.00 0.00 0.00 3.01
944 983 3.776969 ACTCCATCACATGCCTAGAAGAA 59.223 43.478 0.00 0.00 0.00 2.52
945 984 3.378512 ACTCCATCACATGCCTAGAAGA 58.621 45.455 0.00 0.00 0.00 2.87
946 985 3.834489 ACTCCATCACATGCCTAGAAG 57.166 47.619 0.00 0.00 0.00 2.85
998 1037 3.424703 ACTGGAAAAGTGATGACCATGG 58.575 45.455 11.19 11.19 37.88 3.66
1000 1039 4.524328 GGAAACTGGAAAAGTGATGACCAT 59.476 41.667 0.00 0.00 39.81 3.55
1021 1060 2.955660 GTTCTGGACAACATTTGTGGGA 59.044 45.455 0.00 0.00 45.52 4.37
1044 1083 5.358160 AGTTACCCTGCAGCAAGAATTTATC 59.642 40.000 8.66 0.00 0.00 1.75
1072 1111 3.503748 ACTAGGAATTTGCTGCTGTTCAC 59.496 43.478 0.00 0.00 0.00 3.18
1103 1142 8.950210 ACAAGTTTCTGAATGTATCTGTATTGG 58.050 33.333 0.00 0.00 0.00 3.16
1127 1166 4.378666 CGTTGATCACATGAATGAAGCACA 60.379 41.667 0.00 0.00 30.82 4.57
1128 1167 4.093514 CGTTGATCACATGAATGAAGCAC 58.906 43.478 0.00 0.00 30.82 4.40
1138 1177 5.454554 GCATTCTCATTTCGTTGATCACATG 59.545 40.000 0.00 0.00 0.00 3.21
1139 1178 5.449588 GGCATTCTCATTTCGTTGATCACAT 60.450 40.000 0.00 0.00 0.00 3.21
1146 1185 2.163010 AGCAGGCATTCTCATTTCGTTG 59.837 45.455 0.00 0.00 0.00 4.10
1147 1186 2.421424 GAGCAGGCATTCTCATTTCGTT 59.579 45.455 0.00 0.00 0.00 3.85
1165 1204 3.558411 CGCTGCGCCAACTAGAGC 61.558 66.667 9.88 3.90 0.00 4.09
1179 1218 2.359602 AGCAGCAGCAACATCGCT 60.360 55.556 3.17 0.00 45.49 4.93
1181 1220 0.728129 CAACAGCAGCAGCAACATCG 60.728 55.000 3.17 0.00 45.49 3.84
1182 1221 1.007336 GCAACAGCAGCAGCAACATC 61.007 55.000 3.17 0.00 45.49 3.06
1183 1222 1.006571 GCAACAGCAGCAGCAACAT 60.007 52.632 3.17 0.00 45.49 2.71
1184 1223 2.122797 AGCAACAGCAGCAGCAACA 61.123 52.632 3.17 0.00 45.49 3.33
1185 1224 1.660575 CAGCAACAGCAGCAGCAAC 60.661 57.895 3.17 0.00 45.49 4.17
1186 1225 2.725641 CAGCAACAGCAGCAGCAA 59.274 55.556 3.17 0.00 45.49 3.91
1187 1226 3.973516 GCAGCAACAGCAGCAGCA 61.974 61.111 3.17 0.00 43.05 4.41
1188 1227 3.671411 AGCAGCAACAGCAGCAGC 61.671 61.111 7.56 0.00 42.49 5.25
1189 1228 2.188849 CTCAGCAGCAACAGCAGCAG 62.189 60.000 7.56 0.00 42.49 4.24
1192 1231 2.333417 CCCTCAGCAGCAACAGCAG 61.333 63.158 0.00 0.00 0.00 4.24
1206 1245 0.749454 CCAGTGTTATGCTGCCCCTC 60.749 60.000 0.00 0.00 32.93 4.30
1332 1371 1.303561 GCAGGTGACCATGAAGCCA 60.304 57.895 3.63 0.00 0.00 4.75
1363 1402 2.032681 GAACAGCTTCGGTGGGCT 59.967 61.111 0.00 0.00 39.60 5.19
1368 1407 1.371558 GTCCAGGAACAGCTTCGGT 59.628 57.895 0.00 0.00 0.00 4.69
1452 1491 2.144078 TGAAACCCAGCTCCCGACA 61.144 57.895 0.00 0.00 0.00 4.35
1564 1603 3.256960 ACGGAAGCCACACCCCAT 61.257 61.111 0.00 0.00 0.00 4.00
1830 1869 0.252696 ACCACTCCTGCTCCACCATA 60.253 55.000 0.00 0.00 0.00 2.74
1985 2024 1.607801 GCACCCAAAATCTGGCCTCC 61.608 60.000 3.32 0.00 44.90 4.30
2020 2059 1.388547 TTTGTGGAGTTGAGGCACAC 58.611 50.000 0.00 0.00 0.00 3.82
2073 2112 1.288508 ATGGATTGCCCTGGTAGCCA 61.289 55.000 1.05 1.05 35.38 4.75
2091 2130 4.342951 CCTTGGCATCCATTTGTCATGTAT 59.657 41.667 0.00 0.00 31.53 2.29
2145 2184 6.372659 TGGACAGAAAGATGAACTAATGCTTC 59.627 38.462 0.00 0.00 0.00 3.86
2188 2245 4.456566 GCCGGTGTTACTTAAATTTGAGGA 59.543 41.667 13.89 2.78 0.00 3.71
2199 2256 3.018149 TGAAAAAGTGCCGGTGTTACTT 58.982 40.909 1.90 6.52 36.29 2.24
2200 2257 2.356695 GTGAAAAAGTGCCGGTGTTACT 59.643 45.455 1.90 0.00 0.00 2.24
2551 2615 2.973600 GGGTTGGTACGCACGCAA 60.974 61.111 5.53 0.00 37.19 4.85
3775 4348 1.071471 CCAACAACAGGGAGCGACT 59.929 57.895 0.00 0.00 0.00 4.18
4128 4702 8.623903 AGAATGCGAGCTTCATCAAATTTATTA 58.376 29.630 3.34 0.00 0.00 0.98
4590 5164 2.081462 GTTGTTACCCCTGATTGGTCG 58.919 52.381 0.00 0.00 37.31 4.79
4977 5551 2.290323 ACTTCTTCCATTTCTGGGTCGG 60.290 50.000 0.00 0.00 43.34 4.79
5167 5741 9.017509 AGAACTTTATGATGAATTTCAGAAGCA 57.982 29.630 5.21 1.66 31.21 3.91
5288 5862 6.038997 AGTACAAGTGTATTTCCAGAGGAC 57.961 41.667 0.00 0.00 32.54 3.85
5289 5863 6.681729 AAGTACAAGTGTATTTCCAGAGGA 57.318 37.500 0.00 0.00 32.54 3.71
5290 5864 8.883731 CATAAAGTACAAGTGTATTTCCAGAGG 58.116 37.037 0.00 0.00 30.64 3.69
5291 5865 9.436957 ACATAAAGTACAAGTGTATTTCCAGAG 57.563 33.333 0.00 0.00 30.64 3.35
5318 5892 3.842436 ACAAGTATTTAGGAACGGAGGGT 59.158 43.478 0.00 0.00 0.00 4.34
5319 5893 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
5320 5894 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
5321 5895 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
5322 5896 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
5323 5897 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
5324 5898 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
5325 5899 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
5326 5900 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
5327 5901 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
5328 5902 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
5330 5904 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
5331 5905 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
5332 5906 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
5333 5907 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
5334 5908 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
5335 5909 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
5336 5910 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
5337 5911 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
5338 5912 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
5339 5913 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
5340 5914 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
5341 5915 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
5342 5916 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
5343 5917 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
5344 5918 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
5345 5919 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
5346 5920 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
5347 5921 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
5348 5922 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
5349 5923 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
5350 5924 7.346208 TCGTATGTAGTCACTTGTTGAAATG 57.654 36.000 0.00 0.00 35.39 2.32
5351 5925 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
5352 5926 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
5353 5927 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
5354 5928 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
5355 5929 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
5356 5930 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
5357 5931 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
5358 5932 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
5359 5933 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
5360 5934 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
5361 5935 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
5362 5936 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
5363 5937 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
5364 5938 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
5365 5939 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
5366 5940 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
5367 5941 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
5368 5942 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
5369 5943 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
5370 5944 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
5371 5945 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
5372 5946 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
5373 5947 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
5413 5987 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
5414 5988 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
5416 5990 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
5417 5991 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
5418 5992 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
5419 5993 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
5420 5994 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
5444 6018 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5445 6019 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5446 6020 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5447 6021 8.101419 ACTCCGTTCCTAAATATTTGTCTTTCT 58.899 33.333 11.05 0.00 0.00 2.52
5448 6022 8.265165 ACTCCGTTCCTAAATATTTGTCTTTC 57.735 34.615 11.05 0.00 0.00 2.62
5449 6023 9.379791 CTACTCCGTTCCTAAATATTTGTCTTT 57.620 33.333 11.05 0.00 0.00 2.52
5450 6024 8.537858 ACTACTCCGTTCCTAAATATTTGTCTT 58.462 33.333 11.05 0.00 0.00 3.01
5451 6025 8.075761 ACTACTCCGTTCCTAAATATTTGTCT 57.924 34.615 11.05 0.00 0.00 3.41
5452 6026 8.713737 AACTACTCCGTTCCTAAATATTTGTC 57.286 34.615 11.05 0.00 0.00 3.18
5453 6027 8.537858 AGAACTACTCCGTTCCTAAATATTTGT 58.462 33.333 11.05 0.00 43.27 2.83
5454 6028 8.943909 AGAACTACTCCGTTCCTAAATATTTG 57.056 34.615 11.05 1.40 43.27 2.32
5457 6031 9.193806 TGTAAGAACTACTCCGTTCCTAAATAT 57.806 33.333 0.00 0.00 43.27 1.28
5458 6032 8.579850 TGTAAGAACTACTCCGTTCCTAAATA 57.420 34.615 0.00 0.00 43.27 1.40
5459 6033 7.472334 TGTAAGAACTACTCCGTTCCTAAAT 57.528 36.000 0.00 0.00 43.27 1.40
5460 6034 6.571150 GCTGTAAGAACTACTCCGTTCCTAAA 60.571 42.308 0.00 0.00 43.27 1.85
5461 6035 5.105997 GCTGTAAGAACTACTCCGTTCCTAA 60.106 44.000 0.00 0.00 43.27 2.69
5462 6036 4.397417 GCTGTAAGAACTACTCCGTTCCTA 59.603 45.833 0.00 0.00 43.27 2.94
5463 6037 3.193056 GCTGTAAGAACTACTCCGTTCCT 59.807 47.826 0.00 0.00 43.27 3.36
5464 6038 3.193056 AGCTGTAAGAACTACTCCGTTCC 59.807 47.826 0.00 0.00 43.27 3.62
5465 6039 4.082895 TCAGCTGTAAGAACTACTCCGTTC 60.083 45.833 14.67 0.00 42.73 3.95
5466 6040 3.825014 TCAGCTGTAAGAACTACTCCGTT 59.175 43.478 14.67 0.00 34.07 4.44
5467 6041 3.418995 TCAGCTGTAAGAACTACTCCGT 58.581 45.455 14.67 0.00 34.07 4.69
5468 6042 4.436242 TTCAGCTGTAAGAACTACTCCG 57.564 45.455 14.67 0.00 34.07 4.63
5469 6043 7.817962 TGTAAATTCAGCTGTAAGAACTACTCC 59.182 37.037 14.67 0.00 34.07 3.85
5470 6044 8.758633 TGTAAATTCAGCTGTAAGAACTACTC 57.241 34.615 14.67 0.00 34.07 2.59
5471 6045 9.726438 AATGTAAATTCAGCTGTAAGAACTACT 57.274 29.630 14.67 0.00 34.07 2.57
5546 6121 3.618150 GCAAAACAAACTGTGCATCTGTT 59.382 39.130 0.00 0.00 39.31 3.16
5643 6324 1.183549 CACCCTTCAGCGGTACTACT 58.816 55.000 0.00 0.00 30.42 2.57
5714 6405 1.795170 GCTTCAAGCGGCAGTTCCAA 61.795 55.000 1.45 0.00 34.01 3.53
5727 6418 1.402968 CTACCGCTACTACCGCTTCAA 59.597 52.381 0.00 0.00 0.00 2.69
5760 6463 0.032952 TACCATTATGCTCGGACCGC 59.967 55.000 9.66 0.00 0.00 5.68
5764 6467 4.038763 ACGAATCTTACCATTATGCTCGGA 59.961 41.667 0.00 0.00 0.00 4.55
5767 6470 6.451393 AGAGACGAATCTTACCATTATGCTC 58.549 40.000 0.00 0.00 34.34 4.26
5775 6479 3.383698 AGGGAGAGACGAATCTTACCA 57.616 47.619 13.96 0.00 34.34 3.25
5779 6483 7.056844 CCTTTTATAGGGAGAGACGAATCTT 57.943 40.000 0.00 0.00 40.67 2.40
5780 6484 6.658188 CCTTTTATAGGGAGAGACGAATCT 57.342 41.667 0.00 0.00 40.67 2.40
5803 6507 3.425162 ACCATTGAGGAAGAAGACCAC 57.575 47.619 0.00 0.00 41.22 4.16
5804 6508 3.652869 AGAACCATTGAGGAAGAAGACCA 59.347 43.478 0.00 0.00 41.22 4.02
5816 6561 6.070596 TGAGCTCTGAAGATAAGAACCATTGA 60.071 38.462 16.19 0.00 0.00 2.57
5832 6577 4.356405 TGGAGAAAAACATGAGCTCTGA 57.644 40.909 16.19 0.00 0.00 3.27
5833 6578 5.048224 ACAATGGAGAAAAACATGAGCTCTG 60.048 40.000 16.19 12.83 0.00 3.35
5841 6586 6.324770 AGAAGGTCAACAATGGAGAAAAACAT 59.675 34.615 0.00 0.00 0.00 2.71
5848 6593 5.473504 GCTTAAAGAAGGTCAACAATGGAGA 59.526 40.000 0.00 0.00 32.84 3.71
5869 6615 3.715834 AGGGATTGAGAGATAGCAAGCTT 59.284 43.478 0.00 0.00 31.57 3.74
5893 6639 7.394359 TCCCTTAAGAAGAACCAAGAATCATTG 59.606 37.037 3.36 0.00 0.00 2.82
5905 6651 7.672240 TCTCTCTCTTTTCCCTTAAGAAGAAC 58.328 38.462 3.36 0.00 31.67 3.01
5914 6660 7.418378 TCTAGATCTTCTCTCTCTTTTCCCTT 58.582 38.462 0.00 0.00 35.28 3.95
5979 6729 5.966935 TCCAAGATCTAGATCAGAAGGGTTT 59.033 40.000 29.83 13.15 40.22 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.