Multiple sequence alignment - TraesCS7A01G242700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G242700 chr7A 100.000 3784 0 0 1 3784 218231622 218235405 0.000000e+00 6988.0
1 TraesCS7A01G242700 chr7A 95.205 292 14 0 1 292 218211290 218211581 2.660000e-126 462.0
2 TraesCS7A01G242700 chr7A 93.960 298 17 1 1 298 322055286 322055582 2.070000e-122 449.0
3 TraesCS7A01G242700 chr7A 91.667 96 8 0 2997 3092 218234519 218234614 2.370000e-27 134.0
4 TraesCS7A01G242700 chr7A 91.667 96 8 0 2898 2993 218234618 218234713 2.370000e-27 134.0
5 TraesCS7A01G242700 chr7D 93.625 2102 112 12 1684 3784 205729347 205731427 0.000000e+00 3120.0
6 TraesCS7A01G242700 chr7D 90.792 619 45 7 974 1584 205728640 205729254 0.000000e+00 817.0
7 TraesCS7A01G242700 chr7D 94.898 196 9 1 723 918 205728417 205728611 4.750000e-79 305.0
8 TraesCS7A01G242700 chr7D 91.667 96 8 0 2997 3092 205730549 205730644 2.370000e-27 134.0
9 TraesCS7A01G242700 chr7D 89.583 96 9 1 2898 2993 205730648 205730742 1.850000e-23 121.0
10 TraesCS7A01G242700 chr7B 92.805 1376 85 9 1790 3159 196390822 196389455 0.000000e+00 1980.0
11 TraesCS7A01G242700 chr7B 89.208 871 60 12 737 1588 196391903 196391048 0.000000e+00 1057.0
12 TraesCS7A01G242700 chr7B 89.440 625 40 8 3161 3784 196388018 196387419 0.000000e+00 765.0
13 TraesCS7A01G242700 chr7B 83.011 465 60 6 293 750 196392403 196391951 1.640000e-108 403.0
14 TraesCS7A01G242700 chr7B 89.899 99 9 1 2898 2996 196389615 196389518 3.970000e-25 126.0
15 TraesCS7A01G242700 chr7B 96.078 51 1 1 1684 1733 196390975 196390925 8.710000e-12 82.4
16 TraesCS7A01G242700 chr4A 94.863 292 15 0 1 292 459519908 459520199 1.240000e-124 457.0
17 TraesCS7A01G242700 chr4A 94.576 295 15 1 1 295 7447437 7447144 4.460000e-124 455.0
18 TraesCS7A01G242700 chr4A 81.418 409 59 11 3257 3654 107789363 107789765 6.100000e-83 318.0
19 TraesCS7A01G242700 chr2A 94.863 292 15 0 1 292 717281551 717281260 1.240000e-124 457.0
20 TraesCS7A01G242700 chr2A 94.539 293 15 1 1 293 527726308 527726017 5.760000e-123 451.0
21 TraesCS7A01G242700 chr2A 80.672 119 20 3 337 452 770108675 770108557 5.210000e-14 89.8
22 TraesCS7A01G242700 chr6A 94.521 292 16 0 1 292 129819682 129819973 5.760000e-123 451.0
23 TraesCS7A01G242700 chr3A 94.539 293 15 1 1 293 57629640 57629349 5.760000e-123 451.0
24 TraesCS7A01G242700 chr3A 94.198 293 16 1 1 293 209275099 209275390 2.680000e-121 446.0
25 TraesCS7A01G242700 chr3A 79.858 422 55 21 3257 3656 119374254 119374667 8.000000e-72 281.0
26 TraesCS7A01G242700 chr1A 80.203 591 87 20 2423 2995 575385255 575385833 2.100000e-112 416.0
27 TraesCS7A01G242700 chr4D 83.698 411 47 7 3257 3657 190317182 190317582 1.660000e-98 370.0
28 TraesCS7A01G242700 chr4B 80.676 414 62 10 3257 3656 450869668 450869259 4.750000e-79 305.0
29 TraesCS7A01G242700 chr2D 81.088 386 56 10 3289 3662 527264323 527264703 3.700000e-75 292.0
30 TraesCS7A01G242700 chr3B 79.208 404 65 12 3266 3656 389095291 389095688 2.900000e-66 263.0
31 TraesCS7A01G242700 chr2B 78.517 391 63 13 3257 3634 4600447 4600829 1.760000e-58 237.0
32 TraesCS7A01G242700 chr1D 89.266 177 14 4 2423 2595 479103893 479104068 2.290000e-52 217.0
33 TraesCS7A01G242700 chr1D 78.235 340 59 8 2662 2995 479104226 479104556 1.780000e-48 204.0
34 TraesCS7A01G242700 chr5B 100.000 29 0 0 353 381 382572556 382572528 2.000000e-03 54.7
35 TraesCS7A01G242700 chr1B 86.000 50 7 0 331 380 447161776 447161825 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G242700 chr7A 218231622 218235405 3783 False 2418.666667 6988 94.444667 1 3784 3 chr7A.!!$F3 3783
1 TraesCS7A01G242700 chr7D 205728417 205731427 3010 False 899.400000 3120 92.113000 723 3784 5 chr7D.!!$F1 3061
2 TraesCS7A01G242700 chr7B 196387419 196392403 4984 True 735.566667 1980 90.073500 293 3784 6 chr7B.!!$R1 3491
3 TraesCS7A01G242700 chr1A 575385255 575385833 578 False 416.000000 416 80.203000 2423 2995 1 chr1A.!!$F1 572
4 TraesCS7A01G242700 chr1D 479103893 479104556 663 False 210.500000 217 83.750500 2423 2995 2 chr1D.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.035439 ATCGGGGTCTTTGTCGCATT 60.035 50.0 0.00 0.0 0.00 3.56 F
255 256 0.109272 TGCCTCTAAGTCGTGCTTCG 60.109 55.0 0.00 0.0 38.57 3.79 F
1076 1158 0.105039 GTCCCGAACCAGCATAGGAG 59.895 60.0 0.00 0.0 0.00 3.69 F
1772 1893 0.035630 GTTCTGAGGCTGCCAGTGAT 60.036 55.0 22.65 0.0 33.57 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1058 1140 0.032515 TCTCCTATGCTGGTTCGGGA 60.033 55.0 0.00 0.00 0.00 5.14 R
1753 1874 0.035630 ATCACTGGCAGCCTCAGAAC 60.036 55.0 15.89 0.00 36.22 3.01 R
1928 2110 0.324943 ACTGAGGCACATGGGTACAC 59.675 55.0 0.00 0.00 0.00 2.90 R
3690 5454 0.411058 AAAGAATGCCAAGGCCCTCT 59.589 50.0 8.89 7.38 41.09 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.765314 AGATGATCAGTAGTGGTGCCC 59.235 52.381 0.09 0.00 0.00 5.36
21 22 1.486310 GATGATCAGTAGTGGTGCCCA 59.514 52.381 0.09 0.00 0.00 5.36
22 23 0.904649 TGATCAGTAGTGGTGCCCAG 59.095 55.000 0.00 0.00 32.34 4.45
23 24 0.905357 GATCAGTAGTGGTGCCCAGT 59.095 55.000 6.76 6.76 40.67 4.00
24 25 1.279271 GATCAGTAGTGGTGCCCAGTT 59.721 52.381 6.85 0.00 38.30 3.16
25 26 0.396435 TCAGTAGTGGTGCCCAGTTG 59.604 55.000 6.85 1.82 38.30 3.16
26 27 0.606401 CAGTAGTGGTGCCCAGTTGG 60.606 60.000 6.85 0.00 38.30 3.77
36 37 4.856801 CCAGTTGGGGCGATCGGG 62.857 72.222 18.30 2.60 0.00 5.14
37 38 4.856801 CAGTTGGGGCGATCGGGG 62.857 72.222 18.30 0.00 0.00 5.73
39 40 4.851179 GTTGGGGCGATCGGGGTC 62.851 72.222 18.30 0.00 0.00 4.46
42 43 3.793888 GGGGCGATCGGGGTCTTT 61.794 66.667 18.30 0.00 0.00 2.52
43 44 2.513897 GGGCGATCGGGGTCTTTG 60.514 66.667 18.30 0.00 0.00 2.77
44 45 2.267961 GGCGATCGGGGTCTTTGT 59.732 61.111 18.30 0.00 0.00 2.83
45 46 1.814169 GGCGATCGGGGTCTTTGTC 60.814 63.158 18.30 0.00 0.00 3.18
46 47 2.165301 GCGATCGGGGTCTTTGTCG 61.165 63.158 18.30 0.00 0.00 4.35
47 48 2.165301 CGATCGGGGTCTTTGTCGC 61.165 63.158 7.38 0.00 0.00 5.19
48 49 1.079405 GATCGGGGTCTTTGTCGCA 60.079 57.895 0.00 0.00 0.00 5.10
49 50 0.462047 GATCGGGGTCTTTGTCGCAT 60.462 55.000 0.00 0.00 0.00 4.73
50 51 0.035439 ATCGGGGTCTTTGTCGCATT 60.035 50.000 0.00 0.00 0.00 3.56
51 52 0.250553 TCGGGGTCTTTGTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
52 53 0.109781 CGGGGTCTTTGTCGCATTTG 60.110 55.000 0.00 0.00 0.00 2.32
53 54 0.243636 GGGGTCTTTGTCGCATTTGG 59.756 55.000 0.00 0.00 0.00 3.28
54 55 0.243636 GGGTCTTTGTCGCATTTGGG 59.756 55.000 0.00 0.00 0.00 4.12
55 56 0.243636 GGTCTTTGTCGCATTTGGGG 59.756 55.000 0.00 0.00 0.00 4.96
56 57 0.243636 GTCTTTGTCGCATTTGGGGG 59.756 55.000 0.00 0.00 0.00 5.40
57 58 0.178975 TCTTTGTCGCATTTGGGGGT 60.179 50.000 0.00 0.00 0.00 4.95
58 59 0.678950 CTTTGTCGCATTTGGGGGTT 59.321 50.000 0.00 0.00 0.00 4.11
59 60 0.390860 TTTGTCGCATTTGGGGGTTG 59.609 50.000 0.00 0.00 0.00 3.77
60 61 0.468214 TTGTCGCATTTGGGGGTTGA 60.468 50.000 0.00 0.00 0.00 3.18
61 62 0.251564 TGTCGCATTTGGGGGTTGAT 60.252 50.000 0.00 0.00 0.00 2.57
62 63 1.004862 TGTCGCATTTGGGGGTTGATA 59.995 47.619 0.00 0.00 0.00 2.15
63 64 2.306847 GTCGCATTTGGGGGTTGATAT 58.693 47.619 0.00 0.00 0.00 1.63
64 65 2.693074 GTCGCATTTGGGGGTTGATATT 59.307 45.455 0.00 0.00 0.00 1.28
65 66 3.132111 GTCGCATTTGGGGGTTGATATTT 59.868 43.478 0.00 0.00 0.00 1.40
66 67 4.339814 GTCGCATTTGGGGGTTGATATTTA 59.660 41.667 0.00 0.00 0.00 1.40
67 68 5.010617 GTCGCATTTGGGGGTTGATATTTAT 59.989 40.000 0.00 0.00 0.00 1.40
68 69 5.600484 TCGCATTTGGGGGTTGATATTTATT 59.400 36.000 0.00 0.00 0.00 1.40
69 70 6.098982 TCGCATTTGGGGGTTGATATTTATTT 59.901 34.615 0.00 0.00 0.00 1.40
70 71 6.765512 CGCATTTGGGGGTTGATATTTATTTT 59.234 34.615 0.00 0.00 0.00 1.82
71 72 7.254727 CGCATTTGGGGGTTGATATTTATTTTG 60.255 37.037 0.00 0.00 0.00 2.44
72 73 7.013178 GCATTTGGGGGTTGATATTTATTTTGG 59.987 37.037 0.00 0.00 0.00 3.28
73 74 7.575499 TTTGGGGGTTGATATTTATTTTGGT 57.425 32.000 0.00 0.00 0.00 3.67
74 75 8.680820 TTTGGGGGTTGATATTTATTTTGGTA 57.319 30.769 0.00 0.00 0.00 3.25
75 76 7.663043 TGGGGGTTGATATTTATTTTGGTAC 57.337 36.000 0.00 0.00 0.00 3.34
76 77 6.612049 TGGGGGTTGATATTTATTTTGGTACC 59.388 38.462 4.43 4.43 0.00 3.34
77 78 6.239092 GGGGGTTGATATTTATTTTGGTACCG 60.239 42.308 7.57 0.00 0.00 4.02
78 79 6.321945 GGGGTTGATATTTATTTTGGTACCGT 59.678 38.462 7.57 0.00 0.00 4.83
79 80 7.501892 GGGGTTGATATTTATTTTGGTACCGTA 59.498 37.037 7.57 0.00 0.00 4.02
80 81 8.562052 GGGTTGATATTTATTTTGGTACCGTAG 58.438 37.037 7.57 0.00 0.00 3.51
81 82 9.112725 GGTTGATATTTATTTTGGTACCGTAGT 57.887 33.333 7.57 0.00 0.00 2.73
83 84 9.887629 TTGATATTTATTTTGGTACCGTAGTCA 57.112 29.630 7.57 0.00 0.00 3.41
84 85 9.537192 TGATATTTATTTTGGTACCGTAGTCAG 57.463 33.333 7.57 0.00 0.00 3.51
85 86 9.754382 GATATTTATTTTGGTACCGTAGTCAGA 57.246 33.333 7.57 0.00 0.00 3.27
86 87 7.838771 ATTTATTTTGGTACCGTAGTCAGAC 57.161 36.000 7.57 0.00 0.00 3.51
87 88 3.665745 TTTTGGTACCGTAGTCAGACC 57.334 47.619 7.57 0.00 0.00 3.85
88 89 2.291209 TTGGTACCGTAGTCAGACCA 57.709 50.000 7.57 0.00 38.41 4.02
89 90 2.519771 TGGTACCGTAGTCAGACCAT 57.480 50.000 7.57 0.00 35.26 3.55
90 91 2.097036 TGGTACCGTAGTCAGACCATG 58.903 52.381 7.57 0.00 35.26 3.66
91 92 2.291089 TGGTACCGTAGTCAGACCATGA 60.291 50.000 7.57 0.00 35.26 3.07
92 93 2.756760 GGTACCGTAGTCAGACCATGAA 59.243 50.000 0.00 0.00 40.43 2.57
93 94 3.383825 GGTACCGTAGTCAGACCATGAAT 59.616 47.826 0.00 0.00 40.43 2.57
94 95 3.526931 ACCGTAGTCAGACCATGAATG 57.473 47.619 0.00 0.00 40.43 2.67
95 96 2.832129 ACCGTAGTCAGACCATGAATGT 59.168 45.455 0.00 0.00 40.43 2.71
96 97 4.021229 ACCGTAGTCAGACCATGAATGTA 58.979 43.478 0.00 0.00 40.43 2.29
97 98 4.649674 ACCGTAGTCAGACCATGAATGTAT 59.350 41.667 0.00 0.00 40.43 2.29
98 99 5.128827 ACCGTAGTCAGACCATGAATGTATT 59.871 40.000 0.00 0.00 40.43 1.89
99 100 5.463392 CCGTAGTCAGACCATGAATGTATTG 59.537 44.000 0.00 0.00 40.43 1.90
100 101 5.463392 CGTAGTCAGACCATGAATGTATTGG 59.537 44.000 0.00 0.00 40.43 3.16
101 102 5.698741 AGTCAGACCATGAATGTATTGGA 57.301 39.130 0.00 0.00 40.43 3.53
102 103 6.257994 AGTCAGACCATGAATGTATTGGAT 57.742 37.500 0.00 0.00 40.43 3.41
103 104 6.060136 AGTCAGACCATGAATGTATTGGATG 58.940 40.000 0.00 0.00 40.43 3.51
104 105 6.057533 GTCAGACCATGAATGTATTGGATGA 58.942 40.000 0.00 0.00 40.43 2.92
105 106 6.543465 GTCAGACCATGAATGTATTGGATGAA 59.457 38.462 0.00 0.00 40.43 2.57
106 107 7.230108 GTCAGACCATGAATGTATTGGATGAAT 59.770 37.037 0.00 0.00 40.43 2.57
107 108 7.229907 TCAGACCATGAATGTATTGGATGAATG 59.770 37.037 0.00 0.00 34.02 2.67
108 109 7.013942 CAGACCATGAATGTATTGGATGAATGT 59.986 37.037 0.00 0.00 34.52 2.71
109 110 8.219868 AGACCATGAATGTATTGGATGAATGTA 58.780 33.333 0.00 0.00 34.52 2.29
110 111 8.765488 ACCATGAATGTATTGGATGAATGTAA 57.235 30.769 0.00 0.00 34.52 2.41
111 112 9.370930 ACCATGAATGTATTGGATGAATGTAAT 57.629 29.630 0.00 0.00 34.52 1.89
112 113 9.634163 CCATGAATGTATTGGATGAATGTAATG 57.366 33.333 0.00 0.00 31.94 1.90
115 116 9.631257 TGAATGTATTGGATGAATGTAATGACT 57.369 29.630 0.00 0.00 0.00 3.41
135 136 8.915871 ATGACTTATTTATGCATTTGTGTGAC 57.084 30.769 3.54 0.00 0.00 3.67
136 137 7.020602 TGACTTATTTATGCATTTGTGTGACG 58.979 34.615 3.54 0.00 0.00 4.35
137 138 6.908825 ACTTATTTATGCATTTGTGTGACGT 58.091 32.000 3.54 0.00 0.00 4.34
138 139 6.801377 ACTTATTTATGCATTTGTGTGACGTG 59.199 34.615 3.54 0.00 0.00 4.49
139 140 4.820284 TTTATGCATTTGTGTGACGTGA 57.180 36.364 3.54 0.00 0.00 4.35
140 141 2.686558 ATGCATTTGTGTGACGTGAC 57.313 45.000 0.00 0.00 0.00 3.67
141 142 0.303191 TGCATTTGTGTGACGTGACG 59.697 50.000 2.24 2.24 0.00 4.35
142 143 0.579630 GCATTTGTGTGACGTGACGA 59.420 50.000 13.70 0.00 0.00 4.20
143 144 1.397190 GCATTTGTGTGACGTGACGAG 60.397 52.381 13.70 0.00 0.00 4.18
144 145 1.858458 CATTTGTGTGACGTGACGAGT 59.142 47.619 13.70 0.00 0.00 4.18
145 146 1.273688 TTTGTGTGACGTGACGAGTG 58.726 50.000 13.70 0.00 0.00 3.51
146 147 0.171679 TTGTGTGACGTGACGAGTGT 59.828 50.000 13.70 0.00 0.00 3.55
147 148 1.015868 TGTGTGACGTGACGAGTGTA 58.984 50.000 13.70 0.00 0.00 2.90
148 149 1.401199 TGTGTGACGTGACGAGTGTAA 59.599 47.619 13.70 0.00 0.00 2.41
149 150 2.041966 GTGTGACGTGACGAGTGTAAG 58.958 52.381 13.70 0.00 0.00 2.34
150 151 1.672363 TGTGACGTGACGAGTGTAAGT 59.328 47.619 13.70 0.00 0.00 2.24
151 152 2.286595 TGTGACGTGACGAGTGTAAGTC 60.287 50.000 13.70 0.00 37.85 3.01
152 153 1.941975 TGACGTGACGAGTGTAAGTCA 59.058 47.619 13.70 0.00 44.11 3.41
159 160 5.700722 TGACGAGTGTAAGTCAACTATGT 57.299 39.130 0.00 0.00 43.47 2.29
160 161 6.806388 TGACGAGTGTAAGTCAACTATGTA 57.194 37.500 0.00 0.00 43.47 2.29
161 162 6.605849 TGACGAGTGTAAGTCAACTATGTAC 58.394 40.000 0.00 0.00 43.47 2.90
162 163 6.205270 TGACGAGTGTAAGTCAACTATGTACA 59.795 38.462 0.00 0.00 43.47 2.90
163 164 7.094506 TGACGAGTGTAAGTCAACTATGTACAT 60.095 37.037 13.93 13.93 43.47 2.29
164 165 7.600065 ACGAGTGTAAGTCAACTATGTACATT 58.400 34.615 14.77 0.00 35.50 2.71
165 166 8.086522 ACGAGTGTAAGTCAACTATGTACATTT 58.913 33.333 14.77 0.00 35.50 2.32
166 167 8.584600 CGAGTGTAAGTCAACTATGTACATTTC 58.415 37.037 14.77 0.00 35.50 2.17
167 168 8.773404 AGTGTAAGTCAACTATGTACATTTCC 57.227 34.615 14.77 0.00 0.00 3.13
168 169 7.822822 AGTGTAAGTCAACTATGTACATTTCCC 59.177 37.037 14.77 0.00 0.00 3.97
169 170 7.065443 GTGTAAGTCAACTATGTACATTTCCCC 59.935 40.741 14.77 0.00 0.00 4.81
170 171 6.388619 AAGTCAACTATGTACATTTCCCCT 57.611 37.500 14.77 1.08 0.00 4.79
171 172 6.388619 AGTCAACTATGTACATTTCCCCTT 57.611 37.500 14.77 0.00 0.00 3.95
172 173 6.790319 AGTCAACTATGTACATTTCCCCTTT 58.210 36.000 14.77 0.00 0.00 3.11
173 174 7.924541 AGTCAACTATGTACATTTCCCCTTTA 58.075 34.615 14.77 0.00 0.00 1.85
174 175 8.557450 AGTCAACTATGTACATTTCCCCTTTAT 58.443 33.333 14.77 0.00 0.00 1.40
175 176 9.185680 GTCAACTATGTACATTTCCCCTTTATT 57.814 33.333 14.77 0.00 0.00 1.40
176 177 9.762381 TCAACTATGTACATTTCCCCTTTATTT 57.238 29.630 14.77 0.00 0.00 1.40
199 200 9.897744 ATTTATATACATTGGTTGATTGCGAAG 57.102 29.630 0.00 0.00 0.00 3.79
200 201 8.669946 TTATATACATTGGTTGATTGCGAAGA 57.330 30.769 0.00 0.00 0.00 2.87
201 202 7.750229 ATATACATTGGTTGATTGCGAAGAT 57.250 32.000 0.00 0.00 0.00 2.40
202 203 4.789012 ACATTGGTTGATTGCGAAGATT 57.211 36.364 0.00 0.00 0.00 2.40
203 204 5.895636 ACATTGGTTGATTGCGAAGATTA 57.104 34.783 0.00 0.00 0.00 1.75
204 205 5.640732 ACATTGGTTGATTGCGAAGATTAC 58.359 37.500 0.00 0.00 0.00 1.89
205 206 4.695217 TTGGTTGATTGCGAAGATTACC 57.305 40.909 0.00 0.00 0.00 2.85
206 207 3.950397 TGGTTGATTGCGAAGATTACCT 58.050 40.909 0.00 0.00 0.00 3.08
207 208 3.938963 TGGTTGATTGCGAAGATTACCTC 59.061 43.478 0.00 0.00 0.00 3.85
208 209 3.938963 GGTTGATTGCGAAGATTACCTCA 59.061 43.478 0.00 0.00 0.00 3.86
209 210 4.201822 GGTTGATTGCGAAGATTACCTCAC 60.202 45.833 0.00 0.00 0.00 3.51
210 211 4.471904 TGATTGCGAAGATTACCTCACT 57.528 40.909 0.00 0.00 0.00 3.41
211 212 4.832248 TGATTGCGAAGATTACCTCACTT 58.168 39.130 0.00 0.00 0.00 3.16
212 213 4.631377 TGATTGCGAAGATTACCTCACTTG 59.369 41.667 0.00 0.00 0.00 3.16
213 214 2.346803 TGCGAAGATTACCTCACTTGC 58.653 47.619 0.00 0.00 0.00 4.01
214 215 1.324736 GCGAAGATTACCTCACTTGCG 59.675 52.381 0.00 0.00 0.00 4.85
215 216 2.876091 CGAAGATTACCTCACTTGCGA 58.124 47.619 0.00 0.00 0.00 5.10
216 217 2.599082 CGAAGATTACCTCACTTGCGAC 59.401 50.000 0.00 0.00 0.00 5.19
217 218 3.585862 GAAGATTACCTCACTTGCGACA 58.414 45.455 0.00 0.00 0.00 4.35
218 219 3.895232 AGATTACCTCACTTGCGACAT 57.105 42.857 0.00 0.00 0.00 3.06
219 220 4.207891 AGATTACCTCACTTGCGACATT 57.792 40.909 0.00 0.00 0.00 2.71
220 221 3.935203 AGATTACCTCACTTGCGACATTG 59.065 43.478 0.00 0.00 0.00 2.82
221 222 1.438651 TACCTCACTTGCGACATTGC 58.561 50.000 0.00 0.00 0.00 3.56
222 223 0.250467 ACCTCACTTGCGACATTGCT 60.250 50.000 0.00 0.00 35.36 3.91
223 224 0.877071 CCTCACTTGCGACATTGCTT 59.123 50.000 0.00 0.00 35.36 3.91
224 225 1.267806 CCTCACTTGCGACATTGCTTT 59.732 47.619 0.00 0.00 35.36 3.51
225 226 2.578495 CTCACTTGCGACATTGCTTTC 58.422 47.619 0.00 0.00 35.36 2.62
226 227 1.946081 TCACTTGCGACATTGCTTTCA 59.054 42.857 0.00 0.00 35.36 2.69
227 228 2.357323 TCACTTGCGACATTGCTTTCAA 59.643 40.909 0.00 0.00 36.51 2.69
228 229 3.004629 TCACTTGCGACATTGCTTTCAAT 59.995 39.130 0.00 0.00 43.31 2.57
238 239 2.276472 TGCTTTCAATGCGGTTATGC 57.724 45.000 0.00 0.00 0.00 3.14
239 240 1.135141 TGCTTTCAATGCGGTTATGCC 60.135 47.619 0.00 0.00 0.00 4.40
240 241 1.134946 GCTTTCAATGCGGTTATGCCT 59.865 47.619 0.00 0.00 34.25 4.75
241 242 2.796032 GCTTTCAATGCGGTTATGCCTC 60.796 50.000 0.00 0.00 34.25 4.70
242 243 2.418368 TTCAATGCGGTTATGCCTCT 57.582 45.000 0.00 0.00 34.25 3.69
243 244 3.552132 TTCAATGCGGTTATGCCTCTA 57.448 42.857 0.00 0.00 34.25 2.43
244 245 3.552132 TCAATGCGGTTATGCCTCTAA 57.448 42.857 0.00 0.00 34.25 2.10
245 246 3.466836 TCAATGCGGTTATGCCTCTAAG 58.533 45.455 0.00 0.00 34.25 2.18
246 247 3.118408 TCAATGCGGTTATGCCTCTAAGT 60.118 43.478 0.00 0.00 34.25 2.24
247 248 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
248 249 1.202371 TGCGGTTATGCCTCTAAGTCG 60.202 52.381 0.00 0.00 34.25 4.18
249 250 1.202382 GCGGTTATGCCTCTAAGTCGT 60.202 52.381 0.00 0.00 34.25 4.34
250 251 2.460918 CGGTTATGCCTCTAAGTCGTG 58.539 52.381 0.00 0.00 34.25 4.35
251 252 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
252 253 2.159085 GGTTATGCCTCTAAGTCGTGCT 60.159 50.000 0.00 0.00 0.00 4.40
253 254 3.522553 GTTATGCCTCTAAGTCGTGCTT 58.477 45.455 0.00 1.30 41.05 3.91
254 255 2.301577 ATGCCTCTAAGTCGTGCTTC 57.698 50.000 0.00 0.00 38.57 3.86
255 256 0.109272 TGCCTCTAAGTCGTGCTTCG 60.109 55.000 0.00 0.00 38.57 3.79
256 257 0.170561 GCCTCTAAGTCGTGCTTCGA 59.829 55.000 0.92 0.92 46.83 3.71
265 266 2.028484 GTGCTTCGACACGTGGGA 59.972 61.111 21.57 13.88 0.00 4.37
266 267 2.022129 GTGCTTCGACACGTGGGAG 61.022 63.158 21.57 8.15 0.00 4.30
267 268 2.197605 TGCTTCGACACGTGGGAGA 61.198 57.895 21.57 12.82 0.00 3.71
268 269 1.215647 GCTTCGACACGTGGGAGAT 59.784 57.895 21.57 0.00 0.00 2.75
269 270 0.454600 GCTTCGACACGTGGGAGATA 59.545 55.000 21.57 1.34 0.00 1.98
270 271 1.067212 GCTTCGACACGTGGGAGATAT 59.933 52.381 21.57 0.00 0.00 1.63
271 272 2.292569 GCTTCGACACGTGGGAGATATA 59.707 50.000 21.57 0.63 0.00 0.86
272 273 3.609644 GCTTCGACACGTGGGAGATATAG 60.610 52.174 21.57 11.01 0.00 1.31
273 274 1.878088 TCGACACGTGGGAGATATAGC 59.122 52.381 21.57 0.00 0.00 2.97
274 275 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
275 276 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
276 277 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
277 278 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
278 279 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
279 280 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
280 281 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
281 282 1.103803 GGGAGATATAGCCGCATCGA 58.896 55.000 0.00 0.00 0.00 3.59
282 283 1.066303 GGGAGATATAGCCGCATCGAG 59.934 57.143 0.00 0.00 0.00 4.04
283 284 1.066303 GGAGATATAGCCGCATCGAGG 59.934 57.143 0.00 0.00 0.00 4.63
284 285 2.017782 GAGATATAGCCGCATCGAGGA 58.982 52.381 0.00 0.00 0.00 3.71
285 286 1.746220 AGATATAGCCGCATCGAGGAC 59.254 52.381 0.00 0.00 0.00 3.85
286 287 0.452184 ATATAGCCGCATCGAGGACG 59.548 55.000 0.00 3.94 41.26 4.79
287 288 0.887836 TATAGCCGCATCGAGGACGT 60.888 55.000 0.00 0.00 40.69 4.34
288 289 1.735376 ATAGCCGCATCGAGGACGTT 61.735 55.000 0.00 0.00 40.69 3.99
289 290 1.096967 TAGCCGCATCGAGGACGTTA 61.097 55.000 0.00 0.00 40.69 3.18
290 291 2.228914 GCCGCATCGAGGACGTTAC 61.229 63.158 0.00 0.00 40.69 2.50
291 292 1.138036 CCGCATCGAGGACGTTACA 59.862 57.895 0.00 0.00 40.69 2.41
310 311 1.149401 GGCATGAACTAGGGAGGCC 59.851 63.158 0.00 0.00 0.00 5.19
314 315 1.133976 CATGAACTAGGGAGGCCTTGG 60.134 57.143 6.77 0.00 0.00 3.61
322 323 4.115199 GAGGCCTTGGCCGTGGAT 62.115 66.667 23.26 7.05 34.52 3.41
332 333 4.043168 CCGTGGATTATGGCCGTC 57.957 61.111 0.00 0.00 0.00 4.79
357 358 0.823356 TGAAGGCTTCCAAGTGTGCC 60.823 55.000 23.68 0.00 45.21 5.01
375 376 2.050077 GGTCGCTGGCTTTGTTGC 60.050 61.111 0.00 0.00 0.00 4.17
406 407 7.060421 AGAGAACTTGAGGGTTGTTCATTTTA 58.940 34.615 0.00 0.00 41.56 1.52
417 418 4.953940 TGTTCATTTTAAAGGCTGGCTT 57.046 36.364 11.07 11.07 0.00 4.35
428 429 2.281070 CTGGCTTGTGTGTCGGCT 60.281 61.111 0.00 0.00 0.00 5.52
429 430 2.280797 TGGCTTGTGTGTCGGCTC 60.281 61.111 0.00 0.00 0.00 4.70
442 443 2.653115 GGCTCCTGGCTTTGTTGC 59.347 61.111 0.00 0.00 41.46 4.17
443 444 1.905354 GGCTCCTGGCTTTGTTGCT 60.905 57.895 0.00 0.00 41.46 3.91
444 445 0.609131 GGCTCCTGGCTTTGTTGCTA 60.609 55.000 0.00 0.00 41.46 3.49
446 447 0.807496 CTCCTGGCTTTGTTGCTAGC 59.193 55.000 8.10 8.10 39.71 3.42
447 448 0.955428 TCCTGGCTTTGTTGCTAGCG 60.955 55.000 10.77 0.00 39.71 4.26
448 449 1.237285 CCTGGCTTTGTTGCTAGCGT 61.237 55.000 10.77 0.00 39.71 5.07
461 463 1.464997 GCTAGCGTGAAAACTTGAGGG 59.535 52.381 0.00 0.00 0.00 4.30
491 493 6.605194 TCATTTTGTAGGCTGGCATATGTTTA 59.395 34.615 4.29 0.00 0.00 2.01
492 494 7.287466 TCATTTTGTAGGCTGGCATATGTTTAT 59.713 33.333 4.29 0.00 0.00 1.40
497 499 2.154462 GCTGGCATATGTTTATCGGCT 58.846 47.619 4.29 0.00 0.00 5.52
502 504 3.304659 GGCATATGTTTATCGGCTGTTGG 60.305 47.826 4.29 0.00 0.00 3.77
507 509 2.227865 TGTTTATCGGCTGTTGGCTTTC 59.772 45.455 0.00 0.00 41.46 2.62
518 520 1.462731 TTGGCTTTCGTTGCTGGCAT 61.463 50.000 0.00 0.00 35.03 4.40
526 528 5.733091 GCTTTCGTTGCTGGCATGAATTATA 60.733 40.000 0.00 0.00 0.00 0.98
529 531 3.251729 CGTTGCTGGCATGAATTATAGCT 59.748 43.478 0.00 0.00 32.66 3.32
533 535 4.005650 GCTGGCATGAATTATAGCTGCTA 58.994 43.478 12.40 12.40 33.43 3.49
546 548 2.114616 AGCTGCTAGGCATGAACTACT 58.885 47.619 0.00 0.00 38.13 2.57
547 549 2.158986 AGCTGCTAGGCATGAACTACTG 60.159 50.000 0.00 0.00 38.13 2.74
549 551 2.169352 CTGCTAGGCATGAACTACTGGT 59.831 50.000 0.00 0.00 38.13 4.00
551 553 2.168521 GCTAGGCATGAACTACTGGTCA 59.831 50.000 0.00 0.00 0.00 4.02
595 597 1.081094 AAATTTTAGGCGACCGGACG 58.919 50.000 22.02 22.02 0.00 4.79
602 604 2.579787 GCGACCGGACGAGATGTG 60.580 66.667 29.83 0.00 35.09 3.21
605 607 1.645704 CGACCGGACGAGATGTGTCT 61.646 60.000 21.84 0.00 36.58 3.41
606 608 0.179161 GACCGGACGAGATGTGTCTG 60.179 60.000 9.46 0.00 41.42 3.51
609 611 2.161486 GGACGAGATGTGTCTGCGC 61.161 63.158 0.00 0.00 36.58 6.09
614 616 1.006220 AGATGTGTCTGCGCGTTGA 60.006 52.632 8.43 3.17 32.13 3.18
626 628 4.170062 CGTTGAGCGCATGGCCAG 62.170 66.667 13.05 4.54 45.17 4.85
627 629 4.487412 GTTGAGCGCATGGCCAGC 62.487 66.667 13.05 14.22 45.17 4.85
635 637 2.832931 GCATGGCCAGCGTATCTAG 58.167 57.895 13.05 0.00 0.00 2.43
636 638 0.318441 GCATGGCCAGCGTATCTAGA 59.682 55.000 13.05 0.00 0.00 2.43
644 646 3.877508 GCCAGCGTATCTAGAAAAATGGT 59.122 43.478 0.00 0.00 0.00 3.55
649 651 4.208666 GCGTATCTAGAAAAATGGTCGGAC 59.791 45.833 0.00 0.00 0.00 4.79
652 654 5.587388 ATCTAGAAAAATGGTCGGACGTA 57.413 39.130 0.00 0.00 0.00 3.57
698 700 6.163476 GGACAAAATTGGGATAAAACAGACC 58.837 40.000 0.00 0.00 0.00 3.85
702 704 3.343941 TTGGGATAAAACAGACCTCCG 57.656 47.619 0.00 0.00 0.00 4.63
707 709 3.439129 GGATAAAACAGACCTCCGTTTGG 59.561 47.826 0.00 0.00 35.57 3.28
727 735 1.339727 GGGCGTTGGAGTTGGTCTTAT 60.340 52.381 0.00 0.00 0.00 1.73
730 738 4.196971 GGCGTTGGAGTTGGTCTTATATT 58.803 43.478 0.00 0.00 0.00 1.28
731 739 4.035208 GGCGTTGGAGTTGGTCTTATATTG 59.965 45.833 0.00 0.00 0.00 1.90
747 755 0.259938 ATTGTGGGCTGGAATCCTCC 59.740 55.000 0.00 1.57 42.81 4.30
750 758 4.918201 GGGCTGGAATCCTCCGCG 62.918 72.222 0.00 0.00 45.85 6.46
753 822 2.109799 CTGGAATCCTCCGCGCAT 59.890 61.111 8.75 0.00 45.85 4.73
819 888 3.470888 CCCTTCATCCGTCGGCCT 61.471 66.667 6.34 0.00 0.00 5.19
918 987 3.769189 TCACCTCCACCTTCATACCTA 57.231 47.619 0.00 0.00 0.00 3.08
919 988 4.069312 TCACCTCCACCTTCATACCTAA 57.931 45.455 0.00 0.00 0.00 2.69
920 989 4.030913 TCACCTCCACCTTCATACCTAAG 58.969 47.826 0.00 0.00 0.00 2.18
921 990 2.772515 ACCTCCACCTTCATACCTAAGC 59.227 50.000 0.00 0.00 0.00 3.09
922 991 2.771943 CCTCCACCTTCATACCTAAGCA 59.228 50.000 0.00 0.00 0.00 3.91
923 992 3.432326 CCTCCACCTTCATACCTAAGCAC 60.432 52.174 0.00 0.00 0.00 4.40
924 993 3.178046 TCCACCTTCATACCTAAGCACA 58.822 45.455 0.00 0.00 0.00 4.57
925 994 3.055385 TCCACCTTCATACCTAAGCACAC 60.055 47.826 0.00 0.00 0.00 3.82
926 995 3.270877 CACCTTCATACCTAAGCACACC 58.729 50.000 0.00 0.00 0.00 4.16
927 996 3.055094 CACCTTCATACCTAAGCACACCT 60.055 47.826 0.00 0.00 0.00 4.00
942 1011 2.094182 CACACCTTAGCCTTCTCGCTAA 60.094 50.000 3.27 3.27 46.50 3.09
1058 1140 2.264794 CTGCTCGCTTTACCCCGT 59.735 61.111 0.00 0.00 0.00 5.28
1076 1158 0.105039 GTCCCGAACCAGCATAGGAG 59.895 60.000 0.00 0.00 0.00 3.69
1083 1165 2.506061 CCAGCATAGGAGAGGCGCT 61.506 63.158 7.64 0.00 40.72 5.92
1209 1291 4.170723 GCGGTGATAGATAGCGGC 57.829 61.111 0.00 0.00 39.24 6.53
1212 1294 1.446272 GGTGATAGATAGCGGCGCC 60.446 63.158 30.40 19.07 0.00 6.53
1354 1436 1.905512 ACCGATAAGCCAGGTGACC 59.094 57.895 0.00 0.00 36.81 4.02
1361 1444 1.843368 AAGCCAGGTGACCATGATTG 58.157 50.000 3.63 0.00 0.00 2.67
1363 1446 0.682209 GCCAGGTGACCATGATTGCT 60.682 55.000 3.63 0.00 0.00 3.91
1393 1476 2.808202 GCAGCTCTTTCTTGGACTGTGA 60.808 50.000 0.00 0.00 0.00 3.58
1397 1480 3.397482 CTCTTTCTTGGACTGTGAGGTG 58.603 50.000 0.00 0.00 0.00 4.00
1413 1496 1.995542 AGGTGGATTGGTGGTTCTGAT 59.004 47.619 0.00 0.00 0.00 2.90
1417 1500 2.094675 GGATTGGTGGTTCTGATGTGG 58.905 52.381 0.00 0.00 0.00 4.17
1426 1515 1.398390 GTTCTGATGTGGCGGAATGTC 59.602 52.381 0.00 0.00 35.75 3.06
1484 1573 1.798283 CATTCCCGTGGTCGTGTTTA 58.202 50.000 0.00 0.00 35.01 2.01
1555 1644 3.963129 TGTTCTGAGGTTGGTTCTGTTT 58.037 40.909 0.00 0.00 0.00 2.83
1568 1657 5.485620 TGGTTCTGTTTGATCTCATCTCAG 58.514 41.667 0.00 0.00 0.00 3.35
1580 1669 3.265221 TCTCATCTCAGGGCTGTGATTTT 59.735 43.478 0.00 0.00 40.54 1.82
1584 1673 3.831323 TCTCAGGGCTGTGATTTTTCAA 58.169 40.909 0.00 0.00 0.00 2.69
1588 1677 4.037923 TCAGGGCTGTGATTTTTCAACTTC 59.962 41.667 0.00 0.00 0.00 3.01
1589 1678 3.004734 AGGGCTGTGATTTTTCAACTTCG 59.995 43.478 0.00 0.00 0.00 3.79
1590 1679 3.243401 GGGCTGTGATTTTTCAACTTCGT 60.243 43.478 0.00 0.00 0.00 3.85
1591 1680 4.023536 GGGCTGTGATTTTTCAACTTCGTA 60.024 41.667 0.00 0.00 0.00 3.43
1593 1682 5.277828 GGCTGTGATTTTTCAACTTCGTACT 60.278 40.000 0.00 0.00 0.00 2.73
1594 1683 5.621228 GCTGTGATTTTTCAACTTCGTACTG 59.379 40.000 0.00 0.00 0.00 2.74
1595 1684 5.507077 TGTGATTTTTCAACTTCGTACTGC 58.493 37.500 0.00 0.00 0.00 4.40
1596 1685 5.065346 TGTGATTTTTCAACTTCGTACTGCA 59.935 36.000 0.00 0.00 0.00 4.41
1597 1686 5.621228 GTGATTTTTCAACTTCGTACTGCAG 59.379 40.000 13.48 13.48 0.00 4.41
1598 1687 5.295787 TGATTTTTCAACTTCGTACTGCAGT 59.704 36.000 25.12 25.12 0.00 4.40
1599 1688 5.554822 TTTTTCAACTTCGTACTGCAGTT 57.445 34.783 27.06 9.41 0.00 3.16
1600 1689 4.789095 TTTCAACTTCGTACTGCAGTTC 57.211 40.909 27.06 19.46 0.00 3.01
1601 1690 3.446310 TCAACTTCGTACTGCAGTTCA 57.554 42.857 27.06 4.60 0.00 3.18
1602 1691 3.990092 TCAACTTCGTACTGCAGTTCAT 58.010 40.909 27.06 1.44 0.00 2.57
1603 1692 4.377021 TCAACTTCGTACTGCAGTTCATT 58.623 39.130 27.06 8.85 0.00 2.57
1604 1693 5.534407 TCAACTTCGTACTGCAGTTCATTA 58.466 37.500 27.06 2.78 0.00 1.90
1605 1694 6.163476 TCAACTTCGTACTGCAGTTCATTAT 58.837 36.000 27.06 4.52 0.00 1.28
1606 1695 7.317390 TCAACTTCGTACTGCAGTTCATTATA 58.683 34.615 27.06 0.99 0.00 0.98
1607 1696 7.274904 TCAACTTCGTACTGCAGTTCATTATAC 59.725 37.037 27.06 14.03 0.00 1.47
1608 1697 6.864342 ACTTCGTACTGCAGTTCATTATACT 58.136 36.000 27.06 0.00 0.00 2.12
1609 1698 7.321153 ACTTCGTACTGCAGTTCATTATACTT 58.679 34.615 27.06 0.00 0.00 2.24
1610 1699 7.488471 ACTTCGTACTGCAGTTCATTATACTTC 59.512 37.037 27.06 0.00 0.00 3.01
1611 1700 7.096884 TCGTACTGCAGTTCATTATACTTCT 57.903 36.000 27.06 0.00 0.00 2.85
1612 1701 7.194278 TCGTACTGCAGTTCATTATACTTCTC 58.806 38.462 27.06 0.00 0.00 2.87
1613 1702 6.972901 CGTACTGCAGTTCATTATACTTCTCA 59.027 38.462 27.06 0.00 0.00 3.27
1614 1703 7.649705 CGTACTGCAGTTCATTATACTTCTCAT 59.350 37.037 27.06 0.00 0.00 2.90
1615 1704 9.319143 GTACTGCAGTTCATTATACTTCTCATT 57.681 33.333 27.06 0.00 0.00 2.57
1616 1705 8.430801 ACTGCAGTTCATTATACTTCTCATTC 57.569 34.615 15.25 0.00 0.00 2.67
1617 1706 8.263640 ACTGCAGTTCATTATACTTCTCATTCT 58.736 33.333 15.25 0.00 0.00 2.40
1618 1707 8.429493 TGCAGTTCATTATACTTCTCATTCTG 57.571 34.615 0.00 0.00 0.00 3.02
1619 1708 7.011763 TGCAGTTCATTATACTTCTCATTCTGC 59.988 37.037 0.00 0.00 41.19 4.26
1620 1709 7.011763 GCAGTTCATTATACTTCTCATTCTGCA 59.988 37.037 0.00 0.00 40.73 4.41
1621 1710 8.886719 CAGTTCATTATACTTCTCATTCTGCAA 58.113 33.333 0.00 0.00 0.00 4.08
1622 1711 9.107177 AGTTCATTATACTTCTCATTCTGCAAG 57.893 33.333 0.00 0.00 0.00 4.01
1623 1712 9.102757 GTTCATTATACTTCTCATTCTGCAAGA 57.897 33.333 0.00 0.00 44.68 3.02
1669 1759 4.713814 TCATGCTTCACTCCTAGTCAGATT 59.286 41.667 0.00 0.00 0.00 2.40
1671 1761 3.196469 TGCTTCACTCCTAGTCAGATTGG 59.804 47.826 0.00 0.00 0.00 3.16
1675 1765 2.028130 ACTCCTAGTCAGATTGGCTCG 58.972 52.381 0.00 0.00 32.64 5.03
1676 1766 1.339610 CTCCTAGTCAGATTGGCTCGG 59.660 57.143 0.00 0.00 36.39 4.63
1677 1767 1.115467 CCTAGTCAGATTGGCTCGGT 58.885 55.000 0.00 0.00 31.08 4.69
1679 1769 2.034812 CCTAGTCAGATTGGCTCGGTAC 59.965 54.545 0.00 0.00 31.08 3.34
1718 1838 6.494893 TGCATACATTTGTAACTTCTGACC 57.505 37.500 0.00 0.00 33.76 4.02
1740 1861 0.458025 GGACGGCTTTCTGTACCTCG 60.458 60.000 0.00 0.00 30.45 4.63
1744 1865 1.009829 GGCTTTCTGTACCTCGCATG 58.990 55.000 0.00 0.00 0.00 4.06
1751 1872 2.548480 TCTGTACCTCGCATGTCTATCG 59.452 50.000 0.00 0.00 0.00 2.92
1753 1874 2.032924 TGTACCTCGCATGTCTATCGTG 59.967 50.000 0.00 0.00 36.25 4.35
1760 1881 2.786027 CGCATGTCTATCGTGTTCTGAG 59.214 50.000 0.00 0.00 35.64 3.35
1772 1893 0.035630 GTTCTGAGGCTGCCAGTGAT 60.036 55.000 22.65 0.00 33.57 3.06
1777 1898 2.038689 CTGAGGCTGCCAGTGATCATAT 59.961 50.000 22.65 0.00 0.00 1.78
1785 1906 5.471116 GCTGCCAGTGATCATATGTTGATAA 59.529 40.000 0.00 0.00 45.29 1.75
1788 1970 8.102800 TGCCAGTGATCATATGTTGATAAATC 57.897 34.615 0.00 0.00 45.29 2.17
1829 2011 6.937436 TGCGATATGTTACTGTCTTCTAGA 57.063 37.500 0.00 0.00 0.00 2.43
1875 2057 5.904941 TCACAAATTTTGCTTCAGTGTGAT 58.095 33.333 9.04 0.00 39.05 3.06
1897 2079 1.363744 CTCTGACCGAAATCCACTGC 58.636 55.000 0.00 0.00 0.00 4.40
1899 2081 1.278985 TCTGACCGAAATCCACTGCAT 59.721 47.619 0.00 0.00 0.00 3.96
1901 2083 2.609459 CTGACCGAAATCCACTGCATAC 59.391 50.000 0.00 0.00 0.00 2.39
1902 2084 2.027653 TGACCGAAATCCACTGCATACA 60.028 45.455 0.00 0.00 0.00 2.29
1903 2085 3.006940 GACCGAAATCCACTGCATACAA 58.993 45.455 0.00 0.00 0.00 2.41
1904 2086 3.009723 ACCGAAATCCACTGCATACAAG 58.990 45.455 0.00 0.00 0.00 3.16
1905 2087 3.009723 CCGAAATCCACTGCATACAAGT 58.990 45.455 0.00 0.00 0.00 3.16
1906 2088 3.440173 CCGAAATCCACTGCATACAAGTT 59.560 43.478 0.00 0.00 0.00 2.66
1909 2091 5.920273 CGAAATCCACTGCATACAAGTTTTT 59.080 36.000 0.00 0.00 0.00 1.94
1911 2093 7.754924 CGAAATCCACTGCATACAAGTTTTTAT 59.245 33.333 0.00 0.00 0.00 1.40
1931 2113 8.588290 TTTTATATATTTGTGCCTCCAAGTGT 57.412 30.769 0.00 0.00 0.00 3.55
1942 2124 0.037590 TCCAAGTGTACCCATGTGCC 59.962 55.000 0.00 0.00 0.00 5.01
1950 2132 2.158534 TGTACCCATGTGCCTCAGTTTT 60.159 45.455 0.00 0.00 0.00 2.43
1965 2147 5.105351 CCTCAGTTTTCCCTTTCAAGTGTTT 60.105 40.000 0.00 0.00 0.00 2.83
1966 2148 5.961272 TCAGTTTTCCCTTTCAAGTGTTTC 58.039 37.500 0.00 0.00 0.00 2.78
1987 2169 8.075574 TGTTTCAGATTGTATTTCATGACACAC 58.924 33.333 0.00 0.00 0.00 3.82
1988 2170 7.742556 TTCAGATTGTATTTCATGACACACA 57.257 32.000 0.00 0.00 0.00 3.72
2232 2414 7.582667 ACTTTACATTTTGTCTAGCACCTTT 57.417 32.000 0.00 0.00 0.00 3.11
2254 2436 4.151121 TCAACATCTTGCATTTTCCTCCA 58.849 39.130 0.00 0.00 0.00 3.86
2271 2453 3.809832 CCTCCAATAAGTACTTGGCATCG 59.190 47.826 18.56 3.04 42.42 3.84
2272 2454 3.804036 TCCAATAAGTACTTGGCATCGG 58.196 45.455 18.56 9.59 42.42 4.18
2275 2457 2.596904 TAAGTACTTGGCATCGGCTC 57.403 50.000 18.56 0.00 40.87 4.70
2285 2467 1.199097 GGCATCGGCTCGAAAGAAAAA 59.801 47.619 1.44 0.00 39.99 1.94
2286 2468 2.159379 GGCATCGGCTCGAAAGAAAAAT 60.159 45.455 1.44 0.00 39.99 1.82
2341 2525 8.116753 GTGATAACTGATAAAGTCGATTTGTGG 58.883 37.037 0.00 0.00 38.56 4.17
2390 2574 7.781324 ACTGATTTCTTGTTTTCCATATGGT 57.219 32.000 21.28 0.00 36.34 3.55
2495 2685 2.035066 GCACTTTGTGGATGAGCAGTTT 59.965 45.455 0.00 0.00 33.64 2.66
2507 2697 1.876156 GAGCAGTTTGACACAGGGAAG 59.124 52.381 0.00 0.00 0.00 3.46
2599 2789 2.054363 CGAGGTAGCATCTTATGTGCG 58.946 52.381 0.00 0.00 46.86 5.34
2723 3033 3.753272 CCTTGTGTGAGGATCGAATTGTT 59.247 43.478 0.00 0.00 39.25 2.83
2862 3172 2.203084 TGCCAGTTTTCGCCACGA 60.203 55.556 0.00 0.00 0.00 4.35
2865 3175 1.278637 CCAGTTTTCGCCACGACAC 59.721 57.895 0.00 0.00 34.89 3.67
3039 3355 1.207329 GGTCCCAGAAGCGTAATGTCT 59.793 52.381 0.00 0.00 0.00 3.41
3040 3356 2.429610 GGTCCCAGAAGCGTAATGTCTA 59.570 50.000 0.00 0.00 0.00 2.59
3042 3358 2.429610 TCCCAGAAGCGTAATGTCTACC 59.570 50.000 0.00 0.00 0.00 3.18
3044 3360 3.118738 CCCAGAAGCGTAATGTCTACCTT 60.119 47.826 0.00 0.00 0.00 3.50
3045 3361 3.865745 CCAGAAGCGTAATGTCTACCTTG 59.134 47.826 0.00 0.00 0.00 3.61
3046 3362 3.307242 CAGAAGCGTAATGTCTACCTTGC 59.693 47.826 0.00 0.00 0.00 4.01
3047 3363 3.056107 AGAAGCGTAATGTCTACCTTGCA 60.056 43.478 0.00 0.00 0.00 4.08
3048 3364 3.543680 AGCGTAATGTCTACCTTGCAT 57.456 42.857 0.00 0.00 0.00 3.96
3128 3444 6.826231 TGAACAAAGTTTCAGTGAATAGTCCA 59.174 34.615 6.36 0.00 31.68 4.02
3163 3479 5.030147 ACCCTATGTCTAAAGATGTCACCA 58.970 41.667 0.00 0.00 0.00 4.17
3196 4959 1.864029 GCTGTTTTCCTTTGTGGCGTC 60.864 52.381 0.00 0.00 35.26 5.19
3197 4960 0.378962 TGTTTTCCTTTGTGGCGTCG 59.621 50.000 0.00 0.00 35.26 5.12
3198 4961 0.658897 GTTTTCCTTTGTGGCGTCGA 59.341 50.000 0.00 0.00 35.26 4.20
3199 4962 1.265905 GTTTTCCTTTGTGGCGTCGAT 59.734 47.619 0.00 0.00 35.26 3.59
3200 4963 1.600023 TTTCCTTTGTGGCGTCGATT 58.400 45.000 0.00 0.00 35.26 3.34
3201 4964 1.600023 TTCCTTTGTGGCGTCGATTT 58.400 45.000 0.00 0.00 35.26 2.17
3202 4965 0.871722 TCCTTTGTGGCGTCGATTTG 59.128 50.000 0.00 0.00 35.26 2.32
3203 4966 0.591170 CCTTTGTGGCGTCGATTTGT 59.409 50.000 0.00 0.00 0.00 2.83
3204 4967 1.001815 CCTTTGTGGCGTCGATTTGTT 60.002 47.619 0.00 0.00 0.00 2.83
3205 4968 2.542824 CCTTTGTGGCGTCGATTTGTTT 60.543 45.455 0.00 0.00 0.00 2.83
3206 4969 2.392933 TTGTGGCGTCGATTTGTTTC 57.607 45.000 0.00 0.00 0.00 2.78
3207 4970 1.588674 TGTGGCGTCGATTTGTTTCT 58.411 45.000 0.00 0.00 0.00 2.52
3208 4971 2.756829 TGTGGCGTCGATTTGTTTCTA 58.243 42.857 0.00 0.00 0.00 2.10
3238 5001 7.233757 ACACTCCTTAGTTTCAGTGAATAGTCT 59.766 37.037 6.36 6.10 38.90 3.24
3334 5097 6.015434 TGCTACTTGTTGAGAGATGTCACTAA 60.015 38.462 0.00 0.00 0.00 2.24
3344 5107 8.996651 TGAGAGATGTCACTAATGAACCTATA 57.003 34.615 0.00 0.00 36.31 1.31
3362 5125 4.825085 CCTATAGCCTCCGGATCTATTCTC 59.175 50.000 23.30 2.69 0.00 2.87
3424 5188 4.819630 TGCCGTTCCACTTTATCATTATCC 59.180 41.667 0.00 0.00 0.00 2.59
3465 5229 9.297037 AGTTTTACCTTGTAATAGCAAGACAAT 57.703 29.630 7.32 0.00 46.34 2.71
3477 5241 2.035066 GCAAGACAATGGCTTGACAACT 59.965 45.455 31.11 0.00 44.16 3.16
3483 5247 3.567164 ACAATGGCTTGACAACTCTCTTG 59.433 43.478 4.13 0.00 36.20 3.02
3515 5279 6.183360 TGGGGACAAGTTCTGTTTATGTTTTC 60.183 38.462 0.00 0.00 38.84 2.29
3521 5285 8.952278 ACAAGTTCTGTTTATGTTTTCTGTGTA 58.048 29.630 0.00 0.00 32.99 2.90
3534 5298 2.816689 TCTGTGTAGGTGTTGTTGACG 58.183 47.619 0.00 0.00 0.00 4.35
3541 5305 2.273557 AGGTGTTGTTGACGTGTGTAC 58.726 47.619 0.00 0.00 0.00 2.90
3562 5326 9.747293 GTGTACTTTAGAATATCCTACTGGTTC 57.253 37.037 0.00 0.00 34.23 3.62
3570 5334 8.480133 AGAATATCCTACTGGTTCGATAAACT 57.520 34.615 0.00 0.00 38.02 2.66
3583 5347 7.080099 GGTTCGATAAACTTTGGTTCTTAACC 58.920 38.462 1.75 1.75 43.62 2.85
3604 5368 4.051237 CCAAGGAAAAACTTGCTACTTGC 58.949 43.478 0.00 0.00 44.98 4.01
3644 5408 1.668419 GGGAATCCCAACGACTCATG 58.332 55.000 14.67 0.00 44.65 3.07
3645 5409 1.065418 GGGAATCCCAACGACTCATGT 60.065 52.381 14.67 0.00 44.65 3.21
3666 5430 1.268283 GGAGTAGCAGCCACCTCCTT 61.268 60.000 13.10 0.00 40.30 3.36
3670 5434 0.252239 TAGCAGCCACCTCCTTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
3678 5442 2.630158 CACCTCCTTCTCAGATTGCTG 58.370 52.381 0.00 0.00 43.67 4.41
3684 5448 4.293494 TCCTTCTCAGATTGCTGGATACT 58.707 43.478 0.00 0.00 42.53 2.12
3690 5454 4.218312 TCAGATTGCTGGATACTGAGCTA 58.782 43.478 0.00 0.00 42.53 3.32
3709 5473 0.411058 AGAGGGCCTTGGCATTCTTT 59.589 50.000 7.89 0.78 0.00 2.52
3723 5487 1.521450 TTCTTTCGACGGAGCCGACT 61.521 55.000 16.83 0.00 42.83 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.856801 CCCGATCGCCCCAACTGG 62.857 72.222 10.32 0.00 0.00 4.00
20 21 4.856801 CCCCGATCGCCCCAACTG 62.857 72.222 10.32 0.00 0.00 3.16
22 23 4.851179 GACCCCGATCGCCCCAAC 62.851 72.222 10.32 0.00 0.00 3.77
25 26 3.793888 AAAGACCCCGATCGCCCC 61.794 66.667 10.32 0.00 0.00 5.80
26 27 2.513897 CAAAGACCCCGATCGCCC 60.514 66.667 10.32 0.00 0.00 6.13
27 28 1.814169 GACAAAGACCCCGATCGCC 60.814 63.158 10.32 0.00 0.00 5.54
28 29 2.165301 CGACAAAGACCCCGATCGC 61.165 63.158 10.32 0.00 0.00 4.58
29 30 2.165301 GCGACAAAGACCCCGATCG 61.165 63.158 8.51 8.51 0.00 3.69
30 31 0.462047 ATGCGACAAAGACCCCGATC 60.462 55.000 0.00 0.00 0.00 3.69
31 32 0.035439 AATGCGACAAAGACCCCGAT 60.035 50.000 0.00 0.00 0.00 4.18
32 33 0.250553 AAATGCGACAAAGACCCCGA 60.251 50.000 0.00 0.00 0.00 5.14
33 34 0.109781 CAAATGCGACAAAGACCCCG 60.110 55.000 0.00 0.00 0.00 5.73
34 35 0.243636 CCAAATGCGACAAAGACCCC 59.756 55.000 0.00 0.00 0.00 4.95
35 36 0.243636 CCCAAATGCGACAAAGACCC 59.756 55.000 0.00 0.00 0.00 4.46
36 37 0.243636 CCCCAAATGCGACAAAGACC 59.756 55.000 0.00 0.00 0.00 3.85
37 38 0.243636 CCCCCAAATGCGACAAAGAC 59.756 55.000 0.00 0.00 0.00 3.01
38 39 0.178975 ACCCCCAAATGCGACAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
39 40 0.678950 AACCCCCAAATGCGACAAAG 59.321 50.000 0.00 0.00 0.00 2.77
40 41 0.390860 CAACCCCCAAATGCGACAAA 59.609 50.000 0.00 0.00 0.00 2.83
41 42 0.468214 TCAACCCCCAAATGCGACAA 60.468 50.000 0.00 0.00 0.00 3.18
42 43 0.251564 ATCAACCCCCAAATGCGACA 60.252 50.000 0.00 0.00 0.00 4.35
43 44 1.757682 TATCAACCCCCAAATGCGAC 58.242 50.000 0.00 0.00 0.00 5.19
44 45 2.746279 ATATCAACCCCCAAATGCGA 57.254 45.000 0.00 0.00 0.00 5.10
45 46 3.817709 AAATATCAACCCCCAAATGCG 57.182 42.857 0.00 0.00 0.00 4.73
46 47 7.013178 CCAAAATAAATATCAACCCCCAAATGC 59.987 37.037 0.00 0.00 0.00 3.56
47 48 8.052141 ACCAAAATAAATATCAACCCCCAAATG 58.948 33.333 0.00 0.00 0.00 2.32
48 49 8.168905 ACCAAAATAAATATCAACCCCCAAAT 57.831 30.769 0.00 0.00 0.00 2.32
49 50 7.575499 ACCAAAATAAATATCAACCCCCAAA 57.425 32.000 0.00 0.00 0.00 3.28
50 51 7.125963 GGTACCAAAATAAATATCAACCCCCAA 59.874 37.037 7.15 0.00 0.00 4.12
51 52 6.612049 GGTACCAAAATAAATATCAACCCCCA 59.388 38.462 7.15 0.00 0.00 4.96
52 53 6.239092 CGGTACCAAAATAAATATCAACCCCC 60.239 42.308 13.54 0.00 0.00 5.40
53 54 6.321945 ACGGTACCAAAATAAATATCAACCCC 59.678 38.462 13.54 0.00 0.00 4.95
54 55 7.337480 ACGGTACCAAAATAAATATCAACCC 57.663 36.000 13.54 0.00 0.00 4.11
55 56 9.112725 ACTACGGTACCAAAATAAATATCAACC 57.887 33.333 13.54 0.00 0.00 3.77
57 58 9.887629 TGACTACGGTACCAAAATAAATATCAA 57.112 29.630 13.54 0.00 0.00 2.57
58 59 9.537192 CTGACTACGGTACCAAAATAAATATCA 57.463 33.333 13.54 0.78 0.00 2.15
59 60 9.754382 TCTGACTACGGTACCAAAATAAATATC 57.246 33.333 13.54 0.00 0.00 1.63
60 61 9.538508 GTCTGACTACGGTACCAAAATAAATAT 57.461 33.333 13.54 0.00 0.00 1.28
61 62 7.981225 GGTCTGACTACGGTACCAAAATAAATA 59.019 37.037 13.54 0.00 0.00 1.40
62 63 6.820152 GGTCTGACTACGGTACCAAAATAAAT 59.180 38.462 13.54 0.00 0.00 1.40
63 64 6.165577 GGTCTGACTACGGTACCAAAATAAA 58.834 40.000 13.54 0.00 0.00 1.40
64 65 5.245751 TGGTCTGACTACGGTACCAAAATAA 59.754 40.000 13.54 0.00 37.29 1.40
65 66 4.771577 TGGTCTGACTACGGTACCAAAATA 59.228 41.667 13.54 0.00 37.29 1.40
66 67 3.579586 TGGTCTGACTACGGTACCAAAAT 59.420 43.478 13.54 0.00 37.29 1.82
67 68 2.964464 TGGTCTGACTACGGTACCAAAA 59.036 45.455 13.54 0.00 37.29 2.44
68 69 2.596346 TGGTCTGACTACGGTACCAAA 58.404 47.619 13.54 0.00 37.29 3.28
69 70 2.291209 TGGTCTGACTACGGTACCAA 57.709 50.000 13.54 0.00 37.29 3.67
70 71 2.097036 CATGGTCTGACTACGGTACCA 58.903 52.381 13.54 1.01 43.93 3.25
71 72 2.372264 TCATGGTCTGACTACGGTACC 58.628 52.381 7.85 0.16 0.00 3.34
72 73 4.142227 ACATTCATGGTCTGACTACGGTAC 60.142 45.833 7.85 0.00 32.17 3.34
73 74 4.021229 ACATTCATGGTCTGACTACGGTA 58.979 43.478 7.85 0.00 32.17 4.02
74 75 2.832129 ACATTCATGGTCTGACTACGGT 59.168 45.455 7.85 0.00 32.17 4.83
75 76 3.526931 ACATTCATGGTCTGACTACGG 57.473 47.619 7.85 0.00 32.17 4.02
76 77 5.463392 CCAATACATTCATGGTCTGACTACG 59.537 44.000 7.85 0.00 32.17 3.51
77 78 6.582636 TCCAATACATTCATGGTCTGACTAC 58.417 40.000 7.85 0.00 35.66 2.73
78 79 6.806668 TCCAATACATTCATGGTCTGACTA 57.193 37.500 7.85 1.29 35.66 2.59
79 80 5.698741 TCCAATACATTCATGGTCTGACT 57.301 39.130 7.85 0.00 35.66 3.41
80 81 6.057533 TCATCCAATACATTCATGGTCTGAC 58.942 40.000 0.00 0.00 35.66 3.51
81 82 6.251255 TCATCCAATACATTCATGGTCTGA 57.749 37.500 0.00 0.00 35.66 3.27
82 83 6.947644 TTCATCCAATACATTCATGGTCTG 57.052 37.500 0.00 0.00 35.66 3.51
83 84 7.064866 ACATTCATCCAATACATTCATGGTCT 58.935 34.615 0.00 0.00 35.66 3.85
84 85 7.281040 ACATTCATCCAATACATTCATGGTC 57.719 36.000 0.00 0.00 35.66 4.02
85 86 8.765488 TTACATTCATCCAATACATTCATGGT 57.235 30.769 0.00 0.00 35.66 3.55
86 87 9.634163 CATTACATTCATCCAATACATTCATGG 57.366 33.333 0.00 0.00 35.49 3.66
89 90 9.631257 AGTCATTACATTCATCCAATACATTCA 57.369 29.630 0.00 0.00 0.00 2.57
109 110 9.357652 GTCACACAAATGCATAAATAAGTCATT 57.642 29.630 0.00 0.00 0.00 2.57
110 111 7.697710 CGTCACACAAATGCATAAATAAGTCAT 59.302 33.333 0.00 0.00 0.00 3.06
111 112 7.020602 CGTCACACAAATGCATAAATAAGTCA 58.979 34.615 0.00 0.00 0.00 3.41
112 113 7.007367 CACGTCACACAAATGCATAAATAAGTC 59.993 37.037 0.00 0.00 0.00 3.01
113 114 6.801377 CACGTCACACAAATGCATAAATAAGT 59.199 34.615 0.00 0.00 0.00 2.24
114 115 7.007367 GTCACGTCACACAAATGCATAAATAAG 59.993 37.037 0.00 0.00 0.00 1.73
115 116 6.799441 GTCACGTCACACAAATGCATAAATAA 59.201 34.615 0.00 0.00 0.00 1.40
116 117 6.310960 GTCACGTCACACAAATGCATAAATA 58.689 36.000 0.00 0.00 0.00 1.40
117 118 5.153513 GTCACGTCACACAAATGCATAAAT 58.846 37.500 0.00 0.00 0.00 1.40
118 119 4.532276 GTCACGTCACACAAATGCATAAA 58.468 39.130 0.00 0.00 0.00 1.40
119 120 3.363477 CGTCACGTCACACAAATGCATAA 60.363 43.478 0.00 0.00 0.00 1.90
120 121 2.156697 CGTCACGTCACACAAATGCATA 59.843 45.455 0.00 0.00 0.00 3.14
121 122 1.069973 CGTCACGTCACACAAATGCAT 60.070 47.619 0.00 0.00 0.00 3.96
122 123 0.303191 CGTCACGTCACACAAATGCA 59.697 50.000 0.00 0.00 0.00 3.96
123 124 0.579630 TCGTCACGTCACACAAATGC 59.420 50.000 0.00 0.00 0.00 3.56
124 125 1.858458 ACTCGTCACGTCACACAAATG 59.142 47.619 0.00 0.00 0.00 2.32
125 126 1.858458 CACTCGTCACGTCACACAAAT 59.142 47.619 0.00 0.00 0.00 2.32
126 127 1.273688 CACTCGTCACGTCACACAAA 58.726 50.000 0.00 0.00 0.00 2.83
127 128 0.171679 ACACTCGTCACGTCACACAA 59.828 50.000 0.00 0.00 0.00 3.33
128 129 1.015868 TACACTCGTCACGTCACACA 58.984 50.000 0.00 0.00 0.00 3.72
129 130 2.041966 CTTACACTCGTCACGTCACAC 58.958 52.381 0.00 0.00 0.00 3.82
130 131 1.672363 ACTTACACTCGTCACGTCACA 59.328 47.619 0.00 0.00 0.00 3.58
131 132 2.286595 TGACTTACACTCGTCACGTCAC 60.287 50.000 0.00 0.00 35.40 3.67
132 133 1.941975 TGACTTACACTCGTCACGTCA 59.058 47.619 0.00 0.00 35.40 4.35
133 134 2.675767 TGACTTACACTCGTCACGTC 57.324 50.000 0.00 0.00 35.40 4.34
134 135 2.357009 AGTTGACTTACACTCGTCACGT 59.643 45.455 0.00 0.00 39.64 4.49
135 136 2.996155 AGTTGACTTACACTCGTCACG 58.004 47.619 0.00 0.00 39.64 4.35
136 137 5.458891 ACATAGTTGACTTACACTCGTCAC 58.541 41.667 0.00 0.00 39.64 3.67
137 138 5.700722 ACATAGTTGACTTACACTCGTCA 57.299 39.130 0.00 0.00 38.30 4.35
138 139 6.605849 TGTACATAGTTGACTTACACTCGTC 58.394 40.000 0.00 0.00 0.00 4.20
139 140 6.564709 TGTACATAGTTGACTTACACTCGT 57.435 37.500 0.00 0.00 0.00 4.18
140 141 8.462143 AAATGTACATAGTTGACTTACACTCG 57.538 34.615 9.21 0.00 0.00 4.18
141 142 8.870879 GGAAATGTACATAGTTGACTTACACTC 58.129 37.037 9.21 0.00 0.00 3.51
142 143 7.822822 GGGAAATGTACATAGTTGACTTACACT 59.177 37.037 9.21 0.00 0.00 3.55
143 144 7.065443 GGGGAAATGTACATAGTTGACTTACAC 59.935 40.741 9.21 0.00 0.00 2.90
144 145 7.037873 AGGGGAAATGTACATAGTTGACTTACA 60.038 37.037 9.21 0.00 0.00 2.41
145 146 7.336396 AGGGGAAATGTACATAGTTGACTTAC 58.664 38.462 9.21 0.00 0.00 2.34
146 147 7.504926 AGGGGAAATGTACATAGTTGACTTA 57.495 36.000 9.21 0.00 0.00 2.24
147 148 6.388619 AGGGGAAATGTACATAGTTGACTT 57.611 37.500 9.21 0.00 0.00 3.01
148 149 6.388619 AAGGGGAAATGTACATAGTTGACT 57.611 37.500 9.21 1.21 0.00 3.41
149 150 8.747538 ATAAAGGGGAAATGTACATAGTTGAC 57.252 34.615 9.21 0.00 0.00 3.18
150 151 9.762381 AAATAAAGGGGAAATGTACATAGTTGA 57.238 29.630 9.21 0.00 0.00 3.18
173 174 9.897744 CTTCGCAATCAACCAATGTATATAAAT 57.102 29.630 0.00 0.00 0.00 1.40
174 175 9.114952 TCTTCGCAATCAACCAATGTATATAAA 57.885 29.630 0.00 0.00 0.00 1.40
175 176 8.669946 TCTTCGCAATCAACCAATGTATATAA 57.330 30.769 0.00 0.00 0.00 0.98
176 177 8.846943 ATCTTCGCAATCAACCAATGTATATA 57.153 30.769 0.00 0.00 0.00 0.86
177 178 7.750229 ATCTTCGCAATCAACCAATGTATAT 57.250 32.000 0.00 0.00 0.00 0.86
178 179 7.566760 AATCTTCGCAATCAACCAATGTATA 57.433 32.000 0.00 0.00 0.00 1.47
179 180 6.455360 AATCTTCGCAATCAACCAATGTAT 57.545 33.333 0.00 0.00 0.00 2.29
180 181 5.895636 AATCTTCGCAATCAACCAATGTA 57.104 34.783 0.00 0.00 0.00 2.29
181 182 4.789012 AATCTTCGCAATCAACCAATGT 57.211 36.364 0.00 0.00 0.00 2.71
182 183 5.036737 GGTAATCTTCGCAATCAACCAATG 58.963 41.667 0.00 0.00 0.00 2.82
183 184 4.949856 AGGTAATCTTCGCAATCAACCAAT 59.050 37.500 0.00 0.00 0.00 3.16
184 185 4.331968 AGGTAATCTTCGCAATCAACCAA 58.668 39.130 0.00 0.00 0.00 3.67
185 186 3.938963 GAGGTAATCTTCGCAATCAACCA 59.061 43.478 0.00 0.00 0.00 3.67
186 187 3.938963 TGAGGTAATCTTCGCAATCAACC 59.061 43.478 0.00 0.00 0.00 3.77
187 188 4.631813 AGTGAGGTAATCTTCGCAATCAAC 59.368 41.667 0.00 0.00 33.52 3.18
188 189 4.832248 AGTGAGGTAATCTTCGCAATCAA 58.168 39.130 0.00 0.00 33.52 2.57
189 190 4.471904 AGTGAGGTAATCTTCGCAATCA 57.528 40.909 0.00 0.00 33.52 2.57
190 191 4.494855 GCAAGTGAGGTAATCTTCGCAATC 60.495 45.833 0.00 0.00 33.52 2.67
191 192 3.375299 GCAAGTGAGGTAATCTTCGCAAT 59.625 43.478 0.00 0.00 33.52 3.56
192 193 2.742053 GCAAGTGAGGTAATCTTCGCAA 59.258 45.455 0.00 0.00 33.52 4.85
193 194 2.346803 GCAAGTGAGGTAATCTTCGCA 58.653 47.619 0.00 0.00 33.52 5.10
194 195 1.324736 CGCAAGTGAGGTAATCTTCGC 59.675 52.381 0.00 0.00 0.00 4.70
195 196 2.599082 GTCGCAAGTGAGGTAATCTTCG 59.401 50.000 0.00 0.00 39.48 3.79
196 197 3.585862 TGTCGCAAGTGAGGTAATCTTC 58.414 45.455 0.00 0.00 39.48 2.87
197 198 3.678056 TGTCGCAAGTGAGGTAATCTT 57.322 42.857 0.00 0.00 39.48 2.40
198 199 3.895232 ATGTCGCAAGTGAGGTAATCT 57.105 42.857 0.00 0.00 39.48 2.40
199 200 3.485877 GCAATGTCGCAAGTGAGGTAATC 60.486 47.826 0.00 0.00 39.48 1.75
200 201 2.420022 GCAATGTCGCAAGTGAGGTAAT 59.580 45.455 0.00 0.00 39.48 1.89
201 202 1.804151 GCAATGTCGCAAGTGAGGTAA 59.196 47.619 0.00 0.00 39.48 2.85
202 203 1.001974 AGCAATGTCGCAAGTGAGGTA 59.998 47.619 0.00 0.00 39.48 3.08
203 204 0.250467 AGCAATGTCGCAAGTGAGGT 60.250 50.000 0.00 0.00 39.48 3.85
204 205 0.877071 AAGCAATGTCGCAAGTGAGG 59.123 50.000 0.00 0.00 39.48 3.86
205 206 2.031769 TGAAAGCAATGTCGCAAGTGAG 60.032 45.455 0.00 0.00 39.48 3.51
206 207 1.946081 TGAAAGCAATGTCGCAAGTGA 59.054 42.857 0.00 0.00 39.48 3.41
207 208 2.404265 TGAAAGCAATGTCGCAAGTG 57.596 45.000 0.00 0.00 39.48 3.16
208 209 3.648339 ATTGAAAGCAATGTCGCAAGT 57.352 38.095 0.00 0.00 42.91 3.16
217 218 3.189285 GCATAACCGCATTGAAAGCAAT 58.811 40.909 0.00 0.00 45.33 3.56
218 219 2.605030 GCATAACCGCATTGAAAGCAA 58.395 42.857 0.00 0.00 38.60 3.91
219 220 1.135141 GGCATAACCGCATTGAAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
220 221 1.134946 AGGCATAACCGCATTGAAAGC 59.865 47.619 0.00 0.00 46.52 3.51
221 222 2.684881 AGAGGCATAACCGCATTGAAAG 59.315 45.455 0.00 0.00 46.52 2.62
222 223 2.722094 AGAGGCATAACCGCATTGAAA 58.278 42.857 0.00 0.00 46.52 2.69
223 224 2.418368 AGAGGCATAACCGCATTGAA 57.582 45.000 0.00 0.00 46.52 2.69
224 225 3.118408 ACTTAGAGGCATAACCGCATTGA 60.118 43.478 0.00 0.00 46.52 2.57
225 226 3.206150 ACTTAGAGGCATAACCGCATTG 58.794 45.455 0.00 0.00 46.52 2.82
226 227 3.467803 GACTTAGAGGCATAACCGCATT 58.532 45.455 0.00 0.00 46.52 3.56
227 228 2.545952 CGACTTAGAGGCATAACCGCAT 60.546 50.000 0.00 0.00 46.52 4.73
228 229 1.202371 CGACTTAGAGGCATAACCGCA 60.202 52.381 0.00 0.00 46.52 5.69
229 230 1.202382 ACGACTTAGAGGCATAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
230 231 2.460918 CACGACTTAGAGGCATAACCG 58.539 52.381 0.00 0.00 46.52 4.44
231 232 2.159085 AGCACGACTTAGAGGCATAACC 60.159 50.000 0.00 0.00 39.61 2.85
232 233 3.166489 AGCACGACTTAGAGGCATAAC 57.834 47.619 0.00 0.00 0.00 1.89
233 234 3.733988 CGAAGCACGACTTAGAGGCATAA 60.734 47.826 0.00 0.00 45.77 1.90
234 235 2.223502 CGAAGCACGACTTAGAGGCATA 60.224 50.000 0.00 0.00 45.77 3.14
235 236 1.469940 CGAAGCACGACTTAGAGGCAT 60.470 52.381 0.00 0.00 45.77 4.40
236 237 0.109272 CGAAGCACGACTTAGAGGCA 60.109 55.000 0.00 0.00 45.77 4.75
237 238 0.170561 TCGAAGCACGACTTAGAGGC 59.829 55.000 2.09 0.00 46.45 4.70
248 249 2.022129 CTCCCACGTGTCGAAGCAC 61.022 63.158 15.65 0.00 36.12 4.40
249 250 1.532604 ATCTCCCACGTGTCGAAGCA 61.533 55.000 15.65 0.00 0.00 3.91
250 251 0.454600 TATCTCCCACGTGTCGAAGC 59.545 55.000 15.65 0.00 0.00 3.86
251 252 3.609644 GCTATATCTCCCACGTGTCGAAG 60.610 52.174 15.65 6.13 0.00 3.79
252 253 2.292569 GCTATATCTCCCACGTGTCGAA 59.707 50.000 15.65 0.00 0.00 3.71
253 254 1.878088 GCTATATCTCCCACGTGTCGA 59.122 52.381 15.65 8.55 0.00 4.20
254 255 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
255 256 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
256 257 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
257 258 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
258 259 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
259 260 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
260 261 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
261 262 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
262 263 1.066303 CTCGATGCGGCTATATCTCCC 59.934 57.143 0.00 0.00 0.00 4.30
263 264 1.066303 CCTCGATGCGGCTATATCTCC 59.934 57.143 0.00 0.00 0.00 3.71
264 265 2.017782 TCCTCGATGCGGCTATATCTC 58.982 52.381 0.00 0.00 0.00 2.75
265 266 1.746220 GTCCTCGATGCGGCTATATCT 59.254 52.381 0.00 0.00 0.00 1.98
266 267 1.532090 CGTCCTCGATGCGGCTATATC 60.532 57.143 0.00 0.00 39.71 1.63
267 268 0.452184 CGTCCTCGATGCGGCTATAT 59.548 55.000 0.00 0.00 39.71 0.86
268 269 0.887836 ACGTCCTCGATGCGGCTATA 60.888 55.000 0.00 0.00 40.62 1.31
269 270 1.735376 AACGTCCTCGATGCGGCTAT 61.735 55.000 0.00 0.00 40.62 2.97
270 271 1.096967 TAACGTCCTCGATGCGGCTA 61.097 55.000 0.00 0.00 40.62 3.93
271 272 2.412323 TAACGTCCTCGATGCGGCT 61.412 57.895 0.00 0.00 40.62 5.52
272 273 2.103538 TAACGTCCTCGATGCGGC 59.896 61.111 0.00 0.00 40.62 6.53
273 274 0.866061 CTGTAACGTCCTCGATGCGG 60.866 60.000 0.00 0.00 40.62 5.69
274 275 0.866061 CCTGTAACGTCCTCGATGCG 60.866 60.000 0.00 0.00 40.62 4.73
275 276 1.146358 GCCTGTAACGTCCTCGATGC 61.146 60.000 0.00 0.00 40.62 3.91
276 277 0.172578 TGCCTGTAACGTCCTCGATG 59.827 55.000 0.00 0.00 40.62 3.84
277 278 1.112113 ATGCCTGTAACGTCCTCGAT 58.888 50.000 0.00 0.00 40.62 3.59
278 279 0.172578 CATGCCTGTAACGTCCTCGA 59.827 55.000 0.00 0.00 40.62 4.04
279 280 0.172578 TCATGCCTGTAACGTCCTCG 59.827 55.000 0.00 0.00 43.34 4.63
280 281 2.000447 GTTCATGCCTGTAACGTCCTC 59.000 52.381 0.00 0.00 0.00 3.71
281 282 1.623811 AGTTCATGCCTGTAACGTCCT 59.376 47.619 0.00 0.00 0.00 3.85
282 283 2.094762 AGTTCATGCCTGTAACGTCC 57.905 50.000 0.00 0.00 0.00 4.79
283 284 3.187700 CCTAGTTCATGCCTGTAACGTC 58.812 50.000 0.00 0.00 0.00 4.34
284 285 2.093658 CCCTAGTTCATGCCTGTAACGT 60.094 50.000 0.00 0.00 0.00 3.99
285 286 2.167693 TCCCTAGTTCATGCCTGTAACG 59.832 50.000 0.00 0.00 0.00 3.18
286 287 3.432326 CCTCCCTAGTTCATGCCTGTAAC 60.432 52.174 0.00 0.00 0.00 2.50
287 288 2.771943 CCTCCCTAGTTCATGCCTGTAA 59.228 50.000 0.00 0.00 0.00 2.41
288 289 2.398588 CCTCCCTAGTTCATGCCTGTA 58.601 52.381 0.00 0.00 0.00 2.74
289 290 1.207791 CCTCCCTAGTTCATGCCTGT 58.792 55.000 0.00 0.00 0.00 4.00
290 291 0.179034 GCCTCCCTAGTTCATGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
291 292 1.348775 GGCCTCCCTAGTTCATGCCT 61.349 60.000 0.00 0.00 34.61 4.75
310 311 2.032981 GCCATAATCCACGGCCAAG 58.967 57.895 2.24 0.00 40.07 3.61
314 315 2.203153 ACGGCCATAATCCACGGC 60.203 61.111 2.24 0.00 45.47 5.68
357 358 2.252260 CAACAAAGCCAGCGACCG 59.748 61.111 0.00 0.00 0.00 4.79
380 381 4.503714 TGAACAACCCTCAAGTTCTCTT 57.496 40.909 0.00 0.00 41.56 2.85
391 392 4.040339 CCAGCCTTTAAAATGAACAACCCT 59.960 41.667 0.00 0.00 0.00 4.34
406 407 1.447317 CGACACACAAGCCAGCCTTT 61.447 55.000 0.00 0.00 0.00 3.11
417 418 4.314440 GCCAGGAGCCGACACACA 62.314 66.667 0.00 0.00 34.35 3.72
428 429 0.955428 CGCTAGCAACAAAGCCAGGA 60.955 55.000 16.45 0.00 35.22 3.86
429 430 1.237285 ACGCTAGCAACAAAGCCAGG 61.237 55.000 16.45 0.00 35.22 4.45
442 443 2.767505 ACCCTCAAGTTTTCACGCTAG 58.232 47.619 0.00 0.00 0.00 3.42
443 444 2.875933 CAACCCTCAAGTTTTCACGCTA 59.124 45.455 0.00 0.00 0.00 4.26
444 445 1.676006 CAACCCTCAAGTTTTCACGCT 59.324 47.619 0.00 0.00 0.00 5.07
446 447 1.676006 AGCAACCCTCAAGTTTTCACG 59.324 47.619 0.00 0.00 0.00 4.35
447 448 3.355626 GAGCAACCCTCAAGTTTTCAC 57.644 47.619 0.00 0.00 40.45 3.18
461 463 2.672195 GCCAGCCTACAAAATGAGCAAC 60.672 50.000 0.00 0.00 0.00 4.17
491 493 0.889186 AACGAAAGCCAACAGCCGAT 60.889 50.000 0.00 0.00 45.47 4.18
492 494 1.525077 AACGAAAGCCAACAGCCGA 60.525 52.632 0.00 0.00 45.47 5.54
497 499 1.732917 CCAGCAACGAAAGCCAACA 59.267 52.632 0.00 0.00 0.00 3.33
502 504 0.039256 TTCATGCCAGCAACGAAAGC 60.039 50.000 0.00 0.00 0.00 3.51
507 509 3.251729 AGCTATAATTCATGCCAGCAACG 59.748 43.478 0.00 0.00 0.00 4.10
518 520 5.488262 TCATGCCTAGCAGCTATAATTCA 57.512 39.130 1.54 0.00 43.65 2.57
526 528 2.114616 AGTAGTTCATGCCTAGCAGCT 58.885 47.619 0.00 0.00 43.65 4.24
529 531 2.168521 GACCAGTAGTTCATGCCTAGCA 59.831 50.000 0.00 0.00 44.86 3.49
533 535 2.092753 CCATGACCAGTAGTTCATGCCT 60.093 50.000 6.69 0.00 38.76 4.75
546 548 5.804944 ATGAAAATTTGTCACCATGACCA 57.195 34.783 6.51 0.00 46.40 4.02
547 549 6.890558 CAAATGAAAATTTGTCACCATGACC 58.109 36.000 6.51 0.00 46.40 4.02
578 580 0.179119 CTCGTCCGGTCGCCTAAAAT 60.179 55.000 16.54 0.00 0.00 1.82
588 590 1.883732 CAGACACATCTCGTCCGGT 59.116 57.895 0.00 0.00 33.70 5.28
589 591 1.517257 GCAGACACATCTCGTCCGG 60.517 63.158 0.00 0.00 33.70 5.14
595 597 1.008875 TCAACGCGCAGACACATCTC 61.009 55.000 5.73 0.00 30.42 2.75
620 622 3.620427 TTTTTCTAGATACGCTGGCCA 57.380 42.857 4.71 4.71 0.00 5.36
625 627 4.098960 TCCGACCATTTTTCTAGATACGCT 59.901 41.667 0.00 0.00 0.00 5.07
626 628 4.208666 GTCCGACCATTTTTCTAGATACGC 59.791 45.833 0.00 0.00 0.00 4.42
627 629 4.440103 CGTCCGACCATTTTTCTAGATACG 59.560 45.833 0.00 0.00 0.00 3.06
628 630 5.346522 ACGTCCGACCATTTTTCTAGATAC 58.653 41.667 0.00 0.00 0.00 2.24
629 631 5.587388 ACGTCCGACCATTTTTCTAGATA 57.413 39.130 0.00 0.00 0.00 1.98
630 632 4.467198 ACGTCCGACCATTTTTCTAGAT 57.533 40.909 0.00 0.00 0.00 1.98
631 633 3.947910 ACGTCCGACCATTTTTCTAGA 57.052 42.857 0.00 0.00 0.00 2.43
632 634 4.741342 ACTACGTCCGACCATTTTTCTAG 58.259 43.478 0.00 0.00 0.00 2.43
633 635 4.380867 GGACTACGTCCGACCATTTTTCTA 60.381 45.833 0.00 0.00 43.14 2.10
634 636 3.582780 GACTACGTCCGACCATTTTTCT 58.417 45.455 0.00 0.00 0.00 2.52
635 637 2.669924 GGACTACGTCCGACCATTTTTC 59.330 50.000 0.00 0.00 43.14 2.29
636 638 2.691927 GGACTACGTCCGACCATTTTT 58.308 47.619 0.00 0.00 43.14 1.94
649 651 7.041372 CCATTTAAATAGGACAATGGGACTACG 60.041 40.741 0.00 0.00 41.38 3.51
652 654 6.980577 TCCATTTAAATAGGACAATGGGACT 58.019 36.000 12.57 0.00 44.06 3.85
670 672 8.435982 TCTGTTTTATCCCAATTTTGTCCATTT 58.564 29.630 0.00 0.00 0.00 2.32
683 685 2.262637 ACGGAGGTCTGTTTTATCCCA 58.737 47.619 0.00 0.00 29.59 4.37
684 686 3.345508 AACGGAGGTCTGTTTTATCCC 57.654 47.619 0.00 0.00 42.39 3.85
698 700 3.361977 CCAACGCCCCAAACGGAG 61.362 66.667 0.00 0.00 34.00 4.63
702 704 1.362355 CAACTCCAACGCCCCAAAC 59.638 57.895 0.00 0.00 0.00 2.93
707 709 0.035739 TAAGACCAACTCCAACGCCC 59.964 55.000 0.00 0.00 0.00 6.13
727 735 1.494721 GGAGGATTCCAGCCCACAATA 59.505 52.381 5.29 0.00 43.45 1.90
730 738 2.669133 CGGAGGATTCCAGCCCACA 61.669 63.158 5.29 0.00 44.26 4.17
731 739 2.190578 CGGAGGATTCCAGCCCAC 59.809 66.667 5.29 0.00 44.26 4.61
747 755 1.627879 AATTTTTACTGCCATGCGCG 58.372 45.000 0.00 0.00 42.08 6.86
750 758 5.922544 CCTAGCATAATTTTTACTGCCATGC 59.077 40.000 0.00 0.00 38.02 4.06
753 822 5.200483 AGCCTAGCATAATTTTTACTGCCA 58.800 37.500 0.00 0.00 35.21 4.92
819 888 0.395312 GGTCGGGTGGACTCTCAAAA 59.605 55.000 0.00 0.00 45.35 2.44
918 987 1.338200 CGAGAAGGCTAAGGTGTGCTT 60.338 52.381 0.00 0.00 0.00 3.91
919 988 0.247736 CGAGAAGGCTAAGGTGTGCT 59.752 55.000 0.00 0.00 0.00 4.40
920 989 1.362406 GCGAGAAGGCTAAGGTGTGC 61.362 60.000 0.00 0.00 0.00 4.57
921 990 0.247736 AGCGAGAAGGCTAAGGTGTG 59.752 55.000 0.00 0.00 42.62 3.82
922 991 1.848652 TAGCGAGAAGGCTAAGGTGT 58.151 50.000 0.00 0.00 42.26 4.16
1058 1140 0.032515 TCTCCTATGCTGGTTCGGGA 60.033 55.000 0.00 0.00 0.00 5.14
1137 1219 2.357034 TTCGGACGGAGCAGCAAC 60.357 61.111 0.00 0.00 0.00 4.17
1188 1270 0.454620 CGCTATCTATCACCGCCGAC 60.455 60.000 0.00 0.00 0.00 4.79
1192 1274 1.801913 CGCCGCTATCTATCACCGC 60.802 63.158 0.00 0.00 0.00 5.68
1354 1436 1.922570 GCAGGAAGCAAGCAATCATG 58.077 50.000 7.76 7.76 44.79 3.07
1381 1464 2.030027 ATCCACCTCACAGTCCAAGA 57.970 50.000 0.00 0.00 0.00 3.02
1382 1465 2.430465 CAATCCACCTCACAGTCCAAG 58.570 52.381 0.00 0.00 0.00 3.61
1393 1476 1.444933 TCAGAACCACCAATCCACCT 58.555 50.000 0.00 0.00 0.00 4.00
1397 1480 2.094675 CCACATCAGAACCACCAATCC 58.905 52.381 0.00 0.00 0.00 3.01
1468 1557 1.007502 CGTAAACACGACCACGGGA 60.008 57.895 0.00 0.00 46.86 5.14
1484 1573 1.012486 GGTGCCGATTTCGACTTCGT 61.012 55.000 13.35 0.00 43.02 3.85
1486 1575 1.693083 CCGGTGCCGATTTCGACTTC 61.693 60.000 12.71 0.00 43.02 3.01
1555 1644 1.761198 CACAGCCCTGAGATGAGATCA 59.239 52.381 1.69 0.00 0.00 2.92
1568 1657 3.243401 ACGAAGTTGAAAAATCACAGCCC 60.243 43.478 0.00 0.00 37.78 5.19
1580 1669 3.787785 TGAACTGCAGTACGAAGTTGAA 58.212 40.909 22.01 2.66 37.78 2.69
1588 1677 6.972901 TGAGAAGTATAATGAACTGCAGTACG 59.027 38.462 22.01 0.00 28.71 3.67
1589 1678 8.879342 ATGAGAAGTATAATGAACTGCAGTAC 57.121 34.615 22.01 12.72 28.71 2.73
1590 1679 9.534565 GAATGAGAAGTATAATGAACTGCAGTA 57.465 33.333 22.01 5.63 0.00 2.74
1591 1680 8.263640 AGAATGAGAAGTATAATGAACTGCAGT 58.736 33.333 15.25 15.25 0.00 4.40
1593 1682 7.011763 GCAGAATGAGAAGTATAATGAACTGCA 59.988 37.037 0.00 0.00 42.24 4.41
1594 1683 7.011763 TGCAGAATGAGAAGTATAATGAACTGC 59.988 37.037 0.00 0.00 39.69 4.40
1595 1684 8.429493 TGCAGAATGAGAAGTATAATGAACTG 57.571 34.615 0.00 0.00 39.69 3.16
1596 1685 9.107177 CTTGCAGAATGAGAAGTATAATGAACT 57.893 33.333 0.00 0.00 39.69 3.01
1597 1686 9.102757 TCTTGCAGAATGAGAAGTATAATGAAC 57.897 33.333 0.00 0.00 39.69 3.18
1598 1687 9.671279 TTCTTGCAGAATGAGAAGTATAATGAA 57.329 29.630 0.00 0.00 39.69 2.57
1599 1688 9.671279 TTTCTTGCAGAATGAGAAGTATAATGA 57.329 29.630 0.00 0.00 39.69 2.57
1603 1692 9.725019 TCTTTTTCTTGCAGAATGAGAAGTATA 57.275 29.630 0.00 0.00 39.69 1.47
1604 1693 8.510505 GTCTTTTTCTTGCAGAATGAGAAGTAT 58.489 33.333 0.00 0.00 39.69 2.12
1605 1694 7.716998 AGTCTTTTTCTTGCAGAATGAGAAGTA 59.283 33.333 0.00 0.00 39.69 2.24
1606 1695 6.545298 AGTCTTTTTCTTGCAGAATGAGAAGT 59.455 34.615 0.00 0.00 39.69 3.01
1607 1696 6.856938 CAGTCTTTTTCTTGCAGAATGAGAAG 59.143 38.462 0.00 3.33 39.69 2.85
1608 1697 6.732154 CAGTCTTTTTCTTGCAGAATGAGAA 58.268 36.000 0.00 0.00 39.69 2.87
1609 1698 5.278169 GCAGTCTTTTTCTTGCAGAATGAGA 60.278 40.000 2.03 5.17 39.69 3.27
1610 1699 4.916249 GCAGTCTTTTTCTTGCAGAATGAG 59.084 41.667 2.03 3.38 39.69 2.90
1611 1700 4.261741 GGCAGTCTTTTTCTTGCAGAATGA 60.262 41.667 2.03 0.00 39.69 2.57
1612 1701 3.985925 GGCAGTCTTTTTCTTGCAGAATG 59.014 43.478 0.00 0.00 33.67 2.67
1613 1702 3.638160 TGGCAGTCTTTTTCTTGCAGAAT 59.362 39.130 0.00 0.00 33.67 2.40
1614 1703 3.023119 TGGCAGTCTTTTTCTTGCAGAA 58.977 40.909 0.00 0.00 31.28 3.02
1615 1704 2.653726 TGGCAGTCTTTTTCTTGCAGA 58.346 42.857 0.00 0.00 0.00 4.26
1616 1705 3.655276 ATGGCAGTCTTTTTCTTGCAG 57.345 42.857 0.00 0.00 0.00 4.41
1617 1706 4.121317 CAAATGGCAGTCTTTTTCTTGCA 58.879 39.130 0.00 0.00 0.00 4.08
1618 1707 3.495753 CCAAATGGCAGTCTTTTTCTTGC 59.504 43.478 0.00 0.00 0.00 4.01
1633 1722 3.056393 TGAAGCATGAAGAAGCCAAATGG 60.056 43.478 0.00 0.00 38.53 3.16
1641 1730 5.083533 ACTAGGAGTGAAGCATGAAGAAG 57.916 43.478 0.00 0.00 0.00 2.85
1642 1731 4.528206 TGACTAGGAGTGAAGCATGAAGAA 59.472 41.667 0.00 0.00 0.00 2.52
1669 1759 1.053424 AAAGGAGTTGTACCGAGCCA 58.947 50.000 0.00 0.00 0.00 4.75
1677 1767 7.176515 ATGTATGCATTTCACAAAGGAGTTGTA 59.823 33.333 3.54 0.00 39.27 2.41
1679 1769 5.771469 TGTATGCATTTCACAAAGGAGTTG 58.229 37.500 3.54 0.00 43.43 3.16
1718 1838 0.458025 GGTACAGAAAGCCGTCCTCG 60.458 60.000 0.00 0.00 0.00 4.63
1740 1861 3.119291 CCTCAGAACACGATAGACATGC 58.881 50.000 0.00 0.00 41.38 4.06
1744 1865 2.803451 CAGCCTCAGAACACGATAGAC 58.197 52.381 0.00 0.00 41.38 2.59
1751 1872 1.072159 ACTGGCAGCCTCAGAACAC 59.928 57.895 15.89 0.00 36.22 3.32
1753 1874 0.035630 ATCACTGGCAGCCTCAGAAC 60.036 55.000 15.89 0.00 36.22 3.01
1760 1881 2.267174 ACATATGATCACTGGCAGCC 57.733 50.000 15.89 3.66 0.00 4.85
1785 1906 7.041721 TCGCATCTGTAAGTTTCTATGTGATT 58.958 34.615 0.00 0.00 31.09 2.57
1788 1970 6.834959 ATCGCATCTGTAAGTTTCTATGTG 57.165 37.500 0.00 0.00 33.76 3.21
1829 2011 4.708177 ACACAAGTTCATGCAACTAGAGT 58.292 39.130 0.00 7.47 45.32 3.24
1858 2040 2.895404 AGCCATCACACTGAAGCAAAAT 59.105 40.909 0.00 0.00 33.66 1.82
1875 2057 0.036388 GTGGATTTCGGTCAGAGCCA 60.036 55.000 0.00 0.00 0.00 4.75
1901 2083 9.868277 TTGGAGGCACAAATATATAAAAACTTG 57.132 29.630 0.00 0.00 0.00 3.16
1903 2085 9.255029 ACTTGGAGGCACAAATATATAAAAACT 57.745 29.630 0.00 0.00 0.00 2.66
1904 2086 9.301153 CACTTGGAGGCACAAATATATAAAAAC 57.699 33.333 0.00 0.00 0.00 2.43
1905 2087 9.030452 ACACTTGGAGGCACAAATATATAAAAA 57.970 29.630 0.00 0.00 0.00 1.94
1906 2088 8.588290 ACACTTGGAGGCACAAATATATAAAA 57.412 30.769 0.00 0.00 0.00 1.52
1909 2091 7.221450 GGTACACTTGGAGGCACAAATATATA 58.779 38.462 0.00 0.00 0.00 0.86
1911 2093 5.433526 GGTACACTTGGAGGCACAAATATA 58.566 41.667 0.00 0.00 0.00 0.86
1912 2094 4.270008 GGTACACTTGGAGGCACAAATAT 58.730 43.478 0.00 0.00 0.00 1.28
1913 2095 3.560453 GGGTACACTTGGAGGCACAAATA 60.560 47.826 0.00 0.00 0.00 1.40
1914 2096 2.514803 GGTACACTTGGAGGCACAAAT 58.485 47.619 0.00 0.00 0.00 2.32
1928 2110 0.324943 ACTGAGGCACATGGGTACAC 59.675 55.000 0.00 0.00 0.00 2.90
1931 2113 2.554344 GGAAAACTGAGGCACATGGGTA 60.554 50.000 0.00 0.00 0.00 3.69
1942 2124 5.582689 AACACTTGAAAGGGAAAACTGAG 57.417 39.130 0.00 0.00 32.48 3.35
1950 2132 5.200483 ACAATCTGAAACACTTGAAAGGGA 58.800 37.500 0.00 0.00 32.48 4.20
1965 2147 6.709846 TGTGTGTGTCATGAAATACAATCTGA 59.290 34.615 16.23 0.00 0.00 3.27
1966 2148 6.901265 TGTGTGTGTCATGAAATACAATCTG 58.099 36.000 16.23 0.00 0.00 2.90
1987 2169 2.569059 CATGGGCTAAGACATCCTGTG 58.431 52.381 0.00 0.00 0.00 3.66
1988 2170 1.492176 CCATGGGCTAAGACATCCTGT 59.508 52.381 2.85 0.00 0.00 4.00
2009 2191 5.102953 TCCCTGTTTCACAATGGAGATAG 57.897 43.478 0.00 0.00 29.14 2.08
2013 2195 3.693085 CAGATCCCTGTTTCACAATGGAG 59.307 47.826 0.00 0.00 34.06 3.86
2016 2198 4.157289 CCTTCAGATCCCTGTTTCACAATG 59.843 45.833 0.00 0.00 41.16 2.82
2047 2229 6.621596 GCTTCAAGTAACCAGCAAGTAGAATG 60.622 42.308 0.00 0.00 32.17 2.67
2232 2414 4.151121 TGGAGGAAAATGCAAGATGTTGA 58.849 39.130 6.80 0.00 35.46 3.18
2254 2436 3.467803 GAGCCGATGCCAAGTACTTATT 58.532 45.455 8.04 0.00 38.69 1.40
2271 2453 3.801594 TGCACAAATTTTTCTTTCGAGCC 59.198 39.130 0.00 0.00 0.00 4.70
2272 2454 5.388225 TTGCACAAATTTTTCTTTCGAGC 57.612 34.783 0.00 0.00 0.00 5.03
2275 2457 5.141355 TGCTTGCACAAATTTTTCTTTCG 57.859 34.783 0.00 0.00 0.00 3.46
2495 2685 1.623811 GCTAAGGTCTTCCCTGTGTCA 59.376 52.381 0.00 0.00 45.47 3.58
2507 2697 2.814336 CACAACTCTTTGGGCTAAGGTC 59.186 50.000 0.00 0.00 37.00 3.85
2599 2789 6.476243 TTGTACCGCTAAGAAATCTCAAAC 57.524 37.500 0.00 0.00 0.00 2.93
2723 3033 1.080093 GACACCATCGTCTCGCCAA 60.080 57.895 0.00 0.00 32.92 4.52
2862 3172 2.159254 ACGGTGTGTGTTAACTACGTGT 60.159 45.455 7.22 3.93 33.88 4.49
2865 3175 3.306703 ACAAACGGTGTGTGTTAACTACG 59.693 43.478 2.46 5.15 39.72 3.51
3039 3355 4.203226 TGAGTTGAACACAATGCAAGGTA 58.797 39.130 0.00 0.00 0.00 3.08
3040 3356 3.023119 TGAGTTGAACACAATGCAAGGT 58.977 40.909 0.00 0.00 0.00 3.50
3042 3358 5.045215 ACAATGAGTTGAACACAATGCAAG 58.955 37.500 10.09 0.00 38.71 4.01
3044 3360 4.652421 ACAATGAGTTGAACACAATGCA 57.348 36.364 10.09 0.00 38.71 3.96
3045 3361 5.574055 CCATACAATGAGTTGAACACAATGC 59.426 40.000 10.09 0.00 38.71 3.56
3046 3362 5.574055 GCCATACAATGAGTTGAACACAATG 59.426 40.000 8.86 8.86 38.71 2.82
3047 3363 5.477984 AGCCATACAATGAGTTGAACACAAT 59.522 36.000 0.00 0.00 38.71 2.71
3048 3364 4.826733 AGCCATACAATGAGTTGAACACAA 59.173 37.500 0.00 0.00 38.71 3.33
3163 3479 3.319122 GGAAAACAGCACTGGAACTGAAT 59.681 43.478 2.21 0.00 37.35 2.57
3196 4959 5.411781 AGGAGTGTAGCTAGAAACAAATCG 58.588 41.667 0.00 0.00 0.00 3.34
3197 4960 8.035984 ACTAAGGAGTGTAGCTAGAAACAAATC 58.964 37.037 0.00 0.00 33.41 2.17
3198 4961 7.908453 ACTAAGGAGTGTAGCTAGAAACAAAT 58.092 34.615 0.00 0.00 33.41 2.32
3199 4962 7.299246 ACTAAGGAGTGTAGCTAGAAACAAA 57.701 36.000 0.00 0.00 33.41 2.83
3200 4963 6.912951 ACTAAGGAGTGTAGCTAGAAACAA 57.087 37.500 0.00 0.00 33.41 2.83
3201 4964 6.912951 AACTAAGGAGTGTAGCTAGAAACA 57.087 37.500 0.00 0.00 35.52 2.83
3202 4965 7.376615 TGAAACTAAGGAGTGTAGCTAGAAAC 58.623 38.462 0.00 0.00 35.52 2.78
3203 4966 7.232941 ACTGAAACTAAGGAGTGTAGCTAGAAA 59.767 37.037 0.00 0.00 35.52 2.52
3204 4967 6.720288 ACTGAAACTAAGGAGTGTAGCTAGAA 59.280 38.462 0.00 0.00 35.52 2.10
3205 4968 6.151312 CACTGAAACTAAGGAGTGTAGCTAGA 59.849 42.308 0.00 0.00 35.52 2.43
3206 4969 6.151312 TCACTGAAACTAAGGAGTGTAGCTAG 59.849 42.308 0.00 0.00 37.63 3.42
3207 4970 6.008331 TCACTGAAACTAAGGAGTGTAGCTA 58.992 40.000 0.00 0.00 37.63 3.32
3208 4971 4.833380 TCACTGAAACTAAGGAGTGTAGCT 59.167 41.667 0.00 0.00 37.63 3.32
3238 5001 6.626238 TGACTATAGGGTATGTGGATAACCA 58.374 40.000 4.43 0.00 43.74 3.67
3424 5188 8.877779 CAAGGTAAAACTCAAGTGATAGAGATG 58.122 37.037 0.00 0.00 35.83 2.90
3465 5229 1.597742 GCAAGAGAGTTGTCAAGCCA 58.402 50.000 0.00 0.00 0.00 4.75
3477 5241 2.144078 TCCCCAACACGGCAAGAGA 61.144 57.895 0.00 0.00 0.00 3.10
3483 5247 1.792118 GAACTTGTCCCCAACACGGC 61.792 60.000 0.00 0.00 37.70 5.68
3502 5266 7.259290 ACACCTACACAGAAAACATAAACAG 57.741 36.000 0.00 0.00 0.00 3.16
3515 5279 2.284150 CACGTCAACAACACCTACACAG 59.716 50.000 0.00 0.00 0.00 3.66
3521 5285 2.093869 AGTACACACGTCAACAACACCT 60.094 45.455 0.00 0.00 0.00 4.00
3534 5298 8.693625 ACCAGTAGGATATTCTAAAGTACACAC 58.306 37.037 0.00 0.00 38.69 3.82
3604 5368 1.612726 CCAAGAGGAAGGGTGAAGCAG 60.613 57.143 0.00 0.00 36.89 4.24
3633 5397 2.881074 CTACTCCCACATGAGTCGTTG 58.119 52.381 0.00 0.00 44.30 4.10
3640 5404 0.909133 TGGCTGCTACTCCCACATGA 60.909 55.000 0.00 0.00 0.00 3.07
3641 5405 0.745845 GTGGCTGCTACTCCCACATG 60.746 60.000 9.05 0.00 46.38 3.21
3642 5406 1.604378 GTGGCTGCTACTCCCACAT 59.396 57.895 9.05 0.00 46.38 3.21
3643 5407 3.068881 GTGGCTGCTACTCCCACA 58.931 61.111 9.05 0.00 46.38 4.17
3644 5408 2.245438 GAGGTGGCTGCTACTCCCAC 62.245 65.000 15.83 6.05 46.40 4.61
3645 5409 1.990060 GAGGTGGCTGCTACTCCCA 60.990 63.158 15.83 0.00 0.00 4.37
3670 5434 4.478203 TCTAGCTCAGTATCCAGCAATCT 58.522 43.478 0.00 0.00 38.18 2.40
3678 5442 1.203125 AGGCCCTCTAGCTCAGTATCC 60.203 57.143 0.00 0.00 0.00 2.59
3684 5448 2.370445 GCCAAGGCCCTCTAGCTCA 61.370 63.158 0.00 0.00 34.56 4.26
3690 5454 0.411058 AAAGAATGCCAAGGCCCTCT 59.589 50.000 8.89 7.38 41.09 3.69
3723 5487 4.065088 GACAACTACAGAGACAAATGCCA 58.935 43.478 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.