Multiple sequence alignment - TraesCS7A01G242000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G242000 chr7A 100.000 3695 0 0 1 3695 217528279 217531973 0.000000e+00 6824
1 TraesCS7A01G242000 chr7A 95.312 64 2 1 3430 3493 137020145 137020083 2.350000e-17 100
2 TraesCS7A01G242000 chr7D 96.002 3402 106 14 16 3405 205495854 205499237 0.000000e+00 5502
3 TraesCS7A01G242000 chr7B 96.349 2438 79 5 697 3129 197001017 196998585 0.000000e+00 4000
4 TraesCS7A01G242000 chr7B 88.543 707 46 14 16 707 197003418 197002732 0.000000e+00 824
5 TraesCS7A01G242000 chr7B 92.473 279 10 3 3127 3405 196998427 196998160 4.470000e-104 388
6 TraesCS7A01G242000 chr6D 94.340 212 11 1 3485 3695 430384326 430384537 1.280000e-84 324
7 TraesCS7A01G242000 chr6D 88.626 211 24 0 3485 3695 53770654 53770444 1.320000e-64 257
8 TraesCS7A01G242000 chr6D 96.721 61 2 0 3425 3485 429323510 429323450 6.530000e-18 102
9 TraesCS7A01G242000 chr2A 93.365 211 14 0 3485 3695 777672603 777672393 2.770000e-81 313
10 TraesCS7A01G242000 chr5D 92.453 212 14 2 3485 3695 562693691 562693901 6.000000e-78 302
11 TraesCS7A01G242000 chr5D 89.100 211 22 1 3485 3695 41426421 41426630 1.020000e-65 261
12 TraesCS7A01G242000 chr1A 92.344 209 14 2 3488 3695 249061325 249061532 2.790000e-76 296
13 TraesCS7A01G242000 chr6A 90.521 211 20 0 3485 3695 377726627 377726837 2.810000e-71 279
14 TraesCS7A01G242000 chr4A 89.423 208 22 0 3488 3695 19285960 19285753 2.830000e-66 263
15 TraesCS7A01G242000 chr2B 88.626 211 24 0 3485 3695 90694674 90694884 1.320000e-64 257
16 TraesCS7A01G242000 chr1B 92.941 85 5 1 3406 3490 118169082 118169165 5.010000e-24 122
17 TraesCS7A01G242000 chr1B 90.909 88 7 1 3406 3493 118097045 118096959 2.330000e-22 117
18 TraesCS7A01G242000 chrUn 96.721 61 2 0 3425 3485 94072844 94072904 6.530000e-18 102
19 TraesCS7A01G242000 chr2D 96.721 61 2 0 3425 3485 1706553 1706493 6.530000e-18 102
20 TraesCS7A01G242000 chr2D 96.721 61 2 0 3425 3485 1710608 1710548 6.530000e-18 102
21 TraesCS7A01G242000 chr3D 95.312 64 2 1 3430 3493 91307700 91307762 2.350000e-17 100
22 TraesCS7A01G242000 chr4B 98.214 56 1 0 3430 3485 30787013 30786958 8.450000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G242000 chr7A 217528279 217531973 3694 False 6824.000000 6824 100.000 1 3695 1 chr7A.!!$F1 3694
1 TraesCS7A01G242000 chr7D 205495854 205499237 3383 False 5502.000000 5502 96.002 16 3405 1 chr7D.!!$F1 3389
2 TraesCS7A01G242000 chr7B 196998160 197003418 5258 True 1737.333333 4000 92.455 16 3405 3 chr7B.!!$R1 3389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 287 0.109873 CACGTACTTCGCTCGGACTT 60.110 55.000 0.0 0.0 44.19 3.01 F
436 452 1.370900 GCGGCTTCAGTTTGTGCTG 60.371 57.895 0.0 0.0 37.81 4.41 F
1687 3430 1.042229 TGAAGCTGCCAGTTTTGCAT 58.958 45.000 0.0 0.0 38.22 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 2883 1.674221 GCAAGCTCACAATCGACCTCT 60.674 52.381 0.00 0.0 0.0 3.69 R
2081 3824 1.729586 AGTTTCTAGTGCACCCTCCA 58.270 50.000 14.63 0.0 0.0 3.86 R
3665 5569 0.042731 TCCCACCGGATCTTCCTCTT 59.957 55.000 9.46 0.0 33.3 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 180 1.766059 CATCACCCCCTCGATCCCA 60.766 63.158 0.00 0.00 0.00 4.37
267 274 2.109387 TGTGGTGTGGGCACGTAC 59.891 61.111 0.00 0.00 46.13 3.67
268 275 2.424302 GTGGTGTGGGCACGTACT 59.576 61.111 0.00 0.00 46.13 2.73
278 285 2.150837 GCACGTACTTCGCTCGGAC 61.151 63.158 0.00 0.00 44.19 4.79
280 287 0.109873 CACGTACTTCGCTCGGACTT 60.110 55.000 0.00 0.00 44.19 3.01
332 339 4.275781 CAGGTTGGTGGCCTGTTT 57.724 55.556 3.32 0.00 46.22 2.83
348 355 4.082787 GCCTGTTTGCTTCAGTTATTGCTA 60.083 41.667 0.00 0.00 0.00 3.49
376 383 1.803334 GTGTGATTTCGTGGTAGCCA 58.197 50.000 0.00 0.00 0.00 4.75
381 388 2.027653 TGATTTCGTGGTAGCCATGTGA 60.028 45.455 7.19 0.00 41.03 3.58
436 452 1.370900 GCGGCTTCAGTTTGTGCTG 60.371 57.895 0.00 0.00 37.81 4.41
478 494 2.579873 CGGTTCTAGGAGGTCCGAATA 58.420 52.381 0.00 0.00 43.22 1.75
491 507 5.114081 AGGTCCGAATATAGGTCGTTTTTG 58.886 41.667 7.58 0.00 36.77 2.44
498 514 6.479001 CGAATATAGGTCGTTTTTGGTGAGAT 59.521 38.462 1.39 0.00 33.80 2.75
564 580 6.092955 TCGTACAAGTGTTCTAGGTGATTT 57.907 37.500 0.00 0.00 0.00 2.17
596 612 6.926630 AGGCCAACAGAAATAAAAATGGTA 57.073 33.333 5.01 0.00 0.00 3.25
597 613 6.697395 AGGCCAACAGAAATAAAAATGGTAC 58.303 36.000 5.01 0.00 0.00 3.34
598 614 6.496911 AGGCCAACAGAAATAAAAATGGTACT 59.503 34.615 5.01 0.00 0.00 2.73
653 669 6.432403 AGAGAAGGGCTAGAAGGATTTATG 57.568 41.667 0.00 0.00 0.00 1.90
654 670 4.979335 AGAAGGGCTAGAAGGATTTATGC 58.021 43.478 0.00 0.00 0.00 3.14
690 706 2.426024 TCATACTTCTGGACCGTGTAGC 59.574 50.000 0.00 0.00 0.00 3.58
695 2436 3.276857 CTTCTGGACCGTGTAGCTAGTA 58.723 50.000 0.00 0.00 0.00 1.82
824 2566 7.039574 TGACAATTCATGAACAGTGATTTCCAT 60.040 33.333 11.07 0.00 0.00 3.41
939 2682 2.032634 GCTGAAATCACCGCGGACA 61.033 57.895 35.90 18.42 0.00 4.02
978 2721 6.201806 GTCTCTGATACTGATTGGTGTATTGC 59.798 42.308 0.00 0.00 30.49 3.56
1062 2805 4.304939 AGAGTAGTTACAGCCGTGAAAAC 58.695 43.478 0.00 0.00 0.00 2.43
1140 2883 1.360931 CCGATGACTGCGAACATGCA 61.361 55.000 0.00 0.00 43.95 3.96
1214 2957 1.845791 TGGGCTTTATGATCTGCCTGA 59.154 47.619 0.00 0.00 44.36 3.86
1380 3123 2.715763 TTGGGAGTCCACTTAGAGGT 57.284 50.000 12.30 0.00 43.94 3.85
1541 3284 2.224378 TGGACAAGCTGTGGAGAAGAAG 60.224 50.000 0.00 0.00 0.00 2.85
1687 3430 1.042229 TGAAGCTGCCAGTTTTGCAT 58.958 45.000 0.00 0.00 38.22 3.96
1771 3514 5.491635 GGAGATAGTCCATGAAGCAAAAC 57.508 43.478 0.00 0.00 46.10 2.43
1794 3537 4.034510 CCAGTGGAAATTAGCTCATCGAAC 59.965 45.833 1.68 0.00 0.00 3.95
1814 3557 2.948979 ACAGTCGCATTTTTCACCTTCA 59.051 40.909 0.00 0.00 0.00 3.02
1824 3567 2.655090 TTCACCTTCAAGATGTGCCA 57.345 45.000 0.00 0.00 0.00 4.92
1883 3626 1.888512 AGCAAATGCCGACAGTGATTT 59.111 42.857 0.00 0.00 43.38 2.17
1909 3652 2.561419 GCTGATGGCAATGCAGGAATAT 59.439 45.455 7.79 0.00 41.35 1.28
1910 3653 3.614150 GCTGATGGCAATGCAGGAATATG 60.614 47.826 7.79 0.00 41.35 1.78
2081 3824 2.044452 GCTCAAAAGCCTGGCAGTT 58.956 52.632 22.65 11.65 43.10 3.16
2148 3891 1.068055 GGAGTCCAGCATGCTGTTTTG 60.068 52.381 38.22 26.08 42.15 2.44
2206 3949 1.757118 GTGGGTATCAGTCAGCAGCTA 59.243 52.381 0.00 0.00 0.00 3.32
2207 3950 2.168521 GTGGGTATCAGTCAGCAGCTAA 59.831 50.000 0.00 0.00 0.00 3.09
2208 3951 3.041211 TGGGTATCAGTCAGCAGCTAAT 58.959 45.455 0.00 0.00 0.00 1.73
2493 4236 3.710326 CTCAAACAGCATCATGATGGG 57.290 47.619 31.62 12.56 38.24 4.00
2501 4244 2.108425 AGCATCATGATGGGCTGAAGAT 59.892 45.455 31.62 4.22 39.16 2.40
2566 4309 6.015350 AGGACATAGATTCCCTTACACATACG 60.015 42.308 0.00 0.00 33.01 3.06
2749 4492 2.562296 AGAGATGGGGAGTTGGCTTAA 58.438 47.619 0.00 0.00 0.00 1.85
2850 4593 8.135529 TGTTACAGTATCATTCGGTATCTCAAG 58.864 37.037 0.00 0.00 0.00 3.02
2862 4605 4.882427 CGGTATCTCAAGAGGACAAGTAGA 59.118 45.833 0.00 0.00 0.00 2.59
2919 4662 7.221067 CAGTCGAGTCTCACACCTAATTATTTC 59.779 40.741 0.00 0.00 0.00 2.17
2941 4684 3.508762 CCAATGACTCTTTGCTGCAATC 58.491 45.455 16.77 11.06 0.00 2.67
3112 4856 7.948137 TCAACTTTGACGAAAAATGAAAACTG 58.052 30.769 0.00 0.00 31.01 3.16
3201 5105 5.757808 TGACTGAATTTTCACAGATTCGTCA 59.242 36.000 13.94 13.94 39.89 4.35
3265 5169 4.830046 TCTAGCATCAACCAGAGAGGATAC 59.170 45.833 0.00 0.00 41.22 2.24
3305 5209 5.074377 ACCATGCCACCATCTTATATTACCA 59.926 40.000 0.00 0.00 0.00 3.25
3383 5287 5.469479 ACCCTGAATTCTTTTTATGTTGCG 58.531 37.500 7.05 0.00 0.00 4.85
3384 5288 4.327087 CCCTGAATTCTTTTTATGTTGCGC 59.673 41.667 0.00 0.00 0.00 6.09
3405 5309 3.488216 GCGATCCAAAAGGAAGATGAAGC 60.488 47.826 0.00 0.00 0.00 3.86
3406 5310 3.065925 CGATCCAAAAGGAAGATGAAGCC 59.934 47.826 0.00 0.00 0.00 4.35
3407 5311 2.436417 TCCAAAAGGAAGATGAAGCCG 58.564 47.619 0.00 0.00 0.00 5.52
3408 5312 2.039746 TCCAAAAGGAAGATGAAGCCGA 59.960 45.455 0.00 0.00 0.00 5.54
3409 5313 2.819608 CCAAAAGGAAGATGAAGCCGAA 59.180 45.455 0.00 0.00 0.00 4.30
3410 5314 3.255642 CCAAAAGGAAGATGAAGCCGAAA 59.744 43.478 0.00 0.00 0.00 3.46
3411 5315 4.082026 CCAAAAGGAAGATGAAGCCGAAAT 60.082 41.667 0.00 0.00 0.00 2.17
3412 5316 5.125417 CCAAAAGGAAGATGAAGCCGAAATA 59.875 40.000 0.00 0.00 0.00 1.40
3413 5317 6.261118 CAAAAGGAAGATGAAGCCGAAATAG 58.739 40.000 0.00 0.00 0.00 1.73
3414 5318 4.078639 AGGAAGATGAAGCCGAAATAGG 57.921 45.455 0.00 0.00 0.00 2.57
3415 5319 3.142174 GGAAGATGAAGCCGAAATAGGG 58.858 50.000 0.00 0.00 0.00 3.53
3416 5320 3.433740 GGAAGATGAAGCCGAAATAGGGT 60.434 47.826 0.00 0.00 45.04 4.34
3422 5326 2.711978 AGCCGAAATAGGGTTTCCTC 57.288 50.000 0.00 0.00 43.66 3.71
3423 5327 1.212195 AGCCGAAATAGGGTTTCCTCC 59.788 52.381 0.00 0.00 43.66 4.30
3424 5328 1.212195 GCCGAAATAGGGTTTCCTCCT 59.788 52.381 0.00 0.00 43.66 3.69
3425 5329 2.919228 CCGAAATAGGGTTTCCTCCTG 58.081 52.381 0.00 0.00 43.66 3.86
3426 5330 2.289565 CGAAATAGGGTTTCCTCCTGC 58.710 52.381 0.00 0.00 43.66 4.85
3427 5331 2.092914 CGAAATAGGGTTTCCTCCTGCT 60.093 50.000 0.00 0.00 43.66 4.24
3428 5332 3.622455 CGAAATAGGGTTTCCTCCTGCTT 60.622 47.826 0.00 0.00 43.66 3.91
3429 5333 4.344978 GAAATAGGGTTTCCTCCTGCTTT 58.655 43.478 0.00 0.00 43.66 3.51
3430 5334 3.653835 ATAGGGTTTCCTCCTGCTTTC 57.346 47.619 0.00 0.00 43.66 2.62
3431 5335 1.450360 AGGGTTTCCTCCTGCTTTCT 58.550 50.000 0.00 0.00 39.80 2.52
3432 5336 1.352687 AGGGTTTCCTCCTGCTTTCTC 59.647 52.381 0.00 0.00 39.80 2.87
3433 5337 1.352687 GGGTTTCCTCCTGCTTTCTCT 59.647 52.381 0.00 0.00 0.00 3.10
3434 5338 2.616765 GGGTTTCCTCCTGCTTTCTCTC 60.617 54.545 0.00 0.00 0.00 3.20
3435 5339 2.616765 GGTTTCCTCCTGCTTTCTCTCC 60.617 54.545 0.00 0.00 0.00 3.71
3436 5340 1.280457 TTCCTCCTGCTTTCTCTCCC 58.720 55.000 0.00 0.00 0.00 4.30
3437 5341 0.415429 TCCTCCTGCTTTCTCTCCCT 59.585 55.000 0.00 0.00 0.00 4.20
3438 5342 1.646447 TCCTCCTGCTTTCTCTCCCTA 59.354 52.381 0.00 0.00 0.00 3.53
3439 5343 2.044492 TCCTCCTGCTTTCTCTCCCTAA 59.956 50.000 0.00 0.00 0.00 2.69
3440 5344 3.044894 CCTCCTGCTTTCTCTCCCTAAT 58.955 50.000 0.00 0.00 0.00 1.73
3441 5345 4.078571 TCCTCCTGCTTTCTCTCCCTAATA 60.079 45.833 0.00 0.00 0.00 0.98
3442 5346 4.656112 CCTCCTGCTTTCTCTCCCTAATAA 59.344 45.833 0.00 0.00 0.00 1.40
3443 5347 5.309282 CCTCCTGCTTTCTCTCCCTAATAAT 59.691 44.000 0.00 0.00 0.00 1.28
3444 5348 6.498651 CCTCCTGCTTTCTCTCCCTAATAATA 59.501 42.308 0.00 0.00 0.00 0.98
3445 5349 7.016661 CCTCCTGCTTTCTCTCCCTAATAATAA 59.983 40.741 0.00 0.00 0.00 1.40
3446 5350 8.331931 TCCTGCTTTCTCTCCCTAATAATAAA 57.668 34.615 0.00 0.00 0.00 1.40
3447 5351 8.432805 TCCTGCTTTCTCTCCCTAATAATAAAG 58.567 37.037 0.00 0.00 0.00 1.85
3448 5352 7.174080 CCTGCTTTCTCTCCCTAATAATAAAGC 59.826 40.741 0.00 0.00 44.76 3.51
3450 5354 7.866729 GCTTTCTCTCCCTAATAATAAAGCAC 58.133 38.462 10.61 0.00 44.23 4.40
3451 5355 7.307455 GCTTTCTCTCCCTAATAATAAAGCACG 60.307 40.741 10.61 0.00 44.23 5.34
3452 5356 6.097915 TCTCTCCCTAATAATAAAGCACGG 57.902 41.667 0.00 0.00 0.00 4.94
3453 5357 5.836898 TCTCTCCCTAATAATAAAGCACGGA 59.163 40.000 0.00 0.00 0.00 4.69
3454 5358 6.497259 TCTCTCCCTAATAATAAAGCACGGAT 59.503 38.462 0.00 0.00 0.00 4.18
3455 5359 7.016268 TCTCTCCCTAATAATAAAGCACGGATT 59.984 37.037 0.00 0.00 0.00 3.01
3456 5360 6.934645 TCTCCCTAATAATAAAGCACGGATTG 59.065 38.462 0.00 0.00 0.00 2.67
3457 5361 6.833041 TCCCTAATAATAAAGCACGGATTGA 58.167 36.000 0.00 0.00 0.00 2.57
3458 5362 6.708949 TCCCTAATAATAAAGCACGGATTGAC 59.291 38.462 0.00 0.00 0.00 3.18
3459 5363 6.710744 CCCTAATAATAAAGCACGGATTGACT 59.289 38.462 0.00 0.00 0.00 3.41
3460 5364 7.228706 CCCTAATAATAAAGCACGGATTGACTT 59.771 37.037 0.00 0.00 0.00 3.01
3461 5365 8.621286 CCTAATAATAAAGCACGGATTGACTTT 58.379 33.333 0.00 0.00 36.31 2.66
3462 5366 9.438291 CTAATAATAAAGCACGGATTGACTTTG 57.562 33.333 0.00 0.00 34.97 2.77
3463 5367 5.705609 AATAAAGCACGGATTGACTTTGT 57.294 34.783 0.00 0.00 34.97 2.83
3464 5368 3.626028 AAAGCACGGATTGACTTTGTC 57.374 42.857 0.00 0.00 33.18 3.18
3465 5369 1.148310 AGCACGGATTGACTTTGTCG 58.852 50.000 0.00 0.00 34.95 4.35
3466 5370 0.165944 GCACGGATTGACTTTGTCGG 59.834 55.000 0.00 0.00 34.95 4.79
3467 5371 0.796312 CACGGATTGACTTTGTCGGG 59.204 55.000 0.00 0.00 34.95 5.14
3468 5372 0.395312 ACGGATTGACTTTGTCGGGT 59.605 50.000 0.00 0.00 34.95 5.28
3469 5373 1.202722 ACGGATTGACTTTGTCGGGTT 60.203 47.619 0.00 0.00 34.95 4.11
3470 5374 1.877443 CGGATTGACTTTGTCGGGTTT 59.123 47.619 0.00 0.00 34.95 3.27
3471 5375 3.068560 CGGATTGACTTTGTCGGGTTTA 58.931 45.455 0.00 0.00 34.95 2.01
3472 5376 3.120442 CGGATTGACTTTGTCGGGTTTAC 60.120 47.826 0.00 0.00 34.95 2.01
3473 5377 3.189910 GGATTGACTTTGTCGGGTTTACC 59.810 47.826 0.00 0.00 34.95 2.85
3485 5389 2.958213 GGGTTTACCGTCACAATACGA 58.042 47.619 0.00 0.00 45.68 3.43
3486 5390 3.324993 GGGTTTACCGTCACAATACGAA 58.675 45.455 0.00 0.00 45.68 3.85
3487 5391 3.934579 GGGTTTACCGTCACAATACGAAT 59.065 43.478 0.00 0.00 45.68 3.34
3488 5392 4.392754 GGGTTTACCGTCACAATACGAATT 59.607 41.667 0.00 0.00 45.68 2.17
3489 5393 5.106594 GGGTTTACCGTCACAATACGAATTT 60.107 40.000 0.00 0.00 45.68 1.82
3490 5394 6.372981 GGTTTACCGTCACAATACGAATTTT 58.627 36.000 0.00 0.00 45.68 1.82
3491 5395 6.857451 GGTTTACCGTCACAATACGAATTTTT 59.143 34.615 0.00 0.00 45.68 1.94
3512 5416 7.687941 TTTTTGGAATAGCAGAGGTCTTAAG 57.312 36.000 0.00 0.00 0.00 1.85
3513 5417 5.359194 TTGGAATAGCAGAGGTCTTAAGG 57.641 43.478 1.85 0.00 0.00 2.69
3514 5418 4.620723 TGGAATAGCAGAGGTCTTAAGGA 58.379 43.478 1.85 0.00 0.00 3.36
3515 5419 4.406003 TGGAATAGCAGAGGTCTTAAGGAC 59.594 45.833 1.85 0.00 43.79 3.85
3516 5420 4.651962 GGAATAGCAGAGGTCTTAAGGACT 59.348 45.833 1.85 0.97 43.97 3.85
3517 5421 5.129650 GGAATAGCAGAGGTCTTAAGGACTT 59.870 44.000 1.85 0.00 43.97 3.01
3518 5422 3.971245 AGCAGAGGTCTTAAGGACTTG 57.029 47.619 1.85 4.54 43.97 3.16
3519 5423 2.569404 AGCAGAGGTCTTAAGGACTTGG 59.431 50.000 1.85 0.01 43.97 3.61
3520 5424 2.937433 GCAGAGGTCTTAAGGACTTGGC 60.937 54.545 1.85 5.73 43.97 4.52
3521 5425 2.569404 CAGAGGTCTTAAGGACTTGGCT 59.431 50.000 1.85 0.00 43.97 4.75
3522 5426 3.769844 CAGAGGTCTTAAGGACTTGGCTA 59.230 47.826 1.85 0.00 43.97 3.93
3523 5427 4.223032 CAGAGGTCTTAAGGACTTGGCTAA 59.777 45.833 1.85 0.00 43.97 3.09
3524 5428 4.468153 AGAGGTCTTAAGGACTTGGCTAAG 59.532 45.833 8.47 8.47 43.97 2.18
3525 5429 4.426704 AGGTCTTAAGGACTTGGCTAAGA 58.573 43.478 17.63 0.14 43.97 2.10
3526 5430 4.468153 AGGTCTTAAGGACTTGGCTAAGAG 59.532 45.833 17.63 2.20 43.97 2.85
3527 5431 4.466726 GGTCTTAAGGACTTGGCTAAGAGA 59.533 45.833 17.63 4.72 43.97 3.10
3528 5432 5.046520 GGTCTTAAGGACTTGGCTAAGAGAA 60.047 44.000 17.63 2.30 43.97 2.87
3529 5433 6.103330 GTCTTAAGGACTTGGCTAAGAGAAG 58.897 44.000 17.63 11.03 41.46 2.85
3530 5434 3.990959 AAGGACTTGGCTAAGAGAAGG 57.009 47.619 17.63 0.00 37.36 3.46
3531 5435 2.909217 AGGACTTGGCTAAGAGAAGGT 58.091 47.619 17.63 0.00 37.36 3.50
3532 5436 3.252351 AGGACTTGGCTAAGAGAAGGTT 58.748 45.455 17.63 0.00 37.36 3.50
3533 5437 3.653352 AGGACTTGGCTAAGAGAAGGTTT 59.347 43.478 17.63 0.00 37.36 3.27
3534 5438 4.004314 GGACTTGGCTAAGAGAAGGTTTC 58.996 47.826 17.63 0.58 37.36 2.78
3535 5439 4.263112 GGACTTGGCTAAGAGAAGGTTTCT 60.263 45.833 17.63 0.00 44.21 2.52
3536 5440 5.046520 GGACTTGGCTAAGAGAAGGTTTCTA 60.047 44.000 17.63 0.00 40.87 2.10
3537 5441 6.043854 ACTTGGCTAAGAGAAGGTTTCTAG 57.956 41.667 17.63 0.00 40.87 2.43
3538 5442 5.544562 ACTTGGCTAAGAGAAGGTTTCTAGT 59.455 40.000 17.63 0.00 40.87 2.57
3539 5443 6.043358 ACTTGGCTAAGAGAAGGTTTCTAGTT 59.957 38.462 17.63 0.00 40.87 2.24
3540 5444 5.794894 TGGCTAAGAGAAGGTTTCTAGTTG 58.205 41.667 0.00 0.00 40.87 3.16
3541 5445 5.542635 TGGCTAAGAGAAGGTTTCTAGTTGA 59.457 40.000 0.00 0.00 40.87 3.18
3542 5446 6.213600 TGGCTAAGAGAAGGTTTCTAGTTGAT 59.786 38.462 0.00 0.00 40.87 2.57
3543 5447 6.536941 GGCTAAGAGAAGGTTTCTAGTTGATG 59.463 42.308 0.00 0.00 40.87 3.07
3544 5448 6.036626 GCTAAGAGAAGGTTTCTAGTTGATGC 59.963 42.308 0.00 0.00 40.87 3.91
3545 5449 5.753721 AGAGAAGGTTTCTAGTTGATGCT 57.246 39.130 0.00 0.00 40.87 3.79
3546 5450 6.120507 AGAGAAGGTTTCTAGTTGATGCTT 57.879 37.500 0.00 0.00 40.87 3.91
3547 5451 6.169800 AGAGAAGGTTTCTAGTTGATGCTTC 58.830 40.000 0.00 0.00 40.87 3.86
3548 5452 4.932200 AGAAGGTTTCTAGTTGATGCTTCG 59.068 41.667 0.00 0.00 38.49 3.79
3549 5453 4.537135 AGGTTTCTAGTTGATGCTTCGA 57.463 40.909 0.00 0.00 0.00 3.71
3550 5454 5.091261 AGGTTTCTAGTTGATGCTTCGAT 57.909 39.130 0.00 0.00 0.00 3.59
3551 5455 6.222038 AGGTTTCTAGTTGATGCTTCGATA 57.778 37.500 0.00 0.00 0.00 2.92
3552 5456 6.276847 AGGTTTCTAGTTGATGCTTCGATAG 58.723 40.000 0.00 0.00 0.00 2.08
3571 5475 8.786826 TCGATAGAACACAAGTTGGATTTTAT 57.213 30.769 7.96 6.06 46.15 1.40
3572 5476 8.879759 TCGATAGAACACAAGTTGGATTTTATC 58.120 33.333 7.96 12.76 46.15 1.75
3573 5477 7.846107 CGATAGAACACAAGTTGGATTTTATCG 59.154 37.037 23.99 23.99 38.30 2.92
3574 5478 5.699839 AGAACACAAGTTGGATTTTATCGC 58.300 37.500 7.96 0.00 38.30 4.58
3575 5479 5.473504 AGAACACAAGTTGGATTTTATCGCT 59.526 36.000 7.96 0.00 38.30 4.93
3576 5480 6.653320 AGAACACAAGTTGGATTTTATCGCTA 59.347 34.615 7.96 0.00 38.30 4.26
3577 5481 7.336931 AGAACACAAGTTGGATTTTATCGCTAT 59.663 33.333 7.96 0.00 38.30 2.97
3578 5482 7.391148 ACACAAGTTGGATTTTATCGCTATT 57.609 32.000 7.96 0.00 0.00 1.73
3579 5483 7.826690 ACACAAGTTGGATTTTATCGCTATTT 58.173 30.769 7.96 0.00 0.00 1.40
3580 5484 7.968405 ACACAAGTTGGATTTTATCGCTATTTC 59.032 33.333 7.96 0.00 0.00 2.17
3581 5485 8.184192 CACAAGTTGGATTTTATCGCTATTTCT 58.816 33.333 7.96 0.00 0.00 2.52
3582 5486 8.184192 ACAAGTTGGATTTTATCGCTATTTCTG 58.816 33.333 7.96 0.00 0.00 3.02
3583 5487 8.397906 CAAGTTGGATTTTATCGCTATTTCTGA 58.602 33.333 0.00 0.00 0.00 3.27
3584 5488 8.147642 AGTTGGATTTTATCGCTATTTCTGAG 57.852 34.615 0.00 0.00 0.00 3.35
3585 5489 7.987458 AGTTGGATTTTATCGCTATTTCTGAGA 59.013 33.333 0.00 0.00 0.00 3.27
3586 5490 8.778358 GTTGGATTTTATCGCTATTTCTGAGAT 58.222 33.333 0.00 0.00 0.00 2.75
3587 5491 8.908786 TGGATTTTATCGCTATTTCTGAGATT 57.091 30.769 0.00 0.00 0.00 2.40
3588 5492 8.777413 TGGATTTTATCGCTATTTCTGAGATTG 58.223 33.333 0.00 0.00 0.00 2.67
3589 5493 8.233190 GGATTTTATCGCTATTTCTGAGATTGG 58.767 37.037 0.00 0.00 0.00 3.16
3590 5494 8.682936 ATTTTATCGCTATTTCTGAGATTGGT 57.317 30.769 0.00 0.00 0.00 3.67
3591 5495 9.778741 ATTTTATCGCTATTTCTGAGATTGGTA 57.221 29.630 0.00 0.00 0.00 3.25
3592 5496 8.818141 TTTATCGCTATTTCTGAGATTGGTAG 57.182 34.615 0.00 0.00 0.00 3.18
3593 5497 5.201713 TCGCTATTTCTGAGATTGGTAGG 57.798 43.478 0.00 0.00 0.00 3.18
3594 5498 4.039245 TCGCTATTTCTGAGATTGGTAGGG 59.961 45.833 0.00 0.00 0.00 3.53
3595 5499 4.039245 CGCTATTTCTGAGATTGGTAGGGA 59.961 45.833 0.00 0.00 0.00 4.20
3596 5500 5.301555 GCTATTTCTGAGATTGGTAGGGAC 58.698 45.833 0.00 0.00 0.00 4.46
3597 5501 5.163301 GCTATTTCTGAGATTGGTAGGGACA 60.163 44.000 0.00 0.00 0.00 4.02
3598 5502 5.779241 ATTTCTGAGATTGGTAGGGACAA 57.221 39.130 0.00 0.00 0.00 3.18
3599 5503 4.553330 TTCTGAGATTGGTAGGGACAAC 57.447 45.455 0.00 0.00 0.00 3.32
3600 5504 3.791320 TCTGAGATTGGTAGGGACAACT 58.209 45.455 0.00 0.00 0.00 3.16
3601 5505 4.168101 TCTGAGATTGGTAGGGACAACTT 58.832 43.478 0.00 0.00 0.00 2.66
3602 5506 4.223032 TCTGAGATTGGTAGGGACAACTTC 59.777 45.833 0.00 0.00 0.00 3.01
3603 5507 3.907474 TGAGATTGGTAGGGACAACTTCA 59.093 43.478 0.00 0.00 0.00 3.02
3604 5508 4.254492 GAGATTGGTAGGGACAACTTCAC 58.746 47.826 0.00 0.00 0.00 3.18
3605 5509 3.650942 AGATTGGTAGGGACAACTTCACA 59.349 43.478 0.00 0.00 0.00 3.58
3606 5510 2.922740 TGGTAGGGACAACTTCACAC 57.077 50.000 0.00 0.00 0.00 3.82
3607 5511 1.418637 TGGTAGGGACAACTTCACACC 59.581 52.381 0.00 0.00 32.34 4.16
3608 5512 1.271217 GGTAGGGACAACTTCACACCC 60.271 57.143 0.00 0.00 40.71 4.61
3609 5513 1.061546 TAGGGACAACTTCACACCCC 58.938 55.000 0.00 0.00 41.26 4.95
3610 5514 0.991355 AGGGACAACTTCACACCCCA 60.991 55.000 0.00 0.00 41.26 4.96
3611 5515 0.537371 GGGACAACTTCACACCCCAG 60.537 60.000 0.00 0.00 35.00 4.45
3612 5516 0.182775 GGACAACTTCACACCCCAGT 59.817 55.000 0.00 0.00 0.00 4.00
3613 5517 1.409661 GGACAACTTCACACCCCAGTT 60.410 52.381 0.00 0.00 0.00 3.16
3614 5518 2.375146 GACAACTTCACACCCCAGTTT 58.625 47.619 0.00 0.00 0.00 2.66
3615 5519 2.357952 GACAACTTCACACCCCAGTTTC 59.642 50.000 0.00 0.00 0.00 2.78
3616 5520 2.025321 ACAACTTCACACCCCAGTTTCT 60.025 45.455 0.00 0.00 0.00 2.52
3617 5521 2.348411 ACTTCACACCCCAGTTTCTG 57.652 50.000 0.00 0.00 0.00 3.02
3618 5522 1.843851 ACTTCACACCCCAGTTTCTGA 59.156 47.619 0.00 0.00 32.44 3.27
3619 5523 2.158755 ACTTCACACCCCAGTTTCTGAG 60.159 50.000 0.00 0.00 32.44 3.35
3620 5524 1.507140 TCACACCCCAGTTTCTGAGT 58.493 50.000 0.00 0.00 32.44 3.41
3621 5525 2.684943 TCACACCCCAGTTTCTGAGTA 58.315 47.619 0.00 0.00 32.44 2.59
3622 5526 2.367567 TCACACCCCAGTTTCTGAGTAC 59.632 50.000 0.00 0.00 32.44 2.73
3623 5527 2.368875 CACACCCCAGTTTCTGAGTACT 59.631 50.000 0.00 0.00 32.44 2.73
3624 5528 2.633481 ACACCCCAGTTTCTGAGTACTC 59.367 50.000 16.32 16.32 32.44 2.59
3625 5529 2.900546 CACCCCAGTTTCTGAGTACTCT 59.099 50.000 23.01 0.00 32.44 3.24
3626 5530 4.087182 CACCCCAGTTTCTGAGTACTCTA 58.913 47.826 23.01 9.20 32.44 2.43
3627 5531 4.712337 CACCCCAGTTTCTGAGTACTCTAT 59.288 45.833 23.01 1.00 32.44 1.98
3628 5532 4.957327 ACCCCAGTTTCTGAGTACTCTATC 59.043 45.833 23.01 9.51 32.44 2.08
3629 5533 4.036971 CCCCAGTTTCTGAGTACTCTATCG 59.963 50.000 23.01 9.50 32.44 2.92
3630 5534 4.036971 CCCAGTTTCTGAGTACTCTATCGG 59.963 50.000 23.01 13.40 32.44 4.18
3631 5535 4.036971 CCAGTTTCTGAGTACTCTATCGGG 59.963 50.000 23.01 14.01 32.44 5.14
3632 5536 4.882427 CAGTTTCTGAGTACTCTATCGGGA 59.118 45.833 23.01 9.11 32.44 5.14
3633 5537 5.008217 CAGTTTCTGAGTACTCTATCGGGAG 59.992 48.000 23.01 10.61 35.13 4.30
3634 5538 3.773418 TCTGAGTACTCTATCGGGAGG 57.227 52.381 23.01 3.55 37.63 4.30
3635 5539 3.047115 TCTGAGTACTCTATCGGGAGGT 58.953 50.000 23.01 0.00 37.63 3.85
3636 5540 3.142951 CTGAGTACTCTATCGGGAGGTG 58.857 54.545 23.01 0.00 37.63 4.00
3637 5541 2.508716 TGAGTACTCTATCGGGAGGTGT 59.491 50.000 23.01 0.00 37.63 4.16
3638 5542 2.879646 GAGTACTCTATCGGGAGGTGTG 59.120 54.545 15.91 0.00 37.63 3.82
3639 5543 1.955080 GTACTCTATCGGGAGGTGTGG 59.045 57.143 0.00 0.00 37.63 4.17
3640 5544 0.629596 ACTCTATCGGGAGGTGTGGA 59.370 55.000 0.00 0.00 37.63 4.02
3641 5545 1.033574 CTCTATCGGGAGGTGTGGAC 58.966 60.000 0.00 0.00 0.00 4.02
3642 5546 0.629596 TCTATCGGGAGGTGTGGACT 59.370 55.000 0.00 0.00 0.00 3.85
3643 5547 1.006758 TCTATCGGGAGGTGTGGACTT 59.993 52.381 0.00 0.00 0.00 3.01
3644 5548 1.831736 CTATCGGGAGGTGTGGACTTT 59.168 52.381 0.00 0.00 0.00 2.66
3645 5549 0.324943 ATCGGGAGGTGTGGACTTTG 59.675 55.000 0.00 0.00 0.00 2.77
3646 5550 0.761323 TCGGGAGGTGTGGACTTTGA 60.761 55.000 0.00 0.00 0.00 2.69
3647 5551 0.324943 CGGGAGGTGTGGACTTTGAT 59.675 55.000 0.00 0.00 0.00 2.57
3648 5552 1.271379 CGGGAGGTGTGGACTTTGATT 60.271 52.381 0.00 0.00 0.00 2.57
3649 5553 2.162681 GGGAGGTGTGGACTTTGATTG 58.837 52.381 0.00 0.00 0.00 2.67
3650 5554 2.162681 GGAGGTGTGGACTTTGATTGG 58.837 52.381 0.00 0.00 0.00 3.16
3651 5555 1.541588 GAGGTGTGGACTTTGATTGGC 59.458 52.381 0.00 0.00 0.00 4.52
3652 5556 1.133513 AGGTGTGGACTTTGATTGGCA 60.134 47.619 0.00 0.00 0.00 4.92
3653 5557 1.895131 GGTGTGGACTTTGATTGGCAT 59.105 47.619 0.00 0.00 0.00 4.40
3654 5558 2.299867 GGTGTGGACTTTGATTGGCATT 59.700 45.455 0.00 0.00 0.00 3.56
3655 5559 3.319755 GTGTGGACTTTGATTGGCATTG 58.680 45.455 0.00 0.00 0.00 2.82
3656 5560 2.964464 TGTGGACTTTGATTGGCATTGT 59.036 40.909 0.00 0.00 0.00 2.71
3657 5561 3.005684 TGTGGACTTTGATTGGCATTGTC 59.994 43.478 0.00 0.00 0.00 3.18
3658 5562 3.256631 GTGGACTTTGATTGGCATTGTCT 59.743 43.478 0.00 0.00 32.90 3.41
3659 5563 3.256383 TGGACTTTGATTGGCATTGTCTG 59.744 43.478 0.00 0.00 32.90 3.51
3668 5572 3.254629 GCATTGTCTGCCTCCAAGA 57.745 52.632 0.00 0.00 45.66 3.02
3669 5573 1.093159 GCATTGTCTGCCTCCAAGAG 58.907 55.000 0.00 0.00 45.66 2.85
3680 5584 1.490574 CTCCAAGAGGAAGATCCGGT 58.509 55.000 0.00 0.00 45.19 5.28
3681 5585 1.137872 CTCCAAGAGGAAGATCCGGTG 59.862 57.143 0.00 0.00 45.19 4.94
3682 5586 0.179000 CCAAGAGGAAGATCCGGTGG 59.821 60.000 0.00 0.00 42.75 4.61
3683 5587 0.179000 CAAGAGGAAGATCCGGTGGG 59.821 60.000 0.00 0.00 42.75 4.61
3694 5598 1.200519 TCCGGTGGGATTCTACTTGG 58.799 55.000 0.00 0.00 37.43 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.659063 GCCCTGCCCCCATTTTGTC 61.659 63.158 0.00 0.00 0.00 3.18
1 2 2.607442 GCCCTGCCCCCATTTTGT 60.607 61.111 0.00 0.00 0.00 2.83
2 3 1.776975 TTTGCCCTGCCCCCATTTTG 61.777 55.000 0.00 0.00 0.00 2.44
3 4 1.463018 TTTGCCCTGCCCCCATTTT 60.463 52.632 0.00 0.00 0.00 1.82
4 5 1.919816 CTTTGCCCTGCCCCCATTT 60.920 57.895 0.00 0.00 0.00 2.32
5 6 2.284847 CTTTGCCCTGCCCCCATT 60.285 61.111 0.00 0.00 0.00 3.16
11 12 3.688159 CTGGTGCTTTGCCCTGCC 61.688 66.667 0.00 0.00 0.00 4.85
12 13 4.368543 GCTGGTGCTTTGCCCTGC 62.369 66.667 10.88 10.88 36.99 4.85
13 14 4.047059 CGCTGGTGCTTTGCCCTG 62.047 66.667 0.00 0.00 36.97 4.45
278 285 2.897350 GCCGATTCTCCCCGCAAG 60.897 66.667 0.00 0.00 0.00 4.01
306 313 0.680921 CCACCAACCTGCCCATAGTG 60.681 60.000 0.00 0.00 0.00 2.74
309 316 2.358619 GCCACCAACCTGCCCATA 59.641 61.111 0.00 0.00 0.00 2.74
327 334 8.430063 CAATTTAGCAATAACTGAAGCAAACAG 58.570 33.333 0.00 0.00 40.68 3.16
330 337 7.095691 GCACAATTTAGCAATAACTGAAGCAAA 60.096 33.333 0.00 0.00 0.00 3.68
331 338 6.365789 GCACAATTTAGCAATAACTGAAGCAA 59.634 34.615 0.00 0.00 0.00 3.91
332 339 5.863397 GCACAATTTAGCAATAACTGAAGCA 59.137 36.000 0.00 0.00 0.00 3.91
348 355 3.042189 CACGAAATCACACGCACAATTT 58.958 40.909 0.00 0.00 0.00 1.82
376 383 3.058160 GCACAAGCGCCCTCACAT 61.058 61.111 2.29 0.00 0.00 3.21
436 452 1.154413 CGCACATTCCACGAACTGC 60.154 57.895 0.00 0.00 0.00 4.40
478 494 6.894339 AAAATCTCACCAAAAACGACCTAT 57.106 33.333 0.00 0.00 0.00 2.57
508 524 5.837438 ACAGTAGACTAACACTAAACCCACT 59.163 40.000 0.00 0.00 0.00 4.00
514 530 9.565090 TCAACTAGACAGTAGACTAACACTAAA 57.435 33.333 0.00 0.00 33.48 1.85
596 612 8.958506 AGTAAAACGTATCACATCTTCTCTAGT 58.041 33.333 0.00 0.00 0.00 2.57
597 613 9.227490 CAGTAAAACGTATCACATCTTCTCTAG 57.773 37.037 0.00 0.00 0.00 2.43
598 614 8.737175 ACAGTAAAACGTATCACATCTTCTCTA 58.263 33.333 0.00 0.00 0.00 2.43
653 669 5.762825 AGTATGAACATGACATTGGATGC 57.237 39.130 0.00 0.00 0.00 3.91
654 670 7.415229 CAGAAGTATGAACATGACATTGGATG 58.585 38.462 0.00 0.00 0.00 3.51
690 706 2.298610 TGCCTCCAGTGATCGTACTAG 58.701 52.381 0.00 0.00 0.00 2.57
695 2436 0.615331 ACATTGCCTCCAGTGATCGT 59.385 50.000 0.00 0.00 33.37 3.73
796 2538 7.487189 GGAAATCACTGTTCATGAATTGTCATC 59.513 37.037 12.12 8.75 42.88 2.92
824 2566 5.476599 CCCAAGATTCACCAATAGTTCAACA 59.523 40.000 0.00 0.00 0.00 3.33
939 2682 7.601886 CAGTATCAGAGACAATCACAAAAGAGT 59.398 37.037 0.00 0.00 0.00 3.24
978 2721 3.790091 TGATGATGAAGAAGAAGAGGCG 58.210 45.455 0.00 0.00 0.00 5.52
1062 2805 2.164624 CTCCTCTTGTGTAAGGTCCTCG 59.835 54.545 0.00 0.00 34.59 4.63
1140 2883 1.674221 GCAAGCTCACAATCGACCTCT 60.674 52.381 0.00 0.00 0.00 3.69
1541 3284 5.652891 TCCTCAAGACTAGTATCCACAAGAC 59.347 44.000 0.00 0.00 0.00 3.01
1687 3430 7.489160 TCTATAAGTTTAGCTCGCTTCAATGA 58.511 34.615 0.00 0.00 0.00 2.57
1763 3506 4.344968 AGCTAATTTCCACTGGTTTTGCTT 59.655 37.500 0.00 0.00 0.00 3.91
1771 3514 3.797039 TCGATGAGCTAATTTCCACTGG 58.203 45.455 0.00 0.00 0.00 4.00
1794 3537 3.624326 TGAAGGTGAAAAATGCGACTG 57.376 42.857 0.00 0.00 0.00 3.51
1799 3542 4.151157 GCACATCTTGAAGGTGAAAAATGC 59.849 41.667 13.17 7.32 42.26 3.56
1814 3557 3.642848 ACATTTTTCACCTGGCACATCTT 59.357 39.130 0.00 0.00 38.20 2.40
1824 3567 4.202212 GGTGGTTTGCTACATTTTTCACCT 60.202 41.667 0.00 0.00 39.06 4.00
1909 3652 2.766263 GGATCAGTCCTGGTGTATGACA 59.234 50.000 0.00 0.00 41.60 3.58
1910 3653 2.103263 GGGATCAGTCCTGGTGTATGAC 59.897 54.545 0.00 0.00 44.44 3.06
2045 3788 4.655963 TGAGCTTGAACTGCCTAAAGAAT 58.344 39.130 0.00 0.00 0.00 2.40
2081 3824 1.729586 AGTTTCTAGTGCACCCTCCA 58.270 50.000 14.63 0.00 0.00 3.86
2148 3891 2.489722 GTTGCCTGTTTTGAGATCCTCC 59.510 50.000 0.00 0.00 0.00 4.30
2207 3950 9.445878 CATCTGAATATGCTGTGATAGGTTTAT 57.554 33.333 0.00 0.00 0.00 1.40
2208 3951 8.650490 TCATCTGAATATGCTGTGATAGGTTTA 58.350 33.333 0.00 0.00 0.00 2.01
2493 4236 1.377536 GAGGTGCCTTCATCTTCAGC 58.622 55.000 0.00 0.00 32.83 4.26
2566 4309 1.228245 TGTGTGGCTTCCTCCTTGC 60.228 57.895 0.00 0.00 0.00 4.01
2850 4593 6.879400 ACAGGATTGTTATCTACTTGTCCTC 58.121 40.000 0.00 0.00 33.37 3.71
2919 4662 1.250328 TGCAGCAAAGAGTCATTGGG 58.750 50.000 9.94 0.00 0.00 4.12
3025 4768 2.277084 ACTGTGTTGACTGAACGGAAC 58.723 47.619 0.00 0.00 37.38 3.62
3112 4856 0.989890 CACGTAGAAACTACGCTGCC 59.010 55.000 24.48 0.00 43.97 4.85
3201 5105 9.403110 CAAATTTCAAATCTCGAATTCTGAACT 57.597 29.630 3.52 0.00 0.00 3.01
3265 5169 7.033185 GTGGCATGGTTTGGTTTATACTTTAG 58.967 38.462 0.00 0.00 0.00 1.85
3361 5265 4.327087 GCGCAACATAAAAAGAATTCAGGG 59.673 41.667 8.44 0.00 0.00 4.45
3405 5309 2.919228 CAGGAGGAAACCCTATTTCGG 58.081 52.381 0.00 0.00 33.25 4.30
3406 5310 2.092914 AGCAGGAGGAAACCCTATTTCG 60.093 50.000 0.00 0.00 33.25 3.46
3407 5311 3.653835 AGCAGGAGGAAACCCTATTTC 57.346 47.619 0.00 0.00 33.25 2.17
3408 5312 4.044698 AGAAAGCAGGAGGAAACCCTATTT 59.955 41.667 0.00 0.00 33.25 1.40
3409 5313 3.593780 AGAAAGCAGGAGGAAACCCTATT 59.406 43.478 0.00 0.00 33.25 1.73
3410 5314 3.193782 AGAAAGCAGGAGGAAACCCTAT 58.806 45.455 0.00 0.00 33.25 2.57
3411 5315 2.572104 GAGAAAGCAGGAGGAAACCCTA 59.428 50.000 0.00 0.00 33.25 3.53
3412 5316 1.352687 GAGAAAGCAGGAGGAAACCCT 59.647 52.381 0.00 0.00 36.57 4.34
3413 5317 1.352687 AGAGAAAGCAGGAGGAAACCC 59.647 52.381 0.00 0.00 0.00 4.11
3414 5318 2.616765 GGAGAGAAAGCAGGAGGAAACC 60.617 54.545 0.00 0.00 0.00 3.27
3415 5319 2.616765 GGGAGAGAAAGCAGGAGGAAAC 60.617 54.545 0.00 0.00 0.00 2.78
3416 5320 1.630878 GGGAGAGAAAGCAGGAGGAAA 59.369 52.381 0.00 0.00 0.00 3.13
3417 5321 1.203364 AGGGAGAGAAAGCAGGAGGAA 60.203 52.381 0.00 0.00 0.00 3.36
3418 5322 0.415429 AGGGAGAGAAAGCAGGAGGA 59.585 55.000 0.00 0.00 0.00 3.71
3419 5323 2.166907 TAGGGAGAGAAAGCAGGAGG 57.833 55.000 0.00 0.00 0.00 4.30
3420 5324 5.878406 TTATTAGGGAGAGAAAGCAGGAG 57.122 43.478 0.00 0.00 0.00 3.69
3421 5325 7.931015 TTATTATTAGGGAGAGAAAGCAGGA 57.069 36.000 0.00 0.00 0.00 3.86
3422 5326 7.174080 GCTTTATTATTAGGGAGAGAAAGCAGG 59.826 40.741 10.29 0.00 44.29 4.85
3423 5327 8.093659 GCTTTATTATTAGGGAGAGAAAGCAG 57.906 38.462 10.29 0.00 44.29 4.24
3425 5329 7.307455 CGTGCTTTATTATTAGGGAGAGAAAGC 60.307 40.741 8.65 8.65 44.83 3.51
3426 5330 7.171678 CCGTGCTTTATTATTAGGGAGAGAAAG 59.828 40.741 0.00 0.00 0.00 2.62
3427 5331 6.990349 CCGTGCTTTATTATTAGGGAGAGAAA 59.010 38.462 0.00 0.00 0.00 2.52
3428 5332 6.325545 TCCGTGCTTTATTATTAGGGAGAGAA 59.674 38.462 0.00 0.00 0.00 2.87
3429 5333 5.836898 TCCGTGCTTTATTATTAGGGAGAGA 59.163 40.000 0.00 0.00 0.00 3.10
3430 5334 6.097915 TCCGTGCTTTATTATTAGGGAGAG 57.902 41.667 0.00 0.00 0.00 3.20
3431 5335 6.681729 ATCCGTGCTTTATTATTAGGGAGA 57.318 37.500 0.00 0.00 0.00 3.71
3432 5336 6.934645 TCAATCCGTGCTTTATTATTAGGGAG 59.065 38.462 0.00 0.00 0.00 4.30
3433 5337 6.708949 GTCAATCCGTGCTTTATTATTAGGGA 59.291 38.462 0.00 0.00 0.00 4.20
3434 5338 6.710744 AGTCAATCCGTGCTTTATTATTAGGG 59.289 38.462 0.00 0.00 0.00 3.53
3435 5339 7.730364 AGTCAATCCGTGCTTTATTATTAGG 57.270 36.000 0.00 0.00 0.00 2.69
3436 5340 9.438291 CAAAGTCAATCCGTGCTTTATTATTAG 57.562 33.333 0.00 0.00 34.13 1.73
3437 5341 8.952278 ACAAAGTCAATCCGTGCTTTATTATTA 58.048 29.630 0.00 0.00 34.13 0.98
3438 5342 7.826690 ACAAAGTCAATCCGTGCTTTATTATT 58.173 30.769 0.00 0.00 34.13 1.40
3439 5343 7.391148 ACAAAGTCAATCCGTGCTTTATTAT 57.609 32.000 0.00 0.00 34.13 1.28
3440 5344 6.401688 CGACAAAGTCAATCCGTGCTTTATTA 60.402 38.462 0.00 0.00 34.13 0.98
3441 5345 5.616866 CGACAAAGTCAATCCGTGCTTTATT 60.617 40.000 0.00 0.00 34.13 1.40
3442 5346 4.142902 CGACAAAGTCAATCCGTGCTTTAT 60.143 41.667 0.00 0.00 34.13 1.40
3443 5347 3.185594 CGACAAAGTCAATCCGTGCTTTA 59.814 43.478 0.00 0.00 34.13 1.85
3444 5348 2.032030 CGACAAAGTCAATCCGTGCTTT 60.032 45.455 0.00 0.00 35.37 3.51
3445 5349 1.531149 CGACAAAGTCAATCCGTGCTT 59.469 47.619 0.00 0.00 32.09 3.91
3446 5350 1.148310 CGACAAAGTCAATCCGTGCT 58.852 50.000 0.00 0.00 32.09 4.40
3447 5351 0.165944 CCGACAAAGTCAATCCGTGC 59.834 55.000 0.00 0.00 32.09 5.34
3448 5352 0.796312 CCCGACAAAGTCAATCCGTG 59.204 55.000 0.00 0.00 32.09 4.94
3449 5353 0.395312 ACCCGACAAAGTCAATCCGT 59.605 50.000 0.00 0.00 32.09 4.69
3450 5354 1.519408 AACCCGACAAAGTCAATCCG 58.481 50.000 0.00 0.00 32.09 4.18
3451 5355 3.189910 GGTAAACCCGACAAAGTCAATCC 59.810 47.826 0.00 0.00 32.09 3.01
3452 5356 4.414999 GGTAAACCCGACAAAGTCAATC 57.585 45.455 0.00 0.00 32.09 2.67
3465 5369 2.958213 TCGTATTGTGACGGTAAACCC 58.042 47.619 0.00 0.00 43.12 4.11
3466 5370 5.535043 AATTCGTATTGTGACGGTAAACC 57.465 39.130 0.00 0.00 43.12 3.27
3467 5371 7.840981 AAAAATTCGTATTGTGACGGTAAAC 57.159 32.000 0.00 0.00 43.12 2.01
3488 5392 6.659242 CCTTAAGACCTCTGCTATTCCAAAAA 59.341 38.462 3.36 0.00 0.00 1.94
3489 5393 6.012858 TCCTTAAGACCTCTGCTATTCCAAAA 60.013 38.462 3.36 0.00 0.00 2.44
3490 5394 5.487488 TCCTTAAGACCTCTGCTATTCCAAA 59.513 40.000 3.36 0.00 0.00 3.28
3491 5395 5.030147 TCCTTAAGACCTCTGCTATTCCAA 58.970 41.667 3.36 0.00 0.00 3.53
3492 5396 4.406003 GTCCTTAAGACCTCTGCTATTCCA 59.594 45.833 3.36 0.00 39.84 3.53
3493 5397 4.951254 GTCCTTAAGACCTCTGCTATTCC 58.049 47.826 3.36 0.00 39.84 3.01
3505 5409 5.662674 TCTCTTAGCCAAGTCCTTAAGAC 57.337 43.478 3.36 0.56 46.71 3.01
3506 5410 5.187967 CCTTCTCTTAGCCAAGTCCTTAAGA 59.812 44.000 3.36 0.00 33.20 2.10
3507 5411 5.046231 ACCTTCTCTTAGCCAAGTCCTTAAG 60.046 44.000 0.00 0.00 33.20 1.85
3508 5412 4.844655 ACCTTCTCTTAGCCAAGTCCTTAA 59.155 41.667 0.00 0.00 33.20 1.85
3509 5413 4.426704 ACCTTCTCTTAGCCAAGTCCTTA 58.573 43.478 0.00 0.00 33.20 2.69
3510 5414 3.252351 ACCTTCTCTTAGCCAAGTCCTT 58.748 45.455 0.00 0.00 33.20 3.36
3511 5415 2.909217 ACCTTCTCTTAGCCAAGTCCT 58.091 47.619 0.00 0.00 33.20 3.85
3512 5416 3.704800 AACCTTCTCTTAGCCAAGTCC 57.295 47.619 0.00 0.00 33.20 3.85
3513 5417 4.900684 AGAAACCTTCTCTTAGCCAAGTC 58.099 43.478 0.00 0.00 34.07 3.01
3514 5418 4.984146 AGAAACCTTCTCTTAGCCAAGT 57.016 40.909 0.00 0.00 34.07 3.16
3515 5419 6.043854 ACTAGAAACCTTCTCTTAGCCAAG 57.956 41.667 0.00 0.00 41.14 3.61
3516 5420 6.042781 TCAACTAGAAACCTTCTCTTAGCCAA 59.957 38.462 0.00 0.00 41.14 4.52
3517 5421 5.542635 TCAACTAGAAACCTTCTCTTAGCCA 59.457 40.000 0.00 0.00 41.14 4.75
3518 5422 6.038997 TCAACTAGAAACCTTCTCTTAGCC 57.961 41.667 0.00 0.00 41.14 3.93
3519 5423 6.036626 GCATCAACTAGAAACCTTCTCTTAGC 59.963 42.308 0.00 0.00 41.14 3.09
3520 5424 7.327214 AGCATCAACTAGAAACCTTCTCTTAG 58.673 38.462 0.00 0.00 41.14 2.18
3521 5425 7.246171 AGCATCAACTAGAAACCTTCTCTTA 57.754 36.000 0.00 0.00 41.14 2.10
3522 5426 6.120507 AGCATCAACTAGAAACCTTCTCTT 57.879 37.500 0.00 0.00 41.14 2.85
3523 5427 5.753721 AGCATCAACTAGAAACCTTCTCT 57.246 39.130 0.00 0.00 41.14 3.10
3524 5428 5.062809 CGAAGCATCAACTAGAAACCTTCTC 59.937 44.000 0.00 0.00 41.14 2.87
3525 5429 4.932200 CGAAGCATCAACTAGAAACCTTCT 59.068 41.667 0.00 0.00 43.72 2.85
3526 5430 4.929808 TCGAAGCATCAACTAGAAACCTTC 59.070 41.667 0.00 0.27 0.00 3.46
3527 5431 4.894784 TCGAAGCATCAACTAGAAACCTT 58.105 39.130 0.00 0.00 0.00 3.50
3528 5432 4.537135 TCGAAGCATCAACTAGAAACCT 57.463 40.909 0.00 0.00 0.00 3.50
3529 5433 6.273825 TCTATCGAAGCATCAACTAGAAACC 58.726 40.000 0.00 0.00 0.00 3.27
3530 5434 7.275779 TGTTCTATCGAAGCATCAACTAGAAAC 59.724 37.037 0.00 0.00 29.04 2.78
3531 5435 7.275779 GTGTTCTATCGAAGCATCAACTAGAAA 59.724 37.037 0.00 0.00 29.04 2.52
3532 5436 6.752351 GTGTTCTATCGAAGCATCAACTAGAA 59.248 38.462 0.00 0.00 0.00 2.10
3533 5437 6.127730 TGTGTTCTATCGAAGCATCAACTAGA 60.128 38.462 0.00 0.00 0.00 2.43
3534 5438 6.036470 TGTGTTCTATCGAAGCATCAACTAG 58.964 40.000 0.00 0.00 0.00 2.57
3535 5439 5.961272 TGTGTTCTATCGAAGCATCAACTA 58.039 37.500 0.00 0.00 0.00 2.24
3536 5440 4.820897 TGTGTTCTATCGAAGCATCAACT 58.179 39.130 0.00 0.00 0.00 3.16
3537 5441 5.120830 ACTTGTGTTCTATCGAAGCATCAAC 59.879 40.000 0.00 0.00 0.00 3.18
3538 5442 5.237815 ACTTGTGTTCTATCGAAGCATCAA 58.762 37.500 0.00 0.00 0.00 2.57
3539 5443 4.820897 ACTTGTGTTCTATCGAAGCATCA 58.179 39.130 0.00 0.00 0.00 3.07
3540 5444 5.446473 CCAACTTGTGTTCTATCGAAGCATC 60.446 44.000 0.00 0.00 33.52 3.91
3541 5445 4.393062 CCAACTTGTGTTCTATCGAAGCAT 59.607 41.667 0.00 0.00 33.52 3.79
3542 5446 3.745975 CCAACTTGTGTTCTATCGAAGCA 59.254 43.478 0.00 0.00 33.52 3.91
3543 5447 3.994392 TCCAACTTGTGTTCTATCGAAGC 59.006 43.478 0.00 0.00 33.52 3.86
3544 5448 6.727824 AATCCAACTTGTGTTCTATCGAAG 57.272 37.500 0.00 0.00 33.52 3.79
3545 5449 7.504924 AAAATCCAACTTGTGTTCTATCGAA 57.495 32.000 0.00 0.00 33.52 3.71
3546 5450 8.786826 ATAAAATCCAACTTGTGTTCTATCGA 57.213 30.769 0.00 0.00 33.52 3.59
3547 5451 7.846107 CGATAAAATCCAACTTGTGTTCTATCG 59.154 37.037 0.00 0.00 33.52 2.92
3548 5452 7.640240 GCGATAAAATCCAACTTGTGTTCTATC 59.360 37.037 0.00 0.00 33.52 2.08
3549 5453 7.336931 AGCGATAAAATCCAACTTGTGTTCTAT 59.663 33.333 0.00 0.00 33.52 1.98
3550 5454 6.653320 AGCGATAAAATCCAACTTGTGTTCTA 59.347 34.615 0.00 0.00 33.52 2.10
3551 5455 5.473504 AGCGATAAAATCCAACTTGTGTTCT 59.526 36.000 0.00 0.00 33.52 3.01
3552 5456 5.699839 AGCGATAAAATCCAACTTGTGTTC 58.300 37.500 0.00 0.00 33.52 3.18
3553 5457 5.705609 AGCGATAAAATCCAACTTGTGTT 57.294 34.783 0.00 0.00 36.75 3.32
3554 5458 7.391148 AATAGCGATAAAATCCAACTTGTGT 57.609 32.000 0.00 0.00 0.00 3.72
3555 5459 8.184192 AGAAATAGCGATAAAATCCAACTTGTG 58.816 33.333 0.00 0.00 0.00 3.33
3556 5460 8.184192 CAGAAATAGCGATAAAATCCAACTTGT 58.816 33.333 0.00 0.00 0.00 3.16
3557 5461 8.397906 TCAGAAATAGCGATAAAATCCAACTTG 58.602 33.333 0.00 0.00 0.00 3.16
3558 5462 8.506168 TCAGAAATAGCGATAAAATCCAACTT 57.494 30.769 0.00 0.00 0.00 2.66
3559 5463 7.987458 TCTCAGAAATAGCGATAAAATCCAACT 59.013 33.333 0.00 0.00 0.00 3.16
3560 5464 8.142994 TCTCAGAAATAGCGATAAAATCCAAC 57.857 34.615 0.00 0.00 0.00 3.77
3561 5465 8.908786 ATCTCAGAAATAGCGATAAAATCCAA 57.091 30.769 0.00 0.00 0.00 3.53
3562 5466 8.777413 CAATCTCAGAAATAGCGATAAAATCCA 58.223 33.333 0.00 0.00 0.00 3.41
3563 5467 8.233190 CCAATCTCAGAAATAGCGATAAAATCC 58.767 37.037 0.00 0.00 0.00 3.01
3564 5468 8.778358 ACCAATCTCAGAAATAGCGATAAAATC 58.222 33.333 0.00 0.00 0.00 2.17
3565 5469 8.682936 ACCAATCTCAGAAATAGCGATAAAAT 57.317 30.769 0.00 0.00 0.00 1.82
3566 5470 9.261180 CTACCAATCTCAGAAATAGCGATAAAA 57.739 33.333 0.00 0.00 0.00 1.52
3567 5471 7.872993 CCTACCAATCTCAGAAATAGCGATAAA 59.127 37.037 0.00 0.00 0.00 1.40
3568 5472 7.378966 CCTACCAATCTCAGAAATAGCGATAA 58.621 38.462 0.00 0.00 0.00 1.75
3569 5473 6.071334 CCCTACCAATCTCAGAAATAGCGATA 60.071 42.308 0.00 0.00 0.00 2.92
3570 5474 5.279708 CCCTACCAATCTCAGAAATAGCGAT 60.280 44.000 0.00 0.00 0.00 4.58
3571 5475 4.039245 CCCTACCAATCTCAGAAATAGCGA 59.961 45.833 0.00 0.00 0.00 4.93
3572 5476 4.039245 TCCCTACCAATCTCAGAAATAGCG 59.961 45.833 0.00 0.00 0.00 4.26
3573 5477 5.163301 TGTCCCTACCAATCTCAGAAATAGC 60.163 44.000 0.00 0.00 0.00 2.97
3574 5478 6.485830 TGTCCCTACCAATCTCAGAAATAG 57.514 41.667 0.00 0.00 0.00 1.73
3575 5479 6.443849 AGTTGTCCCTACCAATCTCAGAAATA 59.556 38.462 0.00 0.00 0.00 1.40
3576 5480 5.251700 AGTTGTCCCTACCAATCTCAGAAAT 59.748 40.000 0.00 0.00 0.00 2.17
3577 5481 4.597507 AGTTGTCCCTACCAATCTCAGAAA 59.402 41.667 0.00 0.00 0.00 2.52
3578 5482 4.168101 AGTTGTCCCTACCAATCTCAGAA 58.832 43.478 0.00 0.00 0.00 3.02
3579 5483 3.791320 AGTTGTCCCTACCAATCTCAGA 58.209 45.455 0.00 0.00 0.00 3.27
3580 5484 4.020218 TGAAGTTGTCCCTACCAATCTCAG 60.020 45.833 0.00 0.00 0.00 3.35
3581 5485 3.907474 TGAAGTTGTCCCTACCAATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
3582 5486 4.254492 GTGAAGTTGTCCCTACCAATCTC 58.746 47.826 0.00 0.00 0.00 2.75
3583 5487 3.650942 TGTGAAGTTGTCCCTACCAATCT 59.349 43.478 0.00 0.00 0.00 2.40
3584 5488 3.751698 GTGTGAAGTTGTCCCTACCAATC 59.248 47.826 0.00 0.00 0.00 2.67
3585 5489 3.497942 GGTGTGAAGTTGTCCCTACCAAT 60.498 47.826 0.00 0.00 0.00 3.16
3586 5490 2.158726 GGTGTGAAGTTGTCCCTACCAA 60.159 50.000 0.00 0.00 0.00 3.67
3587 5491 1.418637 GGTGTGAAGTTGTCCCTACCA 59.581 52.381 0.00 0.00 0.00 3.25
3588 5492 1.271217 GGGTGTGAAGTTGTCCCTACC 60.271 57.143 0.00 0.00 35.63 3.18
3589 5493 1.271217 GGGGTGTGAAGTTGTCCCTAC 60.271 57.143 0.00 0.00 38.31 3.18
3590 5494 1.061546 GGGGTGTGAAGTTGTCCCTA 58.938 55.000 0.00 0.00 38.31 3.53
3591 5495 0.991355 TGGGGTGTGAAGTTGTCCCT 60.991 55.000 0.00 0.00 38.31 4.20
3592 5496 0.537371 CTGGGGTGTGAAGTTGTCCC 60.537 60.000 0.00 0.00 37.59 4.46
3593 5497 0.182775 ACTGGGGTGTGAAGTTGTCC 59.817 55.000 0.00 0.00 0.00 4.02
3594 5498 2.052782 AACTGGGGTGTGAAGTTGTC 57.947 50.000 0.00 0.00 33.01 3.18
3595 5499 2.025321 AGAAACTGGGGTGTGAAGTTGT 60.025 45.455 0.00 0.00 34.46 3.32
3596 5500 2.358898 CAGAAACTGGGGTGTGAAGTTG 59.641 50.000 0.00 0.00 34.46 3.16
3597 5501 2.241176 TCAGAAACTGGGGTGTGAAGTT 59.759 45.455 0.00 0.00 35.70 2.66
3598 5502 1.843851 TCAGAAACTGGGGTGTGAAGT 59.156 47.619 0.00 0.00 31.51 3.01
3599 5503 2.158755 ACTCAGAAACTGGGGTGTGAAG 60.159 50.000 3.70 0.00 36.05 3.02
3600 5504 1.843851 ACTCAGAAACTGGGGTGTGAA 59.156 47.619 3.70 0.00 36.05 3.18
3601 5505 1.507140 ACTCAGAAACTGGGGTGTGA 58.493 50.000 3.70 0.00 36.05 3.58
3602 5506 2.368875 AGTACTCAGAAACTGGGGTGTG 59.631 50.000 3.70 0.00 36.05 3.82
3603 5507 2.633481 GAGTACTCAGAAACTGGGGTGT 59.367 50.000 18.20 0.09 36.05 4.16
3604 5508 2.900546 AGAGTACTCAGAAACTGGGGTG 59.099 50.000 24.44 0.00 36.05 4.61
3605 5509 3.261818 AGAGTACTCAGAAACTGGGGT 57.738 47.619 24.44 0.00 36.05 4.95
3606 5510 4.036971 CGATAGAGTACTCAGAAACTGGGG 59.963 50.000 24.44 0.00 35.10 4.96
3607 5511 4.036971 CCGATAGAGTACTCAGAAACTGGG 59.963 50.000 24.44 10.25 36.55 4.45
3608 5512 4.036971 CCCGATAGAGTACTCAGAAACTGG 59.963 50.000 24.44 14.90 39.76 4.00
3609 5513 4.882427 TCCCGATAGAGTACTCAGAAACTG 59.118 45.833 24.44 7.60 39.76 3.16
3610 5514 5.113446 TCCCGATAGAGTACTCAGAAACT 57.887 43.478 24.44 5.51 39.76 2.66
3611 5515 4.276431 CCTCCCGATAGAGTACTCAGAAAC 59.724 50.000 24.44 9.85 39.76 2.78
3612 5516 4.079901 ACCTCCCGATAGAGTACTCAGAAA 60.080 45.833 24.44 7.58 39.76 2.52
3613 5517 3.458857 ACCTCCCGATAGAGTACTCAGAA 59.541 47.826 24.44 10.04 39.76 3.02
3614 5518 3.047115 ACCTCCCGATAGAGTACTCAGA 58.953 50.000 24.44 12.38 39.76 3.27
3615 5519 3.142951 CACCTCCCGATAGAGTACTCAG 58.857 54.545 24.44 10.87 39.76 3.35
3616 5520 2.508716 ACACCTCCCGATAGAGTACTCA 59.491 50.000 24.44 11.06 39.76 3.41
3617 5521 2.879646 CACACCTCCCGATAGAGTACTC 59.120 54.545 15.41 15.41 39.76 2.59
3618 5522 2.423088 CCACACCTCCCGATAGAGTACT 60.423 54.545 0.00 0.00 39.76 2.73
3619 5523 1.955080 CCACACCTCCCGATAGAGTAC 59.045 57.143 0.00 0.00 39.76 2.73
3620 5524 1.848388 TCCACACCTCCCGATAGAGTA 59.152 52.381 0.00 0.00 39.76 2.59
3621 5525 0.629596 TCCACACCTCCCGATAGAGT 59.370 55.000 0.00 0.00 39.76 3.24
3622 5526 1.033574 GTCCACACCTCCCGATAGAG 58.966 60.000 0.00 0.00 39.76 2.43
3623 5527 0.629596 AGTCCACACCTCCCGATAGA 59.370 55.000 0.00 0.00 39.76 1.98
3624 5528 1.486211 AAGTCCACACCTCCCGATAG 58.514 55.000 0.00 0.00 0.00 2.08
3625 5529 1.553248 CAAAGTCCACACCTCCCGATA 59.447 52.381 0.00 0.00 0.00 2.92
3626 5530 0.324943 CAAAGTCCACACCTCCCGAT 59.675 55.000 0.00 0.00 0.00 4.18
3627 5531 0.761323 TCAAAGTCCACACCTCCCGA 60.761 55.000 0.00 0.00 0.00 5.14
3628 5532 0.324943 ATCAAAGTCCACACCTCCCG 59.675 55.000 0.00 0.00 0.00 5.14
3629 5533 2.162681 CAATCAAAGTCCACACCTCCC 58.837 52.381 0.00 0.00 0.00 4.30
3630 5534 2.162681 CCAATCAAAGTCCACACCTCC 58.837 52.381 0.00 0.00 0.00 4.30
3631 5535 1.541588 GCCAATCAAAGTCCACACCTC 59.458 52.381 0.00 0.00 0.00 3.85
3632 5536 1.133513 TGCCAATCAAAGTCCACACCT 60.134 47.619 0.00 0.00 0.00 4.00
3633 5537 1.327303 TGCCAATCAAAGTCCACACC 58.673 50.000 0.00 0.00 0.00 4.16
3634 5538 3.243839 ACAATGCCAATCAAAGTCCACAC 60.244 43.478 0.00 0.00 0.00 3.82
3635 5539 2.964464 ACAATGCCAATCAAAGTCCACA 59.036 40.909 0.00 0.00 0.00 4.17
3636 5540 3.256631 AGACAATGCCAATCAAAGTCCAC 59.743 43.478 0.00 0.00 34.83 4.02
3637 5541 3.256383 CAGACAATGCCAATCAAAGTCCA 59.744 43.478 0.00 0.00 34.83 4.02
3638 5542 3.841643 CAGACAATGCCAATCAAAGTCC 58.158 45.455 0.00 0.00 34.83 3.85
3650 5554 2.286158 CCTCTTGGAGGCAGACAATGC 61.286 57.143 0.34 0.00 43.29 3.56
3651 5555 1.747709 CCTCTTGGAGGCAGACAATG 58.252 55.000 0.34 0.00 43.29 2.82
3652 5556 4.334821 TCTTCCTCTTGGAGGCAGACAAT 61.335 47.826 10.89 0.00 44.61 2.71
3653 5557 3.026575 TCTTCCTCTTGGAGGCAGACAA 61.027 50.000 10.89 0.00 44.61 3.18
3654 5558 1.483118 TCTTCCTCTTGGAGGCAGACA 60.483 52.381 10.89 0.00 44.61 3.41
3655 5559 1.270907 TCTTCCTCTTGGAGGCAGAC 58.729 55.000 10.89 0.00 44.61 3.51
3656 5560 3.794786 TCTTCCTCTTGGAGGCAGA 57.205 52.632 10.89 10.89 46.57 4.26
3661 5565 1.137872 CACCGGATCTTCCTCTTGGAG 59.862 57.143 9.46 0.00 44.24 3.86
3662 5566 1.195115 CACCGGATCTTCCTCTTGGA 58.805 55.000 9.46 0.00 41.36 3.53
3663 5567 0.179000 CCACCGGATCTTCCTCTTGG 59.821 60.000 9.46 0.00 33.30 3.61
3664 5568 0.179000 CCCACCGGATCTTCCTCTTG 59.821 60.000 9.46 0.00 33.30 3.02
3665 5569 0.042731 TCCCACCGGATCTTCCTCTT 59.957 55.000 9.46 0.00 33.30 2.85
3666 5570 0.266152 ATCCCACCGGATCTTCCTCT 59.734 55.000 9.46 0.00 46.77 3.69
3667 5571 2.841595 ATCCCACCGGATCTTCCTC 58.158 57.895 9.46 0.00 46.77 3.71
3675 5579 1.200519 CCAAGTAGAATCCCACCGGA 58.799 55.000 9.46 0.00 44.33 5.14
3676 5580 3.780624 CCAAGTAGAATCCCACCGG 57.219 57.895 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.