Multiple sequence alignment - TraesCS7A01G240000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G240000 chr7A 100.000 6313 0 0 1 6313 214859986 214853674 0.000000e+00 11659.0
1 TraesCS7A01G240000 chr7A 90.000 50 4 1 6262 6311 425569146 425569098 5.280000e-06 63.9
2 TraesCS7A01G240000 chr7A 88.235 51 4 2 6262 6311 300053220 300053171 6.830000e-05 60.2
3 TraesCS7A01G240000 chr7B 92.077 4392 235 54 1683 6017 166770861 166775196 0.000000e+00 6078.0
4 TraesCS7A01G240000 chr7B 89.735 1169 57 20 489 1634 166769329 166770457 0.000000e+00 1435.0
5 TraesCS7A01G240000 chr7B 89.179 268 26 2 1 268 166768651 166768915 1.310000e-86 331.0
6 TraesCS7A01G240000 chr7B 85.526 152 10 8 309 456 166769182 166769325 1.420000e-31 148.0
7 TraesCS7A01G240000 chr7B 80.588 170 24 2 6111 6280 7039603 7039443 8.590000e-24 122.0
8 TraesCS7A01G240000 chr7D 91.642 3673 179 49 516 4121 203040184 203043795 0.000000e+00 4964.0
9 TraesCS7A01G240000 chr7D 94.576 885 41 5 4111 4990 203044694 203045576 0.000000e+00 1362.0
10 TraesCS7A01G240000 chr7D 90.084 948 56 18 5077 6021 203045714 203046626 0.000000e+00 1195.0
11 TraesCS7A01G240000 chr7D 94.167 240 11 3 84 322 203039774 203040011 4.650000e-96 363.0
12 TraesCS7A01G240000 chr7D 97.541 122 3 0 316 437 203040033 203040154 6.410000e-50 209.0
13 TraesCS7A01G240000 chr3A 87.544 281 34 1 3618 3898 156128772 156128493 2.200000e-84 324.0
14 TraesCS7A01G240000 chr3A 85.207 169 16 3 6111 6279 15557720 15557561 1.410000e-36 165.0
15 TraesCS7A01G240000 chr6B 85.375 253 27 9 3931 4182 148827050 148827293 2.920000e-63 254.0
16 TraesCS7A01G240000 chr6B 92.929 99 4 2 3795 3892 148826957 148827053 2.370000e-29 141.0
17 TraesCS7A01G240000 chr6B 84.127 63 6 3 6250 6309 150796878 150796939 2.460000e-04 58.4
18 TraesCS7A01G240000 chr3D 83.203 256 28 12 3931 4185 575924245 575924004 2.960000e-53 220.0
19 TraesCS7A01G240000 chr3D 90.196 102 7 2 3798 3898 575924335 575924236 5.140000e-26 130.0
20 TraesCS7A01G240000 chr2D 81.250 240 30 13 3946 4182 44703100 44703327 5.030000e-41 180.0
21 TraesCS7A01G240000 chr2D 88.393 112 13 0 6111 6222 8326413 8326524 1.100000e-27 135.0
22 TraesCS7A01G240000 chr3B 85.629 167 16 3 6113 6279 661859295 661859137 1.090000e-37 169.0
23 TraesCS7A01G240000 chr5B 83.432 169 20 2 6111 6279 26611970 26612130 3.940000e-32 150.0
24 TraesCS7A01G240000 chr5D 83.735 166 18 4 6111 6274 379580230 379580388 1.420000e-31 148.0
25 TraesCS7A01G240000 chr5D 81.935 155 20 2 6111 6265 208533145 208532999 2.390000e-24 124.0
26 TraesCS7A01G240000 chr1D 87.273 110 14 0 6113 6222 403547492 403547383 6.640000e-25 126.0
27 TraesCS7A01G240000 chr5A 80.357 168 21 3 6110 6274 325747337 325747495 4.000000e-22 117.0
28 TraesCS7A01G240000 chr5A 91.489 47 2 1 6265 6309 93206849 93206895 5.280000e-06 63.9
29 TraesCS7A01G240000 chr5A 100.000 30 0 0 6063 6092 448627208 448627179 8.840000e-04 56.5
30 TraesCS7A01G240000 chr1A 97.500 40 0 1 6272 6311 113764603 113764641 4.080000e-07 67.6
31 TraesCS7A01G240000 chr1A 89.796 49 3 2 6263 6311 260941927 260941881 1.900000e-05 62.1
32 TraesCS7A01G240000 chr6A 91.667 48 3 1 6266 6313 409642624 409642670 1.470000e-06 65.8
33 TraesCS7A01G240000 chr6A 91.667 48 2 2 6264 6311 435610249 435610294 1.470000e-06 65.8
34 TraesCS7A01G240000 chr4A 89.796 49 4 1 6261 6309 478257664 478257711 1.900000e-05 62.1
35 TraesCS7A01G240000 chr2B 88.000 50 5 1 6016 6065 800066476 800066428 2.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G240000 chr7A 214853674 214859986 6312 True 11659.0 11659 100.00000 1 6313 1 chr7A.!!$R1 6312
1 TraesCS7A01G240000 chr7B 166768651 166775196 6545 False 1998.0 6078 89.12925 1 6017 4 chr7B.!!$F1 6016
2 TraesCS7A01G240000 chr7D 203039774 203046626 6852 False 1618.6 4964 93.60200 84 6021 5 chr7D.!!$F1 5937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 968 0.181350 AGAGAACGGAATGGCCATCC 59.819 55.0 21.08 19.79 35.94 3.51 F
1019 1292 0.106519 ATGTATGCAACTCCCCTGCC 60.107 55.0 0.00 0.00 39.13 4.85 F
2003 2652 0.179161 CTAAGGTCCTGTCTGTCGCG 60.179 60.0 0.00 0.00 0.00 5.87 F
2952 3605 0.244450 CATGCCAGTCCATTTTGCGT 59.756 50.0 0.00 0.00 0.00 5.24 F
4633 6227 0.037975 CAGGGAGCAATGTTGGCAAC 60.038 55.0 23.12 23.12 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 3120 0.251634 CAGGCAGGGAACTTCTCTCC 59.748 60.000 0.00 0.00 40.21 3.71 R
2757 3410 0.458889 CGCTCCACCATGCCAAAATG 60.459 55.000 0.00 0.00 0.00 2.32 R
3095 3750 1.064060 GGCCGAAGCATGTATCACAAC 59.936 52.381 0.00 0.00 42.56 3.32 R
4816 6410 1.593469 CAAGCACTCATCTCATCAGCG 59.407 52.381 0.00 0.00 0.00 5.18 R
6142 7802 0.107831 TGGCGATAGGGTTGCATACC 59.892 55.000 8.94 8.94 46.99 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 203 8.477256 AGATTTTCTAGCATATCTCTATCTGGC 58.523 37.037 0.00 0.00 0.00 4.85
212 213 4.179926 TCTCTATCTGGCGTGCAATATC 57.820 45.455 0.00 0.00 0.00 1.63
223 224 2.458966 CGTGCAATATCGCGCTTTTAAC 59.541 45.455 5.56 0.00 40.29 2.01
298 299 4.451557 CGTTCTTACCAAGTTTAAGCACG 58.548 43.478 5.52 5.52 38.93 5.34
311 538 0.593128 AAGCACGCCAAACATGAGTC 59.407 50.000 0.00 0.00 0.00 3.36
402 657 6.098409 ACATCTGTAGTACTAACTCCCATTGG 59.902 42.308 3.61 0.00 37.15 3.16
456 714 3.385755 CCCCATTAGAAGCCATTCAAAGG 59.614 47.826 0.00 0.00 37.94 3.11
465 723 1.631405 CCATTCAAAGGGCTTCACCA 58.369 50.000 0.00 0.00 42.05 4.17
466 724 1.273327 CCATTCAAAGGGCTTCACCAC 59.727 52.381 0.00 0.00 42.05 4.16
467 725 1.068333 CATTCAAAGGGCTTCACCACG 60.068 52.381 0.00 0.00 42.05 4.94
477 735 4.629523 TCACCACGGGGGCGTTTC 62.630 66.667 9.50 0.00 42.05 2.78
482 740 3.881104 ACGGGGGCGTTTCCAAGT 61.881 61.111 0.00 0.00 36.21 3.16
511 769 6.541278 TCATCATCAAAGCCTTAATCAGACAG 59.459 38.462 0.00 0.00 0.00 3.51
550 809 4.455606 GCTAATGGCAGGAGATTAACACT 58.544 43.478 2.77 0.00 41.35 3.55
567 826 1.086696 ACTCCGTTTTGCATGGATCG 58.913 50.000 0.00 0.00 40.11 3.69
622 882 1.593265 GGACCCAAAAGGCATGCTG 59.407 57.895 18.92 7.71 40.58 4.41
634 894 0.456653 GCATGCTGCAAAACGTAGGG 60.457 55.000 11.37 0.00 44.26 3.53
646 906 0.964358 ACGTAGGGAGAAGTGGTCCG 60.964 60.000 0.00 0.00 34.56 4.79
647 907 0.964358 CGTAGGGAGAAGTGGTCCGT 60.964 60.000 0.00 0.00 34.56 4.69
648 908 0.816373 GTAGGGAGAAGTGGTCCGTC 59.184 60.000 0.00 0.00 34.56 4.79
649 909 0.324091 TAGGGAGAAGTGGTCCGTCC 60.324 60.000 0.00 0.00 34.56 4.79
650 910 2.572284 GGAGAAGTGGTCCGTCCG 59.428 66.667 0.00 0.00 39.52 4.79
708 968 0.181350 AGAGAACGGAATGGCCATCC 59.819 55.000 21.08 19.79 35.94 3.51
732 1001 2.689771 GTACCCACATCCCCCGGT 60.690 66.667 0.00 0.00 0.00 5.28
733 1002 2.689402 TACCCACATCCCCCGGTG 60.689 66.667 0.00 0.00 34.82 4.94
734 1003 3.566016 TACCCACATCCCCCGGTGT 62.566 63.158 0.00 0.00 33.19 4.16
735 1004 2.178859 TACCCACATCCCCCGGTGTA 62.179 60.000 0.00 0.00 33.19 2.90
736 1005 2.076184 CCCACATCCCCCGGTGTAT 61.076 63.158 0.00 0.00 33.19 2.29
842 1111 0.396695 TACCTACCCCGAGGAGCAAG 60.397 60.000 0.00 0.00 39.15 4.01
878 1147 1.826487 GGGGGCGAGAGAGAGAGAC 60.826 68.421 0.00 0.00 0.00 3.36
879 1148 2.184167 GGGGCGAGAGAGAGAGACG 61.184 68.421 0.00 0.00 0.00 4.18
880 1149 2.713154 GGCGAGAGAGAGAGACGC 59.287 66.667 0.00 0.00 46.79 5.19
923 1192 1.208293 CCGAGGGGAGAAGGAAAAGAG 59.792 57.143 0.00 0.00 34.06 2.85
987 1260 2.275318 CCAAGCCAAGATTCTCTCGTC 58.725 52.381 0.00 0.00 0.00 4.20
990 1263 1.475441 GCCAAGATTCTCTCGTCGCG 61.475 60.000 0.00 0.00 0.00 5.87
1007 1280 0.382636 GCGTCGCCGTAAATGTATGC 60.383 55.000 5.75 0.00 36.15 3.14
1019 1292 0.106519 ATGTATGCAACTCCCCTGCC 60.107 55.000 0.00 0.00 39.13 4.85
1052 1325 3.433314 CCTCACCCATCAGAAATCTGGAG 60.433 52.174 10.37 7.61 43.91 3.86
1071 1344 3.193903 GGAGTCCTACGCTTCTTCTTCTT 59.806 47.826 0.41 0.00 0.00 2.52
1072 1345 4.417506 GAGTCCTACGCTTCTTCTTCTTC 58.582 47.826 0.00 0.00 0.00 2.87
1073 1346 4.083565 AGTCCTACGCTTCTTCTTCTTCT 58.916 43.478 0.00 0.00 0.00 2.85
1074 1347 4.525100 AGTCCTACGCTTCTTCTTCTTCTT 59.475 41.667 0.00 0.00 0.00 2.52
1075 1348 4.860352 GTCCTACGCTTCTTCTTCTTCTTC 59.140 45.833 0.00 0.00 0.00 2.87
1076 1349 4.767928 TCCTACGCTTCTTCTTCTTCTTCT 59.232 41.667 0.00 0.00 0.00 2.85
1077 1350 5.244178 TCCTACGCTTCTTCTTCTTCTTCTT 59.756 40.000 0.00 0.00 0.00 2.52
1078 1351 5.575218 CCTACGCTTCTTCTTCTTCTTCTTC 59.425 44.000 0.00 0.00 0.00 2.87
1079 1352 4.311606 ACGCTTCTTCTTCTTCTTCTTCC 58.688 43.478 0.00 0.00 0.00 3.46
1162 1435 4.814234 GGTTTGGGTTCCATTTTCTTTGTC 59.186 41.667 0.00 0.00 31.53 3.18
1179 1452 9.613428 TTTCTTTGTCTATCTTCTTGTTCTTGA 57.387 29.630 0.00 0.00 0.00 3.02
1183 1456 4.564769 GTCTATCTTCTTGTTCTTGAGCCG 59.435 45.833 0.00 0.00 0.00 5.52
1184 1457 2.169832 TCTTCTTGTTCTTGAGCCGG 57.830 50.000 0.00 0.00 0.00 6.13
1185 1458 0.519077 CTTCTTGTTCTTGAGCCGGC 59.481 55.000 21.89 21.89 0.00 6.13
1186 1459 0.889186 TTCTTGTTCTTGAGCCGGCC 60.889 55.000 26.15 15.80 0.00 6.13
1187 1460 1.302832 CTTGTTCTTGAGCCGGCCT 60.303 57.895 26.15 10.99 0.00 5.19
1188 1461 1.580845 CTTGTTCTTGAGCCGGCCTG 61.581 60.000 26.15 11.17 0.00 4.85
1209 1482 0.626916 TTTTGGGTAGGGATTCGGGG 59.373 55.000 0.00 0.00 0.00 5.73
1210 1483 1.928714 TTTGGGTAGGGATTCGGGGC 61.929 60.000 0.00 0.00 0.00 5.80
1211 1484 2.447959 GGGTAGGGATTCGGGGCT 60.448 66.667 0.00 0.00 0.00 5.19
1212 1485 2.819284 GGGTAGGGATTCGGGGCTG 61.819 68.421 0.00 0.00 0.00 4.85
1213 1486 2.819284 GGTAGGGATTCGGGGCTGG 61.819 68.421 0.00 0.00 0.00 4.85
1214 1487 3.168528 TAGGGATTCGGGGCTGGC 61.169 66.667 0.00 0.00 0.00 4.85
1217 1490 4.883354 GGATTCGGGGCTGGCCTG 62.883 72.222 22.32 22.32 36.10 4.85
1218 1491 4.115199 GATTCGGGGCTGGCCTGT 62.115 66.667 26.27 10.34 36.10 4.00
1219 1492 4.115199 ATTCGGGGCTGGCCTGTC 62.115 66.667 26.27 8.80 36.10 3.51
1298 1575 5.813513 AGGATTGAAATAAATGGGATGCC 57.186 39.130 0.00 0.00 0.00 4.40
1373 1658 2.266055 CTCCTGGTCCTGCGAACC 59.734 66.667 0.00 0.00 37.31 3.62
1394 1679 0.727398 CAAATCGTTTCTCTCCGCCC 59.273 55.000 0.00 0.00 0.00 6.13
1501 1786 7.273598 GTGTGTTCTTTTTCAAGTCCTCTTTTC 59.726 37.037 0.00 0.00 0.00 2.29
1512 1798 2.224314 GTCCTCTTTTCCTGTTCTTGCG 59.776 50.000 0.00 0.00 0.00 4.85
1522 1808 0.464036 TGTTCTTGCGACTGACTGGT 59.536 50.000 0.00 0.00 0.00 4.00
1530 1816 2.094182 TGCGACTGACTGGTAATCCTTC 60.094 50.000 0.00 0.00 34.23 3.46
1583 1869 4.767255 GGGCTCCGAGCTGGTGTG 62.767 72.222 19.68 0.00 41.99 3.82
1584 1870 4.008933 GGCTCCGAGCTGGTGTGT 62.009 66.667 19.68 0.00 41.99 3.72
1594 1880 1.202698 AGCTGGTGTGTCCAAGAAGTC 60.203 52.381 0.00 0.00 46.59 3.01
1630 1916 0.892755 ATGTCGGGTAAGAACGAGCA 59.107 50.000 0.00 0.00 40.09 4.26
1666 1955 1.421485 GCGTCATCCTTCTTGCGTG 59.579 57.895 0.00 0.00 0.00 5.34
1672 1966 3.251004 GTCATCCTTCTTGCGTGTTCTTT 59.749 43.478 0.00 0.00 0.00 2.52
1749 2398 2.764768 GACGACATCGAGATATCGCTC 58.235 52.381 12.90 7.01 41.04 5.03
1997 2646 3.110705 ACATGATGCTAAGGTCCTGTCT 58.889 45.455 0.00 0.00 0.00 3.41
1999 2648 2.540383 TGATGCTAAGGTCCTGTCTGT 58.460 47.619 0.00 0.00 0.00 3.41
2000 2649 2.497675 TGATGCTAAGGTCCTGTCTGTC 59.502 50.000 0.00 0.00 0.00 3.51
2001 2650 0.888619 TGCTAAGGTCCTGTCTGTCG 59.111 55.000 0.00 0.00 0.00 4.35
2002 2651 0.458716 GCTAAGGTCCTGTCTGTCGC 60.459 60.000 0.00 0.00 0.00 5.19
2003 2652 0.179161 CTAAGGTCCTGTCTGTCGCG 60.179 60.000 0.00 0.00 0.00 5.87
2004 2653 0.607217 TAAGGTCCTGTCTGTCGCGA 60.607 55.000 3.71 3.71 0.00 5.87
2006 2655 1.006571 GGTCCTGTCTGTCGCGAAA 60.007 57.895 12.06 3.77 0.00 3.46
2008 2657 1.006571 TCCTGTCTGTCGCGAAACC 60.007 57.895 12.06 0.00 0.00 3.27
2009 2658 1.300620 CCTGTCTGTCGCGAAACCA 60.301 57.895 12.06 3.58 0.00 3.67
2010 2659 1.557443 CCTGTCTGTCGCGAAACCAC 61.557 60.000 12.06 6.06 0.00 4.16
2011 2660 1.557443 CTGTCTGTCGCGAAACCACC 61.557 60.000 12.06 0.00 0.00 4.61
2040 2689 1.670295 CCTTTTGTTTTTGCCCTGTGC 59.330 47.619 0.00 0.00 41.77 4.57
2054 2703 2.440409 CCTGTGCTGTTTGGATAGCTT 58.560 47.619 0.00 0.00 40.34 3.74
2083 2732 0.250234 CCAGGATCTGAAACTCGCCA 59.750 55.000 0.00 0.00 32.44 5.69
2123 2773 2.879026 GTTCTTGAAGGCGAGGAAGTTT 59.121 45.455 0.00 0.00 0.00 2.66
2195 2845 0.893727 AGTTTGGGGCCGACACAATC 60.894 55.000 7.59 0.00 0.00 2.67
2225 2875 0.393132 TCACACCGACCTGCAACAAA 60.393 50.000 0.00 0.00 0.00 2.83
2226 2876 0.453793 CACACCGACCTGCAACAAAA 59.546 50.000 0.00 0.00 0.00 2.44
2253 2903 5.486526 CAGAACAAGGAGTCTCTGCTTTAT 58.513 41.667 0.00 0.00 39.00 1.40
2268 2918 4.513442 TGCTTTATGCCTAACATTCGACT 58.487 39.130 0.00 0.00 40.38 4.18
2274 2924 2.029739 TGCCTAACATTCGACTCGTTCA 60.030 45.455 0.00 0.00 0.00 3.18
2470 3120 0.391793 GGAGTTTGAGAGGGCCTTCG 60.392 60.000 7.89 0.00 0.00 3.79
2541 3191 1.272092 ACCACCACCATCTTGGATGTG 60.272 52.381 0.00 6.84 40.96 3.21
2568 3218 4.949856 GGTGTGGTATGTGAATCATCCTTT 59.050 41.667 0.00 0.00 37.91 3.11
2570 3220 6.404734 GGTGTGGTATGTGAATCATCCTTTTC 60.405 42.308 0.00 0.00 37.91 2.29
2571 3221 5.652014 TGTGGTATGTGAATCATCCTTTTCC 59.348 40.000 0.00 0.00 37.91 3.13
2572 3222 5.652014 GTGGTATGTGAATCATCCTTTTCCA 59.348 40.000 0.00 0.00 37.91 3.53
2600 3250 7.849804 ACGCTTGTATATCTTGATCTGTTTT 57.150 32.000 0.00 0.00 0.00 2.43
2633 3283 6.016213 TGTTGAATGTGTTCTCATCAATGG 57.984 37.500 0.00 0.00 35.33 3.16
2644 3297 5.063180 TCTCATCAATGGTTTTGTCATGC 57.937 39.130 0.00 0.00 0.00 4.06
2645 3298 4.768448 TCTCATCAATGGTTTTGTCATGCT 59.232 37.500 0.00 0.00 0.00 3.79
2657 3310 5.860941 TTTGTCATGCTCAGGGTTTTAAA 57.139 34.783 0.00 0.00 0.00 1.52
2736 3389 7.441458 GCGACTATTATCCTGAGGTAATTTTGT 59.559 37.037 0.00 3.37 0.00 2.83
2738 3391 8.451908 ACTATTATCCTGAGGTAATTTTGTGC 57.548 34.615 0.00 0.00 0.00 4.57
2757 3410 0.317603 CCGCAATGCTTCATGCTAGC 60.318 55.000 8.10 8.10 43.37 3.42
2777 3430 0.899717 ATTTTGGCATGGTGGAGCGT 60.900 50.000 0.00 0.00 0.00 5.07
2780 3433 2.359850 GGCATGGTGGAGCGTTGA 60.360 61.111 0.00 0.00 0.00 3.18
2788 3441 3.745799 TGGTGGAGCGTTGATTCTAAAA 58.254 40.909 0.00 0.00 0.00 1.52
2790 3443 4.764823 TGGTGGAGCGTTGATTCTAAAATT 59.235 37.500 0.00 0.00 0.00 1.82
2952 3605 0.244450 CATGCCAGTCCATTTTGCGT 59.756 50.000 0.00 0.00 0.00 5.24
3080 3735 8.263940 TGAGGAACAAGTTTAATCTTAATCCG 57.736 34.615 16.36 3.12 36.91 4.18
3082 3737 8.040716 AGGAACAAGTTTAATCTTAATCCGTG 57.959 34.615 16.36 2.58 36.91 4.94
3089 3744 6.039382 AGTTTAATCTTAATCCGTGCCCATTC 59.961 38.462 0.00 0.00 0.00 2.67
3095 3750 1.113788 ATCCGTGCCCATTCCATTTG 58.886 50.000 0.00 0.00 0.00 2.32
3107 3770 6.044046 CCCATTCCATTTGTTGTGATACATG 58.956 40.000 0.00 0.00 0.00 3.21
3172 3835 2.558795 GTGTGCTCCTCTCAGTGAGTTA 59.441 50.000 19.53 5.94 41.11 2.24
3202 3865 0.106268 TTGGTGGTTCATGCACCTGT 60.106 50.000 15.79 0.00 39.59 4.00
3211 3874 4.379813 GGTTCATGCACCTGTATTGACAAG 60.380 45.833 7.34 0.00 34.35 3.16
3300 3963 7.963981 ACACTGTAATTATGTGAATGTCTTCG 58.036 34.615 20.86 0.00 35.83 3.79
3303 3966 7.817478 ACTGTAATTATGTGAATGTCTTCGTCA 59.183 33.333 0.00 0.00 33.86 4.35
3304 3967 8.541133 TGTAATTATGTGAATGTCTTCGTCAA 57.459 30.769 0.00 0.00 33.86 3.18
3312 3975 5.405571 GTGAATGTCTTCGTCAATGTACTGT 59.594 40.000 0.00 0.00 33.86 3.55
3365 4034 5.878116 TGTACAACTGCTTATACATGTTCCC 59.122 40.000 2.30 0.00 0.00 3.97
3387 4056 5.525378 CCCTTTGTAGCTGATACACAATCTC 59.475 44.000 5.09 0.00 44.14 2.75
3403 4072 1.739562 CTCGAGGCTGGTTCTGTGC 60.740 63.158 3.91 0.00 0.00 4.57
3462 4131 3.489047 GCGATTCTTCTCTTCGATTGGAG 59.511 47.826 0.00 0.00 34.92 3.86
3480 4149 2.163211 GGAGCAGTTGAAGGCAAGATTC 59.837 50.000 0.00 0.00 34.01 2.52
3535 4204 6.936900 TCTAACTGATTGCTGCTTCTAACTTT 59.063 34.615 0.00 0.00 0.00 2.66
3536 4205 6.396829 AACTGATTGCTGCTTCTAACTTTT 57.603 33.333 0.00 0.00 0.00 2.27
3562 4231 5.294356 TGTGTTACTTACTTACAGTGGCAG 58.706 41.667 0.00 0.00 0.00 4.85
3598 4267 4.338012 ACACATCAAATGCTGAATCAGGA 58.662 39.130 12.66 9.97 37.67 3.86
3601 4270 5.067283 CACATCAAATGCTGAATCAGGATCA 59.933 40.000 17.40 4.68 41.50 2.92
3626 4295 4.582869 TGTTGATGACTTTGGATCCTCAG 58.417 43.478 14.23 11.04 0.00 3.35
3700 4369 7.516198 AGTGAGTTCAATGCTTTATTCTTGT 57.484 32.000 0.00 0.00 0.00 3.16
3708 4377 7.866729 TCAATGCTTTATTCTTGTTTCGTACA 58.133 30.769 0.00 0.00 34.12 2.90
3709 4378 7.801315 TCAATGCTTTATTCTTGTTTCGTACAC 59.199 33.333 0.00 0.00 36.21 2.90
3710 4379 5.992729 TGCTTTATTCTTGTTTCGTACACC 58.007 37.500 0.00 0.00 36.21 4.16
3778 4447 5.827797 CCATGCTATTACCACCACAACTTAT 59.172 40.000 0.00 0.00 0.00 1.73
4006 4682 4.262079 CCCTCGTGATTTAGGTACCATCTC 60.262 50.000 15.94 8.48 0.00 2.75
4011 4687 5.290386 GTGATTTAGGTACCATCTCTTCCG 58.710 45.833 15.94 0.00 0.00 4.30
4064 4740 3.680642 ATTGTTACGCAGCTTGCTATG 57.319 42.857 0.00 0.00 42.25 2.23
4065 4741 2.093306 TGTTACGCAGCTTGCTATGT 57.907 45.000 0.00 0.00 42.25 2.29
4069 4745 0.523072 ACGCAGCTTGCTATGTTTGG 59.477 50.000 0.00 0.00 42.25 3.28
4075 4751 5.455392 GCAGCTTGCTATGTTTGGTATATG 58.545 41.667 0.00 0.00 40.96 1.78
4105 4781 8.597167 AGTTGCCTATATATGCTGTCTATTTGA 58.403 33.333 10.78 0.00 0.00 2.69
4109 5697 9.605275 GCCTATATATGCTGTCTATTTGATTGA 57.395 33.333 3.01 0.00 0.00 2.57
4129 5717 5.220710 TGATTGCTCTAGCCTAAGATTCC 57.779 43.478 0.00 0.00 41.18 3.01
4182 5770 9.927668 CCAAAATAATCTGTGTTCCTTGTAAAT 57.072 29.630 0.00 0.00 0.00 1.40
4285 5874 2.187958 TGCTAGATGCCTAGGTTGTGT 58.812 47.619 11.31 0.00 42.05 3.72
4346 5935 6.088085 GGCATAAAACACTTCAAATTCTGACG 59.912 38.462 0.00 0.00 32.21 4.35
4372 5961 6.092807 GGAAAGAATGAAGTACAGGTCATGTC 59.907 42.308 0.00 7.42 42.70 3.06
4381 5970 4.820716 AGTACAGGTCATGTCGTATACCTC 59.179 45.833 0.00 0.00 42.70 3.85
4486 6076 3.005554 ACTGATGAATCTGTTTGCCTCG 58.994 45.455 0.00 0.00 35.79 4.63
4540 6130 8.317679 ACTGCTTTATCTATCCTTGGTGATATC 58.682 37.037 0.00 0.00 0.00 1.63
4591 6185 6.374333 GGCAAGTGTTATCTTCCTCATTGTTA 59.626 38.462 0.00 0.00 0.00 2.41
4633 6227 0.037975 CAGGGAGCAATGTTGGCAAC 60.038 55.000 23.12 23.12 0.00 4.17
4636 6230 0.037975 GGAGCAATGTTGGCAACCTG 60.038 55.000 26.31 22.55 0.00 4.00
4741 6335 6.831353 AGCTTTTCATCTCTAGTAGAGCACTA 59.169 38.462 20.60 5.62 42.04 2.74
4775 6369 4.722700 CCCGGCCTTCCACTGTGG 62.723 72.222 20.86 20.86 39.43 4.17
4816 6410 2.825836 CAGCCCCGAACCATCAGC 60.826 66.667 0.00 0.00 0.00 4.26
4864 6458 4.266976 CAGCGCATTGAAAATCTTGAATCC 59.733 41.667 11.47 0.00 0.00 3.01
4990 6584 5.701750 GGAGAGGACCAAAAGAGTAAGTTTC 59.298 44.000 0.00 0.00 0.00 2.78
4991 6585 6.464607 GGAGAGGACCAAAAGAGTAAGTTTCT 60.465 42.308 0.00 0.00 0.00 2.52
4992 6586 7.256225 GGAGAGGACCAAAAGAGTAAGTTTCTA 60.256 40.741 0.00 0.00 0.00 2.10
4995 6589 6.996879 AGGACCAAAAGAGTAAGTTTCTAACC 59.003 38.462 0.00 0.00 0.00 2.85
4997 6591 6.585416 ACCAAAAGAGTAAGTTTCTAACCGA 58.415 36.000 0.00 0.00 0.00 4.69
4999 6593 7.718314 ACCAAAAGAGTAAGTTTCTAACCGAAT 59.282 33.333 0.00 0.00 0.00 3.34
5016 6631 4.082463 ACCGAATCAGACTTGAGAGTTCTC 60.082 45.833 2.16 2.16 43.15 2.87
5039 6654 0.962356 CAGTTGGGGCATGTGTCTCC 60.962 60.000 0.00 0.00 0.00 3.71
5041 6656 0.962356 GTTGGGGCATGTGTCTCCAG 60.962 60.000 0.00 0.00 0.00 3.86
5042 6657 1.426251 TTGGGGCATGTGTCTCCAGT 61.426 55.000 0.00 0.00 0.00 4.00
5043 6658 1.380302 GGGGCATGTGTCTCCAGTT 59.620 57.895 0.00 0.00 0.00 3.16
5044 6659 0.251341 GGGGCATGTGTCTCCAGTTT 60.251 55.000 0.00 0.00 0.00 2.66
5046 6661 1.963515 GGGCATGTGTCTCCAGTTTTT 59.036 47.619 0.00 0.00 0.00 1.94
5047 6662 3.153919 GGGCATGTGTCTCCAGTTTTTA 58.846 45.455 0.00 0.00 0.00 1.52
5050 6665 4.142381 GGCATGTGTCTCCAGTTTTTATCC 60.142 45.833 0.00 0.00 0.00 2.59
5092 6744 2.420628 TTTGCTTCTTTGTGGATGCG 57.579 45.000 0.00 0.00 38.63 4.73
5102 6754 1.171549 TGTGGATGCGTGCATTGTGT 61.172 50.000 8.98 0.00 36.70 3.72
5121 6773 5.411781 TGTGTTTTATGCGAAGTTTTGGTT 58.588 33.333 0.00 0.00 0.00 3.67
5122 6774 5.289675 TGTGTTTTATGCGAAGTTTTGGTTG 59.710 36.000 0.00 0.00 0.00 3.77
5123 6775 5.289917 GTGTTTTATGCGAAGTTTTGGTTGT 59.710 36.000 0.00 0.00 0.00 3.32
5200 6852 1.540267 GAAGCTGTACAGGAGTCGTCA 59.460 52.381 23.95 0.00 0.00 4.35
5242 6895 2.009774 CAATTAGACCTGCTCAACCGG 58.990 52.381 0.00 0.00 0.00 5.28
5262 6915 5.048294 ACCGGTTGTATTCCAAAATGAACTC 60.048 40.000 0.00 0.00 34.07 3.01
5274 6927 2.432628 GAACTCGTGCTCACCCCG 60.433 66.667 0.00 0.00 0.00 5.73
5279 6932 4.457496 CGTGCTCACCCCGATGCT 62.457 66.667 0.00 0.00 0.00 3.79
5399 7052 1.604147 CGCCATTTTTGACCTCCCCC 61.604 60.000 0.00 0.00 0.00 5.40
5445 7098 5.351233 AAGAGAAGATAGCATACGACGAG 57.649 43.478 0.00 0.00 0.00 4.18
5446 7099 4.633175 AGAGAAGATAGCATACGACGAGA 58.367 43.478 0.00 0.00 0.00 4.04
5447 7100 4.449743 AGAGAAGATAGCATACGACGAGAC 59.550 45.833 0.00 0.00 0.00 3.36
5473 7126 0.370273 CGCTTCCTTTCGGAACATCG 59.630 55.000 0.00 0.00 44.28 3.84
5603 7261 2.285827 TTTTGTTGGCCGAAAGTGTG 57.714 45.000 0.00 0.00 0.00 3.82
5639 7297 1.447317 CTGCCTTTGCGTTCCACTGT 61.447 55.000 0.00 0.00 41.78 3.55
5676 7334 1.453197 GGCGGGAATGGAATCCGTT 60.453 57.895 6.42 6.42 40.62 4.44
5692 7350 0.859232 CGTTGAGGTTTGACTGACCG 59.141 55.000 0.00 0.00 42.11 4.79
5718 7376 0.882042 ACAGCGAGTGACAGGCTTTG 60.882 55.000 0.00 0.00 34.13 2.77
5733 7391 1.989966 CTTTGCCGCTGAGCTGATGG 61.990 60.000 1.78 0.00 0.00 3.51
5753 7413 2.574824 GGTGTCTGTAAATGGTAGGGGT 59.425 50.000 0.00 0.00 0.00 4.95
5781 7441 4.431809 CACCTCTGATCTGATGTGAACTC 58.568 47.826 24.24 0.00 35.54 3.01
5782 7442 4.081807 CACCTCTGATCTGATGTGAACTCA 60.082 45.833 24.24 0.00 35.54 3.41
5783 7443 4.529769 ACCTCTGATCTGATGTGAACTCAA 59.470 41.667 9.23 0.00 0.00 3.02
5784 7444 4.869297 CCTCTGATCTGATGTGAACTCAAC 59.131 45.833 2.43 0.00 0.00 3.18
5785 7445 5.337410 CCTCTGATCTGATGTGAACTCAACT 60.337 44.000 2.43 0.00 0.00 3.16
5786 7446 5.718146 TCTGATCTGATGTGAACTCAACTC 58.282 41.667 0.00 0.00 0.00 3.01
5825 7485 0.627451 TGATGGGAATGCAGAGGCTT 59.373 50.000 0.00 0.00 41.91 4.35
5837 7497 0.617249 AGAGGCTTGGGTCTCCAGAG 60.617 60.000 0.00 0.00 44.63 3.35
6029 7689 2.891882 CCGGCGGCAAAATTCCAT 59.108 55.556 15.42 0.00 0.00 3.41
6030 7690 1.519013 CCGGCGGCAAAATTCCATG 60.519 57.895 15.42 0.00 0.00 3.66
6031 7691 1.215117 CGGCGGCAAAATTCCATGT 59.785 52.632 10.53 0.00 0.00 3.21
6032 7692 0.389687 CGGCGGCAAAATTCCATGTT 60.390 50.000 10.53 0.00 0.00 2.71
6033 7693 1.807139 GGCGGCAAAATTCCATGTTT 58.193 45.000 3.07 0.00 0.00 2.83
6034 7694 2.150390 GGCGGCAAAATTCCATGTTTT 58.850 42.857 3.07 0.00 0.00 2.43
6035 7695 2.095819 GGCGGCAAAATTCCATGTTTTG 60.096 45.455 3.07 13.09 45.01 2.44
6036 7696 2.805099 GCGGCAAAATTCCATGTTTTGA 59.195 40.909 18.93 0.00 45.02 2.69
6037 7697 3.363871 GCGGCAAAATTCCATGTTTTGAC 60.364 43.478 18.93 16.20 46.27 3.18
6038 7698 3.186205 CGGCAAAATTCCATGTTTTGACC 59.814 43.478 18.93 17.03 46.77 4.02
6039 7699 3.501828 GGCAAAATTCCATGTTTTGACCC 59.498 43.478 18.93 10.62 44.81 4.46
6040 7700 4.388485 GCAAAATTCCATGTTTTGACCCT 58.612 39.130 18.93 0.00 45.02 4.34
6041 7701 4.821260 GCAAAATTCCATGTTTTGACCCTT 59.179 37.500 18.93 0.00 45.02 3.95
6042 7702 5.299028 GCAAAATTCCATGTTTTGACCCTTT 59.701 36.000 18.93 0.00 45.02 3.11
6043 7703 6.183360 GCAAAATTCCATGTTTTGACCCTTTT 60.183 34.615 18.93 2.79 45.02 2.27
6044 7704 7.630297 GCAAAATTCCATGTTTTGACCCTTTTT 60.630 33.333 18.93 1.11 45.02 1.94
6079 7739 8.884124 TTTGAATATTTTTCAGATCTGACCCT 57.116 30.769 25.07 12.24 39.66 4.34
6080 7740 8.884124 TTGAATATTTTTCAGATCTGACCCTT 57.116 30.769 25.07 12.73 39.66 3.95
6081 7741 8.884124 TGAATATTTTTCAGATCTGACCCTTT 57.116 30.769 25.07 13.36 39.66 3.11
6082 7742 9.312904 TGAATATTTTTCAGATCTGACCCTTTT 57.687 29.630 25.07 13.87 39.66 2.27
6083 7743 9.578439 GAATATTTTTCAGATCTGACCCTTTTG 57.422 33.333 25.07 0.00 39.66 2.44
6084 7744 4.853924 TTTTCAGATCTGACCCTTTTGC 57.146 40.909 25.07 0.00 39.66 3.68
6085 7745 3.795688 TTCAGATCTGACCCTTTTGCT 57.204 42.857 25.07 0.00 39.66 3.91
6086 7746 4.908601 TTCAGATCTGACCCTTTTGCTA 57.091 40.909 25.07 3.58 39.66 3.49
6087 7747 5.441718 TTCAGATCTGACCCTTTTGCTAT 57.558 39.130 25.07 0.00 39.66 2.97
6088 7748 5.028549 TCAGATCTGACCCTTTTGCTATC 57.971 43.478 21.67 0.00 34.14 2.08
6089 7749 3.806521 CAGATCTGACCCTTTTGCTATCG 59.193 47.826 18.34 0.00 0.00 2.92
6090 7750 3.452627 AGATCTGACCCTTTTGCTATCGT 59.547 43.478 0.00 0.00 0.00 3.73
6091 7751 3.247006 TCTGACCCTTTTGCTATCGTC 57.753 47.619 0.00 0.00 0.00 4.20
6092 7752 2.832129 TCTGACCCTTTTGCTATCGTCT 59.168 45.455 0.00 0.00 0.00 4.18
6093 7753 3.260884 TCTGACCCTTTTGCTATCGTCTT 59.739 43.478 0.00 0.00 0.00 3.01
6094 7754 4.003648 CTGACCCTTTTGCTATCGTCTTT 58.996 43.478 0.00 0.00 0.00 2.52
6095 7755 4.394729 TGACCCTTTTGCTATCGTCTTTT 58.605 39.130 0.00 0.00 0.00 2.27
6096 7756 4.215399 TGACCCTTTTGCTATCGTCTTTTG 59.785 41.667 0.00 0.00 0.00 2.44
6097 7757 3.057526 ACCCTTTTGCTATCGTCTTTTGC 60.058 43.478 0.00 0.00 0.00 3.68
6098 7758 3.191371 CCCTTTTGCTATCGTCTTTTGCT 59.809 43.478 0.00 0.00 0.00 3.91
6099 7759 4.394920 CCCTTTTGCTATCGTCTTTTGCTA 59.605 41.667 0.00 0.00 0.00 3.49
6100 7760 5.066505 CCCTTTTGCTATCGTCTTTTGCTAT 59.933 40.000 0.00 0.00 0.00 2.97
6101 7761 6.404734 CCCTTTTGCTATCGTCTTTTGCTATT 60.405 38.462 0.00 0.00 0.00 1.73
6102 7762 6.470235 CCTTTTGCTATCGTCTTTTGCTATTG 59.530 38.462 0.00 0.00 0.00 1.90
6103 7763 6.494893 TTTGCTATCGTCTTTTGCTATTGT 57.505 33.333 0.00 0.00 0.00 2.71
6104 7764 5.718649 TGCTATCGTCTTTTGCTATTGTC 57.281 39.130 0.00 0.00 0.00 3.18
6105 7765 5.175127 TGCTATCGTCTTTTGCTATTGTCA 58.825 37.500 0.00 0.00 0.00 3.58
6106 7766 5.817296 TGCTATCGTCTTTTGCTATTGTCAT 59.183 36.000 0.00 0.00 0.00 3.06
6107 7767 6.132056 GCTATCGTCTTTTGCTATTGTCATG 58.868 40.000 0.00 0.00 0.00 3.07
6108 7768 4.944962 TCGTCTTTTGCTATTGTCATGG 57.055 40.909 0.00 0.00 0.00 3.66
6109 7769 4.323417 TCGTCTTTTGCTATTGTCATGGT 58.677 39.130 0.00 0.00 0.00 3.55
6110 7770 4.759693 TCGTCTTTTGCTATTGTCATGGTT 59.240 37.500 0.00 0.00 0.00 3.67
6111 7771 4.853196 CGTCTTTTGCTATTGTCATGGTTG 59.147 41.667 0.00 0.00 0.00 3.77
6112 7772 5.562696 CGTCTTTTGCTATTGTCATGGTTGT 60.563 40.000 0.00 0.00 0.00 3.32
6113 7773 5.630680 GTCTTTTGCTATTGTCATGGTTGTG 59.369 40.000 0.00 0.00 0.00 3.33
6114 7774 5.301551 TCTTTTGCTATTGTCATGGTTGTGT 59.698 36.000 0.00 0.00 0.00 3.72
6115 7775 5.528043 TTTGCTATTGTCATGGTTGTGTT 57.472 34.783 0.00 0.00 0.00 3.32
6116 7776 5.528043 TTGCTATTGTCATGGTTGTGTTT 57.472 34.783 0.00 0.00 0.00 2.83
6117 7777 6.641169 TTGCTATTGTCATGGTTGTGTTTA 57.359 33.333 0.00 0.00 0.00 2.01
6118 7778 6.641169 TGCTATTGTCATGGTTGTGTTTAA 57.359 33.333 0.00 0.00 0.00 1.52
6119 7779 7.225784 TGCTATTGTCATGGTTGTGTTTAAT 57.774 32.000 0.00 0.00 0.00 1.40
6120 7780 8.341892 TGCTATTGTCATGGTTGTGTTTAATA 57.658 30.769 0.00 0.00 0.00 0.98
6121 7781 8.240682 TGCTATTGTCATGGTTGTGTTTAATAC 58.759 33.333 0.00 0.00 0.00 1.89
6122 7782 8.458843 GCTATTGTCATGGTTGTGTTTAATACT 58.541 33.333 0.00 0.00 0.00 2.12
6126 7786 7.812648 TGTCATGGTTGTGTTTAATACTTAGC 58.187 34.615 0.00 0.00 0.00 3.09
6127 7787 7.445707 TGTCATGGTTGTGTTTAATACTTAGCA 59.554 33.333 0.00 0.00 0.00 3.49
6128 7788 8.293867 GTCATGGTTGTGTTTAATACTTAGCAA 58.706 33.333 0.00 0.00 0.00 3.91
6129 7789 8.851145 TCATGGTTGTGTTTAATACTTAGCAAA 58.149 29.630 0.00 0.00 0.00 3.68
6130 7790 9.469807 CATGGTTGTGTTTAATACTTAGCAAAA 57.530 29.630 0.00 0.00 0.00 2.44
6160 7820 2.928416 GGTATGCAACCCTATCGCC 58.072 57.895 0.00 0.00 43.16 5.54
6161 7821 0.107831 GGTATGCAACCCTATCGCCA 59.892 55.000 0.00 0.00 43.16 5.69
6162 7822 1.512926 GTATGCAACCCTATCGCCAG 58.487 55.000 0.00 0.00 0.00 4.85
6163 7823 0.396435 TATGCAACCCTATCGCCAGG 59.604 55.000 0.00 0.00 35.26 4.45
6169 7829 3.971894 CCTATCGCCAGGGACCTT 58.028 61.111 0.00 0.00 31.47 3.50
6170 7830 1.447643 CCTATCGCCAGGGACCTTG 59.552 63.158 0.00 0.00 31.47 3.61
6171 7831 1.447643 CTATCGCCAGGGACCTTGG 59.552 63.158 18.34 18.34 0.00 3.61
6172 7832 2.666596 CTATCGCCAGGGACCTTGGC 62.667 65.000 32.64 32.64 44.69 4.52
6189 7849 1.875009 GGCGGTAGGCAGTTATAACC 58.125 55.000 12.05 0.00 46.16 2.85
6190 7850 1.415289 GGCGGTAGGCAGTTATAACCT 59.585 52.381 12.05 5.26 46.16 3.50
6191 7851 2.629617 GGCGGTAGGCAGTTATAACCTA 59.370 50.000 12.05 4.29 46.16 3.08
6195 7855 4.248691 GTAGGCAGTTATAACCTACGGG 57.751 50.000 12.05 0.00 44.68 5.28
6196 7856 1.415289 AGGCAGTTATAACCTACGGGC 59.585 52.381 12.05 9.05 35.76 6.13
6197 7857 1.139455 GGCAGTTATAACCTACGGGCA 59.861 52.381 12.05 0.00 35.63 5.36
6198 7858 2.224450 GGCAGTTATAACCTACGGGCAT 60.224 50.000 12.05 0.00 35.63 4.40
6199 7859 2.806244 GCAGTTATAACCTACGGGCATG 59.194 50.000 12.05 2.13 35.63 4.06
6200 7860 3.399330 CAGTTATAACCTACGGGCATGG 58.601 50.000 12.05 0.00 35.63 3.66
6201 7861 3.070446 CAGTTATAACCTACGGGCATGGA 59.930 47.826 12.05 0.00 35.63 3.41
6202 7862 3.070590 AGTTATAACCTACGGGCATGGAC 59.929 47.826 12.05 0.00 35.63 4.02
6203 7863 0.763035 ATAACCTACGGGCATGGACC 59.237 55.000 0.00 0.00 35.63 4.46
6204 7864 0.325860 TAACCTACGGGCATGGACCT 60.326 55.000 0.00 0.00 35.63 3.85
6205 7865 1.205460 AACCTACGGGCATGGACCTT 61.205 55.000 0.00 0.00 35.63 3.50
6206 7866 1.153168 CCTACGGGCATGGACCTTG 60.153 63.158 2.95 2.95 0.00 3.61
6207 7867 1.153168 CTACGGGCATGGACCTTGG 60.153 63.158 9.29 0.00 0.00 3.61
6208 7868 3.338275 TACGGGCATGGACCTTGGC 62.338 63.158 21.84 21.84 38.82 4.52
6218 7878 4.911901 ACCTTGGCGGTAGCAAAA 57.088 50.000 0.00 0.00 46.73 2.44
6219 7879 2.641197 ACCTTGGCGGTAGCAAAAG 58.359 52.632 0.00 0.00 46.73 2.27
6220 7880 1.883021 CCTTGGCGGTAGCAAAAGG 59.117 57.895 8.94 8.94 45.75 3.11
6221 7881 1.595093 CCTTGGCGGTAGCAAAAGGG 61.595 60.000 13.22 0.00 46.49 3.95
6222 7882 3.941873 CCTTGGCGGTAGCAAAAGGGA 62.942 57.143 13.22 0.00 46.49 4.20
6226 7886 2.347697 GCGGTAGCAAAAGGGAAAAG 57.652 50.000 0.00 0.00 44.35 2.27
6227 7887 1.067846 GCGGTAGCAAAAGGGAAAAGG 60.068 52.381 0.00 0.00 44.35 3.11
6228 7888 1.544246 CGGTAGCAAAAGGGAAAAGGG 59.456 52.381 0.00 0.00 0.00 3.95
6229 7889 2.605257 GGTAGCAAAAGGGAAAAGGGT 58.395 47.619 0.00 0.00 0.00 4.34
6230 7890 2.561419 GGTAGCAAAAGGGAAAAGGGTC 59.439 50.000 0.00 0.00 0.00 4.46
6231 7891 2.470057 AGCAAAAGGGAAAAGGGTCA 57.530 45.000 0.00 0.00 0.00 4.02
6232 7892 2.319844 AGCAAAAGGGAAAAGGGTCAG 58.680 47.619 0.00 0.00 0.00 3.51
6233 7893 2.091333 AGCAAAAGGGAAAAGGGTCAGA 60.091 45.455 0.00 0.00 0.00 3.27
6234 7894 2.899900 GCAAAAGGGAAAAGGGTCAGAT 59.100 45.455 0.00 0.00 0.00 2.90
6235 7895 3.056536 GCAAAAGGGAAAAGGGTCAGATC 60.057 47.826 0.00 0.00 0.00 2.75
6236 7896 4.411013 CAAAAGGGAAAAGGGTCAGATCT 58.589 43.478 0.00 0.00 0.00 2.75
6237 7897 4.749048 AAAGGGAAAAGGGTCAGATCTT 57.251 40.909 0.00 0.00 0.00 2.40
6238 7898 3.728385 AGGGAAAAGGGTCAGATCTTG 57.272 47.619 0.00 0.00 0.00 3.02
6239 7899 3.260205 AGGGAAAAGGGTCAGATCTTGA 58.740 45.455 0.00 0.00 0.00 3.02
6240 7900 3.657727 AGGGAAAAGGGTCAGATCTTGAA 59.342 43.478 0.00 0.00 37.61 2.69
6241 7901 4.106341 AGGGAAAAGGGTCAGATCTTGAAA 59.894 41.667 0.00 0.00 37.61 2.69
6242 7902 4.832823 GGGAAAAGGGTCAGATCTTGAAAA 59.167 41.667 0.00 0.00 37.61 2.29
6243 7903 5.304357 GGGAAAAGGGTCAGATCTTGAAAAA 59.696 40.000 0.00 0.00 37.61 1.94
6288 7948 8.709386 ATCTTGAATAGATATCATGTAACGCC 57.291 34.615 5.32 0.00 41.89 5.68
6289 7949 7.097192 TCTTGAATAGATATCATGTAACGCCC 58.903 38.462 5.32 0.00 0.00 6.13
6290 7950 6.605471 TGAATAGATATCATGTAACGCCCT 57.395 37.500 5.32 0.00 0.00 5.19
6291 7951 6.631016 TGAATAGATATCATGTAACGCCCTC 58.369 40.000 5.32 0.00 0.00 4.30
6292 7952 3.577649 AGATATCATGTAACGCCCTCG 57.422 47.619 5.32 0.00 42.43 4.63
6293 7953 3.154710 AGATATCATGTAACGCCCTCGA 58.845 45.455 5.32 0.00 39.41 4.04
6294 7954 3.764434 AGATATCATGTAACGCCCTCGAT 59.236 43.478 5.32 0.00 39.41 3.59
6295 7955 2.154854 ATCATGTAACGCCCTCGATG 57.845 50.000 0.00 0.00 39.41 3.84
6296 7956 0.529773 TCATGTAACGCCCTCGATGC 60.530 55.000 0.00 0.00 39.41 3.91
6303 7963 2.970639 GCCCTCGATGCGGCTATA 59.029 61.111 10.26 0.00 42.21 1.31
6304 7964 1.517832 GCCCTCGATGCGGCTATAT 59.482 57.895 10.26 0.00 42.21 0.86
6305 7965 0.528684 GCCCTCGATGCGGCTATATC 60.529 60.000 10.26 0.00 42.21 1.63
6306 7966 1.107114 CCCTCGATGCGGCTATATCT 58.893 55.000 0.00 0.00 0.00 1.98
6307 7967 1.066303 CCCTCGATGCGGCTATATCTC 59.934 57.143 0.00 0.00 0.00 2.75
6308 7968 1.066303 CCTCGATGCGGCTATATCTCC 59.934 57.143 0.00 0.00 0.00 3.71
6309 7969 2.020720 CTCGATGCGGCTATATCTCCT 58.979 52.381 0.00 0.00 0.00 3.69
6310 7970 3.206964 CTCGATGCGGCTATATCTCCTA 58.793 50.000 0.00 0.00 0.00 2.94
6311 7971 3.818210 CTCGATGCGGCTATATCTCCTAT 59.182 47.826 0.00 0.00 0.00 2.57
6312 7972 3.565902 TCGATGCGGCTATATCTCCTATG 59.434 47.826 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 0.664166 ACGCGCATTGCTGAAAAAGG 60.664 50.000 5.73 0.00 43.27 3.11
123 124 8.873186 ATTTAATGGACCCTATTTATTACCGG 57.127 34.615 0.00 0.00 0.00 5.28
202 203 2.361094 TAAAAGCGCGATATTGCACG 57.639 45.000 12.10 0.80 34.15 5.34
212 213 2.884663 TACACCATGTTAAAAGCGCG 57.115 45.000 0.00 0.00 0.00 6.86
268 269 3.139077 ACTTGGTAAGAACGGAAAGCAG 58.861 45.455 0.00 0.00 0.00 4.24
298 299 3.964909 ACGAAAAAGACTCATGTTTGGC 58.035 40.909 0.00 0.00 0.00 4.52
311 538 8.166066 CCTTTTGTTTTACTCCAAACGAAAAAG 58.834 33.333 11.16 11.27 44.18 2.27
402 657 1.228154 GGACTTGGTGGTGGTGGAC 60.228 63.158 0.00 0.00 0.00 4.02
414 669 1.597663 GGCGTATCGAAATGGGACTTG 59.402 52.381 0.00 0.00 0.00 3.16
466 724 3.361977 CACTTGGAAACGCCCCCG 61.362 66.667 0.00 0.00 41.14 5.73
467 725 0.898326 ATTCACTTGGAAACGCCCCC 60.898 55.000 0.00 0.00 39.39 5.40
477 735 4.401519 AGGCTTTGATGATGATTCACTTGG 59.598 41.667 0.00 0.00 33.85 3.61
482 740 7.776500 TCTGATTAAGGCTTTGATGATGATTCA 59.224 33.333 4.45 0.00 36.00 2.57
528 786 4.455606 AGTGTTAATCTCCTGCCATTAGC 58.544 43.478 0.00 0.00 44.14 3.09
550 809 1.083489 GACGATCCATGCAAAACGGA 58.917 50.000 0.00 0.00 0.00 4.69
553 812 6.399986 GCTTTTTAAGACGATCCATGCAAAAC 60.400 38.462 0.00 0.00 0.00 2.43
567 826 6.530181 CCCGTTCCATTAATGCTTTTTAAGAC 59.470 38.462 10.11 0.00 0.00 3.01
603 863 1.610379 AGCATGCCTTTTGGGTCCC 60.610 57.895 15.66 0.00 40.82 4.46
622 882 1.804748 CCACTTCTCCCTACGTTTTGC 59.195 52.381 0.00 0.00 0.00 3.68
634 894 1.212229 GACGGACGGACCACTTCTC 59.788 63.158 0.00 0.00 38.90 2.87
646 906 2.047560 CTTTCGGGTGGGACGGAC 60.048 66.667 0.00 0.00 0.00 4.79
647 907 4.011517 GCTTTCGGGTGGGACGGA 62.012 66.667 0.00 0.00 0.00 4.69
648 908 3.835790 TTGCTTTCGGGTGGGACGG 62.836 63.158 0.00 0.00 0.00 4.79
649 909 2.281208 TTGCTTTCGGGTGGGACG 60.281 61.111 0.00 0.00 0.00 4.79
650 910 2.613506 CGTTGCTTTCGGGTGGGAC 61.614 63.158 0.00 0.00 0.00 4.46
721 990 2.112279 ATACATACACCGGGGGATGT 57.888 50.000 36.15 36.15 36.52 3.06
732 1001 5.711506 CGGTGGGTGTAGGTATATACATACA 59.288 44.000 27.87 27.87 46.98 2.29
733 1002 5.711976 ACGGTGGGTGTAGGTATATACATAC 59.288 44.000 24.18 24.18 42.09 2.39
734 1003 5.891198 ACGGTGGGTGTAGGTATATACATA 58.109 41.667 14.70 9.10 37.93 2.29
735 1004 4.744237 ACGGTGGGTGTAGGTATATACAT 58.256 43.478 14.70 10.16 37.93 2.29
736 1005 4.183223 ACGGTGGGTGTAGGTATATACA 57.817 45.455 14.70 0.00 33.30 2.29
750 1019 1.662044 GCGTAGGGTATACGGTGGG 59.338 63.158 9.23 0.00 40.86 4.61
842 1111 4.200283 CACCTCTCTCGGCTCGGC 62.200 72.222 0.00 0.00 0.00 5.54
864 1133 1.061887 GTGCGTCTCTCTCTCTCGC 59.938 63.158 0.00 0.00 45.70 5.03
865 1134 1.346879 CGTGCGTCTCTCTCTCTCG 59.653 63.158 0.00 0.00 0.00 4.04
866 1135 1.061887 GCGTGCGTCTCTCTCTCTC 59.938 63.158 0.00 0.00 0.00 3.20
867 1136 1.643868 CTGCGTGCGTCTCTCTCTCT 61.644 60.000 0.00 0.00 0.00 3.10
868 1137 1.226267 CTGCGTGCGTCTCTCTCTC 60.226 63.158 0.00 0.00 0.00 3.20
869 1138 2.874019 CTGCGTGCGTCTCTCTCT 59.126 61.111 0.00 0.00 0.00 3.10
870 1139 2.878520 GCTGCGTGCGTCTCTCTC 60.879 66.667 0.00 0.00 0.00 3.20
879 1148 3.488978 CTCTGCTCTGCTGCGTGC 61.489 66.667 10.14 10.14 43.25 5.34
880 1149 3.488978 GCTCTGCTCTGCTGCGTG 61.489 66.667 0.00 0.00 35.36 5.34
990 1263 2.350498 AGTTGCATACATTTACGGCGAC 59.650 45.455 16.62 0.00 38.78 5.19
1007 1280 2.356667 GAAGGGGCAGGGGAGTTG 59.643 66.667 0.00 0.00 0.00 3.16
1027 1300 0.929244 ATTTCTGATGGGTGAGGGGG 59.071 55.000 0.00 0.00 0.00 5.40
1028 1301 1.849039 AGATTTCTGATGGGTGAGGGG 59.151 52.381 0.00 0.00 0.00 4.79
1035 1308 2.776536 AGGACTCCAGATTTCTGATGGG 59.223 50.000 9.15 0.00 46.59 4.00
1052 1325 4.443913 AGAAGAAGAAGAAGCGTAGGAC 57.556 45.455 0.00 0.00 0.00 3.85
1071 1344 1.595993 CGCACGGAGGAGGAAGAAGA 61.596 60.000 0.00 0.00 0.00 2.87
1072 1345 1.153745 CGCACGGAGGAGGAAGAAG 60.154 63.158 0.00 0.00 0.00 2.85
1073 1346 2.970639 CGCACGGAGGAGGAAGAA 59.029 61.111 0.00 0.00 0.00 2.52
1074 1347 3.760035 GCGCACGGAGGAGGAAGA 61.760 66.667 0.30 0.00 0.00 2.87
1162 1435 3.868077 CCGGCTCAAGAACAAGAAGATAG 59.132 47.826 0.00 0.00 0.00 2.08
1179 1452 2.360439 TACCCAAAAACAGGCCGGCT 62.360 55.000 28.56 9.77 0.00 5.52
1183 1456 0.113580 TCCCTACCCAAAAACAGGCC 59.886 55.000 0.00 0.00 0.00 5.19
1184 1457 2.231716 ATCCCTACCCAAAAACAGGC 57.768 50.000 0.00 0.00 0.00 4.85
1185 1458 2.752903 CGAATCCCTACCCAAAAACAGG 59.247 50.000 0.00 0.00 0.00 4.00
1186 1459 2.752903 CCGAATCCCTACCCAAAAACAG 59.247 50.000 0.00 0.00 0.00 3.16
1187 1460 2.555670 CCCGAATCCCTACCCAAAAACA 60.556 50.000 0.00 0.00 0.00 2.83
1188 1461 2.097036 CCCGAATCCCTACCCAAAAAC 58.903 52.381 0.00 0.00 0.00 2.43
1215 1488 0.534412 AGATCGAACCTGCCTGACAG 59.466 55.000 0.00 0.00 46.77 3.51
1216 1489 0.532573 GAGATCGAACCTGCCTGACA 59.467 55.000 0.00 0.00 0.00 3.58
1217 1490 0.179097 GGAGATCGAACCTGCCTGAC 60.179 60.000 0.00 0.00 0.00 3.51
1218 1491 1.667154 CGGAGATCGAACCTGCCTGA 61.667 60.000 0.00 0.00 42.43 3.86
1219 1492 1.227089 CGGAGATCGAACCTGCCTG 60.227 63.158 0.00 0.00 42.43 4.85
1220 1493 3.082579 GCGGAGATCGAACCTGCCT 62.083 63.158 0.00 0.00 42.43 4.75
1221 1494 2.586357 GCGGAGATCGAACCTGCC 60.586 66.667 0.00 0.00 42.43 4.85
1222 1495 2.579684 AAGGCGGAGATCGAACCTGC 62.580 60.000 7.17 7.17 42.43 4.85
1267 1540 9.200817 CCCATTTATTTCAATCCTAGGAAAGAA 57.799 33.333 17.30 18.84 36.55 2.52
1268 1541 8.565239 TCCCATTTATTTCAATCCTAGGAAAGA 58.435 33.333 17.30 13.80 36.55 2.52
1269 1542 8.766994 TCCCATTTATTTCAATCCTAGGAAAG 57.233 34.615 17.30 11.50 36.55 2.62
1270 1543 9.146586 CATCCCATTTATTTCAATCCTAGGAAA 57.853 33.333 17.30 5.75 37.41 3.13
1292 1569 3.093278 CGCAGAGAAACGGCATCC 58.907 61.111 0.00 0.00 39.54 3.51
1298 1575 0.165944 AAATTCCGCGCAGAGAAACG 59.834 50.000 8.75 0.00 0.00 3.60
1408 1693 1.003233 AGCAGAGAAACGGAAGGGC 60.003 57.895 0.00 0.00 0.00 5.19
1488 1773 4.261363 GCAAGAACAGGAAAAGAGGACTTG 60.261 45.833 0.00 0.00 36.39 3.16
1530 1816 1.009829 CTGCGGGAGAAGAAATTCCG 58.990 55.000 0.00 0.00 37.93 4.30
1583 1869 3.437049 CCTCCAAATTCGACTTCTTGGAC 59.563 47.826 10.95 0.00 41.83 4.02
1584 1870 3.326588 TCCTCCAAATTCGACTTCTTGGA 59.673 43.478 13.26 13.26 43.91 3.53
1594 1880 4.437390 CCGACATTTTCTCCTCCAAATTCG 60.437 45.833 0.00 0.00 0.00 3.34
1653 1942 4.918810 AAAAAGAACACGCAAGAAGGAT 57.081 36.364 0.00 0.00 43.62 3.24
1953 2602 4.351938 TCGTCGTGCTTGTCGGGG 62.352 66.667 0.00 0.00 0.00 5.73
1997 2646 4.629523 GGGGGTGGTTTCGCGACA 62.630 66.667 9.15 0.00 0.00 4.35
2011 2660 4.323417 GCAAAAACAAAAGGATAAGGGGG 58.677 43.478 0.00 0.00 0.00 5.40
2040 2689 5.346822 GCATTTCACAAAGCTATCCAAACAG 59.653 40.000 0.00 0.00 0.00 3.16
2054 2703 3.438216 TCAGATCCTGGCATTTCACAA 57.562 42.857 0.00 0.00 31.51 3.33
2083 2732 5.443283 AGAACCTGCATCACACATTCATAT 58.557 37.500 0.00 0.00 0.00 1.78
2212 2862 1.850377 TGCATTTTTGTTGCAGGTCG 58.150 45.000 0.00 0.00 44.73 4.79
2225 2875 4.070716 CAGAGACTCCTTGTTCTGCATTT 58.929 43.478 0.00 0.00 31.98 2.32
2226 2876 3.672808 CAGAGACTCCTTGTTCTGCATT 58.327 45.455 0.00 0.00 31.98 3.56
2253 2903 2.029739 TGAACGAGTCGAATGTTAGGCA 60.030 45.455 21.50 0.76 0.00 4.75
2268 2918 3.417069 AAATCCTGACCACATGAACGA 57.583 42.857 0.00 0.00 0.00 3.85
2274 2924 5.139727 TCAAACTCAAAATCCTGACCACAT 58.860 37.500 0.00 0.00 0.00 3.21
2470 3120 0.251634 CAGGCAGGGAACTTCTCTCC 59.748 60.000 0.00 0.00 40.21 3.71
2541 3191 2.017049 GATTCACATACCACACCCTGC 58.983 52.381 0.00 0.00 0.00 4.85
2568 3218 7.284919 TCAAGATATACAAGCGTAGATGGAA 57.715 36.000 0.00 0.00 29.68 3.53
2570 3220 7.487509 CAGATCAAGATATACAAGCGTAGATGG 59.512 40.741 0.00 0.00 29.68 3.51
2571 3221 8.026026 ACAGATCAAGATATACAAGCGTAGATG 58.974 37.037 0.00 0.00 29.68 2.90
2572 3222 8.116651 ACAGATCAAGATATACAAGCGTAGAT 57.883 34.615 0.00 0.00 32.21 1.98
2600 3250 7.808381 TGAGAACACATTCAACAAAACGTTAAA 59.192 29.630 0.00 0.00 37.29 1.52
2623 3273 5.068234 AGCATGACAAAACCATTGATGAG 57.932 39.130 0.00 0.00 0.00 2.90
2633 3283 3.733443 AAACCCTGAGCATGACAAAAC 57.267 42.857 0.00 0.00 0.00 2.43
2644 3297 8.421002 TCTTGGAGAAATTTTTAAAACCCTGAG 58.579 33.333 0.00 0.00 0.00 3.35
2645 3298 8.201464 GTCTTGGAGAAATTTTTAAAACCCTGA 58.799 33.333 0.00 0.00 0.00 3.86
2657 3310 3.575687 CCCTTGCAGTCTTGGAGAAATTT 59.424 43.478 0.00 0.00 0.00 1.82
2736 3389 2.182284 GCATGAAGCATTGCGGCA 59.818 55.556 0.00 0.00 44.79 5.69
2757 3410 0.458889 CGCTCCACCATGCCAAAATG 60.459 55.000 0.00 0.00 0.00 2.32
2758 3411 0.899717 ACGCTCCACCATGCCAAAAT 60.900 50.000 0.00 0.00 0.00 1.82
2805 3458 7.804129 GCATTTACAACAAACATTTGATGCAAT 59.196 29.630 11.24 8.49 42.52 3.56
3080 3735 2.036992 TCACAACAAATGGAATGGGCAC 59.963 45.455 0.00 0.00 0.00 5.01
3082 3737 3.615224 ATCACAACAAATGGAATGGGC 57.385 42.857 0.00 0.00 0.00 5.36
3089 3744 4.794762 CGAAGCATGTATCACAACAAATGG 59.205 41.667 0.00 0.00 32.02 3.16
3095 3750 1.064060 GGCCGAAGCATGTATCACAAC 59.936 52.381 0.00 0.00 42.56 3.32
3107 3770 2.394563 GCAGAGAACAGGCCGAAGC 61.395 63.158 0.00 0.00 38.76 3.86
3172 3835 2.241176 TGAACCACCAAGAAACTCTGGT 59.759 45.455 0.00 0.00 31.26 4.00
3211 3874 1.652947 TAGACCCAAGACAACCTCCC 58.347 55.000 0.00 0.00 0.00 4.30
3275 3938 7.602644 ACGAAGACATTCACATAATTACAGTGT 59.397 33.333 15.58 0.00 34.94 3.55
3280 3943 9.425893 CATTGACGAAGACATTCACATAATTAC 57.574 33.333 0.00 0.00 34.94 1.89
3293 3956 6.671614 AAAAACAGTACATTGACGAAGACA 57.328 33.333 0.00 0.00 0.00 3.41
3342 4010 6.113411 AGGGAACATGTATAAGCAGTTGTAC 58.887 40.000 0.00 0.00 32.34 2.90
3343 4011 6.308015 AGGGAACATGTATAAGCAGTTGTA 57.692 37.500 0.00 0.00 0.00 2.41
3344 4012 5.179452 AGGGAACATGTATAAGCAGTTGT 57.821 39.130 0.00 0.00 0.00 3.32
3347 4015 5.570320 ACAAAGGGAACATGTATAAGCAGT 58.430 37.500 0.00 0.00 31.81 4.40
3350 4019 5.823045 AGCTACAAAGGGAACATGTATAAGC 59.177 40.000 0.00 0.00 35.32 3.09
3362 4031 4.901197 TTGTGTATCAGCTACAAAGGGA 57.099 40.909 0.00 0.00 41.93 4.20
3365 4034 6.036470 TCGAGATTGTGTATCAGCTACAAAG 58.964 40.000 3.25 0.00 41.93 2.77
3387 4056 3.114616 CGCACAGAACCAGCCTCG 61.115 66.667 0.00 0.00 0.00 4.63
3403 4072 2.874701 CAGAAACTGGCTTGATATCCCG 59.125 50.000 0.00 0.00 0.00 5.14
3462 4131 2.816087 TCAGAATCTTGCCTTCAACTGC 59.184 45.455 0.00 0.00 0.00 4.40
3494 4163 7.928307 TCAGTTAGATTTTAGCTTGAATGCT 57.072 32.000 0.00 0.00 46.11 3.79
3495 4164 9.017669 CAATCAGTTAGATTTTAGCTTGAATGC 57.982 33.333 0.00 0.00 44.48 3.56
3507 4176 7.609532 AGTTAGAAGCAGCAATCAGTTAGATTT 59.390 33.333 0.00 0.00 44.48 2.17
3514 4183 6.396829 AAAAAGTTAGAAGCAGCAATCAGT 57.603 33.333 0.00 0.00 0.00 3.41
3562 4231 1.945394 GATGTGTCACTCATCATGCCC 59.055 52.381 13.84 0.00 40.68 5.36
3598 4267 5.826737 GGATCCAAAGTCATCAACATCTGAT 59.173 40.000 6.95 0.00 46.25 2.90
3601 4270 5.045359 TGAGGATCCAAAGTCATCAACATCT 60.045 40.000 15.82 0.00 33.94 2.90
3626 4295 3.335579 ACTCAGCACCTTTCGGAATAAC 58.664 45.455 0.00 0.00 0.00 1.89
3686 4355 6.430000 AGGTGTACGAAACAAGAATAAAGCAT 59.570 34.615 0.00 0.00 40.63 3.79
3700 4369 4.530710 AGCTAATCACAGGTGTACGAAA 57.469 40.909 0.00 0.00 0.00 3.46
3708 4377 7.094205 CCAAATAGAACAAAGCTAATCACAGGT 60.094 37.037 0.00 0.00 0.00 4.00
3709 4378 7.253422 CCAAATAGAACAAAGCTAATCACAGG 58.747 38.462 0.00 0.00 0.00 4.00
3710 4379 6.749118 GCCAAATAGAACAAAGCTAATCACAG 59.251 38.462 0.00 0.00 0.00 3.66
3763 4432 7.982761 ACGATTAAAATAAGTTGTGGTGGTA 57.017 32.000 0.00 0.00 0.00 3.25
3764 4433 6.887626 ACGATTAAAATAAGTTGTGGTGGT 57.112 33.333 0.00 0.00 0.00 4.16
4006 4682 9.191995 AGTTAAATAAGAAAAATGCAACGGAAG 57.808 29.630 0.00 0.00 0.00 3.46
4038 4714 4.472286 GCAAGCTGCGTAACAATTAAAGA 58.528 39.130 0.00 0.00 31.71 2.52
4105 4781 6.183361 TGGAATCTTAGGCTAGAGCAATCAAT 60.183 38.462 3.54 0.00 44.36 2.57
4109 5697 4.904251 TCTGGAATCTTAGGCTAGAGCAAT 59.096 41.667 3.54 0.00 44.36 3.56
4145 5733 9.520515 ACACAGATTATTTTGGTCAAATAGACT 57.479 29.630 0.00 0.00 46.72 3.24
4173 5761 4.771590 TGCAGCTCTTGAATTTACAAGG 57.228 40.909 0.00 0.00 44.84 3.61
4182 5770 4.389890 AACAAACAATGCAGCTCTTGAA 57.610 36.364 13.30 0.00 0.00 2.69
4346 5935 4.906618 TGACCTGTACTTCATTCTTTCCC 58.093 43.478 0.00 0.00 0.00 3.97
4372 5961 2.385803 ACTGTTCCTGGGAGGTATACG 58.614 52.381 0.00 0.00 36.53 3.06
4381 5970 1.604593 CAGGGCAACTGTTCCTGGG 60.605 63.158 16.58 0.00 43.09 4.45
4477 6067 2.423577 ACTATCACCAACGAGGCAAAC 58.576 47.619 0.00 0.00 43.14 2.93
4486 6076 5.345702 TCGTGCAAGTATACTATCACCAAC 58.654 41.667 21.81 9.00 0.00 3.77
4540 6130 7.997773 ACTGGATCAATTGATGGATTCATAG 57.002 36.000 25.37 14.34 34.37 2.23
4591 6185 7.872483 CCTGCCATTAGTAGAACAAACAAAATT 59.128 33.333 0.00 0.00 0.00 1.82
4633 6227 1.668419 GGACGATTGAACCATCCAGG 58.332 55.000 0.00 0.00 45.67 4.45
4636 6230 1.867233 CATCGGACGATTGAACCATCC 59.133 52.381 4.20 0.00 31.62 3.51
4816 6410 1.593469 CAAGCACTCATCTCATCAGCG 59.407 52.381 0.00 0.00 0.00 5.18
4864 6458 4.539152 GCAAGATGGTTGCACACG 57.461 55.556 4.87 0.00 44.34 4.49
4990 6584 5.317733 ACTCTCAAGTCTGATTCGGTTAG 57.682 43.478 0.00 0.00 0.00 2.34
4991 6585 5.477291 AGAACTCTCAAGTCTGATTCGGTTA 59.523 40.000 0.00 0.00 33.48 2.85
4992 6586 4.282195 AGAACTCTCAAGTCTGATTCGGTT 59.718 41.667 0.00 0.00 33.48 4.44
5019 6634 0.962356 GAGACACATGCCCCAACTGG 60.962 60.000 0.00 0.00 0.00 4.00
5020 6635 0.962356 GGAGACACATGCCCCAACTG 60.962 60.000 0.00 0.00 0.00 3.16
5021 6636 1.380302 GGAGACACATGCCCCAACT 59.620 57.895 0.00 0.00 0.00 3.16
5022 6637 0.962356 CTGGAGACACATGCCCCAAC 60.962 60.000 0.00 0.00 35.60 3.77
5023 6638 1.379916 CTGGAGACACATGCCCCAA 59.620 57.895 0.00 0.00 35.60 4.12
5024 6639 1.426251 AACTGGAGACACATGCCCCA 61.426 55.000 0.00 0.00 35.60 4.96
5025 6640 0.251341 AAACTGGAGACACATGCCCC 60.251 55.000 0.00 0.00 35.60 5.80
5039 6654 8.522830 TCAAATAGCTTTGAGGGATAAAAACTG 58.477 33.333 0.00 0.00 44.46 3.16
5067 6719 5.695816 GCATCCACAAAGAAGCAAAACAATA 59.304 36.000 0.00 0.00 30.94 1.90
5102 6754 6.590292 TCAAACAACCAAAACTTCGCATAAAA 59.410 30.769 0.00 0.00 0.00 1.52
5121 6773 1.542472 CATGCAGTGCCTGATCAAACA 59.458 47.619 14.56 0.00 32.44 2.83
5122 6774 2.273370 CATGCAGTGCCTGATCAAAC 57.727 50.000 14.56 0.00 32.44 2.93
5200 6852 0.243095 GACGGCGTACCTTGACTCTT 59.757 55.000 14.74 0.00 0.00 2.85
5242 6895 5.342259 GCACGAGTTCATTTTGGAATACAAC 59.658 40.000 0.00 0.00 39.19 3.32
5262 6915 3.958147 AAGCATCGGGGTGAGCACG 62.958 63.158 0.00 0.00 0.00 5.34
5323 6976 1.758514 GCCTCGGACCAGATCAGGA 60.759 63.158 11.72 0.00 0.00 3.86
5399 7052 3.132139 TTCTCTCGAGCCGGACGG 61.132 66.667 5.05 6.35 38.57 4.79
5400 7053 2.100603 GTTCTCTCGAGCCGGACG 59.899 66.667 5.05 10.80 0.00 4.79
5495 7148 9.226606 CCGGGCTCAAAATATGAACTAATAATA 57.773 33.333 0.00 0.00 37.67 0.98
5496 7149 7.724061 ACCGGGCTCAAAATATGAACTAATAAT 59.276 33.333 6.32 0.00 37.67 1.28
5529 7182 2.685380 AAGGTGAGCGAGGGGGAG 60.685 66.667 0.00 0.00 0.00 4.30
5530 7183 2.683933 GAAGGTGAGCGAGGGGGA 60.684 66.667 0.00 0.00 0.00 4.81
5542 7200 3.157680 CGTTCACCAGGGGAAGGT 58.842 61.111 15.11 0.00 40.85 3.50
5582 7240 2.602660 CACACTTTCGGCCAACAAAAAG 59.397 45.455 2.24 6.77 35.38 2.27
5603 7261 1.449246 AGCCGCAGCAGAGATTCAC 60.449 57.895 0.00 0.00 43.56 3.18
5654 7312 4.204028 ATTCCATTCCCGCCCCCG 62.204 66.667 0.00 0.00 0.00 5.73
5655 7313 2.203494 GATTCCATTCCCGCCCCC 60.203 66.667 0.00 0.00 0.00 5.40
5656 7314 2.203494 GGATTCCATTCCCGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
5657 7315 2.594592 CGGATTCCATTCCCGCCC 60.595 66.667 3.09 0.00 36.62 6.13
5658 7316 1.453197 AACGGATTCCATTCCCGCC 60.453 57.895 3.09 0.00 46.54 6.13
5676 7334 1.124780 TTCCGGTCAGTCAAACCTCA 58.875 50.000 0.00 0.00 34.45 3.86
5692 7350 1.795286 CTGTCACTCGCTGTTCTTTCC 59.205 52.381 0.00 0.00 0.00 3.13
5718 7376 3.200593 CACCATCAGCTCAGCGGC 61.201 66.667 0.00 0.00 0.00 6.53
5733 7391 3.994931 ACCCCTACCATTTACAGACAC 57.005 47.619 0.00 0.00 0.00 3.67
5753 7413 2.532250 TCAGATCAGAGGTGGCAGTA 57.468 50.000 0.00 0.00 0.00 2.74
5781 7441 8.393366 CACAATAACCTATCATCAGTTGAGTTG 58.607 37.037 0.00 0.00 37.89 3.16
5782 7442 8.321353 TCACAATAACCTATCATCAGTTGAGTT 58.679 33.333 0.00 0.00 37.89 3.01
5783 7443 7.851228 TCACAATAACCTATCATCAGTTGAGT 58.149 34.615 0.00 0.00 37.89 3.41
5784 7444 8.771766 CATCACAATAACCTATCATCAGTTGAG 58.228 37.037 0.00 0.00 37.89 3.02
5785 7445 7.716560 CCATCACAATAACCTATCATCAGTTGA 59.283 37.037 0.00 0.00 39.12 3.18
5786 7446 7.040892 CCCATCACAATAACCTATCATCAGTTG 60.041 40.741 0.00 0.00 0.00 3.16
5825 7485 0.626382 ACGAGATCTCTGGAGACCCA 59.374 55.000 20.26 0.00 40.75 4.51
5954 7614 4.814294 CGGGTCACGCACTAGGGC 62.814 72.222 6.99 6.99 34.82 5.19
6017 7677 3.501828 GGGTCAAAACATGGAATTTTGCC 59.498 43.478 12.74 14.86 43.62 4.52
6053 7713 9.484806 AGGGTCAGATCTGAAAAATATTCAAAT 57.515 29.630 26.70 0.00 41.85 2.32
6054 7714 8.884124 AGGGTCAGATCTGAAAAATATTCAAA 57.116 30.769 26.70 0.00 41.85 2.69
6055 7715 8.884124 AAGGGTCAGATCTGAAAAATATTCAA 57.116 30.769 26.70 0.00 41.85 2.69
6056 7716 8.884124 AAAGGGTCAGATCTGAAAAATATTCA 57.116 30.769 26.70 0.00 41.85 2.57
6057 7717 9.578439 CAAAAGGGTCAGATCTGAAAAATATTC 57.422 33.333 26.70 11.58 41.85 1.75
6058 7718 8.037166 GCAAAAGGGTCAGATCTGAAAAATATT 58.963 33.333 26.70 14.34 41.85 1.28
6059 7719 7.398332 AGCAAAAGGGTCAGATCTGAAAAATAT 59.602 33.333 26.70 9.83 41.85 1.28
6060 7720 6.721208 AGCAAAAGGGTCAGATCTGAAAAATA 59.279 34.615 26.70 0.75 41.85 1.40
6061 7721 5.541484 AGCAAAAGGGTCAGATCTGAAAAAT 59.459 36.000 26.70 11.22 41.85 1.82
6062 7722 4.895297 AGCAAAAGGGTCAGATCTGAAAAA 59.105 37.500 26.70 1.98 41.85 1.94
6063 7723 4.473444 AGCAAAAGGGTCAGATCTGAAAA 58.527 39.130 26.70 2.39 41.85 2.29
6064 7724 4.104383 AGCAAAAGGGTCAGATCTGAAA 57.896 40.909 26.70 3.20 41.85 2.69
6065 7725 3.795688 AGCAAAAGGGTCAGATCTGAA 57.204 42.857 26.70 8.77 41.85 3.02
6066 7726 4.442052 CGATAGCAAAAGGGTCAGATCTGA 60.442 45.833 21.67 21.67 37.24 3.27
6067 7727 3.806521 CGATAGCAAAAGGGTCAGATCTG 59.193 47.826 17.07 17.07 0.00 2.90
6068 7728 3.452627 ACGATAGCAAAAGGGTCAGATCT 59.547 43.478 0.00 0.00 42.67 2.75
6069 7729 3.798202 ACGATAGCAAAAGGGTCAGATC 58.202 45.455 0.00 0.00 42.67 2.75
6070 7730 3.452627 AGACGATAGCAAAAGGGTCAGAT 59.547 43.478 0.00 0.00 42.67 2.90
6071 7731 2.832129 AGACGATAGCAAAAGGGTCAGA 59.168 45.455 0.00 0.00 42.67 3.27
6072 7732 3.252974 AGACGATAGCAAAAGGGTCAG 57.747 47.619 0.00 0.00 42.67 3.51
6073 7733 3.695830 AAGACGATAGCAAAAGGGTCA 57.304 42.857 0.00 0.00 42.67 4.02
6074 7734 4.723248 CAAAAGACGATAGCAAAAGGGTC 58.277 43.478 0.00 0.00 42.67 4.46
6075 7735 3.057526 GCAAAAGACGATAGCAAAAGGGT 60.058 43.478 0.00 0.00 42.67 4.34
6076 7736 3.191371 AGCAAAAGACGATAGCAAAAGGG 59.809 43.478 0.00 0.00 42.67 3.95
6077 7737 4.425577 AGCAAAAGACGATAGCAAAAGG 57.574 40.909 0.00 0.00 42.67 3.11
6078 7738 7.023575 ACAATAGCAAAAGACGATAGCAAAAG 58.976 34.615 0.00 0.00 42.67 2.27
6079 7739 6.908825 ACAATAGCAAAAGACGATAGCAAAA 58.091 32.000 0.00 0.00 42.67 2.44
6080 7740 6.148645 TGACAATAGCAAAAGACGATAGCAAA 59.851 34.615 0.00 0.00 42.67 3.68
6081 7741 5.641636 TGACAATAGCAAAAGACGATAGCAA 59.358 36.000 0.00 0.00 42.67 3.91
6082 7742 5.175127 TGACAATAGCAAAAGACGATAGCA 58.825 37.500 0.00 0.00 42.67 3.49
6083 7743 5.718649 TGACAATAGCAAAAGACGATAGC 57.281 39.130 0.00 0.00 42.67 2.97
6084 7744 6.258727 ACCATGACAATAGCAAAAGACGATAG 59.741 38.462 0.00 0.00 46.19 2.08
6085 7745 6.112734 ACCATGACAATAGCAAAAGACGATA 58.887 36.000 0.00 0.00 0.00 2.92
6086 7746 4.943705 ACCATGACAATAGCAAAAGACGAT 59.056 37.500 0.00 0.00 0.00 3.73
6087 7747 4.323417 ACCATGACAATAGCAAAAGACGA 58.677 39.130 0.00 0.00 0.00 4.20
6088 7748 4.685169 ACCATGACAATAGCAAAAGACG 57.315 40.909 0.00 0.00 0.00 4.18
6089 7749 5.630680 CACAACCATGACAATAGCAAAAGAC 59.369 40.000 0.00 0.00 0.00 3.01
6090 7750 5.301551 ACACAACCATGACAATAGCAAAAGA 59.698 36.000 0.00 0.00 0.00 2.52
6091 7751 5.531634 ACACAACCATGACAATAGCAAAAG 58.468 37.500 0.00 0.00 0.00 2.27
6092 7752 5.528043 ACACAACCATGACAATAGCAAAA 57.472 34.783 0.00 0.00 0.00 2.44
6093 7753 5.528043 AACACAACCATGACAATAGCAAA 57.472 34.783 0.00 0.00 0.00 3.68
6094 7754 5.528043 AAACACAACCATGACAATAGCAA 57.472 34.783 0.00 0.00 0.00 3.91
6095 7755 6.641169 TTAAACACAACCATGACAATAGCA 57.359 33.333 0.00 0.00 0.00 3.49
6096 7756 8.458843 AGTATTAAACACAACCATGACAATAGC 58.541 33.333 0.00 0.00 0.00 2.97
6100 7760 8.293867 GCTAAGTATTAAACACAACCATGACAA 58.706 33.333 0.00 0.00 0.00 3.18
6101 7761 7.445707 TGCTAAGTATTAAACACAACCATGACA 59.554 33.333 0.00 0.00 0.00 3.58
6102 7762 7.812648 TGCTAAGTATTAAACACAACCATGAC 58.187 34.615 0.00 0.00 0.00 3.06
6103 7763 7.987750 TGCTAAGTATTAAACACAACCATGA 57.012 32.000 0.00 0.00 0.00 3.07
6104 7764 9.469807 TTTTGCTAAGTATTAAACACAACCATG 57.530 29.630 0.00 0.00 0.00 3.66
6128 7788 9.709387 AGGGTTGCATACCTTACTATAAAATTT 57.291 29.630 14.91 0.00 46.86 1.82
6132 7792 8.308931 CGATAGGGTTGCATACCTTACTATAAA 58.691 37.037 14.13 0.00 46.86 1.40
6133 7793 7.578189 GCGATAGGGTTGCATACCTTACTATAA 60.578 40.741 14.13 0.00 46.86 0.98
6134 7794 6.127535 GCGATAGGGTTGCATACCTTACTATA 60.128 42.308 14.13 0.00 46.86 1.31
6135 7795 5.337330 GCGATAGGGTTGCATACCTTACTAT 60.337 44.000 14.13 12.48 46.86 2.12
6136 7796 4.021719 GCGATAGGGTTGCATACCTTACTA 60.022 45.833 14.13 9.09 46.86 1.82
6137 7797 3.244112 GCGATAGGGTTGCATACCTTACT 60.244 47.826 14.13 7.49 46.86 2.24
6138 7798 3.064931 GCGATAGGGTTGCATACCTTAC 58.935 50.000 14.13 8.49 46.86 2.34
6139 7799 2.038033 GGCGATAGGGTTGCATACCTTA 59.962 50.000 14.13 12.21 46.86 2.69
6140 7800 1.202770 GGCGATAGGGTTGCATACCTT 60.203 52.381 14.13 10.58 46.86 3.50
6141 7801 0.396811 GGCGATAGGGTTGCATACCT 59.603 55.000 13.51 13.51 46.86 3.08
6142 7802 0.107831 TGGCGATAGGGTTGCATACC 59.892 55.000 8.94 8.94 46.99 2.73
6143 7803 1.512926 CTGGCGATAGGGTTGCATAC 58.487 55.000 0.00 0.00 39.13 2.39
6144 7804 0.396435 CCTGGCGATAGGGTTGCATA 59.604 55.000 0.00 0.00 39.13 3.14
6145 7805 1.149174 CCTGGCGATAGGGTTGCAT 59.851 57.895 0.00 0.00 39.13 3.96
6146 7806 2.589540 CCTGGCGATAGGGTTGCA 59.410 61.111 0.00 0.00 39.13 4.08
6152 7812 1.447643 CAAGGTCCCTGGCGATAGG 59.552 63.158 0.00 0.00 37.59 2.57
6153 7813 1.447643 CCAAGGTCCCTGGCGATAG 59.552 63.158 0.00 0.00 0.00 2.08
6154 7814 2.742116 GCCAAGGTCCCTGGCGATA 61.742 63.158 15.91 0.00 39.06 2.92
6155 7815 4.115199 GCCAAGGTCCCTGGCGAT 62.115 66.667 15.91 0.00 39.06 4.58
6167 7827 2.870411 GTTATAACTGCCTACCGCCAAG 59.130 50.000 8.41 0.00 36.24 3.61
6168 7828 2.420408 GGTTATAACTGCCTACCGCCAA 60.420 50.000 15.05 0.00 36.24 4.52
6169 7829 1.139455 GGTTATAACTGCCTACCGCCA 59.861 52.381 15.05 0.00 36.24 5.69
6170 7830 1.415289 AGGTTATAACTGCCTACCGCC 59.585 52.381 15.05 0.00 36.24 6.13
6171 7831 2.904697 AGGTTATAACTGCCTACCGC 57.095 50.000 15.05 0.00 34.09 5.68
6189 7849 1.153168 CCAAGGTCCATGCCCGTAG 60.153 63.158 0.00 0.00 0.00 3.51
6190 7850 2.994699 CCAAGGTCCATGCCCGTA 59.005 61.111 0.00 0.00 0.00 4.02
6191 7851 4.740822 GCCAAGGTCCATGCCCGT 62.741 66.667 0.00 0.00 0.00 5.28
6203 7863 0.608035 TCCCTTTTGCTACCGCCAAG 60.608 55.000 0.00 0.00 34.43 3.61
6204 7864 0.178987 TTCCCTTTTGCTACCGCCAA 60.179 50.000 0.00 0.00 34.43 4.52
6205 7865 0.178987 TTTCCCTTTTGCTACCGCCA 60.179 50.000 0.00 0.00 34.43 5.69
6206 7866 0.963225 TTTTCCCTTTTGCTACCGCC 59.037 50.000 0.00 0.00 34.43 6.13
6207 7867 1.067846 CCTTTTCCCTTTTGCTACCGC 60.068 52.381 0.00 0.00 0.00 5.68
6208 7868 1.544246 CCCTTTTCCCTTTTGCTACCG 59.456 52.381 0.00 0.00 0.00 4.02
6209 7869 2.561419 GACCCTTTTCCCTTTTGCTACC 59.439 50.000 0.00 0.00 0.00 3.18
6210 7870 3.227614 TGACCCTTTTCCCTTTTGCTAC 58.772 45.455 0.00 0.00 0.00 3.58
6211 7871 3.139397 TCTGACCCTTTTCCCTTTTGCTA 59.861 43.478 0.00 0.00 0.00 3.49
6212 7872 2.091333 TCTGACCCTTTTCCCTTTTGCT 60.091 45.455 0.00 0.00 0.00 3.91
6213 7873 2.316108 TCTGACCCTTTTCCCTTTTGC 58.684 47.619 0.00 0.00 0.00 3.68
6214 7874 4.411013 AGATCTGACCCTTTTCCCTTTTG 58.589 43.478 0.00 0.00 0.00 2.44
6215 7875 4.749048 AGATCTGACCCTTTTCCCTTTT 57.251 40.909 0.00 0.00 0.00 2.27
6216 7876 4.106341 TCAAGATCTGACCCTTTTCCCTTT 59.894 41.667 0.00 0.00 0.00 3.11
6217 7877 3.657727 TCAAGATCTGACCCTTTTCCCTT 59.342 43.478 0.00 0.00 0.00 3.95
6218 7878 3.260205 TCAAGATCTGACCCTTTTCCCT 58.740 45.455 0.00 0.00 0.00 4.20
6219 7879 3.721087 TCAAGATCTGACCCTTTTCCC 57.279 47.619 0.00 0.00 0.00 3.97
6220 7880 6.405278 TTTTTCAAGATCTGACCCTTTTCC 57.595 37.500 0.00 0.00 32.21 3.13
6263 7923 7.766278 GGGCGTTACATGATATCTATTCAAGAT 59.234 37.037 0.00 0.00 46.95 2.40
6264 7924 7.039011 AGGGCGTTACATGATATCTATTCAAGA 60.039 37.037 0.00 0.00 39.02 3.02
6265 7925 7.099764 AGGGCGTTACATGATATCTATTCAAG 58.900 38.462 0.00 0.00 0.00 3.02
6266 7926 7.004555 AGGGCGTTACATGATATCTATTCAA 57.995 36.000 0.00 0.00 0.00 2.69
6267 7927 6.605471 AGGGCGTTACATGATATCTATTCA 57.395 37.500 0.00 0.00 0.00 2.57
6268 7928 5.744345 CGAGGGCGTTACATGATATCTATTC 59.256 44.000 0.00 0.00 0.00 1.75
6269 7929 5.417894 TCGAGGGCGTTACATGATATCTATT 59.582 40.000 0.00 0.00 38.98 1.73
6270 7930 4.948004 TCGAGGGCGTTACATGATATCTAT 59.052 41.667 0.00 0.00 38.98 1.98
6271 7931 4.329392 TCGAGGGCGTTACATGATATCTA 58.671 43.478 0.00 0.00 38.98 1.98
6272 7932 3.154710 TCGAGGGCGTTACATGATATCT 58.845 45.455 0.00 0.00 38.98 1.98
6273 7933 3.570926 TCGAGGGCGTTACATGATATC 57.429 47.619 0.00 0.00 38.98 1.63
6274 7934 3.849911 CATCGAGGGCGTTACATGATAT 58.150 45.455 0.00 0.00 38.98 1.63
6275 7935 2.609491 GCATCGAGGGCGTTACATGATA 60.609 50.000 0.00 0.00 38.98 2.15
6276 7936 1.873903 GCATCGAGGGCGTTACATGAT 60.874 52.381 0.00 0.00 38.98 2.45
6277 7937 0.529773 GCATCGAGGGCGTTACATGA 60.530 55.000 0.00 0.00 38.98 3.07
6278 7938 1.934463 GCATCGAGGGCGTTACATG 59.066 57.895 0.00 0.00 38.98 3.21
6279 7939 4.438346 GCATCGAGGGCGTTACAT 57.562 55.556 0.00 0.00 38.98 2.29
6287 7947 1.066303 GAGATATAGCCGCATCGAGGG 59.934 57.143 0.00 0.00 0.00 4.30
6288 7948 1.066303 GGAGATATAGCCGCATCGAGG 59.934 57.143 0.00 0.00 0.00 4.63
6289 7949 2.020720 AGGAGATATAGCCGCATCGAG 58.979 52.381 0.00 0.00 0.00 4.04
6290 7950 2.130272 AGGAGATATAGCCGCATCGA 57.870 50.000 0.00 0.00 0.00 3.59
6291 7951 3.894920 CATAGGAGATATAGCCGCATCG 58.105 50.000 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.