Multiple sequence alignment - TraesCS7A01G239700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G239700 chr7A 100.000 9439 0 0 1 9439 214321930 214312492 0.000000e+00 17431.0
1 TraesCS7A01G239700 chr7D 94.559 4466 169 28 797 5214 201892059 201887620 0.000000e+00 6833.0
2 TraesCS7A01G239700 chr7D 96.359 1895 59 8 5227 7113 201887562 201885670 0.000000e+00 3109.0
3 TraesCS7A01G239700 chr7D 94.576 1770 55 19 7140 8906 201885460 201883729 0.000000e+00 2699.0
4 TraesCS7A01G239700 chr7D 89.844 768 45 15 28 784 201892788 201892043 0.000000e+00 955.0
5 TraesCS7A01G239700 chr7D 94.565 92 4 1 8985 9076 514661133 514661043 3.550000e-29 141.0
6 TraesCS7A01G239700 chr7D 94.253 87 3 2 8909 8993 201158027 201157941 2.140000e-26 132.0
7 TraesCS7A01G239700 chr7D 93.333 60 3 1 530 589 8735130 8735072 4.700000e-13 87.9
8 TraesCS7A01G239700 chr7D 100.000 32 0 0 7109 7140 201885646 201885615 1.020000e-04 60.2
9 TraesCS7A01G239700 chr7D 100.000 29 0 0 1 29 201892827 201892799 5.000000e-03 54.7
10 TraesCS7A01G239700 chr7B 94.912 2948 112 18 1736 4660 165308698 165305766 0.000000e+00 4578.0
11 TraesCS7A01G239700 chr7B 95.449 2461 88 13 4658 7113 165305651 165303210 0.000000e+00 3903.0
12 TraesCS7A01G239700 chr7B 94.689 1770 55 11 7140 8906 165303030 165301297 0.000000e+00 2712.0
13 TraesCS7A01G239700 chr7B 93.471 919 34 8 797 1701 165309596 165308690 0.000000e+00 1341.0
14 TraesCS7A01G239700 chr7B 92.458 769 42 9 28 784 165310344 165309580 0.000000e+00 1085.0
15 TraesCS7A01G239700 chr7B 84.646 495 40 13 4922 5388 742194964 742195450 2.400000e-125 460.0
16 TraesCS7A01G239700 chr7B 87.834 337 17 7 5025 5341 610528279 610527947 3.220000e-99 374.0
17 TraesCS7A01G239700 chr7B 93.778 225 13 1 9215 9439 165297441 165297218 4.220000e-88 337.0
18 TraesCS7A01G239700 chr3D 87.935 431 31 8 4922 5335 562667839 562668265 1.100000e-133 488.0
19 TraesCS7A01G239700 chr3D 90.811 185 15 2 590 774 67728835 67728653 7.320000e-61 246.0
20 TraesCS7A01G239700 chr3D 93.814 97 5 1 5326 5421 562670925 562671021 2.750000e-30 145.0
21 TraesCS7A01G239700 chr2B 89.222 334 13 8 5025 5341 756030062 756029735 6.870000e-106 396.0
22 TraesCS7A01G239700 chr2B 98.780 82 1 0 8995 9076 693434180 693434099 7.640000e-31 147.0
23 TraesCS7A01G239700 chr2B 88.136 118 8 6 8995 9107 245476485 245476369 1.650000e-27 135.0
24 TraesCS7A01G239700 chr6D 87.903 248 20 3 530 769 433766927 433766682 5.580000e-72 283.0
25 TraesCS7A01G239700 chr6B 87.500 248 19 4 530 769 656031910 656031667 9.340000e-70 276.0
26 TraesCS7A01G239700 chr6B 87.500 232 20 2 543 766 455134362 455134592 9.400000e-65 259.0
27 TraesCS7A01G239700 chr6B 95.604 91 4 0 8986 9076 77773308 77773398 7.640000e-31 147.0
28 TraesCS7A01G239700 chr6B 97.590 83 2 0 8994 9076 335100552 335100470 9.880000e-30 143.0
29 TraesCS7A01G239700 chr6A 87.097 248 23 2 530 769 579954025 579953779 1.210000e-68 272.0
30 TraesCS7A01G239700 chr3B 86.561 253 23 4 527 770 114096104 114096354 1.560000e-67 268.0
31 TraesCS7A01G239700 chr3B 85.169 236 27 3 539 766 354946101 354945866 1.580000e-57 235.0
32 TraesCS7A01G239700 chr2A 86.694 248 17 4 527 763 73540765 73541007 2.610000e-65 261.0
33 TraesCS7A01G239700 chr2A 94.624 93 4 1 8985 9076 589690411 589690503 9.880000e-30 143.0
34 TraesCS7A01G239700 chr2D 86.722 241 23 2 538 770 27826574 27826813 9.400000e-65 259.0
35 TraesCS7A01G239700 chr2D 93.651 63 3 1 527 589 74146765 74146826 1.010000e-14 93.5
36 TraesCS7A01G239700 chr1D 86.179 246 23 5 530 766 291080819 291080576 1.220000e-63 255.0
37 TraesCS7A01G239700 chr5B 87.440 207 18 4 535 733 406054204 406053998 2.050000e-56 231.0
38 TraesCS7A01G239700 chr3A 89.205 176 17 2 599 774 79454895 79454722 1.600000e-52 219.0
39 TraesCS7A01G239700 chr3A 93.878 98 6 0 8979 9076 488042648 488042551 2.120000e-31 148.0
40 TraesCS7A01G239700 chr4D 94.737 95 4 1 8983 9076 216743452 216743546 7.640000e-31 147.0
41 TraesCS7A01G239700 chr1B 95.604 91 2 2 8995 9083 258729886 258729976 2.750000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G239700 chr7A 214312492 214321930 9438 True 17431.00 17431 100.000000 1 9439 1 chr7A.!!$R1 9438
1 TraesCS7A01G239700 chr7D 201883729 201892827 9098 True 2285.15 6833 95.889667 1 8906 6 chr7D.!!$R4 8905
2 TraesCS7A01G239700 chr7B 165297218 165310344 13126 True 2326.00 4578 94.126167 28 9439 6 chr7B.!!$R2 9411
3 TraesCS7A01G239700 chr3D 562667839 562671021 3182 False 316.50 488 90.874500 4922 5421 2 chr3D.!!$F1 499


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 874 0.179189 GTTCTGTAGCAATGCACGGC 60.179 55.000 8.35 3.3 0.00 5.68 F
1199 1238 0.179129 AGTGTGCTTGTGTTTGCAGC 60.179 50.000 0.00 0.0 40.06 5.25 F
1231 1270 1.027357 CTGCAACTGTCAACCTTGCT 58.973 50.000 11.65 0.0 40.81 3.91 F
2663 2721 2.269940 ACTCTTGCTGTTGGGGACTAT 58.730 47.619 0.00 0.0 0.00 2.12 F
3832 3911 1.467342 GGAATACCACAGCAAACGGTC 59.533 52.381 0.00 0.0 34.12 4.79 F
3936 4015 2.223479 GCATAGGGCATTTGTTACACCG 60.223 50.000 0.00 0.0 43.97 4.94 F
5809 8753 2.030893 TCACTGCAAAACATAGCTGCAC 60.031 45.455 1.02 0.0 41.01 4.57 F
6236 9182 1.869767 CGTGGCTGAATCTCATTAGGC 59.130 52.381 0.00 0.0 36.39 3.93 F
7770 10928 1.611673 GGTGTTGGTGCAGCTAGTGAT 60.612 52.381 18.08 0.0 34.39 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2663 2721 0.546122 CCCCAGGCAGCACTAACATA 59.454 55.000 0.00 0.00 0.00 2.29 R
2666 2724 1.675641 CACCCCAGGCAGCACTAAC 60.676 63.158 0.00 0.00 0.00 2.34 R
2971 3049 2.357517 CGGTCCTGGACAGTGCAC 60.358 66.667 26.94 9.40 33.68 4.57 R
3863 3942 0.397564 TAAGACCCCGTTCCCAACAC 59.602 55.000 0.00 0.00 0.00 3.32 R
5809 8753 1.806496 TCAGGGTGTCCCATCCTATG 58.194 55.000 7.60 0.00 44.13 2.23 R
5898 8844 0.610174 CACTTCTGCTGCTGAGGGTA 59.390 55.000 19.69 1.80 0.00 3.69 R
7728 10886 0.887247 CACCCATTGCGATTCCAACA 59.113 50.000 0.00 0.00 0.00 3.33 R
7837 10999 0.473755 TGGCAATGGTGTCAGTGAGT 59.526 50.000 0.00 0.00 41.02 3.41 R
9172 15559 0.035152 ACATTGCATGCTCCCTCGAA 60.035 50.000 20.33 2.74 0.00 3.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 159 4.996434 GATGGAGGCGGCGATGGG 62.996 72.222 12.98 0.00 0.00 4.00
255 268 5.445964 GGGTATGTATGTCTTGGGAATTGT 58.554 41.667 0.00 0.00 0.00 2.71
261 274 6.862209 TGTATGTCTTGGGAATTGTAAATGC 58.138 36.000 0.00 0.00 0.00 3.56
266 279 6.491745 TGTCTTGGGAATTGTAAATGCTTACA 59.508 34.615 0.00 0.00 44.51 2.41
269 282 7.395772 TCTTGGGAATTGTAAATGCTTACATCA 59.604 33.333 0.00 0.00 45.29 3.07
286 299 3.706594 ACATCATATCTTCACGTCCCAGT 59.293 43.478 0.00 0.00 0.00 4.00
294 307 6.894339 ATCTTCACGTCCCAGTAAAATTTT 57.106 33.333 8.75 8.75 0.00 1.82
324 337 3.808466 TGGAATCACTGTAGCTGCTAG 57.192 47.619 10.13 3.54 0.00 3.42
328 352 4.142049 GGAATCACTGTAGCTGCTAGTCTT 60.142 45.833 10.13 3.47 0.00 3.01
341 365 5.317733 TGCTAGTCTTTACTTCTCTGCTC 57.682 43.478 0.00 0.00 37.15 4.26
361 385 1.888512 CTTCATTGGAGTTGGTGGTGG 59.111 52.381 0.00 0.00 0.00 4.61
362 386 0.850100 TCATTGGAGTTGGTGGTGGT 59.150 50.000 0.00 0.00 0.00 4.16
387 413 0.836400 TTCACTCCCTCACTCCACCC 60.836 60.000 0.00 0.00 0.00 4.61
390 416 1.992277 CTCCCTCACTCCACCCCAG 60.992 68.421 0.00 0.00 0.00 4.45
436 462 2.625790 CCACACCCCTCGATTTGAAAAA 59.374 45.455 0.00 0.00 0.00 1.94
437 463 3.258123 CCACACCCCTCGATTTGAAAAAT 59.742 43.478 0.00 0.00 0.00 1.82
438 464 4.461081 CCACACCCCTCGATTTGAAAAATA 59.539 41.667 0.00 0.00 0.00 1.40
532 558 2.972713 TGGGTTTCTTCTCTGCAGTACT 59.027 45.455 14.67 0.00 0.00 2.73
537 563 0.827368 CTTCTCTGCAGTACTCCCCC 59.173 60.000 14.67 0.00 0.00 5.40
557 583 2.949644 CCCCATTCCTAAAAGTAAGGCG 59.050 50.000 0.00 0.00 33.84 5.52
579 605 7.381139 AGGCGTATTTTGTTTTGTTAAGACATG 59.619 33.333 0.00 0.00 35.29 3.21
627 653 9.859427 AAGGTTATATGACATGAAATTTGTGTG 57.141 29.630 0.00 2.47 0.00 3.82
630 656 9.289303 GTTATATGACATGAAATTTGTGTGACC 57.711 33.333 0.00 0.00 0.00 4.02
641 667 7.866898 TGAAATTTGTGTGACCAGATTTGTATG 59.133 33.333 0.00 0.00 31.50 2.39
727 754 8.528044 TTGTTGGTAAAGGTCTTGTCTTAATT 57.472 30.769 0.00 0.00 0.00 1.40
756 783 2.684001 ACGCCTTATTCATCGGAACA 57.316 45.000 0.00 0.00 35.46 3.18
786 813 9.310716 GGAGTAGTACTAATCCAATACAACAAC 57.689 37.037 33.92 10.61 46.38 3.32
787 814 9.865321 GAGTAGTACTAATCCAATACAACAACA 57.135 33.333 17.59 0.00 0.00 3.33
790 817 8.911918 AGTACTAATCCAATACAACAACAACA 57.088 30.769 0.00 0.00 0.00 3.33
791 818 9.344772 AGTACTAATCCAATACAACAACAACAA 57.655 29.630 0.00 0.00 0.00 2.83
792 819 9.389570 GTACTAATCCAATACAACAACAACAAC 57.610 33.333 0.00 0.00 0.00 3.32
793 820 8.001881 ACTAATCCAATACAACAACAACAACA 57.998 30.769 0.00 0.00 0.00 3.33
794 821 8.470805 ACTAATCCAATACAACAACAACAACAA 58.529 29.630 0.00 0.00 0.00 2.83
795 822 7.532682 AATCCAATACAACAACAACAACAAC 57.467 32.000 0.00 0.00 0.00 3.32
796 823 6.274157 TCCAATACAACAACAACAACAACT 57.726 33.333 0.00 0.00 0.00 3.16
797 824 7.392494 TCCAATACAACAACAACAACAACTA 57.608 32.000 0.00 0.00 0.00 2.24
798 825 7.251994 TCCAATACAACAACAACAACAACTAC 58.748 34.615 0.00 0.00 0.00 2.73
799 826 7.121463 TCCAATACAACAACAACAACAACTACT 59.879 33.333 0.00 0.00 0.00 2.57
800 827 8.399425 CCAATACAACAACAACAACAACTACTA 58.601 33.333 0.00 0.00 0.00 1.82
801 828 9.776158 CAATACAACAACAACAACAACTACTAA 57.224 29.630 0.00 0.00 0.00 2.24
804 831 7.477494 ACAACAACAACAACAACTACTAATCC 58.523 34.615 0.00 0.00 0.00 3.01
847 874 0.179189 GTTCTGTAGCAATGCACGGC 60.179 55.000 8.35 3.30 0.00 5.68
911 947 3.953612 AGTTGCATGGTGAAACTTCTCAA 59.046 39.130 0.00 0.00 43.55 3.02
914 950 2.555757 GCATGGTGAAACTTCTCAAGCT 59.444 45.455 0.00 0.00 36.74 3.74
917 953 3.206150 TGGTGAAACTTCTCAAGCTGTC 58.794 45.455 0.00 0.00 36.74 3.51
918 954 3.206150 GGTGAAACTTCTCAAGCTGTCA 58.794 45.455 0.00 0.00 36.74 3.58
987 1026 4.601019 AGTCATTTGAGCGTTTGAACTTG 58.399 39.130 0.00 0.00 0.00 3.16
991 1030 3.398954 TTGAGCGTTTGAACTTGTGAC 57.601 42.857 0.00 0.00 0.00 3.67
1066 1105 5.245531 AGAATGAGGTGAGTTATTCGCAAA 58.754 37.500 0.00 0.00 38.08 3.68
1111 1150 2.435059 GAGGTGAGTTGCCTCGGC 60.435 66.667 0.00 0.00 42.46 5.54
1134 1173 0.541530 TCTCACTGGCTCAGAGCTGT 60.542 55.000 21.99 17.13 41.99 4.40
1158 1197 3.537580 TCCGGCATGGTGTTTATTAGTC 58.462 45.455 0.00 0.00 39.52 2.59
1159 1198 3.055021 TCCGGCATGGTGTTTATTAGTCA 60.055 43.478 0.00 0.00 39.52 3.41
1169 1208 6.872020 TGGTGTTTATTAGTCAACTAGCTGTC 59.128 38.462 0.00 0.00 0.00 3.51
1173 1212 9.204570 TGTTTATTAGTCAACTAGCTGTCTTTC 57.795 33.333 0.00 0.00 0.00 2.62
1199 1238 0.179129 AGTGTGCTTGTGTTTGCAGC 60.179 50.000 0.00 0.00 40.06 5.25
1213 1252 3.252284 CAGCCCCAGGTGGTGTCT 61.252 66.667 0.00 0.00 37.86 3.41
1231 1270 1.027357 CTGCAACTGTCAACCTTGCT 58.973 50.000 11.65 0.00 40.81 3.91
1373 1412 7.064253 AGCGAGGTAAACTGTTACAATTGATAC 59.936 37.037 13.59 9.82 41.31 2.24
1388 1427 6.535150 ACAATTGATACTGTAATGTCGTGAGG 59.465 38.462 13.59 0.00 0.00 3.86
1550 1589 7.889589 GCTTAAGCATTTCAGTGGTTTTTAT 57.110 32.000 22.59 0.00 40.08 1.40
1620 1660 8.371699 GTTTAGCTGGATATATCTCAAAGTCCT 58.628 37.037 12.42 3.05 0.00 3.85
1681 1721 7.801547 AATTGCTTTGTCATTCACTTTATCG 57.198 32.000 0.00 0.00 0.00 2.92
1710 1750 4.706962 GCCCTCCAGTTTATGTCTGAATTT 59.293 41.667 0.00 0.00 35.20 1.82
1732 1772 6.790232 TTCCCTCTAAATTTTAATGCCAGG 57.210 37.500 0.00 0.00 0.00 4.45
1875 1915 5.061684 GGTAAACTTAATTCGCATTGGCAAC 59.938 40.000 0.00 0.00 41.24 4.17
1894 1934 5.594317 GGCAACTAAACATCAACCCTATGAT 59.406 40.000 0.00 0.00 40.64 2.45
1932 1990 9.671279 TTTGAGTCTTTTCTATGATTAGCATGA 57.329 29.630 0.00 0.00 37.87 3.07
2037 2095 4.220382 TCTTTGGAGTTAATGCACCATTGG 59.780 41.667 0.00 0.00 35.54 3.16
2115 2173 2.433239 GGGCCTGGACGAAGACTAATTA 59.567 50.000 0.84 0.00 0.00 1.40
2124 2182 7.561251 TGGACGAAGACTAATTATTGATGGAA 58.439 34.615 0.00 0.00 0.00 3.53
2301 2359 4.024218 GCATGAGCTCAGATACATCAAACC 60.024 45.833 22.96 0.00 37.91 3.27
2303 2361 5.363562 TGAGCTCAGATACATCAAACCAT 57.636 39.130 13.74 0.00 0.00 3.55
2305 2363 6.519382 TGAGCTCAGATACATCAAACCATAG 58.481 40.000 13.74 0.00 0.00 2.23
2343 2401 3.507233 CCTTACCACAACTGCATCATTGT 59.493 43.478 5.54 5.54 39.63 2.71
2609 2667 4.081406 GCCTAATGGTGGATAATGATGCA 58.919 43.478 0.00 0.00 35.27 3.96
2663 2721 2.269940 ACTCTTGCTGTTGGGGACTAT 58.730 47.619 0.00 0.00 0.00 2.12
2666 2724 4.141620 ACTCTTGCTGTTGGGGACTATATG 60.142 45.833 0.00 0.00 0.00 1.78
2716 2774 3.822594 GTCACACAGACAAACACACAA 57.177 42.857 0.00 0.00 46.77 3.33
2724 2782 9.295214 CACACAGACAAACACACAAATTAATAA 57.705 29.630 0.00 0.00 0.00 1.40
2813 2872 4.333913 TTGGCATGTTATTTGCTTGTGT 57.666 36.364 0.00 0.00 40.03 3.72
2832 2910 9.840427 GCTTGTGTGTTAATGAGTAAACATAAT 57.160 29.630 0.00 0.00 37.87 1.28
2859 2937 7.962441 ACATATACAGGTACAAGTGCATGATA 58.038 34.615 9.76 4.43 31.65 2.15
2868 2946 7.445402 AGGTACAAGTGCATGATATTATGTTCC 59.555 37.037 9.05 1.01 0.00 3.62
2900 2978 6.151144 AGGTCCACATAGAACTTTGTTTATGC 59.849 38.462 0.00 0.00 25.41 3.14
3413 3491 3.128415 GGGACCAACTCTACGAGAACTAC 59.872 52.174 0.00 0.00 33.32 2.73
3414 3492 4.009002 GGACCAACTCTACGAGAACTACT 58.991 47.826 0.00 0.00 33.32 2.57
3415 3493 5.181748 GGACCAACTCTACGAGAACTACTA 58.818 45.833 0.00 0.00 33.32 1.82
3526 3605 2.226200 TGTGGATGCGATGTTCAGTTTG 59.774 45.455 0.00 0.00 0.00 2.93
3528 3607 1.468054 GGATGCGATGTTCAGTTTGGC 60.468 52.381 0.00 0.00 0.00 4.52
3543 3622 3.712881 GGCGCACGAGTTCCACAC 61.713 66.667 10.83 0.00 0.00 3.82
3573 3652 9.185680 GACCCTTTGTGTGGACTAAATAATTAT 57.814 33.333 0.00 0.00 0.00 1.28
3601 3680 3.674997 TGGGTCATTGACTACTTTCTGC 58.325 45.455 16.02 0.00 32.47 4.26
3705 3784 6.831769 AGCACTTAGACATATGTTCAAAACG 58.168 36.000 10.30 0.00 0.00 3.60
3782 3861 6.931281 TCCTGATCACTCGAAATATTGATTCC 59.069 38.462 0.00 0.00 0.00 3.01
3832 3911 1.467342 GGAATACCACAGCAAACGGTC 59.533 52.381 0.00 0.00 34.12 4.79
3863 3942 2.514803 AGGAACCTTGATTTTGTCCCG 58.485 47.619 0.00 0.00 0.00 5.14
3936 4015 2.223479 GCATAGGGCATTTGTTACACCG 60.223 50.000 0.00 0.00 43.97 4.94
4262 4342 2.571202 TGCAGTGTTCTGGTATGATCCA 59.429 45.455 0.00 0.00 41.57 3.41
4265 4345 4.623886 GCAGTGTTCTGGTATGATCCAAGA 60.624 45.833 0.00 0.00 41.57 3.02
4269 4349 5.705441 GTGTTCTGGTATGATCCAAGAAACA 59.295 40.000 0.00 0.00 37.01 2.83
4468 4548 3.499157 CCATGTTTGTTTGAAATGCAGGG 59.501 43.478 0.00 0.00 0.00 4.45
4470 4550 4.686191 TGTTTGTTTGAAATGCAGGGAT 57.314 36.364 0.00 0.00 0.00 3.85
4499 4581 8.352201 TGAAAGTGTAGGTTCATTTCAAGATTG 58.648 33.333 0.00 0.00 37.04 2.67
4505 4588 8.912988 TGTAGGTTCATTTCAAGATTGAACTTT 58.087 29.630 18.06 12.69 45.99 2.66
4506 4589 9.750125 GTAGGTTCATTTCAAGATTGAACTTTT 57.250 29.630 18.06 11.21 45.99 2.27
4578 4662 9.289782 GATTAATCATGCTTTTAGTCCCATACT 57.710 33.333 10.68 0.00 42.62 2.12
4580 4664 6.949352 ATCATGCTTTTAGTCCCATACTTG 57.051 37.500 0.00 0.00 39.80 3.16
4587 4671 7.715249 TGCTTTTAGTCCCATACTTGTATCATC 59.285 37.037 0.00 0.00 39.80 2.92
4646 4730 5.896678 AGCTGTCAGAAATCTATGTACCTCT 59.103 40.000 3.32 0.00 0.00 3.69
4665 4866 9.509956 GTACCTCTCATATGTCTATACAACTCT 57.490 37.037 1.90 0.00 39.58 3.24
4742 4943 8.429237 AACCTTGAAATATATTGTTTGGTCCA 57.571 30.769 0.00 0.00 0.00 4.02
4945 5149 4.513692 TGTGAAACATTTCGAAGGTGTAGG 59.486 41.667 15.72 0.00 45.67 3.18
4958 5162 5.753921 CGAAGGTGTAGGGAATGAATAACTC 59.246 44.000 0.00 0.00 0.00 3.01
4988 5193 4.184079 AGGAGCTGAAAATTTGCATCAC 57.816 40.909 0.00 0.00 0.00 3.06
5011 5216 9.498176 TCACAGAATATGATCATTTGTATCCTG 57.502 33.333 14.65 7.17 0.00 3.86
5106 5311 5.594926 CTGAAAATTTGCAGGTTCTCACTT 58.405 37.500 17.39 0.00 0.00 3.16
5274 5534 3.885297 CCAAATACCATAGTTCAGGGCTG 59.115 47.826 0.00 0.00 0.00 4.85
5341 8285 5.179555 GTGCCCTACTTTCTGAACAGTTAAG 59.820 44.000 9.41 13.33 0.00 1.85
5342 8286 4.695928 GCCCTACTTTCTGAACAGTTAAGG 59.304 45.833 16.63 10.30 0.00 2.69
5360 8304 7.554118 CAGTTAAGGGTATTGATCTTCATGTGT 59.446 37.037 0.00 0.00 0.00 3.72
5455 8399 2.673893 GCCCCTTTTGCCTGAATAAACG 60.674 50.000 0.00 0.00 0.00 3.60
5583 8527 4.877378 AGTTGATGCCATTGTGTTTGAT 57.123 36.364 0.00 0.00 0.00 2.57
5677 8621 9.659830 GTGTAAATACAAAGTTAAGTGGTTCTG 57.340 33.333 0.00 0.00 38.04 3.02
5781 8725 7.861872 TGCGTTACTTTTTACTTCCCATTTAAC 59.138 33.333 0.00 0.00 0.00 2.01
5784 8728 9.687210 GTTACTTTTTACTTCCCATTTAACTGG 57.313 33.333 4.87 4.87 35.95 4.00
5809 8753 2.030893 TCACTGCAAAACATAGCTGCAC 60.031 45.455 1.02 0.00 41.01 4.57
5841 8785 4.021544 GGACACCCTGAAATTTGCAATGTA 60.022 41.667 0.00 0.00 0.00 2.29
5845 8789 6.650390 ACACCCTGAAATTTGCAATGTATTTC 59.350 34.615 20.72 20.72 38.27 2.17
5898 8844 4.388485 TGTGTGACTTATGCACTTCATGT 58.612 39.130 0.00 0.00 37.18 3.21
6024 8970 2.903784 TCTTAGTTTGGCTGCTGGAGTA 59.096 45.455 0.00 0.00 0.00 2.59
6042 8988 7.067494 GCTGGAGTAGAATCAAATACAAACCAT 59.933 37.037 0.00 0.00 0.00 3.55
6111 9057 5.675684 TCAATATGAAGGTACTCACAGCA 57.324 39.130 0.00 0.00 38.49 4.41
6172 9118 2.937873 GCCAATTGCCTCGGTACACTAA 60.938 50.000 0.00 0.00 0.00 2.24
6175 9121 4.379082 CCAATTGCCTCGGTACACTAAAAC 60.379 45.833 0.00 0.00 0.00 2.43
6204 9150 6.210784 TGTTGTAGGATAACTGTTCTGCTACT 59.789 38.462 26.05 9.46 0.00 2.57
6217 9163 3.849911 TCTGCTACTTGAATTCAGACCG 58.150 45.455 8.41 1.90 0.00 4.79
6236 9182 1.869767 CGTGGCTGAATCTCATTAGGC 59.130 52.381 0.00 0.00 36.39 3.93
6323 9269 8.969260 ACTTGATAATTGACATATTCTGCTCA 57.031 30.769 0.00 0.00 0.00 4.26
6427 9373 7.584123 GCAGATTTTACTGTGTTTATATGCTCG 59.416 37.037 0.00 0.00 39.73 5.03
6446 9392 4.142600 GCTCGCCATTTTCCCATGTATATC 60.143 45.833 0.00 0.00 0.00 1.63
6535 9481 2.943036 ACAGGTTTCGGTTGGTACAT 57.057 45.000 0.00 0.00 39.30 2.29
6625 9571 8.757877 GGACATATATCTTTCCTCATTCTAGCT 58.242 37.037 0.00 0.00 0.00 3.32
6698 9644 6.855836 AGCTCCATGTGTAATTGTTATGTTG 58.144 36.000 0.00 0.00 0.00 3.33
6775 9721 2.356382 GTGTTGTTCGTGACCCATTTCA 59.644 45.455 0.00 0.00 0.00 2.69
6821 9767 5.295292 GTCTGTTGCATATGTAGCAGTTGAT 59.705 40.000 27.82 0.00 43.75 2.57
6848 9794 7.278203 GGTACTCTAGCTGGTCTTATTTGTTTC 59.722 40.741 0.00 0.00 0.00 2.78
7027 9973 3.438781 TGCTTTACCGATGTGGACATTTC 59.561 43.478 0.00 0.00 42.00 2.17
7072 10021 9.916397 CTGTAGTAAAACAACAAACTTCTGTAG 57.084 33.333 0.00 0.00 0.00 2.74
7160 10316 4.473477 AGTACATCTTAGAAGGTGCACC 57.527 45.455 29.22 29.22 40.85 5.01
7222 10378 7.780064 TGCTGCATAAATTTTCTGCCTATTAA 58.220 30.769 17.71 3.28 35.02 1.40
7273 10429 6.854381 GGTAAATACCACTGTTCAACTTTTCG 59.146 38.462 4.72 0.00 45.73 3.46
7351 10507 7.953005 TGTAGGAAATGGATTCATGCTTTTA 57.047 32.000 0.00 0.00 39.98 1.52
7571 10729 8.410141 TGTTTATCCTTTGTTACCTTTTCAGTG 58.590 33.333 0.00 0.00 0.00 3.66
7770 10928 1.611673 GGTGTTGGTGCAGCTAGTGAT 60.612 52.381 18.08 0.00 34.39 3.06
7824 10982 6.202954 GGTTATCTCAGGTAATTCATTCACGG 59.797 42.308 0.00 0.00 0.00 4.94
7837 10999 0.394938 TTCACGGCAGCTTGGAGTTA 59.605 50.000 0.00 0.00 0.00 2.24
7838 11000 0.320421 TCACGGCAGCTTGGAGTTAC 60.320 55.000 0.00 0.00 0.00 2.50
7839 11001 0.320771 CACGGCAGCTTGGAGTTACT 60.321 55.000 0.00 0.00 0.00 2.24
7840 11002 0.037232 ACGGCAGCTTGGAGTTACTC 60.037 55.000 3.36 3.36 0.00 2.59
7841 11003 0.037326 CGGCAGCTTGGAGTTACTCA 60.037 55.000 14.72 0.00 31.08 3.41
8252 11414 1.679641 TACGATGCTGACCCCGTCA 60.680 57.895 0.00 0.00 40.50 4.35
8487 11649 9.661563 ACTTATTACTCCACGAACATTTGATTA 57.338 29.630 0.00 0.00 0.00 1.75
8491 11653 6.604735 ACTCCACGAACATTTGATTATAGC 57.395 37.500 0.00 0.00 0.00 2.97
8525 11687 4.131596 GCCACAGGTGAGTAAAAACACTA 58.868 43.478 0.00 0.00 37.22 2.74
8528 11690 6.428771 GCCACAGGTGAGTAAAAACACTAATA 59.571 38.462 0.00 0.00 37.22 0.98
8534 11696 9.052759 AGGTGAGTAAAAACACTAATAACACTG 57.947 33.333 0.00 0.00 37.22 3.66
8535 11697 8.833493 GGTGAGTAAAAACACTAATAACACTGT 58.167 33.333 0.00 0.00 37.22 3.55
8542 11704 6.796705 AACACTAATAACACTGTAAGCACC 57.203 37.500 0.00 0.00 37.60 5.01
8543 11705 5.860611 ACACTAATAACACTGTAAGCACCA 58.139 37.500 0.00 0.00 37.60 4.17
8544 11706 6.292923 ACACTAATAACACTGTAAGCACCAA 58.707 36.000 0.00 0.00 37.60 3.67
8545 11707 6.426937 ACACTAATAACACTGTAAGCACCAAG 59.573 38.462 0.00 0.00 37.60 3.61
8546 11708 6.649141 CACTAATAACACTGTAAGCACCAAGA 59.351 38.462 0.00 0.00 37.60 3.02
8547 11709 6.874134 ACTAATAACACTGTAAGCACCAAGAG 59.126 38.462 0.00 0.00 37.60 2.85
8548 11710 3.560636 AACACTGTAAGCACCAAGAGT 57.439 42.857 0.00 0.00 37.60 3.24
8549 11711 3.560636 ACACTGTAAGCACCAAGAGTT 57.439 42.857 0.00 0.00 37.60 3.01
8550 11712 3.206150 ACACTGTAAGCACCAAGAGTTG 58.794 45.455 0.00 0.00 37.60 3.16
8551 11713 3.118408 ACACTGTAAGCACCAAGAGTTGA 60.118 43.478 0.00 0.00 37.60 3.18
8552 11714 4.067896 CACTGTAAGCACCAAGAGTTGAT 58.932 43.478 0.00 0.00 37.60 2.57
8553 11715 4.067896 ACTGTAAGCACCAAGAGTTGATG 58.932 43.478 0.00 0.00 37.60 3.07
8554 11716 2.813754 TGTAAGCACCAAGAGTTGATGC 59.186 45.455 0.00 0.00 36.52 3.91
8555 11717 1.985473 AAGCACCAAGAGTTGATGCA 58.015 45.000 8.67 0.00 38.79 3.96
8573 11735 3.930336 TGCAGTAATCACCAAGAGTCTG 58.070 45.455 0.00 0.00 0.00 3.51
8582 11744 9.167311 GTAATCACCAAGAGTCTGAAACATTAT 57.833 33.333 0.00 0.00 0.00 1.28
8591 11753 8.709386 AGAGTCTGAAACATTATGTGATGTAC 57.291 34.615 0.00 0.00 39.25 2.90
8599 11761 8.635765 AAACATTATGTGATGTACAAGTCCTT 57.364 30.769 0.00 0.00 43.77 3.36
8609 11771 2.348411 ACAAGTCCTTGAACCAGTGG 57.652 50.000 7.91 7.91 42.93 4.00
8690 11853 1.535028 GTGCGTGGATGAACATCACAA 59.465 47.619 15.22 0.00 39.54 3.33
8699 11862 3.144657 TGAACATCACAAGCTCACCAT 57.855 42.857 0.00 0.00 0.00 3.55
8706 11869 5.298527 ACATCACAAGCTCACCATGATATTG 59.701 40.000 0.00 0.00 31.77 1.90
8735 11898 9.528018 CAAAATTACAATACAAAGTTCACTGGT 57.472 29.630 0.00 0.00 0.00 4.00
8775 11938 9.598517 AGTAATATTGTGCCCAATTTAATTGTG 57.401 29.630 15.40 6.38 41.50 3.33
8840 12003 9.840427 AAAATTAGACATGTTGTAGGAAAATCG 57.160 29.630 0.00 0.00 0.00 3.34
8855 12018 9.984190 GTAGGAAAATCGAATTCTATTCTACCT 57.016 33.333 19.06 19.06 0.00 3.08
8883 12046 5.221106 CCACCTAGTCATACATGGCAAATTG 60.221 44.000 0.00 0.00 34.11 2.32
8890 12053 1.909700 ACATGGCAAATTGTCGAGGT 58.090 45.000 0.00 0.00 0.00 3.85
8931 12791 7.649370 AGATCATATGTGCTTAGAAATGTCG 57.351 36.000 1.90 0.00 0.00 4.35
8932 12792 7.436933 AGATCATATGTGCTTAGAAATGTCGA 58.563 34.615 1.90 0.00 0.00 4.20
8933 12793 8.093307 AGATCATATGTGCTTAGAAATGTCGAT 58.907 33.333 1.90 0.00 0.00 3.59
8934 12794 8.613060 ATCATATGTGCTTAGAAATGTCGATT 57.387 30.769 1.90 0.00 0.00 3.34
8935 12795 9.710900 ATCATATGTGCTTAGAAATGTCGATTA 57.289 29.630 1.90 0.00 0.00 1.75
8936 12796 9.710900 TCATATGTGCTTAGAAATGTCGATTAT 57.289 29.630 1.90 0.00 0.00 1.28
8955 12815 8.210946 TCGATTATTAATCACTTGAGGTGGAAT 58.789 33.333 15.00 0.00 45.38 3.01
8956 12816 8.840321 CGATTATTAATCACTTGAGGTGGAATT 58.160 33.333 15.00 0.00 45.38 2.17
8991 12851 9.738832 CCTTTTTAATCGACAAAGGTTTTAAGA 57.261 29.630 14.78 0.00 41.16 2.10
8997 12857 8.617290 AATCGACAAAGGTTTTAAGACATACT 57.383 30.769 0.00 0.00 0.00 2.12
8998 12858 7.647907 TCGACAAAGGTTTTAAGACATACTC 57.352 36.000 0.00 0.00 0.00 2.59
8999 12859 6.647895 TCGACAAAGGTTTTAAGACATACTCC 59.352 38.462 0.00 0.00 0.00 3.85
9000 12860 6.128363 CGACAAAGGTTTTAAGACATACTCCC 60.128 42.308 0.00 0.00 0.00 4.30
9001 12861 6.849151 ACAAAGGTTTTAAGACATACTCCCT 58.151 36.000 0.00 0.00 0.00 4.20
9002 12862 6.940867 ACAAAGGTTTTAAGACATACTCCCTC 59.059 38.462 0.00 0.00 0.00 4.30
9003 12863 5.695424 AGGTTTTAAGACATACTCCCTCC 57.305 43.478 0.00 0.00 0.00 4.30
9004 12864 4.161754 AGGTTTTAAGACATACTCCCTCCG 59.838 45.833 0.00 0.00 0.00 4.63
9005 12865 4.081254 GGTTTTAAGACATACTCCCTCCGT 60.081 45.833 0.00 0.00 0.00 4.69
9006 12866 5.485620 GTTTTAAGACATACTCCCTCCGTT 58.514 41.667 0.00 0.00 0.00 4.44
9007 12867 4.996788 TTAAGACATACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
9008 12868 2.830651 AGACATACTCCCTCCGTTCT 57.169 50.000 0.00 0.00 0.00 3.01
9009 12869 3.947612 AGACATACTCCCTCCGTTCTA 57.052 47.619 0.00 0.00 0.00 2.10
9010 12870 4.246712 AGACATACTCCCTCCGTTCTAA 57.753 45.455 0.00 0.00 0.00 2.10
9011 12871 4.607239 AGACATACTCCCTCCGTTCTAAA 58.393 43.478 0.00 0.00 0.00 1.85
9012 12872 5.021458 AGACATACTCCCTCCGTTCTAAAA 58.979 41.667 0.00 0.00 0.00 1.52
9013 12873 5.661759 AGACATACTCCCTCCGTTCTAAAAT 59.338 40.000 0.00 0.00 0.00 1.82
9014 12874 6.837568 AGACATACTCCCTCCGTTCTAAAATA 59.162 38.462 0.00 0.00 0.00 1.40
9015 12875 7.014422 AGACATACTCCCTCCGTTCTAAAATAG 59.986 40.741 0.00 0.00 0.00 1.73
9016 12876 6.837568 ACATACTCCCTCCGTTCTAAAATAGA 59.162 38.462 0.00 0.00 0.00 1.98
9017 12877 7.509659 ACATACTCCCTCCGTTCTAAAATAGAT 59.490 37.037 0.00 0.00 34.22 1.98
9018 12878 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
9019 12879 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
9020 12880 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
9021 12881 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
9022 12882 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
9023 12883 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
9024 12884 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
9025 12885 7.222999 CCTCCGTTCTAAAATAGATGACTCAAC 59.777 40.741 0.00 0.00 34.22 3.18
9026 12886 7.837863 TCCGTTCTAAAATAGATGACTCAACT 58.162 34.615 0.00 0.00 34.22 3.16
9027 12887 8.311836 TCCGTTCTAAAATAGATGACTCAACTT 58.688 33.333 0.00 0.00 34.22 2.66
9028 12888 8.936864 CCGTTCTAAAATAGATGACTCAACTTT 58.063 33.333 0.00 0.00 34.22 2.66
9029 12889 9.746711 CGTTCTAAAATAGATGACTCAACTTTG 57.253 33.333 0.00 0.00 34.22 2.77
9070 12930 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
9071 12931 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
9072 12932 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
9073 12933 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
9074 12934 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
9075 12935 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
9076 12936 3.118038 TCATCTATTTTGGAACGGAGGGG 60.118 47.826 0.00 0.00 0.00 4.79
9077 12937 2.553464 TCTATTTTGGAACGGAGGGGA 58.447 47.619 0.00 0.00 0.00 4.81
9078 12938 3.120108 TCTATTTTGGAACGGAGGGGAT 58.880 45.455 0.00 0.00 0.00 3.85
9079 12939 2.437085 ATTTTGGAACGGAGGGGATC 57.563 50.000 0.00 0.00 0.00 3.36
9080 12940 1.368374 TTTTGGAACGGAGGGGATCT 58.632 50.000 0.00 0.00 0.00 2.75
9081 12941 2.257391 TTTGGAACGGAGGGGATCTA 57.743 50.000 0.00 0.00 0.00 1.98
9082 12942 1.789523 TTGGAACGGAGGGGATCTAG 58.210 55.000 0.00 0.00 0.00 2.43
9083 12943 0.931468 TGGAACGGAGGGGATCTAGA 59.069 55.000 0.00 0.00 0.00 2.43
9084 12944 1.289830 TGGAACGGAGGGGATCTAGAA 59.710 52.381 0.00 0.00 0.00 2.10
9090 12950 2.560542 CGGAGGGGATCTAGAATCAGTG 59.439 54.545 0.00 0.00 0.00 3.66
9093 12953 4.479158 GAGGGGATCTAGAATCAGTGAGT 58.521 47.826 0.00 0.00 0.00 3.41
9096 12956 5.836358 AGGGGATCTAGAATCAGTGAGTTAC 59.164 44.000 0.00 0.00 0.00 2.50
9104 12964 9.698309 TCTAGAATCAGTGAGTTACTTTTGAAG 57.302 33.333 0.00 0.00 37.60 3.02
9111 12971 8.612619 TCAGTGAGTTACTTTTGAAGAATGTTC 58.387 33.333 0.00 0.00 37.60 3.18
9166 15553 4.041917 CTTGCACGGCGGCATGTT 62.042 61.111 20.53 0.00 44.48 2.71
9167 15554 4.340019 TTGCACGGCGGCATGTTG 62.340 61.111 20.53 6.25 44.48 3.33
9177 15564 4.422506 GCATGTTGCACGTTCGAG 57.577 55.556 0.00 0.00 44.26 4.04
9178 15565 1.154413 GCATGTTGCACGTTCGAGG 60.154 57.895 0.00 0.00 44.26 4.63
9179 15566 1.497278 CATGTTGCACGTTCGAGGG 59.503 57.895 0.00 0.00 0.00 4.30
9180 15567 0.948623 CATGTTGCACGTTCGAGGGA 60.949 55.000 0.00 0.00 0.00 4.20
9181 15568 0.670546 ATGTTGCACGTTCGAGGGAG 60.671 55.000 0.00 0.00 0.00 4.30
9182 15569 2.357034 TTGCACGTTCGAGGGAGC 60.357 61.111 0.00 1.32 0.00 4.70
9183 15570 3.158537 TTGCACGTTCGAGGGAGCA 62.159 57.895 5.95 5.95 0.00 4.26
9184 15571 2.125512 GCACGTTCGAGGGAGCAT 60.126 61.111 0.00 0.00 0.00 3.79
9185 15572 2.456119 GCACGTTCGAGGGAGCATG 61.456 63.158 0.00 0.00 0.00 4.06
9186 15573 2.125512 ACGTTCGAGGGAGCATGC 60.126 61.111 10.51 10.51 0.00 4.06
9188 15575 1.741401 CGTTCGAGGGAGCATGCAA 60.741 57.895 21.98 0.00 0.00 4.08
9189 15576 1.091771 CGTTCGAGGGAGCATGCAAT 61.092 55.000 21.98 0.00 0.00 3.56
9201 15588 2.203800 CATGCAATGTGCTTAGCAGG 57.796 50.000 7.34 0.00 45.31 4.85
9202 15589 1.746787 CATGCAATGTGCTTAGCAGGA 59.253 47.619 7.34 0.00 45.31 3.86
9203 15590 2.133281 TGCAATGTGCTTAGCAGGAT 57.867 45.000 7.34 0.00 45.31 3.24
9204 15591 3.280197 TGCAATGTGCTTAGCAGGATA 57.720 42.857 7.34 0.00 45.31 2.59
9205 15592 3.619419 TGCAATGTGCTTAGCAGGATAA 58.381 40.909 7.34 0.00 45.31 1.75
9206 15593 4.015764 TGCAATGTGCTTAGCAGGATAAA 58.984 39.130 7.34 0.00 45.31 1.40
9207 15594 4.096833 TGCAATGTGCTTAGCAGGATAAAG 59.903 41.667 7.34 0.00 45.31 1.85
9209 15596 5.163622 GCAATGTGCTTAGCAGGATAAAGAA 60.164 40.000 7.34 0.00 40.08 2.52
9210 15597 6.493116 CAATGTGCTTAGCAGGATAAAGAAG 58.507 40.000 7.34 0.00 40.08 2.85
9213 15600 4.588899 TGCTTAGCAGGATAAAGAAGCAA 58.411 39.130 1.39 0.00 44.49 3.91
9228 16040 3.056607 AGAAGCAATTTTATTGCCACGCT 60.057 39.130 17.97 9.38 45.98 5.07
9234 16046 5.347342 CAATTTTATTGCCACGCTGGATAA 58.653 37.500 8.04 3.36 40.96 1.75
9281 16093 2.350899 TGCTTGATTTGGCAACGATG 57.649 45.000 0.00 0.00 42.51 3.84
9394 16206 2.947652 GTGCTCACTGATGTGGCAATAT 59.052 45.455 11.62 0.00 45.04 1.28
9406 16218 7.289310 TGATGTGGCAATATTCCATCTTCTTA 58.711 34.615 12.79 0.00 35.81 2.10
9408 16220 7.572523 TGTGGCAATATTCCATCTTCTTAAG 57.427 36.000 9.07 0.00 35.81 1.85
9409 16221 6.039717 TGTGGCAATATTCCATCTTCTTAAGC 59.960 38.462 9.07 0.00 35.81 3.09
9412 16224 6.138761 GCAATATTCCATCTTCTTAAGCACG 58.861 40.000 0.00 0.00 0.00 5.34
9426 16238 0.462047 AGCACGCCTACATAAGCACC 60.462 55.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 268 8.887036 ACGTGAAGATATGATGTAAGCATTTA 57.113 30.769 0.00 0.00 42.55 1.40
261 274 5.842907 TGGGACGTGAAGATATGATGTAAG 58.157 41.667 0.00 0.00 0.00 2.34
266 279 6.479972 TTTACTGGGACGTGAAGATATGAT 57.520 37.500 0.00 0.00 0.00 2.45
269 282 8.575649 AAAATTTTACTGGGACGTGAAGATAT 57.424 30.769 0.37 0.00 0.00 1.63
275 288 3.822167 GGGAAAATTTTACTGGGACGTGA 59.178 43.478 12.85 0.00 0.00 4.35
286 299 8.977412 GTGATTCCATCTAAGGGGAAAATTTTA 58.023 33.333 2.75 0.00 45.63 1.52
294 307 3.736094 ACAGTGATTCCATCTAAGGGGA 58.264 45.455 0.00 0.00 0.00 4.81
324 337 6.091986 CCAATGAAGAGCAGAGAAGTAAAGAC 59.908 42.308 0.00 0.00 0.00 3.01
328 352 5.247110 ACTCCAATGAAGAGCAGAGAAGTAA 59.753 40.000 0.00 0.00 34.56 2.24
341 365 1.888512 CCACCACCAACTCCAATGAAG 59.111 52.381 0.00 0.00 0.00 3.02
387 413 4.478203 TCTAGATGAATGAGGGAGACTGG 58.522 47.826 0.00 0.00 0.00 4.00
390 416 6.478512 AAGTTCTAGATGAATGAGGGAGAC 57.521 41.667 0.00 0.00 36.99 3.36
477 503 2.325082 CCACACCTGCGTAACTGCC 61.325 63.158 0.00 0.00 0.00 4.85
537 563 3.617284 ACGCCTTACTTTTAGGAATGGG 58.383 45.455 0.00 0.00 34.56 4.00
579 605 6.461509 CCTTGTATTTATGGAGGGTCAAATGC 60.462 42.308 0.00 0.00 0.00 3.56
710 737 9.117183 ACTTCGTTTAATTAAGACAAGACCTTT 57.883 29.630 14.39 0.00 0.00 3.11
713 740 8.158445 CGTACTTCGTTTAATTAAGACAAGACC 58.842 37.037 14.39 7.06 34.52 3.85
727 754 5.456497 CGATGAATAAGGCGTACTTCGTTTA 59.544 40.000 0.00 0.00 40.64 2.01
735 762 3.450578 TGTTCCGATGAATAAGGCGTAC 58.549 45.455 0.00 0.00 31.98 3.67
756 783 7.823635 TGTATTGGATTAGTACTACTCCCTCT 58.176 38.462 27.60 17.80 34.92 3.69
778 805 8.614346 GGATTAGTAGTTGTTGTTGTTGTTGTA 58.386 33.333 0.00 0.00 0.00 2.41
779 806 7.121463 TGGATTAGTAGTTGTTGTTGTTGTTGT 59.879 33.333 0.00 0.00 0.00 3.32
780 807 7.476667 TGGATTAGTAGTTGTTGTTGTTGTTG 58.523 34.615 0.00 0.00 0.00 3.33
781 808 7.633193 TGGATTAGTAGTTGTTGTTGTTGTT 57.367 32.000 0.00 0.00 0.00 2.83
782 809 7.633193 TTGGATTAGTAGTTGTTGTTGTTGT 57.367 32.000 0.00 0.00 0.00 3.32
783 810 9.607285 GTATTGGATTAGTAGTTGTTGTTGTTG 57.393 33.333 0.00 0.00 0.00 3.33
784 811 8.500773 CGTATTGGATTAGTAGTTGTTGTTGTT 58.499 33.333 0.00 0.00 0.00 2.83
785 812 7.874016 TCGTATTGGATTAGTAGTTGTTGTTGT 59.126 33.333 0.00 0.00 0.00 3.32
786 813 8.166706 GTCGTATTGGATTAGTAGTTGTTGTTG 58.833 37.037 0.00 0.00 0.00 3.33
787 814 8.092687 AGTCGTATTGGATTAGTAGTTGTTGTT 58.907 33.333 0.00 0.00 0.00 2.83
788 815 7.544566 CAGTCGTATTGGATTAGTAGTTGTTGT 59.455 37.037 0.00 0.00 0.00 3.32
789 816 7.758076 TCAGTCGTATTGGATTAGTAGTTGTTG 59.242 37.037 0.00 0.00 0.00 3.33
790 817 7.833786 TCAGTCGTATTGGATTAGTAGTTGTT 58.166 34.615 0.00 0.00 0.00 2.83
791 818 7.400599 TCAGTCGTATTGGATTAGTAGTTGT 57.599 36.000 0.00 0.00 0.00 3.32
792 819 8.873215 ATTCAGTCGTATTGGATTAGTAGTTG 57.127 34.615 0.00 0.00 0.00 3.16
793 820 8.692710 TGATTCAGTCGTATTGGATTAGTAGTT 58.307 33.333 0.00 0.00 0.00 2.24
794 821 8.234136 TGATTCAGTCGTATTGGATTAGTAGT 57.766 34.615 0.00 0.00 0.00 2.73
800 827 9.342308 ACAAATATGATTCAGTCGTATTGGATT 57.658 29.630 3.98 0.00 44.47 3.01
801 828 8.777413 CACAAATATGATTCAGTCGTATTGGAT 58.223 33.333 3.98 0.00 44.47 3.41
802 829 7.226523 CCACAAATATGATTCAGTCGTATTGGA 59.773 37.037 3.98 0.00 44.47 3.53
803 830 7.012327 ACCACAAATATGATTCAGTCGTATTGG 59.988 37.037 0.00 0.00 44.47 3.16
804 831 7.919690 ACCACAAATATGATTCAGTCGTATTG 58.080 34.615 0.00 0.00 44.47 1.90
847 874 9.136952 GAAGTACCATTATTACTAGCATAACGG 57.863 37.037 6.03 6.03 0.00 4.44
911 947 5.954150 AGAAAACATAATTCCCATGACAGCT 59.046 36.000 0.00 0.00 0.00 4.24
914 950 9.177608 CTAGAAGAAAACATAATTCCCATGACA 57.822 33.333 0.00 0.00 0.00 3.58
967 1006 4.095632 TCACAAGTTCAAACGCTCAAATGA 59.904 37.500 0.00 0.00 0.00 2.57
976 1015 2.539547 CCTGCAGTCACAAGTTCAAACG 60.540 50.000 13.81 0.00 0.00 3.60
987 1026 1.448540 CGACATCCCCTGCAGTCAC 60.449 63.158 13.81 0.00 0.00 3.67
991 1030 1.742880 CACACGACATCCCCTGCAG 60.743 63.158 6.78 6.78 0.00 4.41
1039 1078 5.419542 CGAATAACTCACCTCATTCTCCAA 58.580 41.667 0.00 0.00 0.00 3.53
1077 1116 8.298729 ACTCACCTCATTCTCTTTTTCTTTTT 57.701 30.769 0.00 0.00 0.00 1.94
1078 1117 7.888250 ACTCACCTCATTCTCTTTTTCTTTT 57.112 32.000 0.00 0.00 0.00 2.27
1082 1121 5.456265 GCAACTCACCTCATTCTCTTTTTC 58.544 41.667 0.00 0.00 0.00 2.29
1111 1150 0.109365 CTCTGAGCCAGTGAGACACG 60.109 60.000 0.00 0.00 39.64 4.49
1134 1173 4.767928 ACTAATAAACACCATGCCGGAAAA 59.232 37.500 5.05 0.00 38.63 2.29
1143 1182 7.394816 ACAGCTAGTTGACTAATAAACACCAT 58.605 34.615 14.09 0.00 0.00 3.55
1158 1197 4.569943 TGGCTTAGAAAGACAGCTAGTTG 58.430 43.478 4.86 4.86 42.97 3.16
1159 1198 4.891992 TGGCTTAGAAAGACAGCTAGTT 57.108 40.909 0.00 0.00 42.97 2.24
1199 1238 3.132029 TTGCAGACACCACCTGGGG 62.132 63.158 0.00 0.00 46.44 4.96
1231 1270 2.289631 CCACACAACTGCCATCTCAGTA 60.290 50.000 0.00 0.00 45.77 2.74
1373 1412 2.654749 TCAGCCTCACGACATTACAG 57.345 50.000 0.00 0.00 0.00 2.74
1378 1417 5.480422 TGGTATTATATCAGCCTCACGACAT 59.520 40.000 0.00 0.00 0.00 3.06
1547 1586 9.910267 AGCACCATTCATATATCTTGCATATAA 57.090 29.630 0.00 0.00 0.00 0.98
1550 1589 8.640063 AAAGCACCATTCATATATCTTGCATA 57.360 30.769 0.00 0.00 0.00 3.14
1560 1599 5.132648 TGGACCTCTAAAGCACCATTCATAT 59.867 40.000 0.00 0.00 0.00 1.78
1710 1750 4.649218 GCCTGGCATTAAAATTTAGAGGGA 59.351 41.667 15.17 0.00 0.00 4.20
1732 1772 2.833794 TGAAACTGGATATACTGGCGC 58.166 47.619 0.00 0.00 0.00 6.53
1767 1807 5.405571 TGACTTTCGAAGAATCTGCAAGTAC 59.594 40.000 0.00 0.00 45.90 2.73
1865 1905 3.679502 GGTTGATGTTTAGTTGCCAATGC 59.320 43.478 0.00 0.00 38.26 3.56
1875 1915 8.511604 ACAAAGATCATAGGGTTGATGTTTAG 57.488 34.615 8.62 6.92 43.66 1.85
1894 1934 6.659242 AGAAAAGACTCAAACTTGGACAAAGA 59.341 34.615 0.00 0.00 39.38 2.52
1927 1985 7.547227 ACCTAAAATAGAAACCAATGTCATGC 58.453 34.615 0.00 0.00 0.00 4.06
1932 1990 7.391620 TCTCGACCTAAAATAGAAACCAATGT 58.608 34.615 0.00 0.00 0.00 2.71
2037 2095 1.956477 AGTGGAATGAAACAGGTGCAC 59.044 47.619 8.80 8.80 33.01 4.57
2043 2101 4.081406 TGGAATCCAGTGGAATGAAACAG 58.919 43.478 17.71 0.00 34.34 3.16
2124 2182 7.403231 TGGAGAACCCTTGAATAGACTCTTTAT 59.597 37.037 0.00 0.00 35.38 1.40
2301 2359 4.860022 AGGTCAAATTCCTGGTTCCTATG 58.140 43.478 0.00 0.00 33.62 2.23
2303 2361 5.280830 GGTAAGGTCAAATTCCTGGTTCCTA 60.281 44.000 0.00 0.00 35.27 2.94
2305 2363 3.762288 GGTAAGGTCAAATTCCTGGTTCC 59.238 47.826 0.00 0.00 35.27 3.62
2397 2455 8.943909 ACTACCATAAAATAGAGCAGTTGTAC 57.056 34.615 0.00 0.00 0.00 2.90
2528 2586 8.331742 GTCATATCACTAGCAGCTTTTAACTTC 58.668 37.037 0.00 0.00 0.00 3.01
2532 2590 5.753438 CGGTCATATCACTAGCAGCTTTTAA 59.247 40.000 0.00 0.00 0.00 1.52
2609 2667 4.080469 ACCTCTGTGAATGATGATTGCTCT 60.080 41.667 0.00 0.00 0.00 4.09
2663 2721 0.546122 CCCCAGGCAGCACTAACATA 59.454 55.000 0.00 0.00 0.00 2.29
2666 2724 1.675641 CACCCCAGGCAGCACTAAC 60.676 63.158 0.00 0.00 0.00 2.34
2753 2812 7.433680 CAAAGGTAGGAAGCAACAAAACTATT 58.566 34.615 0.00 0.00 0.00 1.73
2832 2910 7.787028 TCATGCACTTGTACCTGTATATGTTA 58.213 34.615 0.00 0.00 0.00 2.41
2868 2946 5.860941 AGTTCTATGTGGACCTATGACAG 57.139 43.478 0.00 0.00 0.00 3.51
2900 2978 4.081087 AGCTACCCATAATGGCTATAACCG 60.081 45.833 0.00 0.00 35.79 4.44
2971 3049 2.357517 CGGTCCTGGACAGTGCAC 60.358 66.667 26.94 9.40 33.68 4.57
3341 3419 6.202954 ACAAATATACCTTGTCAGCTAATCGC 59.797 38.462 0.00 0.00 31.29 4.58
3371 3449 3.244700 CCCAGAGTCTCAGTTCCAAATGT 60.245 47.826 1.94 0.00 0.00 2.71
3467 3546 5.875359 TGTGTACATAATTGCGTTGGACATA 59.125 36.000 0.00 0.00 0.00 2.29
3475 3554 9.632807 AAAATGTTTATGTGTACATAATTGCGT 57.367 25.926 15.83 9.46 45.15 5.24
3495 3574 4.398988 ACATCGCATCCACATACAAAATGT 59.601 37.500 0.00 0.00 0.00 2.71
3511 3590 1.573932 CGCCAAACTGAACATCGCA 59.426 52.632 0.00 0.00 0.00 5.10
3526 3605 3.712881 GTGTGGAACTCGTGCGCC 61.713 66.667 4.18 0.00 38.04 6.53
3528 3607 1.492873 CATGTGTGGAACTCGTGCG 59.507 57.895 0.00 0.00 39.99 5.34
3543 3622 1.202927 AGTCCACACAAAGGGTCCATG 60.203 52.381 0.00 0.00 0.00 3.66
3573 3652 6.575244 AAGTAGTCAATGACCCATATTCCA 57.425 37.500 10.12 0.00 32.18 3.53
3601 3680 9.657419 AATCTTGCCTAGGTCAAATAAAAATTG 57.343 29.630 11.31 1.13 0.00 2.32
3705 3784 3.560068 ACACATCGTCTGAACCAAGAAAC 59.440 43.478 0.00 0.00 0.00 2.78
3809 3888 2.151202 CGTTTGCTGTGGTATTCCTGT 58.849 47.619 0.00 0.00 34.23 4.00
3832 3911 4.301072 TCAAGGTTCCTATTGGGTTCAG 57.699 45.455 0.00 0.00 36.25 3.02
3863 3942 0.397564 TAAGACCCCGTTCCCAACAC 59.602 55.000 0.00 0.00 0.00 3.32
3936 4015 3.056465 CCAGGACAAAGACAGTAGAGGAC 60.056 52.174 0.00 0.00 0.00 3.85
4008 4087 7.679783 TCAGGTTATGATATGGTAAGTGGATG 58.320 38.462 0.00 0.00 31.12 3.51
4028 4107 8.333226 AGCCTAAACCTATAACTAATTCAGGT 57.667 34.615 0.00 0.00 41.38 4.00
4093 4173 3.455177 TCCCGGCAACCTGTTATGTAATA 59.545 43.478 0.00 0.00 0.00 0.98
4094 4174 2.240160 TCCCGGCAACCTGTTATGTAAT 59.760 45.455 0.00 0.00 0.00 1.89
4095 4175 1.629353 TCCCGGCAACCTGTTATGTAA 59.371 47.619 0.00 0.00 0.00 2.41
4096 4176 1.277579 TCCCGGCAACCTGTTATGTA 58.722 50.000 0.00 0.00 0.00 2.29
4421 4501 8.558700 GGCTGTTTTTCATGTCATTTATTTTGT 58.441 29.630 0.00 0.00 0.00 2.83
4468 4548 7.648142 TGAAATGAACCTACACTTTCAACATC 58.352 34.615 0.00 0.00 35.42 3.06
4470 4550 7.338196 TCTTGAAATGAACCTACACTTTCAACA 59.662 33.333 5.03 0.00 39.55 3.33
4587 4671 8.064814 GCAACTCAAGTCTTCTTAACACTTAAG 58.935 37.037 0.00 0.00 43.09 1.85
4646 4730 8.533569 TGTTGGAGAGTTGTATAGACATATGA 57.466 34.615 10.38 0.00 34.86 2.15
4712 4913 9.316730 CCAAACAATATATTTCAAGGTTCATGG 57.683 33.333 0.00 0.00 0.00 3.66
4731 4932 3.777522 AGGGTTGAAATTGGACCAAACAA 59.222 39.130 11.82 14.39 35.11 2.83
4742 4943 9.975218 ACAATGTTATAGTCTAGGGTTGAAATT 57.025 29.630 0.00 0.00 0.00 1.82
4936 5140 6.636454 TGAGTTATTCATTCCCTACACCTT 57.364 37.500 0.00 0.00 0.00 3.50
4958 5162 9.153721 TGCAAATTTTCAGCTCCTTATTTTATG 57.846 29.630 0.00 0.00 0.00 1.90
4966 5170 4.039488 TGTGATGCAAATTTTCAGCTCCTT 59.961 37.500 7.56 0.00 0.00 3.36
5011 5216 5.642063 TCAATCCATCTCGTCTTTTTGGTAC 59.358 40.000 0.00 0.00 0.00 3.34
5106 5311 8.739039 CAATCATTGGTGTAAAGGATGTTAGAA 58.261 33.333 0.00 0.00 0.00 2.10
5149 5355 2.512056 TGGTGGTTATGTATTCTGGGGG 59.488 50.000 0.00 0.00 0.00 5.40
5341 8285 5.930135 ACCTACACATGAAGATCAATACCC 58.070 41.667 0.00 0.00 0.00 3.69
5342 8286 9.561069 AATTACCTACACATGAAGATCAATACC 57.439 33.333 0.00 0.00 0.00 2.73
5360 8304 3.023119 CACATGGGCAAGCAATTACCTA 58.977 45.455 0.00 0.00 0.00 3.08
5483 8427 3.782656 ACGAAGTACCAACCTGGAAAT 57.217 42.857 0.00 0.00 41.94 2.17
5583 8527 5.474189 CCCAATTGTTAAAGTTCCGGTCTTA 59.526 40.000 0.00 0.00 0.00 2.10
5759 8703 9.643735 TCCAGTTAAATGGGAAGTAAAAAGTAA 57.356 29.630 21.12 0.00 41.01 2.24
5761 8705 8.418662 GTTCCAGTTAAATGGGAAGTAAAAAGT 58.581 33.333 21.12 0.00 41.11 2.66
5762 8706 8.638873 AGTTCCAGTTAAATGGGAAGTAAAAAG 58.361 33.333 21.12 0.00 41.39 2.27
5763 8707 8.541899 AGTTCCAGTTAAATGGGAAGTAAAAA 57.458 30.769 21.12 3.45 41.39 1.94
5781 8725 3.996150 ATGTTTTGCAGTGAGTTCCAG 57.004 42.857 0.00 0.00 0.00 3.86
5784 8728 4.470462 CAGCTATGTTTTGCAGTGAGTTC 58.530 43.478 0.00 0.00 0.00 3.01
5809 8753 1.806496 TCAGGGTGTCCCATCCTATG 58.194 55.000 7.60 0.00 44.13 2.23
5867 8813 5.959527 GTGCATAAGTCACACATACGATTTG 59.040 40.000 0.00 0.00 34.43 2.32
5898 8844 0.610174 CACTTCTGCTGCTGAGGGTA 59.390 55.000 19.69 1.80 0.00 3.69
6024 8970 7.309990 CCAAGTGGATGGTTTGTATTTGATTCT 60.310 37.037 0.00 0.00 37.39 2.40
6042 8988 2.559698 TGATCGCTTTTCCAAGTGGA 57.440 45.000 0.00 0.00 43.73 4.02
6111 9057 4.965814 TCTCAGACTTGTTGAGCATTTCT 58.034 39.130 0.00 0.00 41.41 2.52
6172 9118 4.000988 CAGTTATCCTACAACAGCCGTTT 58.999 43.478 0.00 0.00 31.13 3.60
6175 9121 3.247006 ACAGTTATCCTACAACAGCCG 57.753 47.619 0.00 0.00 0.00 5.52
6204 9150 1.071542 TCAGCCACGGTCTGAATTCAA 59.928 47.619 9.88 0.00 37.61 2.69
6217 9163 2.225467 GGCCTAATGAGATTCAGCCAC 58.775 52.381 0.00 0.00 39.25 5.01
6236 9182 0.970427 GGTGCAAGGGTGGTTATGGG 60.970 60.000 0.00 0.00 0.00 4.00
6327 9273 9.455847 GGTGATCTCATTTTATCATAAAAGCAC 57.544 33.333 8.52 4.15 34.77 4.40
6361 9307 4.247267 ACTGTGCCATGAAACAGAAATG 57.753 40.909 25.50 8.00 45.43 2.32
6427 9373 5.705609 AACGATATACATGGGAAAATGGC 57.294 39.130 0.00 0.00 31.46 4.40
6446 9392 1.094785 CCCATCCTTTGCCTGTAACG 58.905 55.000 0.00 0.00 0.00 3.18
6531 9477 7.504911 GTGTACCTCCTAATCCAGTCTAATGTA 59.495 40.741 0.00 0.00 0.00 2.29
6535 9481 6.088541 AGTGTACCTCCTAATCCAGTCTAA 57.911 41.667 0.00 0.00 0.00 2.10
6775 9721 4.646492 ACTGACCAAAACTTTCTGCTTCAT 59.354 37.500 0.00 0.00 0.00 2.57
6821 9767 5.720041 ACAAATAAGACCAGCTAGAGTACCA 59.280 40.000 0.00 0.00 0.00 3.25
6848 9794 4.916983 ATCTTCTCTGATCTTGTCCTCG 57.083 45.455 0.00 0.00 0.00 4.63
7027 9973 7.162082 ACTACAGGAACTATTCACCAGAAAAG 58.838 38.462 0.00 0.00 36.02 2.27
7096 10045 5.614308 AGTCAGACAACATGTTCATTCTCA 58.386 37.500 8.48 0.00 0.00 3.27
7160 10316 9.567848 AAAATTAATGATAAAACAGCACTACCG 57.432 29.630 0.00 0.00 0.00 4.02
7351 10507 7.350744 TGCTGTAAGATTTCCATGCATAATT 57.649 32.000 0.00 0.00 34.07 1.40
7728 10886 0.887247 CACCCATTGCGATTCCAACA 59.113 50.000 0.00 0.00 0.00 3.33
7770 10928 5.013079 ACCCATGAGAACAACTGAAGATACA 59.987 40.000 0.00 0.00 0.00 2.29
7824 10982 2.072298 CAGTGAGTAACTCCAAGCTGC 58.928 52.381 0.00 0.00 36.83 5.25
7837 10999 0.473755 TGGCAATGGTGTCAGTGAGT 59.526 50.000 0.00 0.00 41.02 3.41
7838 11000 1.608055 TTGGCAATGGTGTCAGTGAG 58.392 50.000 0.00 0.00 41.33 3.51
7839 11001 2.064434 TTTGGCAATGGTGTCAGTGA 57.936 45.000 0.00 0.00 41.33 3.41
7840 11002 3.243805 TGAATTTGGCAATGGTGTCAGTG 60.244 43.478 0.00 0.00 41.33 3.66
7841 11003 2.964464 TGAATTTGGCAATGGTGTCAGT 59.036 40.909 0.00 0.00 41.33 3.41
8252 11414 1.142465 CCCATCAGTGCTCCAGCTATT 59.858 52.381 0.00 0.00 42.66 1.73
8471 11633 6.258727 ACTGAGCTATAATCAAATGTTCGTGG 59.741 38.462 0.00 0.00 0.00 4.94
8487 11649 3.033909 TGTGGCTATGTGACTGAGCTAT 58.966 45.455 8.73 0.00 36.43 2.97
8491 11653 1.552337 ACCTGTGGCTATGTGACTGAG 59.448 52.381 0.00 0.00 0.00 3.35
8525 11687 5.621193 ACTCTTGGTGCTTACAGTGTTATT 58.379 37.500 0.00 0.00 0.00 1.40
8528 11690 3.560636 ACTCTTGGTGCTTACAGTGTT 57.439 42.857 0.00 0.00 0.00 3.32
8539 11701 4.696877 TGATTACTGCATCAACTCTTGGTG 59.303 41.667 0.00 0.00 44.59 4.17
8540 11702 4.697352 GTGATTACTGCATCAACTCTTGGT 59.303 41.667 0.00 0.00 34.89 3.67
8541 11703 4.095483 GGTGATTACTGCATCAACTCTTGG 59.905 45.833 0.00 0.00 37.81 3.61
8542 11704 4.696877 TGGTGATTACTGCATCAACTCTTG 59.303 41.667 4.80 0.00 40.97 3.02
8543 11705 4.910195 TGGTGATTACTGCATCAACTCTT 58.090 39.130 4.80 0.00 40.97 2.85
8544 11706 4.558226 TGGTGATTACTGCATCAACTCT 57.442 40.909 4.80 0.00 40.97 3.24
8545 11707 4.937620 TCTTGGTGATTACTGCATCAACTC 59.062 41.667 4.80 0.00 40.97 3.01
8546 11708 4.910195 TCTTGGTGATTACTGCATCAACT 58.090 39.130 4.80 0.00 40.97 3.16
8547 11709 4.697352 ACTCTTGGTGATTACTGCATCAAC 59.303 41.667 0.00 0.00 40.79 3.18
8548 11710 4.910195 ACTCTTGGTGATTACTGCATCAA 58.090 39.130 0.00 0.00 34.89 2.57
8549 11711 4.223700 AGACTCTTGGTGATTACTGCATCA 59.776 41.667 0.00 0.00 0.00 3.07
8550 11712 4.569966 CAGACTCTTGGTGATTACTGCATC 59.430 45.833 0.00 0.00 0.00 3.91
8551 11713 4.223700 TCAGACTCTTGGTGATTACTGCAT 59.776 41.667 0.00 0.00 0.00 3.96
8552 11714 3.578282 TCAGACTCTTGGTGATTACTGCA 59.422 43.478 0.00 0.00 0.00 4.41
8553 11715 4.193826 TCAGACTCTTGGTGATTACTGC 57.806 45.455 0.00 0.00 0.00 4.40
8554 11716 5.991606 TGTTTCAGACTCTTGGTGATTACTG 59.008 40.000 0.00 0.00 0.00 2.74
8555 11717 6.174720 TGTTTCAGACTCTTGGTGATTACT 57.825 37.500 0.00 0.00 0.00 2.24
8573 11735 8.268850 AGGACTTGTACATCACATAATGTTTC 57.731 34.615 0.00 0.00 40.32 2.78
8582 11744 4.141597 TGGTTCAAGGACTTGTACATCACA 60.142 41.667 18.98 8.49 40.95 3.58
8591 11753 0.954452 GCCACTGGTTCAAGGACTTG 59.046 55.000 5.72 5.72 41.71 3.16
8599 11761 0.321564 CAAGATCCGCCACTGGTTCA 60.322 55.000 0.00 0.00 31.38 3.18
8609 11771 2.872858 GTTGATAAGACCCAAGATCCGC 59.127 50.000 0.00 0.00 0.00 5.54
8673 11835 2.079158 AGCTTGTGATGTTCATCCACG 58.921 47.619 9.83 6.79 33.78 4.94
8706 11869 9.744468 AGTGAACTTTGTATTGTAATTTTGACC 57.256 29.630 0.00 0.00 0.00 4.02
8735 11898 9.529325 GCACAATATTACTACTACACTGATCAA 57.471 33.333 0.00 0.00 0.00 2.57
8775 11938 2.869233 ATTTGCAATATCCGCACACC 57.131 45.000 0.00 0.00 39.59 4.16
8838 12001 6.436532 GGTGGGATAGGTAGAATAGAATTCGA 59.563 42.308 0.00 0.00 0.00 3.71
8840 12003 7.800300 AGGTGGGATAGGTAGAATAGAATTC 57.200 40.000 0.00 0.00 0.00 2.17
8855 12018 3.838317 GCCATGTATGACTAGGTGGGATA 59.162 47.826 0.00 0.00 0.00 2.59
8856 12019 2.639839 GCCATGTATGACTAGGTGGGAT 59.360 50.000 0.00 0.00 0.00 3.85
8858 12021 1.768275 TGCCATGTATGACTAGGTGGG 59.232 52.381 0.00 0.00 0.00 4.61
8883 12046 0.038892 TGGCTGTTTACGACCTCGAC 60.039 55.000 0.78 0.00 43.02 4.20
8890 12053 9.586435 CATATGATCTATATTGGCTGTTTACGA 57.414 33.333 0.00 0.00 29.37 3.43
8958 12818 8.515473 CCTTTGTCGATTAAAAAGGTTTAAGG 57.485 34.615 17.22 0.00 43.26 2.69
8971 12831 9.715121 AGTATGTCTTAAAACCTTTGTCGATTA 57.285 29.630 0.00 0.00 0.00 1.75
8973 12833 7.333672 GGAGTATGTCTTAAAACCTTTGTCGAT 59.666 37.037 0.00 0.00 0.00 3.59
8974 12834 6.647895 GGAGTATGTCTTAAAACCTTTGTCGA 59.352 38.462 0.00 0.00 0.00 4.20
8975 12835 6.128363 GGGAGTATGTCTTAAAACCTTTGTCG 60.128 42.308 0.00 0.00 0.00 4.35
8976 12836 6.940867 AGGGAGTATGTCTTAAAACCTTTGTC 59.059 38.462 0.00 0.00 0.00 3.18
8977 12837 6.849151 AGGGAGTATGTCTTAAAACCTTTGT 58.151 36.000 0.00 0.00 0.00 2.83
8978 12838 6.374613 GGAGGGAGTATGTCTTAAAACCTTTG 59.625 42.308 0.00 0.00 0.00 2.77
8979 12839 6.482524 GGAGGGAGTATGTCTTAAAACCTTT 58.517 40.000 0.00 0.00 0.00 3.11
8981 12841 4.161754 CGGAGGGAGTATGTCTTAAAACCT 59.838 45.833 0.00 0.00 0.00 3.50
8982 12842 4.081254 ACGGAGGGAGTATGTCTTAAAACC 60.081 45.833 0.00 0.00 0.00 3.27
8983 12843 5.082251 ACGGAGGGAGTATGTCTTAAAAC 57.918 43.478 0.00 0.00 0.00 2.43
8986 12846 4.607239 AGAACGGAGGGAGTATGTCTTAA 58.393 43.478 0.00 0.00 0.00 1.85
8987 12847 4.246712 AGAACGGAGGGAGTATGTCTTA 57.753 45.455 0.00 0.00 0.00 2.10
8988 12848 3.103080 AGAACGGAGGGAGTATGTCTT 57.897 47.619 0.00 0.00 0.00 3.01
8989 12849 2.830651 AGAACGGAGGGAGTATGTCT 57.169 50.000 0.00 0.00 0.00 3.41
8990 12850 4.996788 TTTAGAACGGAGGGAGTATGTC 57.003 45.455 0.00 0.00 0.00 3.06
8991 12851 5.952347 ATTTTAGAACGGAGGGAGTATGT 57.048 39.130 0.00 0.00 0.00 2.29
8992 12852 7.286215 TCTATTTTAGAACGGAGGGAGTATG 57.714 40.000 0.00 0.00 0.00 2.39
8993 12853 7.728981 TCATCTATTTTAGAACGGAGGGAGTAT 59.271 37.037 0.00 0.00 38.50 2.12
8994 12854 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
8995 12855 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
8996 12856 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
8997 12857 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
8998 12858 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
8999 12859 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
9000 12860 7.976734 AGTTGAGTCATCTATTTTAGAACGGAG 59.023 37.037 1.70 0.00 38.50 4.63
9001 12861 7.837863 AGTTGAGTCATCTATTTTAGAACGGA 58.162 34.615 1.70 0.00 38.50 4.69
9002 12862 8.480643 AAGTTGAGTCATCTATTTTAGAACGG 57.519 34.615 4.14 0.00 38.50 4.44
9003 12863 9.746711 CAAAGTTGAGTCATCTATTTTAGAACG 57.253 33.333 4.14 0.00 38.50 3.95
9044 12904 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
9045 12905 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
9046 12906 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
9047 12907 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
9048 12908 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
9049 12909 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
9050 12910 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
9051 12911 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
9052 12912 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
9053 12913 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
9054 12914 3.118038 CCCCTCCGTTCCAAAATAGATGA 60.118 47.826 0.00 0.00 0.00 2.92
9055 12915 3.118038 TCCCCTCCGTTCCAAAATAGATG 60.118 47.826 0.00 0.00 0.00 2.90
9056 12916 3.120108 TCCCCTCCGTTCCAAAATAGAT 58.880 45.455 0.00 0.00 0.00 1.98
9057 12917 2.553464 TCCCCTCCGTTCCAAAATAGA 58.447 47.619 0.00 0.00 0.00 1.98
9058 12918 3.136626 AGATCCCCTCCGTTCCAAAATAG 59.863 47.826 0.00 0.00 0.00 1.73
9059 12919 3.120108 AGATCCCCTCCGTTCCAAAATA 58.880 45.455 0.00 0.00 0.00 1.40
9060 12920 1.923148 AGATCCCCTCCGTTCCAAAAT 59.077 47.619 0.00 0.00 0.00 1.82
9061 12921 1.368374 AGATCCCCTCCGTTCCAAAA 58.632 50.000 0.00 0.00 0.00 2.44
9062 12922 2.116238 CTAGATCCCCTCCGTTCCAAA 58.884 52.381 0.00 0.00 0.00 3.28
9063 12923 1.289830 TCTAGATCCCCTCCGTTCCAA 59.710 52.381 0.00 0.00 0.00 3.53
9064 12924 0.931468 TCTAGATCCCCTCCGTTCCA 59.069 55.000 0.00 0.00 0.00 3.53
9065 12925 2.083628 TTCTAGATCCCCTCCGTTCC 57.916 55.000 0.00 0.00 0.00 3.62
9066 12926 3.231818 TGATTCTAGATCCCCTCCGTTC 58.768 50.000 0.00 0.00 0.00 3.95
9067 12927 3.235200 CTGATTCTAGATCCCCTCCGTT 58.765 50.000 0.00 0.00 0.00 4.44
9068 12928 2.178106 ACTGATTCTAGATCCCCTCCGT 59.822 50.000 0.00 0.00 0.00 4.69
9069 12929 2.560542 CACTGATTCTAGATCCCCTCCG 59.439 54.545 0.00 0.00 0.00 4.63
9070 12930 3.831911 CTCACTGATTCTAGATCCCCTCC 59.168 52.174 0.00 0.00 0.00 4.30
9071 12931 4.479158 ACTCACTGATTCTAGATCCCCTC 58.521 47.826 0.00 0.00 0.00 4.30
9072 12932 4.551215 ACTCACTGATTCTAGATCCCCT 57.449 45.455 0.00 0.00 0.00 4.79
9073 12933 5.836358 AGTAACTCACTGATTCTAGATCCCC 59.164 44.000 0.00 0.00 35.62 4.81
9074 12934 6.969993 AGTAACTCACTGATTCTAGATCCC 57.030 41.667 0.00 0.00 35.62 3.85
9075 12935 9.092876 CAAAAGTAACTCACTGATTCTAGATCC 57.907 37.037 0.00 0.00 37.63 3.36
9076 12936 9.862371 TCAAAAGTAACTCACTGATTCTAGATC 57.138 33.333 0.00 0.00 37.63 2.75
9078 12938 9.698309 CTTCAAAAGTAACTCACTGATTCTAGA 57.302 33.333 0.00 0.00 37.63 2.43
9079 12939 9.698309 TCTTCAAAAGTAACTCACTGATTCTAG 57.302 33.333 0.00 0.00 37.63 2.43
9081 12941 8.964476 TTCTTCAAAAGTAACTCACTGATTCT 57.036 30.769 0.00 0.00 37.63 2.40
9082 12942 9.604626 CATTCTTCAAAAGTAACTCACTGATTC 57.395 33.333 0.00 0.00 37.63 2.52
9083 12943 9.125026 ACATTCTTCAAAAGTAACTCACTGATT 57.875 29.630 0.00 0.00 37.63 2.57
9084 12944 8.682936 ACATTCTTCAAAAGTAACTCACTGAT 57.317 30.769 0.00 0.00 37.63 2.90
9133 12993 5.640357 CCGTGCAAGGTTTCACTAGTAATAA 59.360 40.000 10.93 0.00 0.00 1.40
9135 12995 4.000988 CCGTGCAAGGTTTCACTAGTAAT 58.999 43.478 10.93 0.00 0.00 1.89
9136 12996 3.395639 CCGTGCAAGGTTTCACTAGTAA 58.604 45.455 10.93 0.00 0.00 2.24
9162 15549 0.670546 CTCCCTCGAACGTGCAACAT 60.671 55.000 0.00 0.00 35.74 2.71
9163 15550 1.300620 CTCCCTCGAACGTGCAACA 60.301 57.895 0.00 0.00 35.74 3.33
9164 15551 2.668280 GCTCCCTCGAACGTGCAAC 61.668 63.158 0.00 0.00 0.00 4.17
9165 15552 2.357034 GCTCCCTCGAACGTGCAA 60.357 61.111 0.00 0.00 0.00 4.08
9166 15553 2.942796 ATGCTCCCTCGAACGTGCA 61.943 57.895 9.69 9.69 34.88 4.57
9167 15554 2.125512 ATGCTCCCTCGAACGTGC 60.126 61.111 0.00 0.00 0.00 5.34
9168 15555 2.456119 GCATGCTCCCTCGAACGTG 61.456 63.158 11.37 0.00 0.00 4.49
9169 15556 2.125512 GCATGCTCCCTCGAACGT 60.126 61.111 11.37 0.00 0.00 3.99
9171 15558 0.379669 CATTGCATGCTCCCTCGAAC 59.620 55.000 20.33 0.00 0.00 3.95
9172 15559 0.035152 ACATTGCATGCTCCCTCGAA 60.035 50.000 20.33 2.74 0.00 3.71
9174 15561 1.725665 CACATTGCATGCTCCCTCG 59.274 57.895 20.33 4.04 0.00 4.63
9176 15563 3.612251 GCACATTGCATGCTCCCT 58.388 55.556 20.33 0.00 44.26 4.20
9185 15572 4.336433 TCTTTATCCTGCTAAGCACATTGC 59.664 41.667 0.00 0.00 45.46 3.56
9186 15573 6.441093 TTCTTTATCCTGCTAAGCACATTG 57.559 37.500 0.00 0.00 33.79 2.82
9188 15575 4.578105 GCTTCTTTATCCTGCTAAGCACAT 59.422 41.667 0.00 0.00 39.24 3.21
9189 15576 3.941483 GCTTCTTTATCCTGCTAAGCACA 59.059 43.478 0.00 0.00 39.24 4.57
9190 15577 3.941483 TGCTTCTTTATCCTGCTAAGCAC 59.059 43.478 0.00 0.00 43.03 4.40
9191 15578 4.220693 TGCTTCTTTATCCTGCTAAGCA 57.779 40.909 0.00 0.00 44.98 3.91
9196 15583 7.493645 GCAATAAAATTGCTTCTTTATCCTGCT 59.506 33.333 15.55 0.00 41.87 4.24
9197 15584 7.254556 GGCAATAAAATTGCTTCTTTATCCTGC 60.255 37.037 20.47 7.92 44.36 4.85
9198 15585 7.765360 TGGCAATAAAATTGCTTCTTTATCCTG 59.235 33.333 20.47 0.00 44.36 3.86
9199 15586 7.765819 GTGGCAATAAAATTGCTTCTTTATCCT 59.234 33.333 20.47 0.00 44.36 3.24
9200 15587 7.254084 CGTGGCAATAAAATTGCTTCTTTATCC 60.254 37.037 20.47 5.13 44.36 2.59
9201 15588 7.612266 CGTGGCAATAAAATTGCTTCTTTATC 58.388 34.615 20.47 5.71 44.36 1.75
9202 15589 6.035975 GCGTGGCAATAAAATTGCTTCTTTAT 59.964 34.615 20.47 0.00 44.36 1.40
9203 15590 5.347364 GCGTGGCAATAAAATTGCTTCTTTA 59.653 36.000 20.47 0.00 44.36 1.85
9204 15591 4.152223 GCGTGGCAATAAAATTGCTTCTTT 59.848 37.500 20.47 0.00 44.36 2.52
9205 15592 3.679502 GCGTGGCAATAAAATTGCTTCTT 59.320 39.130 20.47 0.00 44.36 2.52
9206 15593 3.056607 AGCGTGGCAATAAAATTGCTTCT 60.057 39.130 20.47 11.42 44.36 2.85
9207 15594 3.061161 CAGCGTGGCAATAAAATTGCTTC 59.939 43.478 20.47 13.77 44.36 3.86
9209 15596 2.609350 CAGCGTGGCAATAAAATTGCT 58.391 42.857 20.47 1.87 44.36 3.91
9210 15597 1.660104 CCAGCGTGGCAATAAAATTGC 59.340 47.619 14.71 14.71 44.22 3.56
9213 15600 5.590530 TTTATCCAGCGTGGCAATAAAAT 57.409 34.783 0.00 0.00 37.47 1.82
9261 16073 2.674954 CATCGTTGCCAAATCAAGCAA 58.325 42.857 0.00 0.00 46.26 3.91
9281 16093 3.716601 ACCACAAGTTAAATGCACAAGC 58.283 40.909 0.00 0.00 42.57 4.01
9327 16139 1.481871 CAAGCTCCCCTTCGTAGGTA 58.518 55.000 7.37 0.00 40.19 3.08
9329 16141 1.153349 GCAAGCTCCCCTTCGTAGG 60.153 63.158 0.14 0.14 41.60 3.18
9387 16199 6.442112 GTGCTTAAGAAGATGGAATATTGCC 58.558 40.000 6.67 1.20 0.00 4.52
9394 16206 2.027192 AGGCGTGCTTAAGAAGATGGAA 60.027 45.455 6.67 0.00 0.00 3.53
9406 16218 1.369625 GTGCTTATGTAGGCGTGCTT 58.630 50.000 0.00 0.00 0.00 3.91
9408 16220 0.462047 AGGTGCTTATGTAGGCGTGC 60.462 55.000 0.00 0.00 0.00 5.34
9409 16221 1.665679 CAAGGTGCTTATGTAGGCGTG 59.334 52.381 0.00 0.00 0.00 5.34
9412 16224 1.750193 TGCAAGGTGCTTATGTAGGC 58.250 50.000 1.43 0.00 45.31 3.93



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.