Multiple sequence alignment - TraesCS7A01G239300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G239300 chr7A 100.000 4115 0 0 1 4115 213804716 213808830 0.000000e+00 7600
1 TraesCS7A01G239300 chr7A 92.457 411 31 0 3705 4115 13232887 13232477 4.580000e-164 588
2 TraesCS7A01G239300 chr7A 91.469 422 27 2 3703 4115 482734548 482734969 4.610000e-159 571
3 TraesCS7A01G239300 chr7B 96.069 3129 94 13 588 3706 197471114 197474223 0.000000e+00 5070
4 TraesCS7A01G239300 chr2B 98.497 599 7 2 1 598 123119841 123120438 0.000000e+00 1055
5 TraesCS7A01G239300 chr2B 98.651 593 7 1 1 592 52464401 52463809 0.000000e+00 1050
6 TraesCS7A01G239300 chr4A 98.981 589 5 1 1 588 210947836 210947248 0.000000e+00 1053
7 TraesCS7A01G239300 chr3B 98.816 591 6 1 1 590 819354590 819355180 0.000000e+00 1051
8 TraesCS7A01G239300 chr3B 98.814 590 6 1 1 589 793115725 793116314 0.000000e+00 1050
9 TraesCS7A01G239300 chr6B 98.978 587 5 1 2 587 33779047 33779633 0.000000e+00 1050
10 TraesCS7A01G239300 chr5B 98.812 589 6 1 1 588 337173727 337174315 0.000000e+00 1048
11 TraesCS7A01G239300 chr1A 98.810 588 6 1 1 587 559618314 559618901 0.000000e+00 1046
12 TraesCS7A01G239300 chr1A 98.810 588 6 1 1 587 590335560 590334973 0.000000e+00 1046
13 TraesCS7A01G239300 chr1A 90.238 420 32 2 3705 4115 103630791 103630372 1.300000e-149 540
14 TraesCS7A01G239300 chr2D 93.902 410 25 0 3705 4114 535579111 535578702 1.620000e-173 619
15 TraesCS7A01G239300 chr2A 92.961 412 29 0 3704 4115 599554296 599553885 5.890000e-168 601
16 TraesCS7A01G239300 chr2A 91.847 417 33 1 3700 4115 529700145 529699729 7.670000e-162 580
17 TraesCS7A01G239300 chr7D 92.476 412 31 0 3704 4115 605251257 605250846 1.270000e-164 590
18 TraesCS7A01G239300 chr5D 90.754 411 38 0 3705 4115 168507784 168507374 2.160000e-152 549
19 TraesCS7A01G239300 chr3D 91.837 392 27 4 3703 4092 135246083 135246471 3.620000e-150 542


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G239300 chr7A 213804716 213808830 4114 False 7600 7600 100.000 1 4115 1 chr7A.!!$F1 4114
1 TraesCS7A01G239300 chr7B 197471114 197474223 3109 False 5070 5070 96.069 588 3706 1 chr7B.!!$F1 3118
2 TraesCS7A01G239300 chr2B 123119841 123120438 597 False 1055 1055 98.497 1 598 1 chr2B.!!$F1 597
3 TraesCS7A01G239300 chr2B 52463809 52464401 592 True 1050 1050 98.651 1 592 1 chr2B.!!$R1 591
4 TraesCS7A01G239300 chr4A 210947248 210947836 588 True 1053 1053 98.981 1 588 1 chr4A.!!$R1 587
5 TraesCS7A01G239300 chr3B 819354590 819355180 590 False 1051 1051 98.816 1 590 1 chr3B.!!$F2 589
6 TraesCS7A01G239300 chr3B 793115725 793116314 589 False 1050 1050 98.814 1 589 1 chr3B.!!$F1 588
7 TraesCS7A01G239300 chr6B 33779047 33779633 586 False 1050 1050 98.978 2 587 1 chr6B.!!$F1 585
8 TraesCS7A01G239300 chr5B 337173727 337174315 588 False 1048 1048 98.812 1 588 1 chr5B.!!$F1 587
9 TraesCS7A01G239300 chr1A 559618314 559618901 587 False 1046 1046 98.810 1 587 1 chr1A.!!$F1 586
10 TraesCS7A01G239300 chr1A 590334973 590335560 587 True 1046 1046 98.810 1 587 1 chr1A.!!$R2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 565 0.899720 CTAGAGGGTTGTGCCGGTTA 59.100 55.0 1.90 0.00 38.44 2.85 F
1400 1404 0.454452 GGCGTCATGGCGAAAAACTC 60.454 55.0 26.38 2.91 0.00 3.01 F
1921 1928 0.116342 TCCAGTAGCCCCAGACTTCA 59.884 55.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 1906 0.616111 AGTCTGGGGCTACTGGACTG 60.616 60.0 0.00 0.0 36.15 3.51 R
3074 3084 0.482446 TCTTGGGAACAGGCCAATGT 59.518 50.0 5.01 0.0 44.54 2.71 R
3710 3722 0.036294 GCTAATCCCCTATGCCGGTC 60.036 60.0 1.90 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.706594 CTCTAACCTGATTGCCTGGAGTA 59.293 47.826 0.00 0.00 37.33 2.59
160 161 2.924757 TGCCACATCAGAGATCATCC 57.075 50.000 0.00 0.00 0.00 3.51
417 418 2.564771 CCACAGTTTGAGACTTGCAGA 58.435 47.619 0.00 0.00 36.10 4.26
564 565 0.899720 CTAGAGGGTTGTGCCGGTTA 59.100 55.000 1.90 0.00 38.44 2.85
708 710 3.430042 AGAAGAAGAAATGCCAGCTGA 57.570 42.857 17.39 0.00 0.00 4.26
737 739 1.065854 CGTGGGAGGAGCTCTTTTGAT 60.066 52.381 14.64 0.00 0.00 2.57
749 751 5.012893 AGCTCTTTTGATCGGAGGATTTTT 58.987 37.500 6.84 0.00 31.51 1.94
753 755 7.466746 TCTTTTGATCGGAGGATTTTTGAAT 57.533 32.000 0.00 0.00 31.51 2.57
841 845 3.260380 AGCACAGCCTCTGACATATATCC 59.740 47.826 0.29 0.00 35.18 2.59
908 912 1.076438 CCTTCCTTTCCTTCCCCTGT 58.924 55.000 0.00 0.00 0.00 4.00
909 913 1.429299 CCTTCCTTTCCTTCCCCTGTT 59.571 52.381 0.00 0.00 0.00 3.16
910 914 2.158310 CCTTCCTTTCCTTCCCCTGTTT 60.158 50.000 0.00 0.00 0.00 2.83
911 915 3.576861 CTTCCTTTCCTTCCCCTGTTTT 58.423 45.455 0.00 0.00 0.00 2.43
912 916 2.957474 TCCTTTCCTTCCCCTGTTTTG 58.043 47.619 0.00 0.00 0.00 2.44
926 930 4.173256 CCTGTTTTGTTTCAAGACACACC 58.827 43.478 2.53 0.00 0.00 4.16
956 960 2.335712 CCAAGGCGGTCAAAGCTCC 61.336 63.158 0.00 0.00 34.52 4.70
1067 1071 0.603569 GTGGTGGATCGTCTCACTGT 59.396 55.000 0.76 0.00 34.57 3.55
1073 1077 1.178276 GATCGTCTCACTGTCCCTGT 58.822 55.000 0.00 0.00 0.00 4.00
1127 1131 2.594303 CCTGCTGGTGGCGTTTCA 60.594 61.111 0.51 0.00 45.43 2.69
1132 1136 1.672356 CTGGTGGCGTTTCAGGAGG 60.672 63.158 0.00 0.00 0.00 4.30
1163 1167 1.183030 TCGAAGGTCTTCTTGCCCGA 61.183 55.000 8.79 0.00 37.44 5.14
1165 1169 0.673956 GAAGGTCTTCTTGCCCGACC 60.674 60.000 3.65 0.00 45.88 4.79
1390 1394 1.772182 GACTAAGATCGGCGTCATGG 58.228 55.000 6.85 1.81 0.00 3.66
1400 1404 0.454452 GGCGTCATGGCGAAAAACTC 60.454 55.000 26.38 2.91 0.00 3.01
1471 1475 1.227118 GCGCTCTTCTGCTACTCCC 60.227 63.158 0.00 0.00 0.00 4.30
1473 1477 1.439644 GCTCTTCTGCTACTCCCCG 59.560 63.158 0.00 0.00 0.00 5.73
1515 1519 1.332195 AGGAACTTGCTTTGCCTTCC 58.668 50.000 0.00 0.00 27.25 3.46
1584 1588 1.115467 AGATGTGGTGGGTCGATCTC 58.885 55.000 0.00 0.00 0.00 2.75
1602 1606 1.936547 CTCTCCTTTGGCGTCTTATGC 59.063 52.381 0.00 0.00 0.00 3.14
1616 1620 3.001736 GTCTTATGCTGTGATCCTTTCGC 59.998 47.826 0.00 0.00 35.31 4.70
1635 1639 0.972134 CTGAGAGCCCTGTTCTGACA 59.028 55.000 0.00 0.00 0.00 3.58
1684 1688 1.586422 TCCGCTAGAATTGCATCAGC 58.414 50.000 0.00 0.00 42.57 4.26
1702 1706 6.810182 GCATCAGCAACAATTATCAAGAACTT 59.190 34.615 0.00 0.00 41.58 2.66
1734 1738 1.672356 CAGTGGAAAGACCCTGCGG 60.672 63.158 0.00 0.00 38.00 5.69
1768 1772 2.260434 GTACGGGCGCTTCAGTGA 59.740 61.111 7.64 0.00 0.00 3.41
1770 1774 1.141019 TACGGGCGCTTCAGTGATC 59.859 57.895 7.64 0.00 0.00 2.92
1791 1795 4.811908 TCATCAAAGCATGGTCATTTGTG 58.188 39.130 0.00 1.76 35.80 3.33
1792 1796 4.281435 TCATCAAAGCATGGTCATTTGTGT 59.719 37.500 0.00 0.00 35.80 3.72
1793 1797 4.241590 TCAAAGCATGGTCATTTGTGTC 57.758 40.909 0.00 0.00 35.80 3.67
1794 1798 3.890756 TCAAAGCATGGTCATTTGTGTCT 59.109 39.130 0.00 0.00 35.80 3.41
1795 1799 3.928727 AAGCATGGTCATTTGTGTCTG 57.071 42.857 0.00 0.00 0.00 3.51
1796 1800 3.144657 AGCATGGTCATTTGTGTCTGA 57.855 42.857 0.00 0.00 0.00 3.27
1899 1906 1.609072 GTTCTGTCAAGCCCCTTTGTC 59.391 52.381 0.00 0.00 0.00 3.18
1920 1927 0.537653 GTCCAGTAGCCCCAGACTTC 59.462 60.000 0.00 0.00 0.00 3.01
1921 1928 0.116342 TCCAGTAGCCCCAGACTTCA 59.884 55.000 0.00 0.00 0.00 3.02
1941 1948 5.108187 TCATCTGCTTGCTTAAAGGATCT 57.892 39.130 0.00 0.00 35.44 2.75
1953 1960 6.207417 TGCTTAAAGGATCTGTTCTTTTCTGG 59.793 38.462 0.00 0.00 35.47 3.86
1984 1991 7.665974 ACTTAAAATCGGGACAAAATTCTCTCT 59.334 33.333 0.00 0.00 0.00 3.10
2010 2020 2.034687 CTGCCCACCCTGGAAGTG 59.965 66.667 0.00 0.00 40.96 3.16
2102 2112 1.896183 CCACGGGTGTGTGCAATGA 60.896 57.895 0.00 0.00 44.92 2.57
2117 2127 4.064388 TGCAATGATCAACTGAAAGACGA 58.936 39.130 11.36 0.00 37.43 4.20
2155 2165 3.625897 CACCACCGGTCCAGAGCA 61.626 66.667 2.59 0.00 31.02 4.26
2223 2233 0.312102 TGTATCTGGCAGCGATCGAG 59.688 55.000 21.57 11.59 0.00 4.04
2272 2282 1.339055 GCATTCAGCGCATAGGGGATA 60.339 52.381 11.47 0.00 0.00 2.59
2273 2283 2.681976 GCATTCAGCGCATAGGGGATAT 60.682 50.000 11.47 0.00 0.00 1.63
2285 2295 5.477984 GCATAGGGGATATTGCAATCAAGAA 59.522 40.000 16.86 0.00 35.37 2.52
2332 2342 5.948992 AACTGAGAAGTCACATAAAAGGC 57.051 39.130 0.00 0.00 0.00 4.35
2349 2359 0.475906 GGCTACCTGATCTTGGCCAT 59.524 55.000 6.09 0.00 39.38 4.40
2367 2377 3.446570 GGTGCTCTGGTGCATGGC 61.447 66.667 0.00 0.00 45.23 4.40
2404 2414 2.128535 TGGACAAAGAAGGGGTGTGTA 58.871 47.619 0.00 0.00 0.00 2.90
2477 2487 7.332926 CCGGTTATGGAGATCAGATGATAAAAG 59.667 40.741 0.00 0.00 34.37 2.27
2544 2554 0.675633 GGCGATGGAATGGAAATGGG 59.324 55.000 0.00 0.00 0.00 4.00
2638 2648 2.220133 GCGAAGTCGAAGCTTTGTTACA 59.780 45.455 13.49 0.00 43.02 2.41
2640 2650 4.090930 GCGAAGTCGAAGCTTTGTTACATA 59.909 41.667 13.49 0.00 43.02 2.29
2683 2693 7.709947 TGAAATTGCTGAGAATGATATCAACC 58.290 34.615 9.99 4.62 0.00 3.77
2687 2697 5.759059 TGCTGAGAATGATATCAACCCTTT 58.241 37.500 9.99 0.00 0.00 3.11
2712 2722 3.982516 TGTAGAGAGTAGGCTGGTCAAT 58.017 45.455 0.00 0.00 0.00 2.57
2724 2734 2.291741 GCTGGTCAATATTAGCTGTGGC 59.708 50.000 0.00 0.00 39.06 5.01
2731 2741 6.458342 GGTCAATATTAGCTGTGGCAAGTTAC 60.458 42.308 0.00 0.00 41.70 2.50
2790 2800 3.450817 TGATCACAGTATGGACGATGGTT 59.549 43.478 0.00 0.00 43.62 3.67
2821 2831 1.219124 GGAATGAGCTGGAGACGCA 59.781 57.895 0.00 0.00 33.30 5.24
2877 2887 2.592102 AGAGCTTTCATGGCAAAGGA 57.408 45.000 8.50 0.00 34.42 3.36
3074 3084 3.377485 GTCTACGACATGCCTCTGAAGTA 59.623 47.826 0.00 0.00 32.09 2.24
3106 3116 4.262617 GTTCCCAAGACCCTATGTTCTTC 58.737 47.826 0.00 0.00 0.00 2.87
3114 3124 5.087323 AGACCCTATGTTCTTCAGTCTTGA 58.913 41.667 0.00 0.00 28.00 3.02
3127 3137 8.128322 TCTTCAGTCTTGAGCTTTTATCTAGT 57.872 34.615 0.00 0.00 34.15 2.57
3128 3138 9.244292 TCTTCAGTCTTGAGCTTTTATCTAGTA 57.756 33.333 0.00 0.00 34.15 1.82
3200 3210 4.832248 TCGCTGAATCTTGTTATTCCTGT 58.168 39.130 0.00 0.00 35.40 4.00
3207 3217 7.062322 TGAATCTTGTTATTCCTGTATGGCAT 58.938 34.615 4.88 4.88 35.40 4.40
3264 3274 7.066766 TGGCAATTTTAATGTGGAATTTATGCC 59.933 33.333 0.00 0.00 33.45 4.40
3273 3283 4.341806 TGTGGAATTTATGCCTTATGCCTG 59.658 41.667 0.00 0.00 40.16 4.85
3282 3292 3.815809 TGCCTTATGCCTGTATGGTTAC 58.184 45.455 0.00 0.00 40.16 2.50
3288 3298 8.047310 GCCTTATGCCTGTATGGTTACTTATAT 58.953 37.037 0.00 0.00 38.35 0.86
3328 3338 9.775854 CTGAATTATCAGTATTCTTCCATGACT 57.224 33.333 0.00 0.00 46.60 3.41
3329 3339 9.551734 TGAATTATCAGTATTCTTCCATGACTG 57.448 33.333 0.00 0.00 39.09 3.51
3411 3421 9.916397 GTTTTATCATATGTATATAACCGCAGC 57.084 33.333 1.90 0.00 0.00 5.25
3461 3471 0.249657 CCTAGCAGGAAGATCGGCAC 60.250 60.000 0.00 0.00 37.67 5.01
3558 3570 4.525411 AAAAACATCGACGAAACGAACT 57.475 36.364 0.00 0.00 45.16 3.01
3585 3597 2.438868 AACGCTCCCTTTTTGCATTC 57.561 45.000 0.00 0.00 0.00 2.67
3636 3648 2.927028 CTCCCATTCTGCATGATCACA 58.073 47.619 0.00 0.00 34.31 3.58
3670 3682 2.008329 GTGATCTCTTGCCAGCTTCAG 58.992 52.381 0.00 0.00 0.00 3.02
3710 3722 3.940657 GCTTCAGCAGCTAGTGTTATG 57.059 47.619 0.00 0.00 46.27 1.90
3711 3723 3.525537 GCTTCAGCAGCTAGTGTTATGA 58.474 45.455 0.00 0.00 46.27 2.15
3712 3724 3.308323 GCTTCAGCAGCTAGTGTTATGAC 59.692 47.826 0.00 0.00 46.27 3.06
3713 3725 3.526931 TCAGCAGCTAGTGTTATGACC 57.473 47.619 0.00 0.00 0.00 4.02
3714 3726 2.159240 TCAGCAGCTAGTGTTATGACCG 60.159 50.000 0.00 0.00 0.00 4.79
3715 3727 1.137086 AGCAGCTAGTGTTATGACCGG 59.863 52.381 0.00 0.00 0.00 5.28
3716 3728 1.571919 CAGCTAGTGTTATGACCGGC 58.428 55.000 0.00 0.00 0.00 6.13
3717 3729 1.134818 CAGCTAGTGTTATGACCGGCA 60.135 52.381 0.00 0.00 0.00 5.69
3718 3730 1.762957 AGCTAGTGTTATGACCGGCAT 59.237 47.619 14.43 14.43 41.08 4.40
3719 3731 2.963101 AGCTAGTGTTATGACCGGCATA 59.037 45.455 0.00 7.99 38.44 3.14
3720 3732 3.005897 AGCTAGTGTTATGACCGGCATAG 59.994 47.826 15.17 8.42 40.40 2.23
3721 3733 2.910688 AGTGTTATGACCGGCATAGG 57.089 50.000 15.17 0.00 40.40 2.57
3722 3734 1.416401 AGTGTTATGACCGGCATAGGG 59.584 52.381 15.17 0.00 40.40 3.53
3723 3735 0.762418 TGTTATGACCGGCATAGGGG 59.238 55.000 15.17 0.00 40.40 4.79
3724 3736 1.053424 GTTATGACCGGCATAGGGGA 58.947 55.000 15.17 2.64 40.40 4.81
3725 3737 1.628846 GTTATGACCGGCATAGGGGAT 59.371 52.381 15.17 0.00 40.40 3.85
3726 3738 2.038863 TATGACCGGCATAGGGGATT 57.961 50.000 0.00 0.00 38.44 3.01
3727 3739 2.038863 ATGACCGGCATAGGGGATTA 57.961 50.000 0.00 0.00 34.82 1.75
3728 3740 1.348064 TGACCGGCATAGGGGATTAG 58.652 55.000 0.00 0.00 35.02 1.73
3729 3741 0.036294 GACCGGCATAGGGGATTAGC 60.036 60.000 0.00 0.00 35.02 3.09
3730 3742 1.299976 CCGGCATAGGGGATTAGCC 59.700 63.158 0.00 0.00 41.86 3.93
3742 3754 2.863809 GGATTAGCCCAGTGGGTTATG 58.136 52.381 29.23 3.88 46.51 1.90
3743 3755 2.489073 GGATTAGCCCAGTGGGTTATGG 60.489 54.545 29.23 3.08 46.51 2.74
3744 3756 0.257616 TTAGCCCAGTGGGTTATGGC 59.742 55.000 29.23 13.66 46.51 4.40
3745 3757 1.641552 TAGCCCAGTGGGTTATGGCC 61.642 60.000 29.23 10.77 46.51 5.36
3759 3771 6.819397 GGTTATGGCCCAAGTATCTTAATC 57.181 41.667 0.00 0.00 0.00 1.75
3760 3772 6.303839 GGTTATGGCCCAAGTATCTTAATCA 58.696 40.000 0.00 0.00 0.00 2.57
3761 3773 6.431234 GGTTATGGCCCAAGTATCTTAATCAG 59.569 42.308 0.00 0.00 0.00 2.90
3762 3774 4.437682 TGGCCCAAGTATCTTAATCAGG 57.562 45.455 0.00 0.00 0.00 3.86
3763 3775 3.138283 TGGCCCAAGTATCTTAATCAGGG 59.862 47.826 0.00 0.00 38.10 4.45
3764 3776 3.498661 GGCCCAAGTATCTTAATCAGGGG 60.499 52.174 0.00 0.00 35.58 4.79
3765 3777 3.756117 CCCAAGTATCTTAATCAGGGGC 58.244 50.000 0.00 0.00 0.00 5.80
3766 3778 3.395941 CCCAAGTATCTTAATCAGGGGCT 59.604 47.826 0.00 0.00 0.00 5.19
3767 3779 4.141158 CCCAAGTATCTTAATCAGGGGCTT 60.141 45.833 0.00 0.00 0.00 4.35
3768 3780 5.073144 CCCAAGTATCTTAATCAGGGGCTTA 59.927 44.000 0.00 0.00 0.00 3.09
3769 3781 6.234177 CCAAGTATCTTAATCAGGGGCTTAG 58.766 44.000 0.00 0.00 0.00 2.18
3770 3782 6.183361 CCAAGTATCTTAATCAGGGGCTTAGT 60.183 42.308 0.00 0.00 0.00 2.24
3771 3783 7.283329 CAAGTATCTTAATCAGGGGCTTAGTT 58.717 38.462 0.00 0.00 0.00 2.24
3772 3784 7.068686 AGTATCTTAATCAGGGGCTTAGTTC 57.931 40.000 0.00 0.00 0.00 3.01
3773 3785 5.975988 ATCTTAATCAGGGGCTTAGTTCA 57.024 39.130 0.00 0.00 0.00 3.18
3774 3786 5.772393 TCTTAATCAGGGGCTTAGTTCAA 57.228 39.130 0.00 0.00 0.00 2.69
3775 3787 6.327386 TCTTAATCAGGGGCTTAGTTCAAT 57.673 37.500 0.00 0.00 0.00 2.57
3776 3788 6.731467 TCTTAATCAGGGGCTTAGTTCAATT 58.269 36.000 0.00 0.00 0.00 2.32
3777 3789 7.867921 TCTTAATCAGGGGCTTAGTTCAATTA 58.132 34.615 0.00 0.00 0.00 1.40
3778 3790 8.502738 TCTTAATCAGGGGCTTAGTTCAATTAT 58.497 33.333 0.00 0.00 0.00 1.28
3779 3791 8.691661 TTAATCAGGGGCTTAGTTCAATTATC 57.308 34.615 0.00 0.00 0.00 1.75
3780 3792 5.975988 TCAGGGGCTTAGTTCAATTATCT 57.024 39.130 0.00 0.00 0.00 1.98
3781 3793 6.327386 TCAGGGGCTTAGTTCAATTATCTT 57.673 37.500 0.00 0.00 0.00 2.40
3782 3794 7.446106 TCAGGGGCTTAGTTCAATTATCTTA 57.554 36.000 0.00 0.00 0.00 2.10
3783 3795 8.045720 TCAGGGGCTTAGTTCAATTATCTTAT 57.954 34.615 0.00 0.00 0.00 1.73
3784 3796 8.157476 TCAGGGGCTTAGTTCAATTATCTTATC 58.843 37.037 0.00 0.00 0.00 1.75
3785 3797 7.118390 CAGGGGCTTAGTTCAATTATCTTATCG 59.882 40.741 0.00 0.00 0.00 2.92
3786 3798 6.935208 GGGGCTTAGTTCAATTATCTTATCGT 59.065 38.462 0.00 0.00 0.00 3.73
3787 3799 8.092687 GGGGCTTAGTTCAATTATCTTATCGTA 58.907 37.037 0.00 0.00 0.00 3.43
3788 3800 9.654663 GGGCTTAGTTCAATTATCTTATCGTAT 57.345 33.333 0.00 0.00 0.00 3.06
3808 3820 8.624701 TCGTATTAGAATCGTTTGTTTAGGAG 57.375 34.615 0.00 0.00 0.00 3.69
3809 3821 8.246180 TCGTATTAGAATCGTTTGTTTAGGAGT 58.754 33.333 0.00 0.00 0.00 3.85
3810 3822 8.529911 CGTATTAGAATCGTTTGTTTAGGAGTC 58.470 37.037 0.00 0.00 0.00 3.36
3811 3823 9.362539 GTATTAGAATCGTTTGTTTAGGAGTCA 57.637 33.333 0.00 0.00 31.57 3.41
3812 3824 8.842358 ATTAGAATCGTTTGTTTAGGAGTCAA 57.158 30.769 0.00 0.00 31.57 3.18
3813 3825 6.787085 AGAATCGTTTGTTTAGGAGTCAAG 57.213 37.500 0.00 0.00 31.57 3.02
3814 3826 6.289064 AGAATCGTTTGTTTAGGAGTCAAGT 58.711 36.000 0.00 0.00 31.57 3.16
3815 3827 7.439381 AGAATCGTTTGTTTAGGAGTCAAGTA 58.561 34.615 0.00 0.00 31.57 2.24
3816 3828 7.929785 AGAATCGTTTGTTTAGGAGTCAAGTAA 59.070 33.333 0.00 0.00 31.57 2.24
3817 3829 8.441312 AATCGTTTGTTTAGGAGTCAAGTAAA 57.559 30.769 0.00 0.00 0.00 2.01
3818 3830 7.237920 TCGTTTGTTTAGGAGTCAAGTAAAC 57.762 36.000 12.03 12.03 37.23 2.01
3819 3831 6.258507 TCGTTTGTTTAGGAGTCAAGTAAACC 59.741 38.462 14.59 0.00 36.31 3.27
3820 3832 6.259387 CGTTTGTTTAGGAGTCAAGTAAACCT 59.741 38.462 14.59 0.00 36.31 3.50
3821 3833 7.517893 CGTTTGTTTAGGAGTCAAGTAAACCTC 60.518 40.741 14.59 0.00 36.31 3.85
3822 3834 6.742559 TGTTTAGGAGTCAAGTAAACCTCT 57.257 37.500 14.59 0.00 36.31 3.69
3823 3835 6.756221 TGTTTAGGAGTCAAGTAAACCTCTC 58.244 40.000 14.59 0.00 36.31 3.20
3824 3836 6.553852 TGTTTAGGAGTCAAGTAAACCTCTCT 59.446 38.462 14.59 0.00 36.31 3.10
3825 3837 7.727186 TGTTTAGGAGTCAAGTAAACCTCTCTA 59.273 37.037 14.59 0.00 36.31 2.43
3826 3838 8.751242 GTTTAGGAGTCAAGTAAACCTCTCTAT 58.249 37.037 9.36 0.00 32.70 1.98
3827 3839 9.986157 TTTAGGAGTCAAGTAAACCTCTCTATA 57.014 33.333 0.00 0.00 32.90 1.31
3854 3866 8.971032 AAGGAGAGGAGATGTATCAATCTAAT 57.029 34.615 0.00 0.00 37.03 1.73
3855 3867 8.593945 AGGAGAGGAGATGTATCAATCTAATC 57.406 38.462 0.00 0.00 37.03 1.75
3856 3868 8.176105 AGGAGAGGAGATGTATCAATCTAATCA 58.824 37.037 0.00 0.00 37.03 2.57
3857 3869 8.811017 GGAGAGGAGATGTATCAATCTAATCAA 58.189 37.037 0.00 0.00 37.03 2.57
3858 3870 9.859427 GAGAGGAGATGTATCAATCTAATCAAG 57.141 37.037 0.00 0.00 37.03 3.02
3859 3871 8.313292 AGAGGAGATGTATCAATCTAATCAAGC 58.687 37.037 0.00 0.00 37.03 4.01
3860 3872 7.971201 AGGAGATGTATCAATCTAATCAAGCA 58.029 34.615 0.00 0.00 37.03 3.91
3861 3873 8.435187 AGGAGATGTATCAATCTAATCAAGCAA 58.565 33.333 0.00 0.00 37.03 3.91
3862 3874 8.719648 GGAGATGTATCAATCTAATCAAGCAAG 58.280 37.037 0.00 0.00 37.03 4.01
3863 3875 9.486497 GAGATGTATCAATCTAATCAAGCAAGA 57.514 33.333 0.00 0.00 37.03 3.02
3864 3876 9.842775 AGATGTATCAATCTAATCAAGCAAGAA 57.157 29.630 0.00 0.00 35.09 2.52
3866 3878 7.923888 TGTATCAATCTAATCAAGCAAGAAGC 58.076 34.615 0.00 0.00 46.19 3.86
3881 3893 5.008811 AGCAAGAAGCAATCAATATCTGCTC 59.991 40.000 0.00 0.00 45.50 4.26
3882 3894 5.441543 CAAGAAGCAATCAATATCTGCTCG 58.558 41.667 0.00 0.00 45.50 5.03
3883 3895 4.063689 AGAAGCAATCAATATCTGCTCGG 58.936 43.478 0.00 0.00 45.50 4.63
3884 3896 2.149578 AGCAATCAATATCTGCTCGGC 58.850 47.619 0.00 0.00 42.73 5.54
3885 3897 2.149578 GCAATCAATATCTGCTCGGCT 58.850 47.619 0.00 0.00 33.20 5.52
3886 3898 2.551459 GCAATCAATATCTGCTCGGCTT 59.449 45.455 0.00 0.00 33.20 4.35
3887 3899 3.364764 GCAATCAATATCTGCTCGGCTTC 60.365 47.826 0.00 0.00 33.20 3.86
3888 3900 2.533266 TCAATATCTGCTCGGCTTCC 57.467 50.000 0.00 0.00 0.00 3.46
3889 3901 1.070758 TCAATATCTGCTCGGCTTCCC 59.929 52.381 0.00 0.00 0.00 3.97
3890 3902 1.071385 CAATATCTGCTCGGCTTCCCT 59.929 52.381 0.00 0.00 0.00 4.20
3891 3903 1.428869 ATATCTGCTCGGCTTCCCTT 58.571 50.000 0.00 0.00 0.00 3.95
3892 3904 2.082140 TATCTGCTCGGCTTCCCTTA 57.918 50.000 0.00 0.00 0.00 2.69
3893 3905 0.755686 ATCTGCTCGGCTTCCCTTAG 59.244 55.000 0.00 0.00 0.00 2.18
3894 3906 1.144936 CTGCTCGGCTTCCCTTAGG 59.855 63.158 0.00 0.00 0.00 2.69
3895 3907 2.317149 CTGCTCGGCTTCCCTTAGGG 62.317 65.000 11.94 11.94 46.11 3.53
3905 3917 2.282446 CCTTAGGGAGCCGGGAGA 59.718 66.667 2.18 0.00 33.58 3.71
3906 3918 2.134933 CCTTAGGGAGCCGGGAGAC 61.135 68.421 2.18 0.00 33.58 3.36
3921 3933 2.377073 GGAGACCTAAACTCTAGCCGT 58.623 52.381 0.00 0.00 35.10 5.68
3922 3934 2.358582 GGAGACCTAAACTCTAGCCGTC 59.641 54.545 0.00 0.00 35.10 4.79
3923 3935 3.281158 GAGACCTAAACTCTAGCCGTCT 58.719 50.000 0.00 0.00 0.00 4.18
3924 3936 3.281158 AGACCTAAACTCTAGCCGTCTC 58.719 50.000 0.00 0.00 0.00 3.36
3925 3937 3.054213 AGACCTAAACTCTAGCCGTCTCT 60.054 47.826 0.00 0.00 0.00 3.10
3926 3938 3.695556 GACCTAAACTCTAGCCGTCTCTT 59.304 47.826 0.00 0.00 0.00 2.85
3927 3939 3.444388 ACCTAAACTCTAGCCGTCTCTTG 59.556 47.826 0.00 0.00 0.00 3.02
3928 3940 3.444388 CCTAAACTCTAGCCGTCTCTTGT 59.556 47.826 0.00 0.00 0.00 3.16
3929 3941 3.305398 AAACTCTAGCCGTCTCTTGTG 57.695 47.619 0.00 0.00 0.00 3.33
3930 3942 1.912417 ACTCTAGCCGTCTCTTGTGT 58.088 50.000 0.00 0.00 0.00 3.72
3931 3943 1.813786 ACTCTAGCCGTCTCTTGTGTC 59.186 52.381 0.00 0.00 0.00 3.67
3932 3944 1.133407 CTCTAGCCGTCTCTTGTGTCC 59.867 57.143 0.00 0.00 0.00 4.02
3933 3945 0.179161 CTAGCCGTCTCTTGTGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
3934 3946 2.209064 TAGCCGTCTCTTGTGTCCGC 62.209 60.000 0.00 0.00 0.00 5.54
3935 3947 2.432628 CCGTCTCTTGTGTCCGCC 60.433 66.667 0.00 0.00 0.00 6.13
3936 3948 2.805353 CGTCTCTTGTGTCCGCCG 60.805 66.667 0.00 0.00 0.00 6.46
3937 3949 3.112709 GTCTCTTGTGTCCGCCGC 61.113 66.667 0.00 0.00 0.00 6.53
3938 3950 4.373116 TCTCTTGTGTCCGCCGCC 62.373 66.667 0.00 0.00 0.00 6.13
3995 4007 4.812476 CCGCGCAATCTCCACCGA 62.812 66.667 8.75 0.00 0.00 4.69
3996 4008 3.554692 CGCGCAATCTCCACCGAC 61.555 66.667 8.75 0.00 0.00 4.79
3997 4009 3.195698 GCGCAATCTCCACCGACC 61.196 66.667 0.30 0.00 0.00 4.79
3998 4010 2.579201 CGCAATCTCCACCGACCT 59.421 61.111 0.00 0.00 0.00 3.85
3999 4011 1.519455 CGCAATCTCCACCGACCTC 60.519 63.158 0.00 0.00 0.00 3.85
4000 4012 1.153349 GCAATCTCCACCGACCTCC 60.153 63.158 0.00 0.00 0.00 4.30
4001 4013 1.617947 GCAATCTCCACCGACCTCCT 61.618 60.000 0.00 0.00 0.00 3.69
4002 4014 0.461961 CAATCTCCACCGACCTCCTC 59.538 60.000 0.00 0.00 0.00 3.71
4003 4015 0.688087 AATCTCCACCGACCTCCTCC 60.688 60.000 0.00 0.00 0.00 4.30
4004 4016 2.591193 ATCTCCACCGACCTCCTCCC 62.591 65.000 0.00 0.00 0.00 4.30
4005 4017 3.273654 TCCACCGACCTCCTCCCT 61.274 66.667 0.00 0.00 0.00 4.20
4006 4018 2.760385 CCACCGACCTCCTCCCTC 60.760 72.222 0.00 0.00 0.00 4.30
4007 4019 2.760385 CACCGACCTCCTCCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
4008 4020 2.947785 ACCGACCTCCTCCCTCCT 60.948 66.667 0.00 0.00 0.00 3.69
4009 4021 2.364961 CCGACCTCCTCCCTCCTT 59.635 66.667 0.00 0.00 0.00 3.36
4010 4022 1.306226 CCGACCTCCTCCCTCCTTT 60.306 63.158 0.00 0.00 0.00 3.11
4011 4023 1.331399 CCGACCTCCTCCCTCCTTTC 61.331 65.000 0.00 0.00 0.00 2.62
4012 4024 1.331399 CGACCTCCTCCCTCCTTTCC 61.331 65.000 0.00 0.00 0.00 3.13
4013 4025 0.043485 GACCTCCTCCCTCCTTTCCT 59.957 60.000 0.00 0.00 0.00 3.36
4014 4026 0.498685 ACCTCCTCCCTCCTTTCCTT 59.501 55.000 0.00 0.00 0.00 3.36
4015 4027 1.728701 ACCTCCTCCCTCCTTTCCTTA 59.271 52.381 0.00 0.00 0.00 2.69
4016 4028 2.322543 ACCTCCTCCCTCCTTTCCTTAT 59.677 50.000 0.00 0.00 0.00 1.73
4017 4029 3.540687 ACCTCCTCCCTCCTTTCCTTATA 59.459 47.826 0.00 0.00 0.00 0.98
4018 4030 4.164204 CCTCCTCCCTCCTTTCCTTATAG 58.836 52.174 0.00 0.00 0.00 1.31
4019 4031 4.164204 CTCCTCCCTCCTTTCCTTATAGG 58.836 52.174 0.00 0.00 36.46 2.57
4020 4032 2.640332 CCTCCCTCCTTTCCTTATAGGC 59.360 54.545 0.00 0.00 34.61 3.93
4021 4033 3.592865 CTCCCTCCTTTCCTTATAGGCT 58.407 50.000 0.00 0.00 34.61 4.58
4022 4034 4.450861 CCTCCCTCCTTTCCTTATAGGCTA 60.451 50.000 0.00 0.00 34.61 3.93
4023 4035 4.490706 TCCCTCCTTTCCTTATAGGCTAC 58.509 47.826 0.00 0.00 34.61 3.58
4024 4036 3.258622 CCCTCCTTTCCTTATAGGCTACG 59.741 52.174 0.00 0.00 34.61 3.51
4025 4037 3.306156 CCTCCTTTCCTTATAGGCTACGC 60.306 52.174 0.00 0.00 34.61 4.42
4035 4047 3.130227 GGCTACGCCCTAGACTGG 58.870 66.667 0.00 0.00 44.06 4.00
4045 4057 3.621682 CCCTAGACTGGGTAGAATCCT 57.378 52.381 3.91 0.00 42.25 3.24
4046 4058 4.743705 CCCTAGACTGGGTAGAATCCTA 57.256 50.000 3.91 0.00 42.25 2.94
4047 4059 5.076057 CCCTAGACTGGGTAGAATCCTAA 57.924 47.826 3.91 0.00 42.25 2.69
4048 4060 5.656420 CCCTAGACTGGGTAGAATCCTAAT 58.344 45.833 3.91 0.00 42.25 1.73
4049 4061 6.085416 CCCTAGACTGGGTAGAATCCTAATT 58.915 44.000 3.91 0.00 42.25 1.40
4050 4062 6.559157 CCCTAGACTGGGTAGAATCCTAATTT 59.441 42.308 3.91 0.00 42.25 1.82
4051 4063 7.256368 CCCTAGACTGGGTAGAATCCTAATTTC 60.256 44.444 3.91 0.00 42.25 2.17
4052 4064 7.511028 CCTAGACTGGGTAGAATCCTAATTTCT 59.489 40.741 0.00 0.00 37.25 2.52
4053 4065 9.589461 CTAGACTGGGTAGAATCCTAATTTCTA 57.411 37.037 0.00 0.00 35.19 2.10
4076 4088 5.824904 CCAATTTGGTATCCAGAGACTTG 57.175 43.478 7.31 0.00 33.81 3.16
4077 4089 4.641989 CCAATTTGGTATCCAGAGACTTGG 59.358 45.833 7.31 0.00 33.81 3.61
4078 4090 4.510167 ATTTGGTATCCAGAGACTTGGG 57.490 45.455 4.49 0.00 38.81 4.12
4079 4091 2.642171 TGGTATCCAGAGACTTGGGT 57.358 50.000 4.49 0.80 38.81 4.51
4080 4092 2.467880 TGGTATCCAGAGACTTGGGTC 58.532 52.381 4.49 0.00 42.41 4.46
4081 4093 1.763545 GGTATCCAGAGACTTGGGTCC 59.236 57.143 4.49 0.00 43.05 4.46
4082 4094 1.409427 GTATCCAGAGACTTGGGTCCG 59.591 57.143 4.49 0.00 43.05 4.79
4083 4095 0.041238 ATCCAGAGACTTGGGTCCGA 59.959 55.000 4.49 0.00 43.05 4.55
4084 4096 0.041238 TCCAGAGACTTGGGTCCGAT 59.959 55.000 4.49 0.00 43.05 4.18
4085 4097 0.461961 CCAGAGACTTGGGTCCGATC 59.538 60.000 0.00 0.00 43.05 3.69
4086 4098 1.186200 CAGAGACTTGGGTCCGATCA 58.814 55.000 0.00 0.00 43.05 2.92
4087 4099 1.759445 CAGAGACTTGGGTCCGATCAT 59.241 52.381 0.00 0.00 43.05 2.45
4088 4100 1.759445 AGAGACTTGGGTCCGATCATG 59.241 52.381 0.00 0.00 43.05 3.07
4089 4101 1.482593 GAGACTTGGGTCCGATCATGT 59.517 52.381 0.00 0.00 43.05 3.21
4090 4102 1.482593 AGACTTGGGTCCGATCATGTC 59.517 52.381 0.00 10.24 43.05 3.06
4091 4103 1.482593 GACTTGGGTCCGATCATGTCT 59.517 52.381 0.00 0.00 36.07 3.41
4092 4104 1.909302 ACTTGGGTCCGATCATGTCTT 59.091 47.619 0.00 0.00 0.00 3.01
4093 4105 2.093447 ACTTGGGTCCGATCATGTCTTC 60.093 50.000 0.00 0.00 0.00 2.87
4094 4106 0.459899 TGGGTCCGATCATGTCTTCG 59.540 55.000 7.99 7.99 35.19 3.79
4095 4107 0.460311 GGGTCCGATCATGTCTTCGT 59.540 55.000 12.13 0.00 33.60 3.85
4096 4108 1.536284 GGGTCCGATCATGTCTTCGTC 60.536 57.143 12.13 6.88 33.60 4.20
4097 4109 1.134367 GGTCCGATCATGTCTTCGTCA 59.866 52.381 12.13 0.18 33.60 4.35
4098 4110 2.416836 GGTCCGATCATGTCTTCGTCAA 60.417 50.000 12.13 0.00 33.60 3.18
4099 4111 2.599082 GTCCGATCATGTCTTCGTCAAC 59.401 50.000 12.13 6.17 33.60 3.18
4100 4112 2.230266 TCCGATCATGTCTTCGTCAACA 59.770 45.455 12.13 0.00 33.60 3.33
4101 4113 2.345641 CCGATCATGTCTTCGTCAACAC 59.654 50.000 12.13 0.00 33.60 3.32
4102 4114 2.345641 CGATCATGTCTTCGTCAACACC 59.654 50.000 0.00 0.00 0.00 4.16
4103 4115 2.900716 TCATGTCTTCGTCAACACCA 57.099 45.000 0.00 0.00 0.00 4.17
4104 4116 3.401033 TCATGTCTTCGTCAACACCAT 57.599 42.857 0.00 0.00 0.00 3.55
4105 4117 3.325870 TCATGTCTTCGTCAACACCATC 58.674 45.455 0.00 0.00 0.00 3.51
4106 4118 2.900716 TGTCTTCGTCAACACCATCA 57.099 45.000 0.00 0.00 0.00 3.07
4107 4119 2.479837 TGTCTTCGTCAACACCATCAC 58.520 47.619 0.00 0.00 0.00 3.06
4108 4120 1.798813 GTCTTCGTCAACACCATCACC 59.201 52.381 0.00 0.00 0.00 4.02
4109 4121 0.790207 CTTCGTCAACACCATCACCG 59.210 55.000 0.00 0.00 0.00 4.94
4110 4122 1.225376 TTCGTCAACACCATCACCGC 61.225 55.000 0.00 0.00 0.00 5.68
4111 4123 2.677003 CGTCAACACCATCACCGCC 61.677 63.158 0.00 0.00 0.00 6.13
4112 4124 2.358125 TCAACACCATCACCGCCG 60.358 61.111 0.00 0.00 0.00 6.46
4113 4125 4.101790 CAACACCATCACCGCCGC 62.102 66.667 0.00 0.00 0.00 6.53
4114 4126 4.329545 AACACCATCACCGCCGCT 62.330 61.111 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 161 0.320374 TGAAGCAAGGACTGTACCCG 59.680 55.000 0.00 0.00 0.00 5.28
417 418 5.128827 TGAATCTAGAAGGGTAAGATTGCGT 59.871 40.000 0.00 0.00 39.46 5.24
564 565 3.332485 TGTAAGACAATAGGCTTTGGGGT 59.668 43.478 0.00 0.00 0.00 4.95
708 710 0.322997 CTCCTCCCACGAGACAGACT 60.323 60.000 0.00 0.00 38.52 3.24
737 739 7.475137 AATTGGTTATTCAAAAATCCTCCGA 57.525 32.000 0.00 0.00 0.00 4.55
753 755 3.366476 CCGTGCCGATTTTGAATTGGTTA 60.366 43.478 8.37 0.00 0.00 2.85
908 912 2.498078 GGGGGTGTGTCTTGAAACAAAA 59.502 45.455 0.00 0.00 0.00 2.44
909 913 2.104170 GGGGGTGTGTCTTGAAACAAA 58.896 47.619 0.00 0.00 0.00 2.83
910 914 1.006043 TGGGGGTGTGTCTTGAAACAA 59.994 47.619 0.00 0.00 0.00 2.83
911 915 0.626382 TGGGGGTGTGTCTTGAAACA 59.374 50.000 0.00 0.00 0.00 2.83
912 916 1.029681 GTGGGGGTGTGTCTTGAAAC 58.970 55.000 0.00 0.00 0.00 2.78
937 941 2.282462 AGCTTTGACCGCCTTGGG 60.282 61.111 0.00 0.00 44.64 4.12
947 951 2.228822 GAGCGAAAAATGGGAGCTTTGA 59.771 45.455 0.00 0.00 38.39 2.69
956 960 0.811281 GGTGGGAGAGCGAAAAATGG 59.189 55.000 0.00 0.00 0.00 3.16
1325 1329 2.413351 CGGCGATGTCGAGATGGT 59.587 61.111 0.00 0.00 43.02 3.55
1390 1394 2.603560 CGAGGTAGATGGAGTTTTTCGC 59.396 50.000 0.00 0.00 0.00 4.70
1473 1477 3.682292 GACCCACTGGCCGATGGAC 62.682 68.421 23.57 14.18 38.34 4.02
1584 1588 1.667724 CAGCATAAGACGCCAAAGGAG 59.332 52.381 0.00 0.00 0.00 3.69
1602 1606 2.538437 CTCTCAGCGAAAGGATCACAG 58.462 52.381 0.00 0.00 0.00 3.66
1616 1620 0.972134 TGTCAGAACAGGGCTCTCAG 59.028 55.000 0.00 0.00 0.00 3.35
1665 1669 1.586422 GCTGATGCAATTCTAGCGGA 58.414 50.000 0.00 0.00 39.41 5.54
1684 1688 7.651808 AGACACCAAGTTCTTGATAATTGTTG 58.348 34.615 13.29 0.00 0.00 3.33
1702 1706 1.293179 CACTGATGCCGAGACACCA 59.707 57.895 0.00 0.00 0.00 4.17
1768 1772 5.046878 ACACAAATGACCATGCTTTGATGAT 60.047 36.000 12.35 0.00 34.69 2.45
1770 1774 4.562082 ACACAAATGACCATGCTTTGATG 58.438 39.130 12.35 9.87 34.69 3.07
1791 1795 0.805322 CAGCTGGCTCGTCATCAGAC 60.805 60.000 5.57 0.00 41.46 3.51
1792 1796 1.514553 CAGCTGGCTCGTCATCAGA 59.485 57.895 5.57 0.00 0.00 3.27
1793 1797 1.521010 CCAGCTGGCTCGTCATCAG 60.521 63.158 22.33 0.00 0.00 2.90
1794 1798 1.332889 ATCCAGCTGGCTCGTCATCA 61.333 55.000 28.91 7.75 34.44 3.07
1795 1799 0.879400 CATCCAGCTGGCTCGTCATC 60.879 60.000 28.91 0.00 34.44 2.92
1796 1800 1.145598 CATCCAGCTGGCTCGTCAT 59.854 57.895 28.91 12.34 34.44 3.06
1899 1906 0.616111 AGTCTGGGGCTACTGGACTG 60.616 60.000 0.00 0.00 36.15 3.51
1920 1927 4.639310 ACAGATCCTTTAAGCAAGCAGATG 59.361 41.667 0.00 0.00 0.00 2.90
1921 1928 4.853007 ACAGATCCTTTAAGCAAGCAGAT 58.147 39.130 0.00 0.00 0.00 2.90
1927 1934 7.255590 CCAGAAAAGAACAGATCCTTTAAGCAA 60.256 37.037 0.00 0.00 32.81 3.91
1941 1948 3.662759 AAGTCCACCCAGAAAAGAACA 57.337 42.857 0.00 0.00 0.00 3.18
1953 1960 3.062122 TGTCCCGATTTTAAGTCCACC 57.938 47.619 0.00 0.00 0.00 4.61
1984 1991 1.379309 GGGTGGGCAGCCGATAAAA 60.379 57.895 5.00 0.00 39.39 1.52
2010 2020 3.675619 AACGCCCGTAGCACCATCC 62.676 63.158 0.00 0.00 44.04 3.51
2102 2112 2.926200 CGCATCTCGTCTTTCAGTTGAT 59.074 45.455 0.00 0.00 0.00 2.57
2117 2127 0.678395 AGATCGCTCCAATCGCATCT 59.322 50.000 0.00 0.00 0.00 2.90
2155 2165 4.339247 GCATGTATTGCCATAAACCAGACT 59.661 41.667 0.00 0.00 46.15 3.24
2180 2190 3.536956 ACTTCGTTGTCCTGTTTCTCA 57.463 42.857 0.00 0.00 0.00 3.27
2184 2194 4.448210 ACATGTACTTCGTTGTCCTGTTT 58.552 39.130 0.00 0.00 0.00 2.83
2272 2282 7.816031 CACAAAATAGACCTTCTTGATTGCAAT 59.184 33.333 12.83 12.83 32.68 3.56
2273 2283 7.014134 TCACAAAATAGACCTTCTTGATTGCAA 59.986 33.333 0.00 0.00 0.00 4.08
2332 2342 1.492176 ACCATGGCCAAGATCAGGTAG 59.508 52.381 10.96 0.00 0.00 3.18
2367 2377 2.032030 GTCCACGACAAGACCAACATTG 60.032 50.000 0.00 0.00 32.09 2.82
2404 2414 1.859427 CGCACAAGCTCAGCAACCAT 61.859 55.000 0.00 0.00 39.10 3.55
2477 2487 2.838202 TCCTTATCAGTCCACTTGTCCC 59.162 50.000 0.00 0.00 0.00 4.46
2683 2693 6.127026 ACCAGCCTACTCTCTACAATTAAAGG 60.127 42.308 0.00 0.00 0.00 3.11
2687 2697 5.516044 TGACCAGCCTACTCTCTACAATTA 58.484 41.667 0.00 0.00 0.00 1.40
2712 2722 5.160607 ACTGTAACTTGCCACAGCTAATA 57.839 39.130 1.78 0.00 44.89 0.98
2724 2734 3.868077 GGAGCTCAGCATACTGTAACTTG 59.132 47.826 17.19 0.00 44.77 3.16
2731 2741 1.415289 TCCATGGAGCTCAGCATACTG 59.585 52.381 17.19 0.90 45.95 2.74
2821 2831 6.382570 ACCTCAGTTAGCTTCAGATCATACTT 59.617 38.462 0.00 0.00 0.00 2.24
2836 2846 6.472887 TCTTTTTGGACCATACCTCAGTTAG 58.527 40.000 0.00 0.00 0.00 2.34
3074 3084 0.482446 TCTTGGGAACAGGCCAATGT 59.518 50.000 5.01 0.00 44.54 2.71
3127 3137 5.672503 AGCTACTCGTCTGAAGACAGTATA 58.327 41.667 10.88 0.34 44.99 1.47
3128 3138 4.519213 AGCTACTCGTCTGAAGACAGTAT 58.481 43.478 10.88 2.36 44.99 2.12
3149 3159 3.409570 CATAGATGCCCAGGAACATGAG 58.590 50.000 0.00 0.00 0.00 2.90
3200 3210 5.530915 CGGTTCAGGATAGAAAAATGCCATA 59.469 40.000 0.00 0.00 0.00 2.74
3207 3217 7.227910 GGCATAATACGGTTCAGGATAGAAAAA 59.772 37.037 0.00 0.00 0.00 1.94
3328 3338 6.667848 CCATGTATATCCACCTCTACCATACA 59.332 42.308 0.00 0.00 33.38 2.29
3329 3339 6.407074 GCCATGTATATCCACCTCTACCATAC 60.407 46.154 0.00 0.00 0.00 2.39
3401 3411 2.579201 AGCTCACGCTGCGGTTAT 59.421 55.556 26.95 1.35 46.86 1.89
3461 3471 5.280945 CACCTGAAATTTGGTTGTGTACTG 58.719 41.667 0.00 0.00 33.75 2.74
3554 3566 1.001706 GGGAGCGTTTTTCCACAGTTC 60.002 52.381 0.00 0.00 36.40 3.01
3558 3570 1.770294 AAAGGGAGCGTTTTTCCACA 58.230 45.000 0.00 0.00 36.40 4.17
3585 3597 2.232208 GCTGAATTTCTGGGAAGGTTGG 59.768 50.000 5.57 0.00 0.00 3.77
3636 3648 6.538021 GCAAGAGATCACACAGACATTCTAAT 59.462 38.462 0.00 0.00 0.00 1.73
3670 3682 4.101448 ACGCTGCCAGGGATGGTC 62.101 66.667 16.43 0.00 31.91 4.02
3696 3708 1.571919 CCGGTCATAACACTAGCTGC 58.428 55.000 0.00 0.00 0.00 5.25
3706 3718 2.038863 ATCCCCTATGCCGGTCATAA 57.961 50.000 16.10 5.62 37.22 1.90
3707 3719 2.038863 AATCCCCTATGCCGGTCATA 57.961 50.000 15.01 15.01 36.63 2.15
3708 3720 1.909302 CTAATCCCCTATGCCGGTCAT 59.091 52.381 14.43 14.43 39.17 3.06
3709 3721 1.348064 CTAATCCCCTATGCCGGTCA 58.652 55.000 1.90 1.38 0.00 4.02
3710 3722 0.036294 GCTAATCCCCTATGCCGGTC 60.036 60.000 1.90 0.00 0.00 4.79
3711 3723 1.489560 GGCTAATCCCCTATGCCGGT 61.490 60.000 1.90 0.00 33.96 5.28
3712 3724 1.299976 GGCTAATCCCCTATGCCGG 59.700 63.158 0.00 0.00 33.96 6.13
3736 3748 6.303839 TGATTAAGATACTTGGGCCATAACC 58.696 40.000 7.26 0.00 0.00 2.85
3737 3749 6.431234 CCTGATTAAGATACTTGGGCCATAAC 59.569 42.308 7.26 0.00 0.00 1.89
3738 3750 6.467194 CCCTGATTAAGATACTTGGGCCATAA 60.467 42.308 7.26 0.76 0.00 1.90
3739 3751 5.014123 CCCTGATTAAGATACTTGGGCCATA 59.986 44.000 7.26 0.00 0.00 2.74
3740 3752 4.202609 CCCTGATTAAGATACTTGGGCCAT 60.203 45.833 7.26 0.00 0.00 4.40
3741 3753 3.138283 CCCTGATTAAGATACTTGGGCCA 59.862 47.826 0.00 0.00 0.00 5.36
3742 3754 3.498661 CCCCTGATTAAGATACTTGGGCC 60.499 52.174 0.00 0.00 32.48 5.80
3743 3755 3.756117 CCCCTGATTAAGATACTTGGGC 58.244 50.000 0.00 0.00 32.48 5.36
3744 3756 3.395941 AGCCCCTGATTAAGATACTTGGG 59.604 47.826 0.00 0.00 0.00 4.12
3745 3757 4.713792 AGCCCCTGATTAAGATACTTGG 57.286 45.455 0.00 0.00 0.00 3.61
3746 3758 6.831976 ACTAAGCCCCTGATTAAGATACTTG 58.168 40.000 0.00 0.00 0.00 3.16
3747 3759 7.127339 TGAACTAAGCCCCTGATTAAGATACTT 59.873 37.037 0.00 0.00 0.00 2.24
3748 3760 6.615726 TGAACTAAGCCCCTGATTAAGATACT 59.384 38.462 0.00 0.00 0.00 2.12
3749 3761 6.827727 TGAACTAAGCCCCTGATTAAGATAC 58.172 40.000 0.00 0.00 0.00 2.24
3750 3762 7.446106 TTGAACTAAGCCCCTGATTAAGATA 57.554 36.000 0.00 0.00 0.00 1.98
3751 3763 5.975988 TGAACTAAGCCCCTGATTAAGAT 57.024 39.130 0.00 0.00 0.00 2.40
3752 3764 5.772393 TTGAACTAAGCCCCTGATTAAGA 57.228 39.130 0.00 0.00 0.00 2.10
3753 3765 8.697507 ATAATTGAACTAAGCCCCTGATTAAG 57.302 34.615 0.00 0.00 0.00 1.85
3754 3766 8.502738 AGATAATTGAACTAAGCCCCTGATTAA 58.497 33.333 0.00 0.00 0.00 1.40
3755 3767 8.045720 AGATAATTGAACTAAGCCCCTGATTA 57.954 34.615 0.00 0.00 0.00 1.75
3756 3768 6.915786 AGATAATTGAACTAAGCCCCTGATT 58.084 36.000 0.00 0.00 0.00 2.57
3757 3769 6.521527 AGATAATTGAACTAAGCCCCTGAT 57.478 37.500 0.00 0.00 0.00 2.90
3758 3770 5.975988 AGATAATTGAACTAAGCCCCTGA 57.024 39.130 0.00 0.00 0.00 3.86
3759 3771 7.118390 CGATAAGATAATTGAACTAAGCCCCTG 59.882 40.741 0.00 0.00 0.00 4.45
3760 3772 7.162082 CGATAAGATAATTGAACTAAGCCCCT 58.838 38.462 0.00 0.00 0.00 4.79
3761 3773 6.935208 ACGATAAGATAATTGAACTAAGCCCC 59.065 38.462 0.00 0.00 0.00 5.80
3762 3774 7.964604 ACGATAAGATAATTGAACTAAGCCC 57.035 36.000 0.00 0.00 0.00 5.19
3782 3794 9.245962 CTCCTAAACAAACGATTCTAATACGAT 57.754 33.333 0.00 0.00 0.00 3.73
3783 3795 8.246180 ACTCCTAAACAAACGATTCTAATACGA 58.754 33.333 0.00 0.00 0.00 3.43
3784 3796 8.403606 ACTCCTAAACAAACGATTCTAATACG 57.596 34.615 0.00 0.00 0.00 3.06
3785 3797 9.362539 TGACTCCTAAACAAACGATTCTAATAC 57.637 33.333 0.00 0.00 0.00 1.89
3786 3798 9.932207 TTGACTCCTAAACAAACGATTCTAATA 57.068 29.630 0.00 0.00 0.00 0.98
3787 3799 8.842358 TTGACTCCTAAACAAACGATTCTAAT 57.158 30.769 0.00 0.00 0.00 1.73
3788 3800 7.929785 ACTTGACTCCTAAACAAACGATTCTAA 59.070 33.333 0.00 0.00 0.00 2.10
3789 3801 7.439381 ACTTGACTCCTAAACAAACGATTCTA 58.561 34.615 0.00 0.00 0.00 2.10
3790 3802 6.289064 ACTTGACTCCTAAACAAACGATTCT 58.711 36.000 0.00 0.00 0.00 2.40
3791 3803 6.541111 ACTTGACTCCTAAACAAACGATTC 57.459 37.500 0.00 0.00 0.00 2.52
3792 3804 8.340443 GTTTACTTGACTCCTAAACAAACGATT 58.660 33.333 0.00 0.00 32.75 3.34
3793 3805 7.041576 GGTTTACTTGACTCCTAAACAAACGAT 60.042 37.037 0.00 0.00 33.71 3.73
3794 3806 6.258507 GGTTTACTTGACTCCTAAACAAACGA 59.741 38.462 0.00 0.00 33.71 3.85
3795 3807 6.259387 AGGTTTACTTGACTCCTAAACAAACG 59.741 38.462 0.00 0.00 33.71 3.60
3796 3808 7.498239 AGAGGTTTACTTGACTCCTAAACAAAC 59.502 37.037 0.00 0.00 33.71 2.93
3797 3809 7.571025 AGAGGTTTACTTGACTCCTAAACAAA 58.429 34.615 0.00 0.00 33.71 2.83
3798 3810 7.070821 AGAGAGGTTTACTTGACTCCTAAACAA 59.929 37.037 0.00 0.00 33.71 2.83
3799 3811 6.553852 AGAGAGGTTTACTTGACTCCTAAACA 59.446 38.462 0.00 0.00 33.71 2.83
3800 3812 6.995364 AGAGAGGTTTACTTGACTCCTAAAC 58.005 40.000 0.00 0.00 32.03 2.01
3801 3813 8.896722 ATAGAGAGGTTTACTTGACTCCTAAA 57.103 34.615 0.00 0.00 0.00 1.85
3829 3841 8.971032 ATTAGATTGATACATCTCCTCTCCTT 57.029 34.615 0.00 0.00 0.00 3.36
3830 3842 8.176105 TGATTAGATTGATACATCTCCTCTCCT 58.824 37.037 0.00 0.00 0.00 3.69
3831 3843 8.359875 TGATTAGATTGATACATCTCCTCTCC 57.640 38.462 0.00 0.00 0.00 3.71
3832 3844 9.859427 CTTGATTAGATTGATACATCTCCTCTC 57.141 37.037 0.00 0.00 0.00 3.20
3833 3845 8.313292 GCTTGATTAGATTGATACATCTCCTCT 58.687 37.037 0.00 0.00 0.00 3.69
3834 3846 8.093307 TGCTTGATTAGATTGATACATCTCCTC 58.907 37.037 0.00 0.00 0.00 3.71
3835 3847 7.971201 TGCTTGATTAGATTGATACATCTCCT 58.029 34.615 0.00 0.00 0.00 3.69
3836 3848 8.613060 TTGCTTGATTAGATTGATACATCTCC 57.387 34.615 0.00 0.00 0.00 3.71
3837 3849 9.486497 TCTTGCTTGATTAGATTGATACATCTC 57.514 33.333 0.00 0.00 0.00 2.75
3838 3850 9.842775 TTCTTGCTTGATTAGATTGATACATCT 57.157 29.630 0.00 0.00 0.00 2.90
3840 3852 8.566260 GCTTCTTGCTTGATTAGATTGATACAT 58.434 33.333 0.00 0.00 38.95 2.29
3841 3853 7.553760 TGCTTCTTGCTTGATTAGATTGATACA 59.446 33.333 0.00 0.00 43.37 2.29
3842 3854 7.923888 TGCTTCTTGCTTGATTAGATTGATAC 58.076 34.615 0.00 0.00 43.37 2.24
3843 3855 8.510243 TTGCTTCTTGCTTGATTAGATTGATA 57.490 30.769 0.00 0.00 43.37 2.15
3844 3856 7.400599 TTGCTTCTTGCTTGATTAGATTGAT 57.599 32.000 0.00 0.00 43.37 2.57
3845 3857 6.822667 TTGCTTCTTGCTTGATTAGATTGA 57.177 33.333 0.00 0.00 43.37 2.57
3846 3858 7.255569 TGATTGCTTCTTGCTTGATTAGATTG 58.744 34.615 0.00 0.00 43.37 2.67
3847 3859 7.400599 TGATTGCTTCTTGCTTGATTAGATT 57.599 32.000 0.00 0.00 43.37 2.40
3848 3860 7.400599 TTGATTGCTTCTTGCTTGATTAGAT 57.599 32.000 0.00 0.00 43.37 1.98
3849 3861 6.822667 TTGATTGCTTCTTGCTTGATTAGA 57.177 33.333 0.00 0.00 43.37 2.10
3850 3862 9.395707 GATATTGATTGCTTCTTGCTTGATTAG 57.604 33.333 0.00 0.00 43.37 1.73
3851 3863 9.128404 AGATATTGATTGCTTCTTGCTTGATTA 57.872 29.630 0.00 0.00 43.37 1.75
3852 3864 7.921214 CAGATATTGATTGCTTCTTGCTTGATT 59.079 33.333 0.00 0.00 43.37 2.57
3853 3865 7.426410 CAGATATTGATTGCTTCTTGCTTGAT 58.574 34.615 0.00 0.00 43.37 2.57
3854 3866 6.679638 GCAGATATTGATTGCTTCTTGCTTGA 60.680 38.462 0.00 0.00 43.37 3.02
3855 3867 5.459107 GCAGATATTGATTGCTTCTTGCTTG 59.541 40.000 0.00 0.00 43.37 4.01
3856 3868 5.360144 AGCAGATATTGATTGCTTCTTGCTT 59.640 36.000 0.00 0.00 45.28 3.91
3857 3869 4.888239 AGCAGATATTGATTGCTTCTTGCT 59.112 37.500 0.00 0.00 45.28 3.91
3858 3870 5.184340 AGCAGATATTGATTGCTTCTTGC 57.816 39.130 0.00 0.00 45.28 4.01
3865 3877 2.149578 AGCCGAGCAGATATTGATTGC 58.850 47.619 0.00 0.00 38.09 3.56
3866 3878 3.188048 GGAAGCCGAGCAGATATTGATTG 59.812 47.826 0.00 0.00 0.00 2.67
3867 3879 3.406764 GGAAGCCGAGCAGATATTGATT 58.593 45.455 0.00 0.00 0.00 2.57
3868 3880 2.289945 GGGAAGCCGAGCAGATATTGAT 60.290 50.000 0.00 0.00 0.00 2.57
3869 3881 1.070758 GGGAAGCCGAGCAGATATTGA 59.929 52.381 0.00 0.00 0.00 2.57
3870 3882 1.071385 AGGGAAGCCGAGCAGATATTG 59.929 52.381 0.00 0.00 0.00 1.90
3871 3883 1.428869 AGGGAAGCCGAGCAGATATT 58.571 50.000 0.00 0.00 0.00 1.28
3872 3884 1.428869 AAGGGAAGCCGAGCAGATAT 58.571 50.000 0.00 0.00 0.00 1.63
3873 3885 1.964223 CTAAGGGAAGCCGAGCAGATA 59.036 52.381 0.00 0.00 0.00 1.98
3874 3886 0.755686 CTAAGGGAAGCCGAGCAGAT 59.244 55.000 0.00 0.00 0.00 2.90
3875 3887 1.330655 CCTAAGGGAAGCCGAGCAGA 61.331 60.000 0.00 0.00 33.58 4.26
3876 3888 1.144936 CCTAAGGGAAGCCGAGCAG 59.855 63.158 0.00 0.00 33.58 4.24
3877 3889 3.309582 CCTAAGGGAAGCCGAGCA 58.690 61.111 0.00 0.00 33.58 4.26
3887 3899 2.844839 CTCCCGGCTCCCTAAGGG 60.845 72.222 0.00 0.00 46.11 3.95
3888 3900 2.134933 GTCTCCCGGCTCCCTAAGG 61.135 68.421 0.00 0.00 0.00 2.69
3889 3901 2.134933 GGTCTCCCGGCTCCCTAAG 61.135 68.421 0.00 0.00 0.00 2.18
3890 3902 1.291459 TAGGTCTCCCGGCTCCCTAA 61.291 60.000 0.00 0.00 35.12 2.69
3891 3903 1.291459 TTAGGTCTCCCGGCTCCCTA 61.291 60.000 0.00 0.00 35.12 3.53
3892 3904 2.177529 TTTAGGTCTCCCGGCTCCCT 62.178 60.000 0.00 0.06 35.12 4.20
3893 3905 1.688187 TTTAGGTCTCCCGGCTCCC 60.688 63.158 0.00 0.00 35.12 4.30
3894 3906 0.976590 AGTTTAGGTCTCCCGGCTCC 60.977 60.000 0.00 0.00 35.12 4.70
3895 3907 0.460722 GAGTTTAGGTCTCCCGGCTC 59.539 60.000 0.00 0.00 35.12 4.70
3896 3908 0.041386 AGAGTTTAGGTCTCCCGGCT 59.959 55.000 0.00 0.00 35.12 5.52
3897 3909 1.682323 CTAGAGTTTAGGTCTCCCGGC 59.318 57.143 0.00 0.00 35.12 6.13
3898 3910 1.682323 GCTAGAGTTTAGGTCTCCCGG 59.318 57.143 0.00 0.00 35.12 5.73
3899 3911 1.682323 GGCTAGAGTTTAGGTCTCCCG 59.318 57.143 0.00 0.00 35.12 5.14
3900 3912 1.682323 CGGCTAGAGTTTAGGTCTCCC 59.318 57.143 0.00 0.00 32.93 4.30
3901 3913 2.358582 GACGGCTAGAGTTTAGGTCTCC 59.641 54.545 0.00 0.00 32.93 3.71
3902 3914 3.281158 AGACGGCTAGAGTTTAGGTCTC 58.719 50.000 0.00 0.00 0.00 3.36
3903 3915 3.054213 AGAGACGGCTAGAGTTTAGGTCT 60.054 47.826 0.00 0.94 36.10 3.85
3904 3916 3.281158 AGAGACGGCTAGAGTTTAGGTC 58.719 50.000 0.00 0.00 0.00 3.85
3905 3917 3.369242 AGAGACGGCTAGAGTTTAGGT 57.631 47.619 0.00 0.00 0.00 3.08
3906 3918 3.444388 ACAAGAGACGGCTAGAGTTTAGG 59.556 47.826 0.00 0.00 0.00 2.69
3907 3919 4.082679 ACACAAGAGACGGCTAGAGTTTAG 60.083 45.833 0.00 0.00 0.00 1.85
3908 3920 3.825014 ACACAAGAGACGGCTAGAGTTTA 59.175 43.478 0.00 0.00 0.00 2.01
3909 3921 2.628657 ACACAAGAGACGGCTAGAGTTT 59.371 45.455 0.00 0.00 0.00 2.66
3910 3922 2.229302 GACACAAGAGACGGCTAGAGTT 59.771 50.000 0.00 0.00 0.00 3.01
3911 3923 1.813786 GACACAAGAGACGGCTAGAGT 59.186 52.381 0.00 0.00 0.00 3.24
3912 3924 1.133407 GGACACAAGAGACGGCTAGAG 59.867 57.143 0.00 0.00 0.00 2.43
3913 3925 1.174783 GGACACAAGAGACGGCTAGA 58.825 55.000 0.00 0.00 0.00 2.43
3914 3926 0.179161 CGGACACAAGAGACGGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
3915 3927 1.880894 CGGACACAAGAGACGGCTA 59.119 57.895 0.00 0.00 0.00 3.93
3916 3928 2.651361 CGGACACAAGAGACGGCT 59.349 61.111 0.00 0.00 0.00 5.52
3917 3929 3.112709 GCGGACACAAGAGACGGC 61.113 66.667 0.00 0.00 0.00 5.68
3918 3930 2.432628 GGCGGACACAAGAGACGG 60.433 66.667 0.00 0.00 0.00 4.79
3919 3931 2.805353 CGGCGGACACAAGAGACG 60.805 66.667 0.00 0.00 0.00 4.18
3920 3932 3.112709 GCGGCGGACACAAGAGAC 61.113 66.667 9.78 0.00 0.00 3.36
3921 3933 4.373116 GGCGGCGGACACAAGAGA 62.373 66.667 9.78 0.00 0.00 3.10
3943 3955 4.680237 TCGTCCTTGCGGCTGGTG 62.680 66.667 0.00 2.08 0.00 4.17
3944 3956 4.681978 GTCGTCCTTGCGGCTGGT 62.682 66.667 0.00 0.00 33.21 4.00
3978 3990 4.812476 TCGGTGGAGATTGCGCGG 62.812 66.667 8.83 0.00 0.00 6.46
3979 3991 3.554692 GTCGGTGGAGATTGCGCG 61.555 66.667 0.00 0.00 0.00 6.86
3980 3992 3.195698 GGTCGGTGGAGATTGCGC 61.196 66.667 0.00 0.00 0.00 6.09
3981 3993 1.519455 GAGGTCGGTGGAGATTGCG 60.519 63.158 0.00 0.00 0.00 4.85
3982 3994 1.153349 GGAGGTCGGTGGAGATTGC 60.153 63.158 0.00 0.00 0.00 3.56
3983 3995 0.461961 GAGGAGGTCGGTGGAGATTG 59.538 60.000 0.00 0.00 0.00 2.67
3984 3996 0.688087 GGAGGAGGTCGGTGGAGATT 60.688 60.000 0.00 0.00 0.00 2.40
3985 3997 1.075896 GGAGGAGGTCGGTGGAGAT 60.076 63.158 0.00 0.00 0.00 2.75
3986 3998 2.359404 GGAGGAGGTCGGTGGAGA 59.641 66.667 0.00 0.00 0.00 3.71
3987 3999 2.760385 GGGAGGAGGTCGGTGGAG 60.760 72.222 0.00 0.00 0.00 3.86
3988 4000 3.273654 AGGGAGGAGGTCGGTGGA 61.274 66.667 0.00 0.00 0.00 4.02
3989 4001 2.760385 GAGGGAGGAGGTCGGTGG 60.760 72.222 0.00 0.00 0.00 4.61
3990 4002 2.760385 GGAGGGAGGAGGTCGGTG 60.760 72.222 0.00 0.00 0.00 4.94
3991 4003 2.108208 AAAGGAGGGAGGAGGTCGGT 62.108 60.000 0.00 0.00 0.00 4.69
3992 4004 1.306226 AAAGGAGGGAGGAGGTCGG 60.306 63.158 0.00 0.00 0.00 4.79
3993 4005 1.331399 GGAAAGGAGGGAGGAGGTCG 61.331 65.000 0.00 0.00 0.00 4.79
3994 4006 0.043485 AGGAAAGGAGGGAGGAGGTC 59.957 60.000 0.00 0.00 0.00 3.85
3995 4007 0.498685 AAGGAAAGGAGGGAGGAGGT 59.501 55.000 0.00 0.00 0.00 3.85
3996 4008 2.570386 TAAGGAAAGGAGGGAGGAGG 57.430 55.000 0.00 0.00 0.00 4.30
3997 4009 4.164204 CCTATAAGGAAAGGAGGGAGGAG 58.836 52.174 0.00 0.00 37.67 3.69
3998 4010 3.697505 GCCTATAAGGAAAGGAGGGAGGA 60.698 52.174 0.00 0.00 37.67 3.71
3999 4011 2.640332 GCCTATAAGGAAAGGAGGGAGG 59.360 54.545 0.00 0.00 37.67 4.30
4000 4012 3.592865 AGCCTATAAGGAAAGGAGGGAG 58.407 50.000 0.00 0.00 37.67 4.30
4001 4013 3.726837 AGCCTATAAGGAAAGGAGGGA 57.273 47.619 0.00 0.00 37.67 4.20
4002 4014 3.258622 CGTAGCCTATAAGGAAAGGAGGG 59.741 52.174 0.00 0.00 37.67 4.30
4003 4015 4.522722 CGTAGCCTATAAGGAAAGGAGG 57.477 50.000 0.00 0.00 37.67 4.30
4026 4038 7.511028 AGAAATTAGGATTCTACCCAGTCTAGG 59.489 40.741 0.00 0.00 35.43 3.02
4027 4039 8.485578 AGAAATTAGGATTCTACCCAGTCTAG 57.514 38.462 0.00 0.00 35.43 2.43
4052 4064 9.437148 CCCAAGTCTCTGGATACCAAATTGGTA 62.437 44.444 25.13 25.13 43.69 3.25
4053 4065 5.807721 CCAAGTCTCTGGATACCAAATTGGT 60.808 44.000 22.30 22.30 45.89 3.67
4054 4066 4.641989 CCAAGTCTCTGGATACCAAATTGG 59.358 45.833 11.02 11.02 40.38 3.16
4055 4067 4.641989 CCCAAGTCTCTGGATACCAAATTG 59.358 45.833 0.00 0.00 38.96 2.32
4056 4068 4.292306 ACCCAAGTCTCTGGATACCAAATT 59.708 41.667 0.00 0.00 38.96 1.82
4057 4069 3.852578 ACCCAAGTCTCTGGATACCAAAT 59.147 43.478 0.00 0.00 38.96 2.32
4058 4070 3.256704 ACCCAAGTCTCTGGATACCAAA 58.743 45.455 0.00 0.00 38.96 3.28
4059 4071 2.838202 GACCCAAGTCTCTGGATACCAA 59.162 50.000 0.00 0.00 40.10 3.67
4060 4072 2.467880 GACCCAAGTCTCTGGATACCA 58.532 52.381 0.00 0.00 40.10 3.25
4061 4073 1.763545 GGACCCAAGTCTCTGGATACC 59.236 57.143 3.43 0.00 43.05 2.73
4062 4074 1.409427 CGGACCCAAGTCTCTGGATAC 59.591 57.143 3.43 0.00 43.05 2.24
4063 4075 1.286849 TCGGACCCAAGTCTCTGGATA 59.713 52.381 3.43 0.00 43.05 2.59
4064 4076 0.041238 TCGGACCCAAGTCTCTGGAT 59.959 55.000 3.43 0.00 43.05 3.41
4065 4077 0.041238 ATCGGACCCAAGTCTCTGGA 59.959 55.000 3.43 0.00 43.05 3.86
4066 4078 0.461961 GATCGGACCCAAGTCTCTGG 59.538 60.000 0.00 0.00 43.05 3.86
4067 4079 1.186200 TGATCGGACCCAAGTCTCTG 58.814 55.000 0.00 0.00 43.05 3.35
4068 4080 1.759445 CATGATCGGACCCAAGTCTCT 59.241 52.381 0.00 0.00 43.05 3.10
4069 4081 1.482593 ACATGATCGGACCCAAGTCTC 59.517 52.381 0.00 0.00 43.05 3.36
4070 4082 1.482593 GACATGATCGGACCCAAGTCT 59.517 52.381 0.00 0.00 43.05 3.24
4071 4083 1.482593 AGACATGATCGGACCCAAGTC 59.517 52.381 0.00 8.59 42.73 3.01
4072 4084 1.573108 AGACATGATCGGACCCAAGT 58.427 50.000 0.00 0.00 0.00 3.16
4073 4085 2.555199 GAAGACATGATCGGACCCAAG 58.445 52.381 0.00 0.00 0.00 3.61
4074 4086 1.134818 CGAAGACATGATCGGACCCAA 60.135 52.381 0.00 0.00 35.49 4.12
4075 4087 0.459899 CGAAGACATGATCGGACCCA 59.540 55.000 0.00 0.00 35.49 4.51
4076 4088 0.460311 ACGAAGACATGATCGGACCC 59.540 55.000 18.95 0.00 43.11 4.46
4077 4089 1.134367 TGACGAAGACATGATCGGACC 59.866 52.381 18.95 11.16 43.11 4.46
4078 4090 2.561733 TGACGAAGACATGATCGGAC 57.438 50.000 18.95 14.17 43.11 4.79
4079 4091 2.230266 TGTTGACGAAGACATGATCGGA 59.770 45.455 18.95 7.37 43.11 4.55
4080 4092 2.345641 GTGTTGACGAAGACATGATCGG 59.654 50.000 18.95 6.70 43.11 4.18
4081 4093 2.345641 GGTGTTGACGAAGACATGATCG 59.654 50.000 15.19 15.19 44.33 3.69
4082 4094 3.325870 TGGTGTTGACGAAGACATGATC 58.674 45.455 0.00 0.00 29.54 2.92
4083 4095 3.401033 TGGTGTTGACGAAGACATGAT 57.599 42.857 0.00 0.00 29.54 2.45
4084 4096 2.900716 TGGTGTTGACGAAGACATGA 57.099 45.000 0.00 0.00 29.54 3.07
4085 4097 3.066380 TGATGGTGTTGACGAAGACATG 58.934 45.455 0.00 0.00 29.54 3.21
4086 4098 3.067106 GTGATGGTGTTGACGAAGACAT 58.933 45.455 0.00 0.00 29.54 3.06
4087 4099 2.479837 GTGATGGTGTTGACGAAGACA 58.520 47.619 0.00 0.00 0.00 3.41
4088 4100 1.798813 GGTGATGGTGTTGACGAAGAC 59.201 52.381 0.00 0.00 0.00 3.01
4089 4101 1.604438 CGGTGATGGTGTTGACGAAGA 60.604 52.381 0.00 0.00 0.00 2.87
4090 4102 0.790207 CGGTGATGGTGTTGACGAAG 59.210 55.000 0.00 0.00 0.00 3.79
4091 4103 1.225376 GCGGTGATGGTGTTGACGAA 61.225 55.000 0.00 0.00 0.00 3.85
4092 4104 1.666553 GCGGTGATGGTGTTGACGA 60.667 57.895 0.00 0.00 0.00 4.20
4093 4105 2.677003 GGCGGTGATGGTGTTGACG 61.677 63.158 0.00 0.00 0.00 4.35
4094 4106 2.677003 CGGCGGTGATGGTGTTGAC 61.677 63.158 0.00 0.00 0.00 3.18
4095 4107 2.358125 CGGCGGTGATGGTGTTGA 60.358 61.111 0.00 0.00 0.00 3.18
4096 4108 4.101790 GCGGCGGTGATGGTGTTG 62.102 66.667 9.78 0.00 0.00 3.33
4097 4109 4.329545 AGCGGCGGTGATGGTGTT 62.330 61.111 12.25 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.