Multiple sequence alignment - TraesCS7A01G238700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G238700 chr7A 100.000 9813 0 0 1 9813 211714491 211704679 0.000000e+00 18122.0
1 TraesCS7A01G238700 chr7B 96.359 4998 140 17 4791 9755 119207594 119202606 0.000000e+00 8183.0
2 TraesCS7A01G238700 chr7B 94.540 3608 140 28 699 4292 119211434 119207870 0.000000e+00 5518.0
3 TraesCS7A01G238700 chr7B 99.855 690 1 0 1 690 697083527 697082838 0.000000e+00 1269.0
4 TraesCS7A01G238700 chr7B 97.838 185 3 1 4603 4786 119207872 119207688 1.590000e-82 318.0
5 TraesCS7A01G238700 chr7D 95.567 3609 117 12 701 4292 156800840 156797258 0.000000e+00 5738.0
6 TraesCS7A01G238700 chr7D 96.747 2398 58 7 5117 7513 156796608 156794230 0.000000e+00 3978.0
7 TraesCS7A01G238700 chr7D 94.351 2248 86 21 7507 9719 156794036 156791795 0.000000e+00 3410.0
8 TraesCS7A01G238700 chr7D 91.322 242 18 2 4787 5027 156796838 156796599 2.640000e-85 327.0
9 TraesCS7A01G238700 chr7D 83.548 310 44 4 4299 4603 598010076 598009769 5.800000e-72 283.0
10 TraesCS7A01G238700 chr7D 94.444 108 4 2 4603 4709 156797260 156797154 2.190000e-36 165.0
11 TraesCS7A01G238700 chr7D 93.671 79 4 1 4708 4786 156797067 156796990 6.230000e-22 117.0
12 TraesCS7A01G238700 chr6A 83.746 3716 557 36 5130 8814 12389851 12393550 0.000000e+00 3472.0
13 TraesCS7A01G238700 chr6A 83.807 3131 440 40 1001 4092 12385928 12389030 0.000000e+00 2911.0
14 TraesCS7A01G238700 chr6A 89.888 89 5 3 5032 5118 417624648 417624734 2.900000e-20 111.0
15 TraesCS7A01G238700 chr6A 83.516 91 15 0 4299 4389 486826577 486826667 1.760000e-12 86.1
16 TraesCS7A01G238700 chr6B 83.754 3681 557 31 5130 8782 20683965 20687632 0.000000e+00 3446.0
17 TraesCS7A01G238700 chr6B 83.642 3130 450 37 1001 4092 20680043 20683148 0.000000e+00 2887.0
18 TraesCS7A01G238700 chr6D 83.554 3703 568 31 5135 8806 10909804 10913496 0.000000e+00 3426.0
19 TraesCS7A01G238700 chr6D 83.726 3140 434 46 1001 4092 10905872 10908982 0.000000e+00 2896.0
20 TraesCS7A01G238700 chr6D 92.222 90 6 1 5030 5118 126632452 126632363 1.030000e-24 126.0
21 TraesCS7A01G238700 chr5D 81.468 831 112 18 3294 4091 26259961 26260782 2.310000e-180 643.0
22 TraesCS7A01G238700 chr5D 83.673 245 35 5 4364 4606 477021840 477022081 9.920000e-55 226.0
23 TraesCS7A01G238700 chr2B 84.405 622 53 20 1 594 367788417 367787812 1.110000e-158 571.0
24 TraesCS7A01G238700 chr2B 93.590 78 5 0 5030 5107 354079605 354079682 6.230000e-22 117.0
25 TraesCS7A01G238700 chr4B 79.861 720 101 30 1 693 535334727 535334025 4.120000e-133 486.0
26 TraesCS7A01G238700 chr4B 84.649 456 45 13 254 690 566573868 566573419 1.960000e-116 431.0
27 TraesCS7A01G238700 chr3B 84.713 314 44 4 4291 4602 183466119 183466430 2.660000e-80 311.0
28 TraesCS7A01G238700 chr3D 80.255 314 56 6 4299 4609 458611099 458610789 2.130000e-56 231.0
29 TraesCS7A01G238700 chr2D 79.365 315 52 10 4299 4611 41229888 41230191 9.990000e-50 209.0
30 TraesCS7A01G238700 chr2D 88.421 95 4 6 5030 5121 284540667 284540757 3.750000e-19 108.0
31 TraesCS7A01G238700 chr4D 92.135 89 5 1 5030 5118 85340953 85340867 3.720000e-24 124.0
32 TraesCS7A01G238700 chr2A 91.765 85 5 1 5030 5114 362047994 362047912 6.230000e-22 117.0
33 TraesCS7A01G238700 chr2A 89.247 93 7 2 5030 5121 333751394 333751304 8.060000e-21 113.0
34 TraesCS7A01G238700 chr2A 88.636 88 8 1 5030 5117 606520933 606521018 1.350000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G238700 chr7A 211704679 211714491 9812 True 18122.000000 18122 100.000000 1 9813 1 chr7A.!!$R1 9812
1 TraesCS7A01G238700 chr7B 119202606 119211434 8828 True 4673.000000 8183 96.245667 699 9755 3 chr7B.!!$R2 9056
2 TraesCS7A01G238700 chr7B 697082838 697083527 689 True 1269.000000 1269 99.855000 1 690 1 chr7B.!!$R1 689
3 TraesCS7A01G238700 chr7D 156791795 156800840 9045 True 2289.166667 5738 94.350333 701 9719 6 chr7D.!!$R2 9018
4 TraesCS7A01G238700 chr6A 12385928 12393550 7622 False 3191.500000 3472 83.776500 1001 8814 2 chr6A.!!$F3 7813
5 TraesCS7A01G238700 chr6B 20680043 20687632 7589 False 3166.500000 3446 83.698000 1001 8782 2 chr6B.!!$F1 7781
6 TraesCS7A01G238700 chr6D 10905872 10913496 7624 False 3161.000000 3426 83.640000 1001 8806 2 chr6D.!!$F1 7805
7 TraesCS7A01G238700 chr5D 26259961 26260782 821 False 643.000000 643 81.468000 3294 4091 1 chr5D.!!$F1 797
8 TraesCS7A01G238700 chr2B 367787812 367788417 605 True 571.000000 571 84.405000 1 594 1 chr2B.!!$R1 593
9 TraesCS7A01G238700 chr4B 535334025 535334727 702 True 486.000000 486 79.861000 1 693 1 chr4B.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 742 1.518903 GGCCTTATTCGCCATGGCTC 61.519 60.0 33.07 7.26 46.27 4.70 F
1486 1581 0.112606 TCTCAAGGACGACAGGGTCT 59.887 55.0 0.00 0.00 37.12 3.85 F
1597 1701 0.308684 CACGGATTTCCATGATGCGG 59.691 55.0 10.68 0.00 41.76 5.69 F
2373 2494 0.817654 CTGGTACTGATGGTGCGAGA 59.182 55.0 0.00 0.00 38.27 4.04 F
3672 3826 0.462047 GGGGTGTCAATCTACCTGCG 60.462 60.0 0.00 0.00 37.15 5.18 F
4335 4498 0.179034 CCTAGCTTAGCTTGGCCAGG 60.179 60.0 20.40 11.24 43.48 4.45 F
4349 4512 0.180642 GCCAGGTTAACCTAGCCCTC 59.819 60.0 28.62 11.17 46.65 4.30 F
4589 4840 0.182299 GAGCTGCCCTTGCCTAAGAT 59.818 55.0 0.00 0.00 35.92 2.40 F
4590 4841 0.182299 AGCTGCCCTTGCCTAAGATC 59.818 55.0 0.00 0.00 35.92 2.75 F
4592 4843 0.548031 CTGCCCTTGCCTAAGATCCA 59.452 55.0 0.00 0.00 35.92 3.41 F
4600 4851 0.733150 GCCTAAGATCCAAACGCACC 59.267 55.0 0.00 0.00 0.00 5.01 F
4601 4852 1.379527 CCTAAGATCCAAACGCACCC 58.620 55.0 0.00 0.00 0.00 4.61 F
5323 5819 1.472188 ACGAGTACCTGAAGCCTACC 58.528 55.0 0.00 0.00 0.00 3.18 F
5854 6362 2.175715 GGAATTGGCTTGGGAGAGGTAT 59.824 50.0 0.00 0.00 0.00 2.73 F
7133 7641 1.657822 TACTGCGTTGAACTTGTGCA 58.342 45.0 0.00 0.00 0.00 4.57 F
8305 9016 0.699577 TCCCCCACTTCACCAAGGAA 60.700 55.0 0.00 0.00 33.37 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1633 0.179062 GAGCTGGCCGAACATCTGAT 60.179 55.000 0.00 0.00 0.00 2.90 R
2557 2678 0.390492 TCATATGGCAGAGGTCGCAG 59.610 55.000 2.13 0.00 0.00 5.18 R
3429 3566 1.401018 GGCAACACGTCATTAGCCAAC 60.401 52.381 13.26 0.00 41.63 3.77 R
4314 4477 0.253044 TGGCCAAGCTAAGCTAGGTG 59.747 55.000 0.61 0.00 38.25 4.00 R
4478 4729 0.249447 AACCGCCAGAAAAAGCTTGC 60.249 50.000 0.00 0.00 0.00 4.01 R
5881 6389 0.673985 TGGGATAACGGATCAGCTCG 59.326 55.000 0.00 0.00 36.12 5.03 R
5914 6422 1.143889 TGGTGGATGCACTGGTGTAAA 59.856 47.619 17.44 0.00 0.00 2.01 R
6230 6738 4.916041 ATGAGACTGGAAGAATTGTCCA 57.084 40.909 7.15 7.15 43.03 4.02 R
6519 7027 6.563939 CGCTATATACACAATTCGCATGTTGT 60.564 38.462 0.00 0.00 39.00 3.32 R
6966 7474 6.260936 GTCCATACCCTGAATGTGTATTTCTG 59.739 42.308 0.00 0.00 0.00 3.02 R
6986 7494 3.445096 GCCTCAAAGTTTGCTATGTCCAT 59.555 43.478 10.90 0.00 0.00 3.41 R
7093 7601 1.174712 ACCTTGCATGCTTCGTTGCT 61.175 50.000 20.33 0.00 39.60 3.91 R
7098 7606 2.855180 CAGTAAACCTTGCATGCTTCG 58.145 47.619 20.33 8.05 0.00 3.79 R
8203 8914 0.908198 CCTTAAGAGCCAGGCTGAGT 59.092 55.000 22.26 5.97 39.88 3.41 R
8545 9265 1.440618 TAACTGGCCCAACCTCAGAA 58.559 50.000 0.00 0.00 40.22 3.02 R
9392 10145 3.574396 CACTCCCTCTTGACTGTTGACTA 59.426 47.826 0.00 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
345 358 4.690159 GCAACCGCGATTCATTCC 57.310 55.556 8.23 0.00 0.00 3.01
690 734 5.114081 TGAGTTAGTAAAGGCCTTATTCGC 58.886 41.667 20.84 8.03 0.00 4.70
696 740 3.042560 GGCCTTATTCGCCATGGC 58.957 61.111 27.67 27.67 46.27 4.40
697 741 1.529244 GGCCTTATTCGCCATGGCT 60.529 57.895 33.07 18.25 46.27 4.75
698 742 1.518903 GGCCTTATTCGCCATGGCTC 61.519 60.000 33.07 7.26 46.27 4.70
699 743 1.845809 GCCTTATTCGCCATGGCTCG 61.846 60.000 33.07 19.53 40.36 5.03
925 998 2.590092 CTCCCAAACCTAGCCCGG 59.410 66.667 0.00 0.00 0.00 5.73
1349 1444 2.423898 CCCACGACGCCCTCTACAT 61.424 63.158 0.00 0.00 0.00 2.29
1483 1578 1.216710 GCTCTCAAGGACGACAGGG 59.783 63.158 0.00 0.00 0.00 4.45
1486 1581 0.112606 TCTCAAGGACGACAGGGTCT 59.887 55.000 0.00 0.00 37.12 3.85
1538 1633 1.186200 CTCATCAACCCTGTCTCGGA 58.814 55.000 0.00 0.00 0.00 4.55
1550 1645 1.405463 TGTCTCGGATCAGATGTTCGG 59.595 52.381 0.00 0.00 0.00 4.30
1596 1700 1.298602 TCACGGATTTCCATGATGCG 58.701 50.000 5.43 5.43 42.88 4.73
1597 1701 0.308684 CACGGATTTCCATGATGCGG 59.691 55.000 10.68 0.00 41.76 5.69
1598 1702 1.283793 CGGATTTCCATGATGCGGC 59.716 57.895 0.00 0.00 35.14 6.53
1600 1704 1.283793 GATTTCCATGATGCGGCCG 59.716 57.895 24.05 24.05 0.00 6.13
1683 1787 4.631813 GGCATTACTGTTGAGTTCGAAGAT 59.368 41.667 0.00 0.00 35.04 2.40
1705 1812 4.871822 TGATGAGGATGAGGAGAGTAACA 58.128 43.478 0.00 0.00 0.00 2.41
1730 1837 4.970860 ATCAGGTATGCACATCTAGCTT 57.029 40.909 0.00 0.00 0.00 3.74
1956 2077 4.238514 GTCTGACTTTAGACGTGCAAGAT 58.761 43.478 6.65 0.00 37.88 2.40
2002 2123 8.435187 AGAGGAAGATATCACAAGCATATGAAA 58.565 33.333 6.97 0.00 0.00 2.69
2019 2140 3.992999 TGAAAATATTGACCCCCAGCAT 58.007 40.909 0.00 0.00 0.00 3.79
2058 2179 2.478831 GAGATCTTGAAGGTGATCGCC 58.521 52.381 18.01 18.01 42.62 5.54
2107 2228 2.280797 TTGTCACGCTGCTGGACC 60.281 61.111 14.99 0.00 0.00 4.46
2214 2335 2.205911 GAACAGCGGAAGAAGATAGCC 58.794 52.381 0.00 0.00 0.00 3.93
2230 2351 2.886862 AGCCGAAGAGATGATGAGTG 57.113 50.000 0.00 0.00 0.00 3.51
2358 2479 2.224606 CTCAACAATGACAGTGCTGGT 58.775 47.619 2.13 0.00 34.19 4.00
2373 2494 0.817654 CTGGTACTGATGGTGCGAGA 59.182 55.000 0.00 0.00 38.27 4.04
2395 2516 3.961408 AGATAGTAAGGCAGTTGATCGGT 59.039 43.478 0.00 0.00 0.00 4.69
2415 2536 4.447724 CGGTATATCGAAAGTGGATGGTTG 59.552 45.833 0.00 0.00 0.00 3.77
2466 2587 1.704641 ACCTTTCTTTCCACCAAGGC 58.295 50.000 0.00 0.00 39.68 4.35
2557 2678 3.044059 GAAGTCCATGTGCCAGCGC 62.044 63.158 0.00 0.00 0.00 5.92
2588 2709 4.004196 TGCCATATGAATCTGCAGAGAG 57.996 45.455 22.96 6.24 0.00 3.20
2592 2713 5.421277 CCATATGAATCTGCAGAGAGGATC 58.579 45.833 22.96 14.31 0.00 3.36
2835 2956 1.762708 AAATTGTCTATGTGGCCCCG 58.237 50.000 0.00 0.00 0.00 5.73
3007 3128 6.252233 TGGGATATTGTCACAAGGAAATCAA 58.748 36.000 0.00 0.00 37.29 2.57
3429 3566 1.079612 TGCCATCAGAGACACTGCG 60.080 57.895 0.00 0.00 45.38 5.18
3638 3792 7.246171 AGCATATACAGGTCCTTATTTCGAT 57.754 36.000 0.00 0.00 0.00 3.59
3672 3826 0.462047 GGGGTGTCAATCTACCTGCG 60.462 60.000 0.00 0.00 37.15 5.18
3989 4143 3.288964 ACACTTACCTCTACATCCGGAG 58.711 50.000 11.34 4.72 0.00 4.63
3990 4144 2.034812 CACTTACCTCTACATCCGGAGC 59.965 54.545 11.34 0.00 0.00 4.70
3991 4145 2.307768 CTTACCTCTACATCCGGAGCA 58.692 52.381 11.34 0.00 0.00 4.26
3992 4146 1.688772 TACCTCTACATCCGGAGCAC 58.311 55.000 11.34 0.00 0.00 4.40
3993 4147 1.043673 ACCTCTACATCCGGAGCACC 61.044 60.000 11.34 0.00 0.00 5.01
4029 4183 3.268334 TCCAACATTGTATGGCCTACCTT 59.732 43.478 3.32 0.00 36.62 3.50
4049 4203 9.177608 CTACCTTAAGATATCATGGAGAGAGAG 57.822 40.741 3.36 0.00 0.00 3.20
4159 4319 7.433425 GTCTATTTTCTTTATCCAGCATTGTGC 59.567 37.037 0.00 0.00 45.46 4.57
4290 4453 2.063266 GTCGAACGGTTGTTGAGCATA 58.937 47.619 0.00 0.00 38.78 3.14
4291 4454 2.477375 GTCGAACGGTTGTTGAGCATAA 59.523 45.455 0.00 0.00 38.78 1.90
4292 4455 2.734606 TCGAACGGTTGTTGAGCATAAG 59.265 45.455 0.00 0.00 38.78 1.73
4294 4457 1.821216 ACGGTTGTTGAGCATAAGGG 58.179 50.000 0.00 0.00 0.00 3.95
4295 4458 1.073284 ACGGTTGTTGAGCATAAGGGT 59.927 47.619 0.00 0.00 0.00 4.34
4296 4459 1.468520 CGGTTGTTGAGCATAAGGGTG 59.531 52.381 0.00 0.00 0.00 4.61
4297 4460 2.514803 GGTTGTTGAGCATAAGGGTGT 58.485 47.619 0.00 0.00 0.00 4.16
4299 4462 2.884639 GTTGTTGAGCATAAGGGTGTGT 59.115 45.455 0.00 0.00 0.00 3.72
4300 4463 3.222173 TGTTGAGCATAAGGGTGTGTT 57.778 42.857 0.00 0.00 0.00 3.32
4302 4465 3.317711 TGTTGAGCATAAGGGTGTGTTTG 59.682 43.478 0.00 0.00 0.00 2.93
4304 4467 2.158534 TGAGCATAAGGGTGTGTTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
4305 4468 2.890945 GAGCATAAGGGTGTGTTTGGTT 59.109 45.455 0.00 0.00 0.00 3.67
4306 4469 3.304829 AGCATAAGGGTGTGTTTGGTTT 58.695 40.909 0.00 0.00 0.00 3.27
4307 4470 3.069443 AGCATAAGGGTGTGTTTGGTTTG 59.931 43.478 0.00 0.00 0.00 2.93
4309 4472 1.567357 AAGGGTGTGTTTGGTTTGCT 58.433 45.000 0.00 0.00 0.00 3.91
4310 4473 2.445682 AGGGTGTGTTTGGTTTGCTA 57.554 45.000 0.00 0.00 0.00 3.49
4312 4475 1.269569 GGGTGTGTTTGGTTTGCTAGC 60.270 52.381 8.10 8.10 0.00 3.42
4314 4477 2.287608 GGTGTGTTTGGTTTGCTAGCTC 60.288 50.000 17.23 6.44 0.00 4.09
4315 4478 2.357637 GTGTGTTTGGTTTGCTAGCTCA 59.642 45.455 17.23 6.42 0.00 4.26
4316 4479 2.357637 TGTGTTTGGTTTGCTAGCTCAC 59.642 45.455 17.23 11.97 0.00 3.51
4317 4480 1.953686 TGTTTGGTTTGCTAGCTCACC 59.046 47.619 22.45 22.45 0.00 4.02
4319 4482 3.181449 TGTTTGGTTTGCTAGCTCACCTA 60.181 43.478 26.67 20.35 0.00 3.08
4320 4483 3.334583 TTGGTTTGCTAGCTCACCTAG 57.665 47.619 26.67 0.00 45.26 3.02
4335 4498 0.179034 CCTAGCTTAGCTTGGCCAGG 60.179 60.000 20.40 11.24 43.48 4.45
4336 4499 0.543749 CTAGCTTAGCTTGGCCAGGT 59.456 55.000 13.44 13.62 40.44 4.00
4338 4501 0.991920 AGCTTAGCTTGGCCAGGTTA 59.008 50.000 17.25 12.31 33.89 2.85
4339 4502 1.354368 AGCTTAGCTTGGCCAGGTTAA 59.646 47.619 20.46 20.46 33.89 2.01
4340 4503 1.472878 GCTTAGCTTGGCCAGGTTAAC 59.527 52.381 18.36 12.32 34.13 2.01
4341 4504 2.092323 CTTAGCTTGGCCAGGTTAACC 58.908 52.381 18.36 17.41 34.13 2.85
4343 4506 1.368374 AGCTTGGCCAGGTTAACCTA 58.632 50.000 26.66 8.85 46.65 3.08
4347 4510 4.979657 GCCAGGTTAACCTAGCCC 57.020 61.111 28.62 13.65 46.65 5.19
4348 4511 2.308185 GCCAGGTTAACCTAGCCCT 58.692 57.895 28.62 4.94 46.65 5.19
4349 4512 0.180642 GCCAGGTTAACCTAGCCCTC 59.819 60.000 28.62 11.17 46.65 4.30
4350 4513 1.880941 CCAGGTTAACCTAGCCCTCT 58.119 55.000 26.66 0.00 46.65 3.69
4353 4516 2.108970 AGGTTAACCTAGCCCTCTTCG 58.891 52.381 26.03 0.00 46.48 3.79
4354 4517 1.138464 GGTTAACCTAGCCCTCTTCGG 59.862 57.143 17.83 0.00 0.00 4.30
4361 4524 3.942601 GCCCTCTTCGGCTAGAGT 58.057 61.111 11.13 0.00 46.10 3.24
4362 4525 1.737201 GCCCTCTTCGGCTAGAGTC 59.263 63.158 11.13 0.00 46.10 3.36
4363 4526 2.026522 CCCTCTTCGGCTAGAGTCG 58.973 63.158 11.13 0.00 45.75 4.18
4365 4528 0.658897 CCTCTTCGGCTAGAGTCGTC 59.341 60.000 3.13 0.00 44.53 4.20
4367 4530 1.738350 CTCTTCGGCTAGAGTCGTCAA 59.262 52.381 3.13 0.00 44.53 3.18
4368 4531 2.156917 TCTTCGGCTAGAGTCGTCAAA 58.843 47.619 3.13 0.00 44.53 2.69
4369 4532 2.555325 TCTTCGGCTAGAGTCGTCAAAA 59.445 45.455 3.13 0.00 44.53 2.44
4370 4533 2.631418 TCGGCTAGAGTCGTCAAAAG 57.369 50.000 3.13 0.00 44.53 2.27
4371 4534 0.992802 CGGCTAGAGTCGTCAAAAGC 59.007 55.000 0.00 0.00 38.51 3.51
4372 4535 1.668919 CGGCTAGAGTCGTCAAAAGCA 60.669 52.381 0.00 0.00 38.51 3.91
4373 4536 2.413837 GGCTAGAGTCGTCAAAAGCAA 58.586 47.619 0.00 0.00 30.62 3.91
4374 4537 2.413453 GGCTAGAGTCGTCAAAAGCAAG 59.587 50.000 0.00 0.00 30.62 4.01
4375 4538 3.318017 GCTAGAGTCGTCAAAAGCAAGA 58.682 45.455 0.00 0.00 0.00 3.02
4377 4540 3.460857 AGAGTCGTCAAAAGCAAGACT 57.539 42.857 0.00 0.00 43.88 3.24
4378 4541 3.126831 AGAGTCGTCAAAAGCAAGACTG 58.873 45.455 0.87 0.00 41.61 3.51
4379 4542 2.866762 GAGTCGTCAAAAGCAAGACTGT 59.133 45.455 0.87 0.00 41.61 3.55
4380 4543 2.609459 AGTCGTCAAAAGCAAGACTGTG 59.391 45.455 0.00 0.00 40.25 3.66
4382 4545 2.351418 TCGTCAAAAGCAAGACTGTGTG 59.649 45.455 0.00 0.00 32.68 3.82
4383 4546 2.095853 CGTCAAAAGCAAGACTGTGTGT 59.904 45.455 0.00 0.00 32.68 3.72
4384 4547 3.426159 CGTCAAAAGCAAGACTGTGTGTT 60.426 43.478 0.00 0.00 32.68 3.32
4386 4549 4.324402 GTCAAAAGCAAGACTGTGTGTTTG 59.676 41.667 0.00 0.00 0.00 2.93
4387 4550 3.508744 AAAGCAAGACTGTGTGTTTGG 57.491 42.857 0.00 0.00 0.00 3.28
4388 4551 2.418368 AGCAAGACTGTGTGTTTGGA 57.582 45.000 0.00 0.00 0.00 3.53
4389 4552 2.722094 AGCAAGACTGTGTGTTTGGAA 58.278 42.857 0.00 0.00 0.00 3.53
4390 4553 3.088532 AGCAAGACTGTGTGTTTGGAAA 58.911 40.909 0.00 0.00 0.00 3.13
4391 4554 3.129287 AGCAAGACTGTGTGTTTGGAAAG 59.871 43.478 0.00 0.00 0.00 2.62
4392 4555 3.128589 GCAAGACTGTGTGTTTGGAAAGA 59.871 43.478 0.00 0.00 0.00 2.52
4393 4556 4.662145 CAAGACTGTGTGTTTGGAAAGAC 58.338 43.478 0.00 0.00 33.23 3.01
4394 4557 2.936498 AGACTGTGTGTTTGGAAAGACG 59.064 45.455 0.00 0.00 35.16 4.18
4395 4558 1.400494 ACTGTGTGTTTGGAAAGACGC 59.600 47.619 6.11 6.11 41.42 5.19
4396 4559 1.400142 CTGTGTGTTTGGAAAGACGCA 59.600 47.619 13.18 13.18 46.19 5.24
4397 4560 1.813178 TGTGTGTTTGGAAAGACGCAA 59.187 42.857 11.87 0.00 45.66 4.85
4399 4562 3.246619 GTGTGTTTGGAAAGACGCAAAA 58.753 40.909 7.79 0.00 40.93 2.44
4400 4563 3.862845 GTGTGTTTGGAAAGACGCAAAAT 59.137 39.130 7.79 0.00 40.93 1.82
4401 4564 5.038033 GTGTGTTTGGAAAGACGCAAAATA 58.962 37.500 7.79 0.00 40.93 1.40
4403 4654 5.066634 TGTGTTTGGAAAGACGCAAAATAGA 59.933 36.000 0.00 0.00 35.16 1.98
4413 4664 7.907214 AAGACGCAAAATAGAATCACTAACT 57.093 32.000 0.00 0.00 34.56 2.24
4416 4667 5.163754 ACGCAAAATAGAATCACTAACTGCC 60.164 40.000 0.00 0.00 33.95 4.85
4417 4668 5.163764 CGCAAAATAGAATCACTAACTGCCA 60.164 40.000 0.00 0.00 33.95 4.92
4418 4669 6.620678 GCAAAATAGAATCACTAACTGCCAA 58.379 36.000 0.00 0.00 34.56 4.52
4428 4679 3.067180 CACTAACTGCCAAATAGCCCATG 59.933 47.826 0.00 0.00 0.00 3.66
4429 4680 2.530460 AACTGCCAAATAGCCCATGA 57.470 45.000 0.00 0.00 0.00 3.07
4430 4681 2.761786 ACTGCCAAATAGCCCATGAT 57.238 45.000 0.00 0.00 0.00 2.45
4431 4682 2.590821 ACTGCCAAATAGCCCATGATC 58.409 47.619 0.00 0.00 0.00 2.92
4432 4683 1.538512 CTGCCAAATAGCCCATGATCG 59.461 52.381 0.00 0.00 0.00 3.69
4434 4685 2.105649 TGCCAAATAGCCCATGATCGTA 59.894 45.455 0.00 0.00 0.00 3.43
4436 4687 3.758554 GCCAAATAGCCCATGATCGTATT 59.241 43.478 0.00 0.00 0.00 1.89
4437 4688 4.218417 GCCAAATAGCCCATGATCGTATTT 59.782 41.667 0.00 0.00 0.00 1.40
4438 4689 5.278957 GCCAAATAGCCCATGATCGTATTTT 60.279 40.000 0.00 0.00 0.00 1.82
4439 4690 6.738453 GCCAAATAGCCCATGATCGTATTTTT 60.738 38.462 0.00 0.00 0.00 1.94
4453 4704 3.442441 TTTTTGCCACTGCGGGAG 58.558 55.556 0.00 0.00 41.78 4.30
4454 4705 1.152860 TTTTTGCCACTGCGGGAGA 60.153 52.632 2.65 0.00 41.78 3.71
4455 4706 1.172180 TTTTTGCCACTGCGGGAGAG 61.172 55.000 2.65 0.00 41.78 3.20
4456 4707 4.704833 TTGCCACTGCGGGAGAGC 62.705 66.667 2.65 6.44 41.78 4.09
4460 4711 4.069232 CACTGCGGGAGAGCCGAA 62.069 66.667 2.65 0.00 36.02 4.30
4461 4712 3.077556 ACTGCGGGAGAGCCGAAT 61.078 61.111 2.65 0.00 36.02 3.34
4462 4713 2.187946 CTGCGGGAGAGCCGAATT 59.812 61.111 0.00 0.00 36.02 2.17
4463 4714 2.125147 TGCGGGAGAGCCGAATTG 60.125 61.111 0.00 0.00 36.02 2.32
4464 4715 2.897350 GCGGGAGAGCCGAATTGG 60.897 66.667 0.00 0.00 42.50 3.16
4473 4724 4.225497 CCGAATTGGCTCACCTCC 57.775 61.111 0.00 0.00 36.63 4.30
4474 4725 1.815421 CCGAATTGGCTCACCTCCG 60.815 63.158 0.00 0.00 36.63 4.63
4475 4726 2.464459 CGAATTGGCTCACCTCCGC 61.464 63.158 0.00 0.00 36.63 5.54
4476 4727 1.377202 GAATTGGCTCACCTCCGCA 60.377 57.895 0.00 0.00 36.63 5.69
4477 4728 1.372087 GAATTGGCTCACCTCCGCAG 61.372 60.000 0.00 0.00 36.63 5.18
4489 4740 4.250080 CCGCAGGCAAGCTTTTTC 57.750 55.556 0.00 0.00 46.14 2.29
4490 4741 1.662044 CCGCAGGCAAGCTTTTTCT 59.338 52.632 0.00 0.00 46.14 2.52
4492 4743 0.665369 CGCAGGCAAGCTTTTTCTGG 60.665 55.000 17.09 7.86 0.00 3.86
4493 4744 0.947660 GCAGGCAAGCTTTTTCTGGC 60.948 55.000 17.09 10.63 32.22 4.85
4494 4745 0.665369 CAGGCAAGCTTTTTCTGGCG 60.665 55.000 0.00 0.00 33.81 5.69
4497 4748 0.249447 GCAAGCTTTTTCTGGCGGTT 60.249 50.000 0.00 0.00 0.00 4.44
4498 4749 1.000717 GCAAGCTTTTTCTGGCGGTTA 60.001 47.619 0.00 0.00 0.00 2.85
4500 4751 3.712187 CAAGCTTTTTCTGGCGGTTAAA 58.288 40.909 0.00 0.00 0.00 1.52
4501 4752 3.643159 AGCTTTTTCTGGCGGTTAAAG 57.357 42.857 14.39 14.39 0.00 1.85
4502 4753 2.296190 AGCTTTTTCTGGCGGTTAAAGG 59.704 45.455 17.92 10.96 0.00 3.11
4503 4754 2.672714 CTTTTTCTGGCGGTTAAAGGC 58.327 47.619 12.18 0.00 0.00 4.35
4504 4755 1.989706 TTTTCTGGCGGTTAAAGGCT 58.010 45.000 7.17 0.00 35.01 4.58
4507 4758 2.863132 TCTGGCGGTTAAAGGCTAAA 57.137 45.000 7.17 0.00 35.01 1.85
4510 4761 3.442273 TCTGGCGGTTAAAGGCTAAATTG 59.558 43.478 7.17 0.00 35.01 2.32
4511 4762 2.094442 TGGCGGTTAAAGGCTAAATTGC 60.094 45.455 7.17 0.00 35.01 3.56
4525 4776 5.338365 GCTAAATTGCCATCATATGCTAGC 58.662 41.667 8.10 8.10 0.00 3.42
4527 4778 6.349944 GCTAAATTGCCATCATATGCTAGCTT 60.350 38.462 17.23 12.56 0.00 3.74
4530 4781 7.713734 AATTGCCATCATATGCTAGCTTTAT 57.286 32.000 17.23 10.27 0.00 1.40
4533 4784 8.812513 TTGCCATCATATGCTAGCTTTATTAT 57.187 30.769 17.23 7.53 0.00 1.28
4534 4785 8.442632 TGCCATCATATGCTAGCTTTATTATC 57.557 34.615 17.23 0.00 0.00 1.75
4535 4786 7.500227 TGCCATCATATGCTAGCTTTATTATCC 59.500 37.037 17.23 5.04 0.00 2.59
4536 4787 7.718753 GCCATCATATGCTAGCTTTATTATCCT 59.281 37.037 17.23 0.00 0.00 3.24
4556 4807 7.573968 ATCCTAACAAAATGAGTATCCTTGC 57.426 36.000 0.00 0.00 0.00 4.01
4557 4808 5.885912 TCCTAACAAAATGAGTATCCTTGCC 59.114 40.000 0.00 0.00 0.00 4.52
4558 4809 5.652014 CCTAACAAAATGAGTATCCTTGCCA 59.348 40.000 0.00 0.00 0.00 4.92
4559 4810 5.649782 AACAAAATGAGTATCCTTGCCAG 57.350 39.130 0.00 0.00 0.00 4.85
4560 4811 4.019174 ACAAAATGAGTATCCTTGCCAGG 58.981 43.478 0.00 0.00 42.50 4.45
4561 4812 2.355010 AATGAGTATCCTTGCCAGGC 57.645 50.000 3.66 3.66 40.58 4.85
4563 4814 0.991146 TGAGTATCCTTGCCAGGCAA 59.009 50.000 25.81 25.81 46.80 4.52
4564 4815 1.340017 TGAGTATCCTTGCCAGGCAAC 60.340 52.381 23.88 13.95 43.99 4.17
4565 4816 0.392998 AGTATCCTTGCCAGGCAACG 60.393 55.000 23.88 19.02 43.99 4.10
4566 4817 1.748879 TATCCTTGCCAGGCAACGC 60.749 57.895 23.88 0.00 43.99 4.84
4568 4819 2.196997 ATCCTTGCCAGGCAACGCTA 62.197 55.000 23.88 8.96 43.99 4.26
4572 4823 2.512515 GCCAGGCAACGCTAGGAG 60.513 66.667 6.55 0.00 46.39 3.69
4573 4824 2.512515 CCAGGCAACGCTAGGAGC 60.513 66.667 0.00 0.00 46.39 4.70
4574 4825 2.581354 CAGGCAACGCTAGGAGCT 59.419 61.111 0.00 0.00 39.60 4.09
4575 4826 1.812922 CAGGCAACGCTAGGAGCTG 60.813 63.158 0.00 0.00 39.60 4.24
4576 4827 3.198489 GGCAACGCTAGGAGCTGC 61.198 66.667 0.00 0.00 40.42 5.25
4577 4828 3.198489 GCAACGCTAGGAGCTGCC 61.198 66.667 0.00 0.00 39.60 4.85
4578 4829 2.512515 CAACGCTAGGAGCTGCCC 60.513 66.667 0.00 0.00 39.60 5.36
4579 4830 2.685380 AACGCTAGGAGCTGCCCT 60.685 61.111 0.00 13.10 39.60 5.19
4580 4831 2.294078 AACGCTAGGAGCTGCCCTT 61.294 57.895 13.65 0.00 39.60 3.95
4582 4833 2.515757 GCTAGGAGCTGCCCTTGC 60.516 66.667 20.47 20.47 44.95 4.01
4584 4835 2.285668 TAGGAGCTGCCCTTGCCT 60.286 61.111 13.65 7.66 37.74 4.75
4589 4840 0.182299 GAGCTGCCCTTGCCTAAGAT 59.818 55.000 0.00 0.00 35.92 2.40
4590 4841 0.182299 AGCTGCCCTTGCCTAAGATC 59.818 55.000 0.00 0.00 35.92 2.75
4592 4843 0.548031 CTGCCCTTGCCTAAGATCCA 59.452 55.000 0.00 0.00 35.92 3.41
4593 4844 0.998928 TGCCCTTGCCTAAGATCCAA 59.001 50.000 0.00 0.00 35.92 3.53
4594 4845 1.357420 TGCCCTTGCCTAAGATCCAAA 59.643 47.619 0.00 0.00 35.92 3.28
4595 4846 1.751351 GCCCTTGCCTAAGATCCAAAC 59.249 52.381 0.00 0.00 35.92 2.93
4596 4847 2.017049 CCCTTGCCTAAGATCCAAACG 58.983 52.381 0.00 0.00 35.92 3.60
4598 4849 2.083774 CTTGCCTAAGATCCAAACGCA 58.916 47.619 0.00 0.00 35.92 5.24
4599 4850 1.448985 TGCCTAAGATCCAAACGCAC 58.551 50.000 0.00 0.00 0.00 5.34
4600 4851 0.733150 GCCTAAGATCCAAACGCACC 59.267 55.000 0.00 0.00 0.00 5.01
4601 4852 1.379527 CCTAAGATCCAAACGCACCC 58.620 55.000 0.00 0.00 0.00 4.61
4658 4909 8.722342 ACAATGAAATGTTACGTTCATACAAC 57.278 30.769 12.41 0.00 42.30 3.32
4789 5279 9.197694 CAGTAGCATCATAGTAAAAGGTATGAC 57.802 37.037 0.00 0.00 38.24 3.06
5059 5555 7.989947 TCCTAGGAGGATTGTAACATAAACT 57.010 36.000 7.62 0.00 40.06 2.66
5083 5579 8.535335 ACTCTATCTTCTCAATACAAAGAAGCA 58.465 33.333 7.15 0.00 45.27 3.91
5099 5595 3.188048 AGAAGCACAAGAATCTCTTTGCG 59.812 43.478 13.14 0.00 41.20 4.85
5107 5603 5.296780 ACAAGAATCTCTTTGCGTTTTCTCA 59.703 36.000 0.00 0.00 33.78 3.27
5111 5607 6.260936 AGAATCTCTTTGCGTTTTCTCAAGAA 59.739 34.615 0.00 0.00 0.00 2.52
5323 5819 1.472188 ACGAGTACCTGAAGCCTACC 58.528 55.000 0.00 0.00 0.00 3.18
5854 6362 2.175715 GGAATTGGCTTGGGAGAGGTAT 59.824 50.000 0.00 0.00 0.00 2.73
5881 6389 3.070018 CCTATCATCACAGGAAATCGGC 58.930 50.000 0.00 0.00 33.42 5.54
6230 6738 2.373169 TCTGACAAGTGGCTTGGATCTT 59.627 45.455 12.66 0.00 44.81 2.40
6519 7027 5.136828 TCAAAAGGCAGTATCTGGTGAAAA 58.863 37.500 0.00 0.00 31.21 2.29
6966 7474 4.078516 AGTGCGGCCGGTACCTTC 62.079 66.667 29.38 8.68 30.59 3.46
6986 7494 6.012858 ACCTTCAGAAATACACATTCAGGGTA 60.013 38.462 0.00 0.00 41.19 3.69
7054 7562 5.215903 CCTACGTACAATGCTATCAGACAG 58.784 45.833 0.00 0.00 0.00 3.51
7055 7563 4.720649 ACGTACAATGCTATCAGACAGT 57.279 40.909 0.00 0.00 0.00 3.55
7124 7632 1.669604 TGCAAGGTTTACTGCGTTGA 58.330 45.000 0.00 0.00 34.73 3.18
7133 7641 1.657822 TACTGCGTTGAACTTGTGCA 58.342 45.000 0.00 0.00 0.00 4.57
7207 7715 2.876550 TGAGATGGATACGTACACGAGG 59.123 50.000 9.04 0.00 43.02 4.63
7208 7716 2.877168 GAGATGGATACGTACACGAGGT 59.123 50.000 9.04 0.00 43.02 3.85
7708 8419 3.369576 GGCTGACCAAGAACCCTAACTAG 60.370 52.174 0.00 0.00 35.26 2.57
7924 8635 8.424918 TCAATGATAACCCAGAAGACTAAGATC 58.575 37.037 0.00 0.00 0.00 2.75
8203 8914 4.776435 TGTTATCTCCAGCAATGGATGA 57.224 40.909 0.00 0.00 37.34 2.92
8305 9016 0.699577 TCCCCCACTTCACCAAGGAA 60.700 55.000 0.00 0.00 33.37 3.36
8545 9265 1.512926 GTGACATGACGAACTTGCCT 58.487 50.000 0.00 0.00 0.00 4.75
8564 9287 1.351017 CTTCTGAGGTTGGGCCAGTTA 59.649 52.381 6.23 0.00 40.61 2.24
8912 9636 0.676782 ACGGCTCAATACTTGCACCC 60.677 55.000 0.00 0.00 0.00 4.61
8973 9699 3.008049 GGTCTGTTAGGGTTGTCTGTGAT 59.992 47.826 0.00 0.00 0.00 3.06
8975 9701 5.104900 GGTCTGTTAGGGTTGTCTGTGATAT 60.105 44.000 0.00 0.00 0.00 1.63
9078 9804 5.509498 AGTGCATGGATATAGTGTTTTGGT 58.491 37.500 0.00 0.00 0.00 3.67
9102 9828 4.576053 GCTGTTGGATGAGCAATGTATGTA 59.424 41.667 0.00 0.00 35.15 2.29
9210 9961 2.064762 CTATGCTACGGCTTGATGCTC 58.935 52.381 0.00 0.00 42.39 4.26
9216 9967 3.553922 GCTACGGCTTGATGCTCTCTTAT 60.554 47.826 0.00 0.00 42.39 1.73
9217 9968 3.550437 ACGGCTTGATGCTCTCTTATT 57.450 42.857 0.00 0.00 42.39 1.40
9257 10008 4.314440 TGAGGTGCAGCGGGTGTC 62.314 66.667 10.78 2.55 0.00 3.67
9287 10038 8.982091 ATAGTGATGAGCTACTAGTTAAGTGA 57.018 34.615 0.00 0.00 39.39 3.41
9295 10046 4.971220 GCTACTAGTTAAGTGATCGACTGC 59.029 45.833 0.00 0.00 39.39 4.40
9334 10087 4.908601 TGCCAACTATTTTCTCTCTCCA 57.091 40.909 0.00 0.00 0.00 3.86
9352 10105 6.781014 TCTCTCCAAAAGTAGTCACCTCTTTA 59.219 38.462 0.00 0.00 32.22 1.85
9429 10182 1.812571 GGAGTGCCACTGGTACAAATG 59.187 52.381 17.60 0.00 40.76 2.32
9432 10185 0.897863 TGCCACTGGTACAAATGCCC 60.898 55.000 0.00 0.00 38.70 5.36
9527 10284 8.158132 TGGTACATAATGTCAAAGGTTAACTCA 58.842 33.333 5.42 0.00 0.00 3.41
9590 10348 7.602517 AACTGGAATCTGAAATAAGAAGACG 57.397 36.000 0.00 0.00 0.00 4.18
9711 10471 9.897744 CTTTTCTAGAATGTTTCATTGTTGCTA 57.102 29.630 5.89 0.00 0.00 3.49
9712 10472 9.897744 TTTTCTAGAATGTTTCATTGTTGCTAG 57.102 29.630 5.89 5.13 0.00 3.42
9713 10473 8.846943 TTCTAGAATGTTTCATTGTTGCTAGA 57.153 30.769 0.00 11.24 32.45 2.43
9714 10474 8.846943 TCTAGAATGTTTCATTGTTGCTAGAA 57.153 30.769 12.16 0.00 31.66 2.10
9715 10475 9.453572 TCTAGAATGTTTCATTGTTGCTAGAAT 57.546 29.630 12.16 0.00 31.66 2.40
9727 10487 9.102757 CATTGTTGCTAGAATACAGAATACACT 57.897 33.333 0.00 0.00 0.00 3.55
9742 10502 9.021807 ACAGAATACACTACTAGCTGTCTTTTA 57.978 33.333 0.00 0.00 29.97 1.52
9758 10518 9.899226 GCTGTCTTTTATAGAATGTTTGAAAGT 57.101 29.630 0.00 0.00 33.81 2.66
9799 10559 8.673711 TGGAATTTGGAAGTACTTAATTCATCG 58.326 33.333 27.65 0.00 37.09 3.84
9800 10560 7.644157 GGAATTTGGAAGTACTTAATTCATCGC 59.356 37.037 27.65 15.81 37.09 4.58
9801 10561 7.624360 ATTTGGAAGTACTTAATTCATCGCA 57.376 32.000 8.42 0.00 32.39 5.10
9802 10562 7.441890 TTTGGAAGTACTTAATTCATCGCAA 57.558 32.000 8.42 0.00 32.39 4.85
9803 10563 7.441890 TTGGAAGTACTTAATTCATCGCAAA 57.558 32.000 8.42 0.00 32.39 3.68
9804 10564 7.441890 TGGAAGTACTTAATTCATCGCAAAA 57.558 32.000 8.42 0.00 32.39 2.44
9805 10565 8.050778 TGGAAGTACTTAATTCATCGCAAAAT 57.949 30.769 8.42 0.00 32.39 1.82
9806 10566 7.967854 TGGAAGTACTTAATTCATCGCAAAATG 59.032 33.333 8.42 0.00 32.39 2.32
9807 10567 7.968405 GGAAGTACTTAATTCATCGCAAAATGT 59.032 33.333 8.42 0.00 32.39 2.71
9808 10568 9.982291 GAAGTACTTAATTCATCGCAAAATGTA 57.018 29.630 8.42 0.00 31.23 2.29
9810 10570 9.988350 AGTACTTAATTCATCGCAAAATGTAAG 57.012 29.630 0.00 0.00 0.00 2.34
9811 10571 9.221775 GTACTTAATTCATCGCAAAATGTAAGG 57.778 33.333 0.00 0.00 0.00 2.69
9812 10572 6.751888 ACTTAATTCATCGCAAAATGTAAGGC 59.248 34.615 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
345 358 1.860950 CGTGAGGCCATTACGATTCAG 59.139 52.381 18.03 0.00 40.01 3.02
874 945 1.004200 CGTTACCTTGGGTTCGGCT 60.004 57.895 0.00 0.00 37.09 5.52
925 998 2.417936 GGGTCGAATCGGAGAGGC 59.582 66.667 1.76 0.00 43.63 4.70
1308 1403 2.695759 CGAGAGCACGCTGTCCTCT 61.696 63.158 10.28 2.41 38.58 3.69
1483 1578 2.368875 TCTTCTTGTCAGGGTTCCAGAC 59.631 50.000 3.01 3.01 39.92 3.51
1486 1581 2.106511 CCTTCTTCTTGTCAGGGTTCCA 59.893 50.000 0.00 0.00 0.00 3.53
1538 1633 0.179062 GAGCTGGCCGAACATCTGAT 60.179 55.000 0.00 0.00 0.00 2.90
1550 1645 1.817099 CCAATGGAGACGAGCTGGC 60.817 63.158 0.00 0.00 0.00 4.85
1605 1709 2.281484 GAAGGCACACCGGCAGAA 60.281 61.111 0.00 0.00 44.47 3.02
1683 1787 4.871822 TGTTACTCTCCTCATCCTCATCA 58.128 43.478 0.00 0.00 0.00 3.07
1705 1812 7.013823 AGCTAGATGTGCATACCTGATAAAT 57.986 36.000 0.00 0.00 0.00 1.40
1956 2077 5.357742 TCTGAAGCCAGTAAGCATCAATA 57.642 39.130 0.00 0.00 39.72 1.90
2002 2123 2.225117 GGCTATGCTGGGGGTCAATATT 60.225 50.000 0.00 0.00 0.00 1.28
2058 2179 1.753649 ACATCTCTGTCATCACCCTCG 59.246 52.381 0.00 0.00 0.00 4.63
2214 2335 2.428530 TGGGTCACTCATCATCTCTTCG 59.571 50.000 0.00 0.00 0.00 3.79
2230 2351 5.654497 CAAAATTGGAGCTAATCTTGGGTC 58.346 41.667 0.00 0.00 35.73 4.46
2266 2387 2.071540 CTTTGCAGATGCTCTCGTTGA 58.928 47.619 6.35 0.00 42.66 3.18
2340 2461 3.058708 CAGTACCAGCACTGTCATTGTTG 60.059 47.826 0.70 0.70 40.89 3.33
2358 2479 3.821748 ACTATCTCTCGCACCATCAGTA 58.178 45.455 0.00 0.00 0.00 2.74
2373 2494 3.961408 ACCGATCAACTGCCTTACTATCT 59.039 43.478 0.00 0.00 0.00 1.98
2395 2516 6.765989 CCTTTCAACCATCCACTTTCGATATA 59.234 38.462 0.00 0.00 0.00 0.86
2431 2552 7.765695 AAGAAAGGTTATCAAGATCAAGCAA 57.234 32.000 0.00 0.00 0.00 3.91
2466 2587 5.756195 TTTTGTTGGACATCAAGAGACTG 57.244 39.130 0.00 0.00 35.80 3.51
2557 2678 0.390492 TCATATGGCAGAGGTCGCAG 59.610 55.000 2.13 0.00 0.00 5.18
2588 2709 5.982516 GGCATATCAGATATCTTCACGATCC 59.017 44.000 1.33 0.00 33.48 3.36
2592 2713 5.958955 TCTGGCATATCAGATATCTTCACG 58.041 41.667 1.33 0.00 38.70 4.35
2835 2956 3.648339 TCAGCAACCAAAGCTTTCATC 57.352 42.857 9.23 0.00 41.14 2.92
3429 3566 1.401018 GGCAACACGTCATTAGCCAAC 60.401 52.381 13.26 0.00 41.63 3.77
3638 3792 3.479203 CCCATGCGAGGGTGGCTA 61.479 66.667 5.14 0.00 44.24 3.93
3672 3826 7.255491 GGTACCCTTTATAATAACAGTGTGC 57.745 40.000 0.00 0.00 0.00 4.57
3744 3898 2.298610 CCAAGCATCTGCATGACATCT 58.701 47.619 8.84 0.00 41.77 2.90
3924 4078 3.117738 CCTGGGCATTCTGAATAGTTCCT 60.118 47.826 1.98 0.00 0.00 3.36
3995 4149 1.972872 ATGTTGGATTCCGGAGCATC 58.027 50.000 3.34 5.85 0.00 3.91
3996 4150 2.026641 CAATGTTGGATTCCGGAGCAT 58.973 47.619 3.34 0.00 0.00 3.79
4029 4183 8.443979 TGTTCTCTCTCTCTCCATGATATCTTA 58.556 37.037 3.98 0.00 0.00 2.10
4049 4203 5.348164 GCTCTCCTTTCATCTAGTGTTCTC 58.652 45.833 0.00 0.00 0.00 2.87
4159 4319 6.883217 AGGATATATTCAAGCACAATAGCCAG 59.117 38.462 0.00 0.00 32.30 4.85
4235 4398 4.922206 AGAGGCCACAAACATATTCAGAA 58.078 39.130 5.01 0.00 0.00 3.02
4238 4401 4.574674 AGAGAGGCCACAAACATATTCA 57.425 40.909 5.01 0.00 0.00 2.57
4290 4453 1.567357 AGCAAACCAAACACACCCTT 58.433 45.000 0.00 0.00 0.00 3.95
4291 4454 2.306847 CTAGCAAACCAAACACACCCT 58.693 47.619 0.00 0.00 0.00 4.34
4292 4455 1.269569 GCTAGCAAACCAAACACACCC 60.270 52.381 10.63 0.00 0.00 4.61
4294 4457 2.357637 TGAGCTAGCAAACCAAACACAC 59.642 45.455 18.83 0.00 0.00 3.82
4295 4458 2.357637 GTGAGCTAGCAAACCAAACACA 59.642 45.455 18.83 0.00 0.00 3.72
4296 4459 2.287608 GGTGAGCTAGCAAACCAAACAC 60.288 50.000 25.88 16.62 32.69 3.32
4297 4460 1.953686 GGTGAGCTAGCAAACCAAACA 59.046 47.619 25.88 8.28 32.69 2.83
4299 4462 2.656947 AGGTGAGCTAGCAAACCAAA 57.343 45.000 29.88 3.43 35.01 3.28
4300 4463 3.334583 CTAGGTGAGCTAGCAAACCAA 57.665 47.619 29.88 8.99 35.01 3.67
4312 4475 1.474143 GGCCAAGCTAAGCTAGGTGAG 60.474 57.143 0.00 1.49 38.25 3.51
4314 4477 0.253044 TGGCCAAGCTAAGCTAGGTG 59.747 55.000 0.61 0.00 38.25 4.00
4315 4478 0.543749 CTGGCCAAGCTAAGCTAGGT 59.456 55.000 7.01 0.00 38.25 3.08
4316 4479 3.393472 CTGGCCAAGCTAAGCTAGG 57.607 57.895 7.01 0.00 38.25 3.02
4317 4480 0.543749 ACCTGGCCAAGCTAAGCTAG 59.456 55.000 7.01 12.67 38.25 3.42
4319 4482 0.991920 TAACCTGGCCAAGCTAAGCT 59.008 50.000 7.01 0.00 42.56 3.74
4320 4483 1.472878 GTTAACCTGGCCAAGCTAAGC 59.527 52.381 7.01 0.00 0.00 3.09
4321 4484 2.092323 GGTTAACCTGGCCAAGCTAAG 58.908 52.381 17.83 0.00 0.00 2.18
4322 4485 1.708551 AGGTTAACCTGGCCAAGCTAA 59.291 47.619 26.57 0.00 46.55 3.09
4323 4486 1.368374 AGGTTAACCTGGCCAAGCTA 58.632 50.000 26.57 0.00 46.55 3.32
4324 4487 2.164393 AGGTTAACCTGGCCAAGCT 58.836 52.632 26.57 3.04 46.55 3.74
4325 4488 4.843624 AGGTTAACCTGGCCAAGC 57.156 55.556 26.57 0.05 46.55 4.01
4332 4495 5.305399 CCGAAGAGGGCTAGGTTAACCTG 62.305 56.522 33.19 23.49 41.00 4.00
4333 4496 3.218212 CCGAAGAGGGCTAGGTTAACCT 61.218 54.545 29.46 29.46 42.60 3.50
4335 4498 2.598686 CCGAAGAGGGCTAGGTTAAC 57.401 55.000 0.00 0.00 35.97 2.01
4345 4508 0.748729 ACGACTCTAGCCGAAGAGGG 60.749 60.000 11.71 6.67 46.11 4.30
4346 4509 0.658897 GACGACTCTAGCCGAAGAGG 59.341 60.000 11.71 0.13 46.11 3.69
4348 4511 1.817357 TTGACGACTCTAGCCGAAGA 58.183 50.000 0.00 0.00 0.00 2.87
4349 4512 2.631418 TTTGACGACTCTAGCCGAAG 57.369 50.000 0.00 0.00 0.00 3.79
4350 4513 2.925306 GCTTTTGACGACTCTAGCCGAA 60.925 50.000 0.00 0.00 0.00 4.30
4353 4516 2.080286 TGCTTTTGACGACTCTAGCC 57.920 50.000 0.00 0.00 0.00 3.93
4354 4517 3.122111 GTCTTGCTTTTGACGACTCTAGC 59.878 47.826 0.00 0.00 0.00 3.42
4356 4519 4.202121 ACAGTCTTGCTTTTGACGACTCTA 60.202 41.667 0.00 0.00 38.16 2.43
4358 4521 2.866762 ACAGTCTTGCTTTTGACGACTC 59.133 45.455 0.00 0.00 38.16 3.36
4359 4522 2.609459 CACAGTCTTGCTTTTGACGACT 59.391 45.455 0.00 0.00 38.16 4.18
4361 4524 2.351418 CACACAGTCTTGCTTTTGACGA 59.649 45.455 0.00 0.00 38.16 4.20
4362 4525 2.095853 ACACACAGTCTTGCTTTTGACG 59.904 45.455 0.00 0.00 38.16 4.35
4363 4526 3.764885 ACACACAGTCTTGCTTTTGAC 57.235 42.857 0.00 0.00 0.00 3.18
4365 4528 3.613737 CCAAACACACAGTCTTGCTTTTG 59.386 43.478 0.00 0.00 0.00 2.44
4367 4530 3.088532 TCCAAACACACAGTCTTGCTTT 58.911 40.909 0.00 0.00 0.00 3.51
4368 4531 2.722094 TCCAAACACACAGTCTTGCTT 58.278 42.857 0.00 0.00 0.00 3.91
4369 4532 2.418368 TCCAAACACACAGTCTTGCT 57.582 45.000 0.00 0.00 0.00 3.91
4370 4533 3.128589 TCTTTCCAAACACACAGTCTTGC 59.871 43.478 0.00 0.00 0.00 4.01
4371 4534 4.662145 GTCTTTCCAAACACACAGTCTTG 58.338 43.478 0.00 0.00 0.00 3.02
4372 4535 3.374058 CGTCTTTCCAAACACACAGTCTT 59.626 43.478 0.00 0.00 0.00 3.01
4373 4536 2.936498 CGTCTTTCCAAACACACAGTCT 59.064 45.455 0.00 0.00 0.00 3.24
4374 4537 2.538939 GCGTCTTTCCAAACACACAGTC 60.539 50.000 0.00 0.00 0.00 3.51
4375 4538 1.400494 GCGTCTTTCCAAACACACAGT 59.600 47.619 0.00 0.00 0.00 3.55
4377 4540 1.454201 TGCGTCTTTCCAAACACACA 58.546 45.000 0.00 0.00 0.00 3.72
4378 4541 2.553079 TTGCGTCTTTCCAAACACAC 57.447 45.000 0.00 0.00 0.00 3.82
4379 4542 3.577649 TTTTGCGTCTTTCCAAACACA 57.422 38.095 0.00 0.00 31.30 3.72
4380 4543 5.516090 TCTATTTTGCGTCTTTCCAAACAC 58.484 37.500 0.00 0.00 31.30 3.32
4382 4545 6.861055 TGATTCTATTTTGCGTCTTTCCAAAC 59.139 34.615 0.00 0.00 31.30 2.93
4383 4546 6.861055 GTGATTCTATTTTGCGTCTTTCCAAA 59.139 34.615 0.00 0.00 0.00 3.28
4384 4547 6.206634 AGTGATTCTATTTTGCGTCTTTCCAA 59.793 34.615 0.00 0.00 0.00 3.53
4386 4549 6.183309 AGTGATTCTATTTTGCGTCTTTCC 57.817 37.500 0.00 0.00 0.00 3.13
4387 4550 8.443937 AGTTAGTGATTCTATTTTGCGTCTTTC 58.556 33.333 0.00 0.00 0.00 2.62
4388 4551 8.230486 CAGTTAGTGATTCTATTTTGCGTCTTT 58.770 33.333 0.00 0.00 0.00 2.52
4389 4552 7.624344 GCAGTTAGTGATTCTATTTTGCGTCTT 60.624 37.037 0.00 0.00 0.00 3.01
4390 4553 6.183360 GCAGTTAGTGATTCTATTTTGCGTCT 60.183 38.462 0.00 0.00 0.00 4.18
4391 4554 5.960105 GCAGTTAGTGATTCTATTTTGCGTC 59.040 40.000 0.00 0.00 0.00 5.19
4392 4555 5.163754 GGCAGTTAGTGATTCTATTTTGCGT 60.164 40.000 0.00 0.00 33.98 5.24
4393 4556 5.163764 TGGCAGTTAGTGATTCTATTTTGCG 60.164 40.000 0.00 0.00 33.98 4.85
4394 4557 6.194796 TGGCAGTTAGTGATTCTATTTTGC 57.805 37.500 0.00 0.00 33.21 3.68
4397 4560 8.624776 GCTATTTGGCAGTTAGTGATTCTATTT 58.375 33.333 7.38 0.00 0.00 1.40
4399 4562 6.712547 GGCTATTTGGCAGTTAGTGATTCTAT 59.287 38.462 7.38 0.00 41.37 1.98
4400 4563 6.055588 GGCTATTTGGCAGTTAGTGATTCTA 58.944 40.000 7.38 0.00 41.37 2.10
4401 4564 4.884164 GGCTATTTGGCAGTTAGTGATTCT 59.116 41.667 7.38 0.00 41.37 2.40
4403 4654 3.954258 GGGCTATTTGGCAGTTAGTGATT 59.046 43.478 7.38 0.00 43.83 2.57
4413 4664 1.133823 ACGATCATGGGCTATTTGGCA 60.134 47.619 0.00 0.00 43.83 4.92
4436 4687 1.152860 TCTCCCGCAGTGGCAAAAA 60.153 52.632 0.00 0.00 41.24 1.94
4437 4688 1.600636 CTCTCCCGCAGTGGCAAAA 60.601 57.895 0.00 0.00 41.24 2.44
4438 4689 2.032528 CTCTCCCGCAGTGGCAAA 59.967 61.111 0.00 0.00 41.24 3.68
4439 4690 4.704833 GCTCTCCCGCAGTGGCAA 62.705 66.667 0.00 0.00 41.24 4.52
4456 4707 1.815421 CGGAGGTGAGCCAATTCGG 60.815 63.158 0.00 0.00 37.19 4.30
4457 4708 2.464459 GCGGAGGTGAGCCAATTCG 61.464 63.158 0.00 0.00 37.19 3.34
4458 4709 1.372087 CTGCGGAGGTGAGCCAATTC 61.372 60.000 0.00 0.00 37.19 2.17
4459 4710 1.377725 CTGCGGAGGTGAGCCAATT 60.378 57.895 0.00 0.00 37.19 2.32
4460 4711 2.270205 CTGCGGAGGTGAGCCAAT 59.730 61.111 0.00 0.00 37.19 3.16
4461 4712 4.020617 CCTGCGGAGGTGAGCCAA 62.021 66.667 16.00 0.00 37.19 4.52
4464 4715 4.704833 TTGCCTGCGGAGGTGAGC 62.705 66.667 24.99 10.39 42.15 4.26
4465 4716 2.435586 CTTGCCTGCGGAGGTGAG 60.436 66.667 24.99 17.65 42.15 3.51
4467 4718 4.711949 AGCTTGCCTGCGGAGGTG 62.712 66.667 24.99 15.42 42.15 4.00
4468 4719 2.983725 AAAAGCTTGCCTGCGGAGGT 62.984 55.000 24.99 0.16 42.15 3.85
4469 4720 1.809567 AAAAAGCTTGCCTGCGGAGG 61.810 55.000 20.23 20.23 43.19 4.30
4472 4723 0.665369 CAGAAAAAGCTTGCCTGCGG 60.665 55.000 0.00 0.00 38.13 5.69
4473 4724 0.665369 CCAGAAAAAGCTTGCCTGCG 60.665 55.000 0.00 0.00 38.13 5.18
4474 4725 0.947660 GCCAGAAAAAGCTTGCCTGC 60.948 55.000 0.00 0.00 0.00 4.85
4475 4726 0.665369 CGCCAGAAAAAGCTTGCCTG 60.665 55.000 0.00 7.82 0.00 4.85
4476 4727 1.662044 CGCCAGAAAAAGCTTGCCT 59.338 52.632 0.00 0.00 0.00 4.75
4477 4728 1.373371 CCGCCAGAAAAAGCTTGCC 60.373 57.895 0.00 0.00 0.00 4.52
4478 4729 0.249447 AACCGCCAGAAAAAGCTTGC 60.249 50.000 0.00 0.00 0.00 4.01
4482 4733 2.672714 CCTTTAACCGCCAGAAAAAGC 58.327 47.619 0.00 0.00 0.00 3.51
4483 4734 2.296190 AGCCTTTAACCGCCAGAAAAAG 59.704 45.455 0.00 0.00 0.00 2.27
4485 4736 1.989706 AGCCTTTAACCGCCAGAAAA 58.010 45.000 0.00 0.00 0.00 2.29
4486 4737 2.863132 TAGCCTTTAACCGCCAGAAA 57.137 45.000 0.00 0.00 0.00 2.52
4487 4738 2.863132 TTAGCCTTTAACCGCCAGAA 57.137 45.000 0.00 0.00 0.00 3.02
4489 4740 3.769536 CAATTTAGCCTTTAACCGCCAG 58.230 45.455 0.00 0.00 0.00 4.85
4490 4741 2.094442 GCAATTTAGCCTTTAACCGCCA 60.094 45.455 0.00 0.00 0.00 5.69
4502 4753 5.125097 AGCTAGCATATGATGGCAATTTAGC 59.875 40.000 27.75 14.59 40.49 3.09
4503 4754 6.754702 AGCTAGCATATGATGGCAATTTAG 57.245 37.500 27.75 5.52 40.49 1.85
4504 4755 7.528996 AAAGCTAGCATATGATGGCAATTTA 57.471 32.000 27.75 0.00 40.49 1.40
4507 4758 7.713734 AATAAAGCTAGCATATGATGGCAAT 57.286 32.000 27.75 18.72 40.49 3.56
4510 4761 7.718753 AGGATAATAAAGCTAGCATATGATGGC 59.281 37.037 20.31 20.31 38.24 4.40
4556 4807 2.512515 GCTCCTAGCGTTGCCTGG 60.513 66.667 0.00 0.00 0.00 4.45
4565 4816 2.515757 GCAAGGGCAGCTCCTAGC 60.516 66.667 3.09 0.00 42.84 3.42
4566 4817 1.050988 TAGGCAAGGGCAGCTCCTAG 61.051 60.000 3.09 0.00 43.71 3.02
4568 4819 1.919600 CTTAGGCAAGGGCAGCTCCT 61.920 60.000 0.00 0.00 43.71 3.69
4572 4823 0.821301 GGATCTTAGGCAAGGGCAGC 60.821 60.000 0.00 0.00 43.71 5.25
4573 4824 0.548031 TGGATCTTAGGCAAGGGCAG 59.452 55.000 0.00 0.00 43.71 4.85
4574 4825 0.998928 TTGGATCTTAGGCAAGGGCA 59.001 50.000 0.00 0.00 43.71 5.36
4575 4826 1.751351 GTTTGGATCTTAGGCAAGGGC 59.249 52.381 0.00 0.00 40.13 5.19
4576 4827 2.017049 CGTTTGGATCTTAGGCAAGGG 58.983 52.381 0.00 0.00 32.22 3.95
4577 4828 1.401905 GCGTTTGGATCTTAGGCAAGG 59.598 52.381 0.00 0.00 32.22 3.61
4578 4829 2.083774 TGCGTTTGGATCTTAGGCAAG 58.916 47.619 0.00 0.00 30.69 4.01
4579 4830 1.810151 GTGCGTTTGGATCTTAGGCAA 59.190 47.619 9.84 0.00 34.88 4.52
4580 4831 1.448985 GTGCGTTTGGATCTTAGGCA 58.551 50.000 0.00 0.00 0.00 4.75
4582 4833 1.065418 AGGGTGCGTTTGGATCTTAGG 60.065 52.381 0.00 0.00 0.00 2.69
4584 4835 3.985019 TTAGGGTGCGTTTGGATCTTA 57.015 42.857 0.00 0.00 0.00 2.10
4589 4840 2.570415 TCATTTAGGGTGCGTTTGGA 57.430 45.000 0.00 0.00 0.00 3.53
4590 4841 3.016736 AGATCATTTAGGGTGCGTTTGG 58.983 45.455 0.00 0.00 0.00 3.28
4592 4843 4.192317 GAGAGATCATTTAGGGTGCGTTT 58.808 43.478 0.00 0.00 0.00 3.60
4593 4844 3.432326 GGAGAGATCATTTAGGGTGCGTT 60.432 47.826 0.00 0.00 0.00 4.84
4594 4845 2.103263 GGAGAGATCATTTAGGGTGCGT 59.897 50.000 0.00 0.00 0.00 5.24
4595 4846 2.366916 AGGAGAGATCATTTAGGGTGCG 59.633 50.000 0.00 0.00 0.00 5.34
4596 4847 3.389329 TCAGGAGAGATCATTTAGGGTGC 59.611 47.826 0.00 0.00 0.00 5.01
4598 4849 6.642733 TTTTCAGGAGAGATCATTTAGGGT 57.357 37.500 0.00 0.00 0.00 4.34
4599 4850 8.530804 AAATTTTCAGGAGAGATCATTTAGGG 57.469 34.615 0.00 0.00 0.00 3.53
4658 4909 7.537715 TGCTACATTCCATTGAAAACATAGTG 58.462 34.615 0.00 0.00 33.32 2.74
4789 5279 3.508793 CAGGGGCAGCATCCAATTATAAG 59.491 47.826 6.77 0.00 0.00 1.73
4939 5430 5.065731 GCTTTGCACTAGTATCAAGATTGCT 59.934 40.000 0.00 0.54 0.00 3.91
5067 5563 7.814642 AGATTCTTGTGCTTCTTTGTATTGAG 58.185 34.615 0.00 0.00 0.00 3.02
5081 5577 2.977405 ACGCAAAGAGATTCTTGTGC 57.023 45.000 12.08 12.08 36.71 4.57
5083 5579 5.296780 TGAGAAAACGCAAAGAGATTCTTGT 59.703 36.000 0.00 0.00 36.71 3.16
5323 5819 3.254166 GGCACAGCTCAATATAACCCATG 59.746 47.826 0.00 0.00 0.00 3.66
5854 6362 6.316140 CGATTTCCTGTGATGATAGGTCAAAA 59.684 38.462 0.00 0.00 38.01 2.44
5881 6389 0.673985 TGGGATAACGGATCAGCTCG 59.326 55.000 0.00 0.00 36.12 5.03
5914 6422 1.143889 TGGTGGATGCACTGGTGTAAA 59.856 47.619 17.44 0.00 0.00 2.01
6230 6738 4.916041 ATGAGACTGGAAGAATTGTCCA 57.084 40.909 7.15 7.15 43.03 4.02
6519 7027 6.563939 CGCTATATACACAATTCGCATGTTGT 60.564 38.462 0.00 0.00 39.00 3.32
6966 7474 6.260936 GTCCATACCCTGAATGTGTATTTCTG 59.739 42.308 0.00 0.00 0.00 3.02
6986 7494 3.445096 GCCTCAAAGTTTGCTATGTCCAT 59.555 43.478 10.90 0.00 0.00 3.41
7093 7601 1.174712 ACCTTGCATGCTTCGTTGCT 61.175 50.000 20.33 0.00 39.60 3.91
7098 7606 2.855180 CAGTAAACCTTGCATGCTTCG 58.145 47.619 20.33 8.05 0.00 3.79
7124 7632 4.279169 AGCATTTGAGTATGTGCACAAGTT 59.721 37.500 25.72 10.43 39.94 2.66
7133 7641 5.048504 CACAACCTTCAGCATTTGAGTATGT 60.049 40.000 0.00 0.00 37.07 2.29
7207 7715 3.609103 AGCGTTTCTTCATTGACACAC 57.391 42.857 0.00 0.00 0.00 3.82
7208 7716 3.376859 ACAAGCGTTTCTTCATTGACACA 59.623 39.130 0.00 0.00 31.27 3.72
7708 8419 4.141711 TGACCTATTCCCTGCAGATTGTAC 60.142 45.833 17.39 0.00 0.00 2.90
7924 8635 4.442753 GCTAGAATCTCCAGGAGACCTTTG 60.443 50.000 22.34 16.41 41.76 2.77
8203 8914 0.908198 CCTTAAGAGCCAGGCTGAGT 59.092 55.000 22.26 5.97 39.88 3.41
8338 9058 7.333323 TCATCTCAGCAAGATCAAAGATGTTA 58.667 34.615 9.30 0.00 43.13 2.41
8545 9265 1.440618 TAACTGGCCCAACCTCAGAA 58.559 50.000 0.00 0.00 40.22 3.02
8564 9287 1.978580 CTTAGGATACCTCGGGGCATT 59.021 52.381 0.00 0.00 34.61 3.56
8912 9636 6.470278 TGACATGCAAGAATATAGATCTGGG 58.530 40.000 5.18 0.00 0.00 4.45
9046 9772 8.377799 ACACTATATCCATGCACTATCATTCAA 58.622 33.333 0.00 0.00 0.00 2.69
9078 9804 1.913778 ACATTGCTCATCCAACAGCA 58.086 45.000 0.00 0.00 44.02 4.41
9102 9828 2.355756 GTGCAGACGCCATGTATCAAAT 59.644 45.455 0.00 0.00 37.32 2.32
9210 9961 9.463443 CCTTGTTAACCTGTTCAAAAATAAGAG 57.537 33.333 2.48 0.00 0.00 2.85
9216 9967 7.340743 TCAGATCCTTGTTAACCTGTTCAAAAA 59.659 33.333 2.48 0.00 0.00 1.94
9217 9968 6.831353 TCAGATCCTTGTTAACCTGTTCAAAA 59.169 34.615 2.48 0.00 0.00 2.44
9311 10062 5.819991 TGGAGAGAGAAAATAGTTGGCAAT 58.180 37.500 1.92 0.00 0.00 3.56
9334 10087 8.990163 TCCAAAATAAAGAGGTGACTACTTTT 57.010 30.769 11.10 0.00 44.43 2.27
9364 10117 3.934579 CACACTGTGTGCATTCTGCTATA 59.065 43.478 26.02 0.00 45.31 1.31
9391 10144 4.039245 CACTCCCTCTTGACTGTTGACTAA 59.961 45.833 0.00 0.00 0.00 2.24
9392 10145 3.574396 CACTCCCTCTTGACTGTTGACTA 59.426 47.826 0.00 0.00 0.00 2.59
9454 10207 8.822805 TGACCATTAGATAAACTTACCAGAGTT 58.177 33.333 0.00 0.00 41.44 3.01
9469 10222 9.793252 CTTTCGAAATTTTCATGACCATTAGAT 57.207 29.630 11.70 0.00 0.00 1.98
9590 10348 5.112220 TGACAAGATTCAGTTGTGCATTC 57.888 39.130 0.00 0.00 38.26 2.67
9711 10471 8.754991 ACAGCTAGTAGTGTATTCTGTATTCT 57.245 34.615 0.00 0.00 32.29 2.40
9712 10472 8.842280 AGACAGCTAGTAGTGTATTCTGTATTC 58.158 37.037 6.02 0.00 33.97 1.75
9713 10473 8.754991 AGACAGCTAGTAGTGTATTCTGTATT 57.245 34.615 6.02 0.00 33.97 1.89
9714 10474 8.754991 AAGACAGCTAGTAGTGTATTCTGTAT 57.245 34.615 6.02 1.65 33.97 2.29
9715 10475 8.577048 AAAGACAGCTAGTAGTGTATTCTGTA 57.423 34.615 10.89 0.00 33.97 2.74
9716 10476 7.469537 AAAGACAGCTAGTAGTGTATTCTGT 57.530 36.000 10.89 8.59 36.19 3.41
9732 10492 9.899226 ACTTTCAAACATTCTATAAAAGACAGC 57.101 29.630 0.00 0.00 32.51 4.40
9773 10533 8.673711 CGATGAATTAAGTACTTCCAAATTCCA 58.326 33.333 25.55 18.57 36.28 3.53
9774 10534 7.644157 GCGATGAATTAAGTACTTCCAAATTCC 59.356 37.037 25.55 16.61 36.28 3.01
9775 10535 8.181573 TGCGATGAATTAAGTACTTCCAAATTC 58.818 33.333 23.60 23.60 37.17 2.17
9776 10536 8.050778 TGCGATGAATTAAGTACTTCCAAATT 57.949 30.769 12.39 12.48 0.00 1.82
9777 10537 7.624360 TGCGATGAATTAAGTACTTCCAAAT 57.376 32.000 12.39 3.78 0.00 2.32
9778 10538 7.441890 TTGCGATGAATTAAGTACTTCCAAA 57.558 32.000 12.39 1.15 0.00 3.28
9779 10539 7.441890 TTTGCGATGAATTAAGTACTTCCAA 57.558 32.000 12.39 1.96 0.00 3.53
9780 10540 7.441890 TTTTGCGATGAATTAAGTACTTCCA 57.558 32.000 12.39 6.86 0.00 3.53
9781 10541 7.968405 ACATTTTGCGATGAATTAAGTACTTCC 59.032 33.333 12.39 1.11 0.00 3.46
9782 10542 8.895932 ACATTTTGCGATGAATTAAGTACTTC 57.104 30.769 12.39 0.00 0.00 3.01
9784 10544 9.988350 CTTACATTTTGCGATGAATTAAGTACT 57.012 29.630 0.00 0.00 0.00 2.73
9785 10545 9.221775 CCTTACATTTTGCGATGAATTAAGTAC 57.778 33.333 0.00 0.00 0.00 2.73
9786 10546 7.913297 GCCTTACATTTTGCGATGAATTAAGTA 59.087 33.333 0.00 0.00 0.00 2.24
9787 10547 6.751888 GCCTTACATTTTGCGATGAATTAAGT 59.248 34.615 0.00 0.00 0.00 2.24
9788 10548 7.153478 GCCTTACATTTTGCGATGAATTAAG 57.847 36.000 0.00 1.08 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.