Multiple sequence alignment - TraesCS7A01G238400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G238400 chr7A 100.000 3577 0 0 1 3577 211410859 211414435 0.000000e+00 6606.0
1 TraesCS7A01G238400 chr7D 94.644 1867 80 14 1372 3236 156525318 156527166 0.000000e+00 2876.0
2 TraesCS7A01G238400 chr7D 91.318 933 56 4 1 931 156522485 156523394 0.000000e+00 1251.0
3 TraesCS7A01G238400 chr7D 87.367 1037 115 10 1393 2415 156455210 156456244 0.000000e+00 1175.0
4 TraesCS7A01G238400 chr7D 90.909 429 18 8 960 1373 156524814 156525236 1.120000e-154 556.0
5 TraesCS7A01G238400 chr7B 91.853 1927 122 22 974 2880 118890868 118892779 0.000000e+00 2656.0
6 TraesCS7A01G238400 chr7B 83.744 1298 142 32 1148 2414 118821016 118822275 0.000000e+00 1164.0
7 TraesCS7A01G238400 chr7B 96.671 691 19 3 2889 3577 118892868 118893556 0.000000e+00 1146.0
8 TraesCS7A01G238400 chr7B 90.909 385 31 4 90 472 118870152 118870534 6.850000e-142 514.0
9 TraesCS7A01G238400 chr7B 85.088 456 48 14 466 913 118890409 118890852 7.040000e-122 448.0
10 TraesCS7A01G238400 chr7B 95.238 84 4 0 9 92 118823038 118823121 2.240000e-27 134.0
11 TraesCS7A01G238400 chr6B 87.329 805 102 0 1516 2320 117840423 117841227 0.000000e+00 922.0
12 TraesCS7A01G238400 chr6D 87.313 804 102 0 1516 2319 53681330 53680527 0.000000e+00 920.0
13 TraesCS7A01G238400 chr6D 86.708 805 107 0 1516 2320 53775174 53774370 0.000000e+00 894.0
14 TraesCS7A01G238400 chrUn 87.081 805 104 0 1516 2320 381573742 381572938 0.000000e+00 911.0
15 TraesCS7A01G238400 chrUn 94.872 39 2 0 3023 3061 363438071 363438033 1.070000e-05 62.1
16 TraesCS7A01G238400 chr6A 86.816 804 106 0 1516 2319 61408742 61409545 0.000000e+00 898.0
17 TraesCS7A01G238400 chr2B 95.349 43 1 1 3020 3061 172983090 172983132 2.300000e-07 67.6
18 TraesCS7A01G238400 chr4D 94.872 39 2 0 3023 3061 169117040 169117078 1.070000e-05 62.1
19 TraesCS7A01G238400 chr4B 94.872 39 2 0 3023 3061 7516128 7516166 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G238400 chr7A 211410859 211414435 3576 False 6606.000000 6606 100.000000 1 3577 1 chr7A.!!$F1 3576
1 TraesCS7A01G238400 chr7D 156522485 156527166 4681 False 1561.000000 2876 92.290333 1 3236 3 chr7D.!!$F2 3235
2 TraesCS7A01G238400 chr7D 156455210 156456244 1034 False 1175.000000 1175 87.367000 1393 2415 1 chr7D.!!$F1 1022
3 TraesCS7A01G238400 chr7B 118890409 118893556 3147 False 1416.666667 2656 91.204000 466 3577 3 chr7B.!!$F3 3111
4 TraesCS7A01G238400 chr7B 118821016 118823121 2105 False 649.000000 1164 89.491000 9 2414 2 chr7B.!!$F2 2405
5 TraesCS7A01G238400 chr6B 117840423 117841227 804 False 922.000000 922 87.329000 1516 2320 1 chr6B.!!$F1 804
6 TraesCS7A01G238400 chr6D 53680527 53681330 803 True 920.000000 920 87.313000 1516 2319 1 chr6D.!!$R1 803
7 TraesCS7A01G238400 chr6D 53774370 53775174 804 True 894.000000 894 86.708000 1516 2320 1 chr6D.!!$R2 804
8 TraesCS7A01G238400 chrUn 381572938 381573742 804 True 911.000000 911 87.081000 1516 2320 1 chrUn.!!$R2 804
9 TraesCS7A01G238400 chr6A 61408742 61409545 803 False 898.000000 898 86.816000 1516 2319 1 chr6A.!!$F1 803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 873 0.033405 TCTGGTACCTCCCTCTTCCG 60.033 60.0 14.36 0.0 34.77 4.30 F
1053 2472 0.098552 TGTCGCAGTTGCACTTTGTG 59.901 50.0 4.84 0.0 42.21 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 3608 0.322187 CCGGGGTAAAGTGGGTCAAG 60.322 60.000 0.00 0.0 0.00 3.02 R
2691 4310 2.766263 ACCTATCGTGCAAAGATCAGGA 59.234 45.455 21.62 0.0 36.22 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.471617 CCCATGGTGAGCTAGGAAGG 59.528 60.000 11.73 0.00 0.00 3.46
46 47 1.499870 GAGCTAGGAAGGGAGGGAGTA 59.500 57.143 0.00 0.00 0.00 2.59
92 93 5.757320 CCATCTGGTCTCTTCATCATGTTAC 59.243 44.000 0.00 0.00 0.00 2.50
117 118 8.612145 ACCCTATAGAATTAATTATCCCCACAC 58.388 37.037 0.00 0.00 0.00 3.82
194 195 7.665690 TGTAAGCAAAAATTCCTTGAGCATAA 58.334 30.769 4.78 0.00 0.00 1.90
195 196 7.598493 TGTAAGCAAAAATTCCTTGAGCATAAC 59.402 33.333 4.78 0.00 0.00 1.89
212 215 4.867608 GCATAACGTTTGCCATACCAAATT 59.132 37.500 18.64 0.00 37.09 1.82
220 223 6.346999 CGTTTGCCATACCAAATTGTTTAACC 60.347 38.462 0.00 0.00 37.09 2.85
231 234 6.204301 CCAAATTGTTTAACCAACATGCATGA 59.796 34.615 32.75 6.55 45.17 3.07
261 264 8.506168 TTCCATTTATGATTCAAGTGTACCTC 57.494 34.615 0.00 0.00 0.00 3.85
271 274 6.479972 TTCAAGTGTACCTCGATCCATAAT 57.520 37.500 0.00 0.00 0.00 1.28
273 276 5.596772 TCAAGTGTACCTCGATCCATAATGA 59.403 40.000 0.00 0.00 0.00 2.57
286 289 4.539726 TCCATAATGAGGCTCTGCAAAAT 58.460 39.130 16.72 0.00 0.00 1.82
330 333 8.474831 GGACTAACCTTATTGGCATATTTTTGT 58.525 33.333 0.00 0.00 40.22 2.83
363 366 4.016444 GAGATCATACCTCCTAGCCTCTG 58.984 52.174 0.00 0.00 0.00 3.35
390 393 3.366273 CGTGGATGCACAAAGTTATGCTT 60.366 43.478 18.05 6.81 42.55 3.91
392 395 4.990426 GTGGATGCACAAAGTTATGCTTTT 59.010 37.500 13.07 0.04 44.41 2.27
393 396 5.466393 GTGGATGCACAAAGTTATGCTTTTT 59.534 36.000 13.07 0.00 44.41 1.94
394 397 6.644592 GTGGATGCACAAAGTTATGCTTTTTA 59.355 34.615 13.07 0.00 44.41 1.52
395 398 7.331687 GTGGATGCACAAAGTTATGCTTTTTAT 59.668 33.333 13.07 0.00 44.41 1.40
396 399 7.877097 TGGATGCACAAAGTTATGCTTTTTATT 59.123 29.630 12.00 0.00 44.41 1.40
397 400 8.720562 GGATGCACAAAGTTATGCTTTTTATTT 58.279 29.630 12.00 0.00 44.41 1.40
419 422 7.994425 TTTAAGTTGATACAAGCCAATGAGA 57.006 32.000 0.00 0.00 0.00 3.27
451 454 9.553418 TCATTGACAAACATATTACATTGAACG 57.447 29.630 0.00 0.00 0.00 3.95
655 658 6.091577 GTCGTCACTAGAGTATCATCGATCAT 59.908 42.308 0.00 0.00 37.82 2.45
665 668 5.993441 AGTATCATCGATCATGACATGCAAA 59.007 36.000 10.76 0.00 44.70 3.68
674 677 7.975058 TCGATCATGACATGCAAATTTTTGTAT 59.025 29.630 10.76 3.21 42.88 2.29
701 704 4.060205 TCTAAGCTCGGTAAACAAACACC 58.940 43.478 0.00 0.00 0.00 4.16
741 745 0.454196 ACGGTGATATTTTTGCGGGC 59.546 50.000 0.00 0.00 0.00 6.13
778 784 1.999735 TGCAATCGACCGAGAATCAAC 59.000 47.619 0.00 0.00 33.17 3.18
841 855 2.166664 CTGCTCCTACCCACACTTAGTC 59.833 54.545 0.00 0.00 0.00 2.59
846 860 3.334581 TCCTACCCACACTTAGTCTGGTA 59.665 47.826 5.96 5.27 34.91 3.25
858 872 1.007359 AGTCTGGTACCTCCCTCTTCC 59.993 57.143 14.36 0.00 34.77 3.46
859 873 0.033405 TCTGGTACCTCCCTCTTCCG 60.033 60.000 14.36 0.00 34.77 4.30
894 908 7.130099 TGTTTGTCCTCTCCTACCTATCAATA 58.870 38.462 0.00 0.00 0.00 1.90
989 2399 7.337942 CGGGGAGTATAAAGGTCGTTACTATAT 59.662 40.741 0.00 0.00 0.00 0.86
1052 2471 0.378257 CTGTCGCAGTTGCACTTTGT 59.622 50.000 4.84 0.00 42.21 2.83
1053 2472 0.098552 TGTCGCAGTTGCACTTTGTG 59.901 50.000 4.84 0.00 42.21 3.33
1075 2494 3.009033 GCCATTGTATATGCCCAGACCTA 59.991 47.826 0.00 0.00 0.00 3.08
1145 2564 8.359642 CCAGTCAAAGAAAAACATGAATTAGGA 58.640 33.333 0.00 0.00 0.00 2.94
1146 2565 9.403110 CAGTCAAAGAAAAACATGAATTAGGAG 57.597 33.333 0.00 0.00 0.00 3.69
1147 2566 8.579863 AGTCAAAGAAAAACATGAATTAGGAGG 58.420 33.333 0.00 0.00 0.00 4.30
1179 2600 6.696148 GGATCAGGTAACATAGTTTAGTCACG 59.304 42.308 0.00 0.00 41.41 4.35
1304 2728 1.682702 CCATAGCCACAAGTGCATCCA 60.683 52.381 0.00 0.00 0.00 3.41
1386 2899 2.202892 GCTAGCGTACACCAGGCC 60.203 66.667 0.00 0.00 38.87 5.19
1387 2900 2.722201 GCTAGCGTACACCAGGCCT 61.722 63.158 0.00 0.00 38.87 5.19
1388 2901 1.437986 CTAGCGTACACCAGGCCTC 59.562 63.158 0.00 0.00 38.87 4.70
1389 2902 1.000019 TAGCGTACACCAGGCCTCT 60.000 57.895 0.00 0.00 38.87 3.69
1390 2903 1.320344 TAGCGTACACCAGGCCTCTG 61.320 60.000 0.00 3.35 38.87 3.35
1464 2981 3.773667 TCTGTTCTCTCAAGCCATCTCAT 59.226 43.478 0.00 0.00 0.00 2.90
1469 2993 3.567585 TCTCTCAAGCCATCTCATACTCG 59.432 47.826 0.00 0.00 0.00 4.18
1478 3004 0.847373 TCTCATACTCGAGCCCCTCT 59.153 55.000 13.61 0.00 32.75 3.69
1490 3016 0.178990 GCCCCTCTCTCTCTCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
1543 3079 1.200760 CCACCACCATGTCCCTCTCA 61.201 60.000 0.00 0.00 0.00 3.27
1590 3126 3.745975 GTGAAGAATGTGTCATTGTCGGA 59.254 43.478 0.00 0.00 0.00 4.55
1753 3289 3.260884 GTGAGTTTCCTGGTGACTATGGA 59.739 47.826 5.04 0.00 0.00 3.41
1762 3298 2.897326 TGGTGACTATGGATGGGATACG 59.103 50.000 0.00 0.00 37.60 3.06
1792 3328 2.593956 GGCTGACCCCGAGACCTTT 61.594 63.158 0.00 0.00 0.00 3.11
1819 3355 1.194781 ACCGTGAGCTGGAGGTGATT 61.195 55.000 0.00 0.00 35.36 2.57
2360 3896 0.463295 CAAGCTGCGGGATGATCTGT 60.463 55.000 0.00 0.00 0.00 3.41
2431 3967 7.819644 TGTTTGATTCATCGATGTTCATCTTT 58.180 30.769 24.09 2.69 0.00 2.52
2491 4096 6.569418 CGCATCTAGCTACTTGTAGTGATCAT 60.569 42.308 0.00 0.00 42.61 2.45
2503 4108 6.053632 TGTAGTGATCATCTGGACAATTGT 57.946 37.500 11.78 11.78 0.00 2.71
2555 4160 3.181526 GCTTCGCTAGACAATGACTTGTG 60.182 47.826 0.00 2.15 45.57 3.33
2605 4222 1.269012 AATTTGGCACTCCCACCATG 58.731 50.000 0.00 0.00 45.34 3.66
2676 4295 8.020819 TCTTATAAAATGTTTGAAACTGCTCCG 58.979 33.333 9.69 0.00 0.00 4.63
2691 4310 2.233676 TGCTCCGCGGATGATACATATT 59.766 45.455 31.19 0.00 0.00 1.28
2810 4429 0.536724 TCCTGTCGTGTGCATAGCAT 59.463 50.000 0.00 0.00 41.91 3.79
2848 4467 4.227197 CAGAGGGAGTATATGGTTGAGGT 58.773 47.826 0.00 0.00 0.00 3.85
2880 4502 6.254373 GTCGTAGGCCAAAATACTTGTACTAC 59.746 42.308 5.01 0.00 0.00 2.73
2882 4504 7.339212 TCGTAGGCCAAAATACTTGTACTACTA 59.661 37.037 5.01 0.00 30.93 1.82
2883 4505 7.975616 CGTAGGCCAAAATACTTGTACTACTAA 59.024 37.037 5.01 0.00 30.93 2.24
2884 4506 9.828039 GTAGGCCAAAATACTTGTACTACTAAT 57.172 33.333 5.01 0.00 30.70 1.73
3038 4746 4.497340 GGAGATTGTTCAAAACTGCGACAA 60.497 41.667 0.00 0.00 35.04 3.18
3156 4864 2.422127 GCTAATGGAAAGCCTTAACGCA 59.578 45.455 0.00 0.00 33.73 5.24
3338 5046 1.594331 AGAAGAAAGGCACAACCGAC 58.406 50.000 0.00 0.00 46.52 4.79
3383 5091 1.742308 TTTGAAGCTGTCCTACCCCT 58.258 50.000 0.00 0.00 0.00 4.79
3512 5220 2.742954 CATGATGCATGTGTACGTGG 57.257 50.000 2.46 0.00 37.12 4.94
3573 5283 9.081997 GTCACAATTACAATCAAGAAAACACAA 57.918 29.630 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.471617 CCTTCCTAGCTCACCATGGG 59.528 60.000 18.09 5.22 0.00 4.00
37 38 3.967987 ACCATTGACTATGTACTCCCTCC 59.032 47.826 0.00 0.00 31.99 4.30
75 76 8.410673 TCTATAGGGTAACATGATGAAGAGAC 57.589 38.462 0.00 0.00 39.74 3.36
92 93 8.053355 GGTGTGGGGATAATTAATTCTATAGGG 58.947 40.741 3.39 0.00 0.00 3.53
166 167 6.646240 TGCTCAAGGAATTTTTGCTTACAATC 59.354 34.615 0.00 0.00 39.45 2.67
194 195 4.329462 AACAATTTGGTATGGCAAACGT 57.671 36.364 0.78 0.00 0.00 3.99
195 196 6.346999 GGTTAAACAATTTGGTATGGCAAACG 60.347 38.462 0.78 0.00 0.00 3.60
220 223 9.353999 CATAAATGGAATATCTCATGCATGTTG 57.646 33.333 25.43 18.71 0.00 3.33
261 264 2.289257 TGCAGAGCCTCATTATGGATCG 60.289 50.000 0.00 0.00 43.98 3.69
271 274 3.144657 TGAAGATTTTGCAGAGCCTCA 57.855 42.857 0.00 0.00 0.00 3.86
273 276 4.282703 ACATTTGAAGATTTTGCAGAGCCT 59.717 37.500 0.00 0.00 0.00 4.58
330 333 7.358263 AGGAGGTATGATCTCAGTTAAAGAGA 58.642 38.462 10.34 10.34 45.38 3.10
340 343 3.660177 AGAGGCTAGGAGGTATGATCTCA 59.340 47.826 0.00 0.00 33.18 3.27
393 396 9.679661 TCTCATTGGCTTGTATCAACTTAAATA 57.320 29.630 0.00 0.00 0.00 1.40
394 397 8.579850 TCTCATTGGCTTGTATCAACTTAAAT 57.420 30.769 0.00 0.00 0.00 1.40
395 398 7.994425 TCTCATTGGCTTGTATCAACTTAAA 57.006 32.000 0.00 0.00 0.00 1.52
396 399 7.828717 TGATCTCATTGGCTTGTATCAACTTAA 59.171 33.333 0.00 0.00 0.00 1.85
397 400 7.337938 TGATCTCATTGGCTTGTATCAACTTA 58.662 34.615 0.00 0.00 0.00 2.24
398 401 6.182627 TGATCTCATTGGCTTGTATCAACTT 58.817 36.000 0.00 0.00 0.00 2.66
399 402 5.748402 TGATCTCATTGGCTTGTATCAACT 58.252 37.500 0.00 0.00 0.00 3.16
400 403 6.441093 TTGATCTCATTGGCTTGTATCAAC 57.559 37.500 0.00 0.00 31.45 3.18
401 404 7.339976 TGATTTGATCTCATTGGCTTGTATCAA 59.660 33.333 0.00 12.46 32.97 2.57
402 405 6.829811 TGATTTGATCTCATTGGCTTGTATCA 59.170 34.615 0.00 0.00 0.00 2.15
403 406 7.268199 TGATTTGATCTCATTGGCTTGTATC 57.732 36.000 0.00 0.00 0.00 2.24
404 407 7.834881 ATGATTTGATCTCATTGGCTTGTAT 57.165 32.000 0.00 0.00 28.98 2.29
405 408 7.649533 AATGATTTGATCTCATTGGCTTGTA 57.350 32.000 7.64 0.00 40.81 2.41
406 409 6.540438 AATGATTTGATCTCATTGGCTTGT 57.460 33.333 7.64 0.00 40.81 3.16
435 438 6.247727 TGTTGTGCGTTCAATGTAATATGT 57.752 33.333 0.00 0.00 0.00 2.29
451 454 0.749649 TGGTTCACCCATTGTTGTGC 59.250 50.000 0.00 0.00 38.72 4.57
592 595 3.059529 TCTCAGTCGATCGAGAATTAGCG 60.060 47.826 20.09 0.66 35.37 4.26
688 691 6.476053 TCTTTAAATTGCGGTGTTTGTTTACC 59.524 34.615 0.00 0.00 0.00 2.85
701 704 5.072169 CGTGCCATTTTTCTTTAAATTGCG 58.928 37.500 0.00 0.00 38.37 4.85
741 745 6.581919 TCGATTGCACAAATTTGTTCATACAG 59.418 34.615 21.56 14.13 39.91 2.74
778 784 6.261381 CCCTCCATCATGCAAAATAAAATTGG 59.739 38.462 0.00 0.00 0.00 3.16
815 821 0.976641 TGTGGGTAGGAGCAGAACAG 59.023 55.000 0.00 0.00 0.00 3.16
841 855 0.324460 ACGGAAGAGGGAGGTACCAG 60.324 60.000 15.94 0.00 41.20 4.00
846 860 0.410270 AGAAGACGGAAGAGGGAGGT 59.590 55.000 0.00 0.00 0.00 3.85
858 872 5.317733 AGAGGACAAACATAGAGAAGACG 57.682 43.478 0.00 0.00 0.00 4.18
859 873 5.420739 AGGAGAGGACAAACATAGAGAAGAC 59.579 44.000 0.00 0.00 0.00 3.01
946 960 1.265905 CCCGCGAAGTAGCAACTTTTT 59.734 47.619 8.23 0.00 46.09 1.94
947 961 0.872388 CCCGCGAAGTAGCAACTTTT 59.128 50.000 8.23 0.00 46.09 2.27
953 967 0.754217 ATACTCCCCGCGAAGTAGCA 60.754 55.000 8.23 0.00 36.85 3.49
954 968 1.242076 TATACTCCCCGCGAAGTAGC 58.758 55.000 8.23 0.00 0.00 3.58
955 969 3.305199 CCTTTATACTCCCCGCGAAGTAG 60.305 52.174 8.23 1.46 0.00 2.57
957 971 1.411612 CCTTTATACTCCCCGCGAAGT 59.588 52.381 8.23 10.91 0.00 3.01
958 972 1.411612 ACCTTTATACTCCCCGCGAAG 59.588 52.381 8.23 4.41 0.00 3.79
961 975 0.318445 CGACCTTTATACTCCCCGCG 60.318 60.000 0.00 0.00 0.00 6.46
1052 2471 2.488891 GGTCTGGGCATATACAATGGCA 60.489 50.000 12.76 0.00 45.13 4.92
1053 2472 2.162681 GGTCTGGGCATATACAATGGC 58.837 52.381 3.15 3.15 42.96 4.40
1075 2494 3.216800 CATGTGGCTGGTATTATGTGCT 58.783 45.455 0.00 0.00 0.00 4.40
1145 2564 2.375174 TGTTACCTGATCCAAAGTGCCT 59.625 45.455 0.00 0.00 0.00 4.75
1146 2565 2.790433 TGTTACCTGATCCAAAGTGCC 58.210 47.619 0.00 0.00 0.00 5.01
1147 2566 5.186198 ACTATGTTACCTGATCCAAAGTGC 58.814 41.667 0.00 0.00 0.00 4.40
1179 2600 5.444663 AAAGAGTGGATCTGTGCTTTTTC 57.555 39.130 0.00 0.00 38.67 2.29
1304 2728 0.254178 ATTGGTGCAGCGAGAGGATT 59.746 50.000 12.16 0.00 0.00 3.01
1469 2993 0.846693 AGAGAGAGAGAGAGGGGCTC 59.153 60.000 0.00 0.00 44.29 4.70
1478 3004 0.992695 TTGTCCCGGAGAGAGAGAGA 59.007 55.000 0.73 0.00 0.00 3.10
1490 3016 0.172803 CTAAGACCGGAGTTGTCCCG 59.827 60.000 9.46 0.00 46.10 5.14
1590 3126 2.496817 GTGCCTCGCCGAAGAGAT 59.503 61.111 8.38 0.00 40.57 2.75
1661 3197 3.688159 GTCAGCCCCGTACCACGT 61.688 66.667 0.00 0.00 40.58 4.49
1792 3328 1.597854 CAGCTCACGGTTCTTGGCA 60.598 57.895 0.00 0.00 0.00 4.92
1901 3437 0.821711 CCGGCCTTGAACCAAACAGA 60.822 55.000 0.00 0.00 0.00 3.41
2072 3608 0.322187 CCGGGGTAAAGTGGGTCAAG 60.322 60.000 0.00 0.00 0.00 3.02
2503 4108 6.147985 TGTGCGCTGTACTGATTAAATAAACA 59.852 34.615 9.73 0.00 0.00 2.83
2676 4295 5.911752 AGATCAGGAATATGTATCATCCGC 58.088 41.667 0.00 0.00 37.05 5.54
2691 4310 2.766263 ACCTATCGTGCAAAGATCAGGA 59.234 45.455 21.62 0.00 36.22 3.86
2810 4429 7.918076 ACTCCCTCTGTAACATTTTAGAATCA 58.082 34.615 0.00 0.00 0.00 2.57
2848 4467 3.410631 TTTTGGCCTACGACATGAAGA 57.589 42.857 3.32 0.00 0.00 2.87
3003 4711 6.769134 TGAACAATCTCCTACTGTTATCGA 57.231 37.500 0.00 0.00 33.53 3.59
3038 4746 5.607171 AGTACTCCCTCCGATCCAAAATAAT 59.393 40.000 0.00 0.00 0.00 1.28
3123 4831 7.126268 AGGCTTTCCATTAGCTAATTGGAATTT 59.874 33.333 30.19 20.59 38.67 1.82
3156 4864 9.525826 AAGGAAAAGATATCATCAGTTTGAAGT 57.474 29.630 5.32 0.00 0.00 3.01
3338 5046 2.154462 ACTGAGCATTTCGGAAACCAG 58.846 47.619 5.12 12.27 36.00 4.00
3347 5055 6.865205 AGCTTCAAAATGTTACTGAGCATTTC 59.135 34.615 0.00 0.00 42.39 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.