Multiple sequence alignment - TraesCS7A01G237200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G237200 chr7A 100.000 2684 0 0 1 2684 211239863 211237180 0 4957
1 TraesCS7A01G237200 chr7A 94.954 436 20 1 1 434 60195919 60195484 0 682
2 TraesCS7A01G237200 chrUn 97.232 2457 57 4 238 2684 257942611 257945066 0 4150
3 TraesCS7A01G237200 chrUn 97.025 2454 57 9 241 2684 233526766 233524319 0 4113
4 TraesCS7A01G237200 chrUn 95.041 1089 43 4 238 1316 429574693 429575780 0 1701
5 TraesCS7A01G237200 chrUn 94.954 436 20 1 1 434 182441733 182442168 0 682
6 TraesCS7A01G237200 chr4D 96.785 2457 68 4 238 2684 123687461 123689916 0 4089
7 TraesCS7A01G237200 chr4D 97.111 450 13 0 1 450 398050950 398050501 0 760
8 TraesCS7A01G237200 chr2D 96.703 2457 68 4 238 2684 17982871 17985324 0 4076
9 TraesCS7A01G237200 chr2D 96.699 2454 70 4 241 2684 637310203 637307751 0 4072
10 TraesCS7A01G237200 chr2D 96.176 2458 80 5 237 2684 306151385 306153838 0 4006
11 TraesCS7A01G237200 chr2D 97.556 450 11 0 1 450 200950356 200949907 0 771
12 TraesCS7A01G237200 chr2D 96.889 450 13 1 1 450 604432331 604431883 0 752
13 TraesCS7A01G237200 chr2D 93.778 450 23 1 1 450 291465984 291466428 0 671
14 TraesCS7A01G237200 chr7D 96.417 2456 77 4 238 2684 307087996 307090449 0 4037
15 TraesCS7A01G237200 chr7D 96.896 451 13 1 1 450 381947155 381946705 0 754
16 TraesCS7A01G237200 chr6D 96.298 2458 80 5 238 2684 283185911 283188368 0 4024
17 TraesCS7A01G237200 chr1D 96.397 2387 53 7 307 2684 212427461 212429823 0 3901
18 TraesCS7A01G237200 chr6A 95.039 2459 105 9 237 2684 79126812 79124360 0 3849
19 TraesCS7A01G237200 chr6B 97.365 1784 33 3 910 2684 128890812 128889034 0 3022
20 TraesCS7A01G237200 chr7B 97.706 1744 25 4 950 2684 698127721 698125984 0 2985
21 TraesCS7A01G237200 chr7B 94.954 436 20 1 1 434 327259191 327259626 0 682
22 TraesCS7A01G237200 chr5B 94.725 436 21 1 1 434 130584490 130584055 0 676


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G237200 chr7A 211237180 211239863 2683 True 4957 4957 100.000 1 2684 1 chr7A.!!$R2 2683
1 TraesCS7A01G237200 chrUn 257942611 257945066 2455 False 4150 4150 97.232 238 2684 1 chrUn.!!$F2 2446
2 TraesCS7A01G237200 chrUn 233524319 233526766 2447 True 4113 4113 97.025 241 2684 1 chrUn.!!$R1 2443
3 TraesCS7A01G237200 chrUn 429574693 429575780 1087 False 1701 1701 95.041 238 1316 1 chrUn.!!$F3 1078
4 TraesCS7A01G237200 chr4D 123687461 123689916 2455 False 4089 4089 96.785 238 2684 1 chr4D.!!$F1 2446
5 TraesCS7A01G237200 chr2D 17982871 17985324 2453 False 4076 4076 96.703 238 2684 1 chr2D.!!$F1 2446
6 TraesCS7A01G237200 chr2D 637307751 637310203 2452 True 4072 4072 96.699 241 2684 1 chr2D.!!$R3 2443
7 TraesCS7A01G237200 chr2D 306151385 306153838 2453 False 4006 4006 96.176 237 2684 1 chr2D.!!$F3 2447
8 TraesCS7A01G237200 chr7D 307087996 307090449 2453 False 4037 4037 96.417 238 2684 1 chr7D.!!$F1 2446
9 TraesCS7A01G237200 chr6D 283185911 283188368 2457 False 4024 4024 96.298 238 2684 1 chr6D.!!$F1 2446
10 TraesCS7A01G237200 chr1D 212427461 212429823 2362 False 3901 3901 96.397 307 2684 1 chr1D.!!$F1 2377
11 TraesCS7A01G237200 chr6A 79124360 79126812 2452 True 3849 3849 95.039 237 2684 1 chr6A.!!$R1 2447
12 TraesCS7A01G237200 chr6B 128889034 128890812 1778 True 3022 3022 97.365 910 2684 1 chr6B.!!$R1 1774
13 TraesCS7A01G237200 chr7B 698125984 698127721 1737 True 2985 2985 97.706 950 2684 1 chr7B.!!$R1 1734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.108585 GTGATGGATGTGCCCGGTAT 59.891 55.0 0.0 0.0 34.97 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 1816 2.03262 GGTCTTCTCGGCTGGAATCTA 58.967 52.381 0.0 0.0 0.0 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.585955 GGTGTACAACTCTTGAGACAGA 57.414 45.455 2.87 0.00 33.21 3.41
22 23 5.140747 GGTGTACAACTCTTGAGACAGAT 57.859 43.478 2.87 0.00 33.21 2.90
23 24 4.926238 GGTGTACAACTCTTGAGACAGATG 59.074 45.833 2.87 0.00 33.21 2.90
24 25 4.387256 GTGTACAACTCTTGAGACAGATGC 59.613 45.833 0.00 0.00 33.21 3.91
25 26 3.758755 ACAACTCTTGAGACAGATGCA 57.241 42.857 4.49 0.00 0.00 3.96
26 27 4.283363 ACAACTCTTGAGACAGATGCAT 57.717 40.909 0.00 0.00 0.00 3.96
27 28 4.252073 ACAACTCTTGAGACAGATGCATC 58.748 43.478 19.37 19.37 0.00 3.91
28 29 3.162202 ACTCTTGAGACAGATGCATCG 57.838 47.619 20.67 17.08 0.00 3.84
29 30 2.757314 ACTCTTGAGACAGATGCATCGA 59.243 45.455 20.67 8.54 0.00 3.59
30 31 3.181488 ACTCTTGAGACAGATGCATCGAG 60.181 47.826 20.67 18.64 0.00 4.04
31 32 2.100418 TCTTGAGACAGATGCATCGAGG 59.900 50.000 20.67 16.08 0.00 4.63
32 33 1.478631 TGAGACAGATGCATCGAGGT 58.521 50.000 20.67 18.98 0.00 3.85
33 34 1.135721 TGAGACAGATGCATCGAGGTG 59.864 52.381 20.67 15.45 0.00 4.00
34 35 0.179089 AGACAGATGCATCGAGGTGC 60.179 55.000 20.67 13.18 45.25 5.01
35 36 1.153289 ACAGATGCATCGAGGTGCC 60.153 57.895 20.67 0.00 44.43 5.01
36 37 2.107750 AGATGCATCGAGGTGCCG 59.892 61.111 20.67 0.00 44.43 5.69
37 38 2.969238 GATGCATCGAGGTGCCGG 60.969 66.667 11.68 0.00 44.43 6.13
45 46 4.767255 GAGGTGCCGGCCTGTGAG 62.767 72.222 26.77 0.00 39.34 3.51
47 48 4.329545 GGTGCCGGCCTGTGAGAA 62.330 66.667 26.77 0.00 0.00 2.87
48 49 3.050275 GTGCCGGCCTGTGAGAAC 61.050 66.667 26.77 9.00 0.00 3.01
49 50 4.680237 TGCCGGCCTGTGAGAACG 62.680 66.667 26.77 0.00 0.00 3.95
51 52 4.379243 CCGGCCTGTGAGAACGCT 62.379 66.667 0.00 0.00 0.00 5.07
52 53 2.811317 CGGCCTGTGAGAACGCTC 60.811 66.667 0.00 0.00 41.67 5.03
53 54 2.811317 GGCCTGTGAGAACGCTCG 60.811 66.667 0.00 0.00 44.33 5.03
54 55 2.049063 GCCTGTGAGAACGCTCGT 60.049 61.111 0.00 0.00 44.33 4.18
55 56 2.089349 GCCTGTGAGAACGCTCGTC 61.089 63.158 0.00 0.00 44.33 4.20
56 57 1.285950 CCTGTGAGAACGCTCGTCA 59.714 57.895 0.00 0.00 44.33 4.35
57 58 0.109086 CCTGTGAGAACGCTCGTCAT 60.109 55.000 0.00 0.00 44.33 3.06
58 59 1.132453 CCTGTGAGAACGCTCGTCATA 59.868 52.381 0.00 0.00 44.33 2.15
59 60 2.445316 CTGTGAGAACGCTCGTCATAG 58.555 52.381 0.00 0.00 44.33 2.23
60 61 1.192793 GTGAGAACGCTCGTCATAGC 58.807 55.000 0.00 0.00 44.33 2.97
61 62 0.808755 TGAGAACGCTCGTCATAGCA 59.191 50.000 0.00 0.00 44.33 3.49
62 63 1.405463 TGAGAACGCTCGTCATAGCAT 59.595 47.619 0.00 0.00 44.33 3.79
63 64 2.159240 TGAGAACGCTCGTCATAGCATT 60.159 45.455 0.00 0.00 44.33 3.56
64 65 2.196749 AGAACGCTCGTCATAGCATTG 58.803 47.619 0.00 0.00 42.91 2.82
65 66 0.652592 AACGCTCGTCATAGCATTGC 59.347 50.000 0.00 0.00 42.91 3.56
66 67 1.200103 CGCTCGTCATAGCATTGCG 59.800 57.895 2.38 0.00 42.91 4.85
67 68 1.083144 GCTCGTCATAGCATTGCGC 60.083 57.895 0.00 0.00 42.30 6.09
68 69 1.566563 CTCGTCATAGCATTGCGCC 59.433 57.895 4.18 0.00 44.04 6.53
69 70 1.153469 TCGTCATAGCATTGCGCCA 60.153 52.632 4.18 0.00 44.04 5.69
70 71 0.532640 TCGTCATAGCATTGCGCCAT 60.533 50.000 4.18 0.00 44.04 4.40
71 72 1.147473 CGTCATAGCATTGCGCCATA 58.853 50.000 4.18 0.00 44.04 2.74
72 73 1.530720 CGTCATAGCATTGCGCCATAA 59.469 47.619 4.18 0.00 44.04 1.90
73 74 2.160219 CGTCATAGCATTGCGCCATAAT 59.840 45.455 4.18 0.00 44.04 1.28
74 75 3.365264 CGTCATAGCATTGCGCCATAATT 60.365 43.478 4.18 0.00 44.04 1.40
75 76 4.549458 GTCATAGCATTGCGCCATAATTT 58.451 39.130 4.18 0.00 44.04 1.82
76 77 4.984161 GTCATAGCATTGCGCCATAATTTT 59.016 37.500 4.18 0.00 44.04 1.82
77 78 4.983538 TCATAGCATTGCGCCATAATTTTG 59.016 37.500 4.18 0.00 44.04 2.44
78 79 3.249986 AGCATTGCGCCATAATTTTGT 57.750 38.095 4.18 0.00 44.04 2.83
79 80 2.931325 AGCATTGCGCCATAATTTTGTG 59.069 40.909 4.18 0.00 44.04 3.33
80 81 2.928757 GCATTGCGCCATAATTTTGTGA 59.071 40.909 4.18 0.00 32.94 3.58
81 82 3.556775 GCATTGCGCCATAATTTTGTGAT 59.443 39.130 4.18 0.00 32.94 3.06
82 83 4.551217 GCATTGCGCCATAATTTTGTGATG 60.551 41.667 4.18 0.00 32.94 3.07
83 84 3.162202 TGCGCCATAATTTTGTGATGG 57.838 42.857 4.18 0.48 42.65 3.51
84 85 2.159128 TGCGCCATAATTTTGTGATGGG 60.159 45.455 4.18 0.00 40.51 4.00
85 86 2.159114 GCGCCATAATTTTGTGATGGGT 60.159 45.455 0.00 0.00 40.51 4.51
86 87 3.705604 CGCCATAATTTTGTGATGGGTC 58.294 45.455 6.36 0.00 40.51 4.46
87 88 3.381272 CGCCATAATTTTGTGATGGGTCT 59.619 43.478 6.36 0.00 40.51 3.85
88 89 4.142182 CGCCATAATTTTGTGATGGGTCTT 60.142 41.667 6.36 0.00 40.51 3.01
89 90 5.624281 CGCCATAATTTTGTGATGGGTCTTT 60.624 40.000 6.36 0.00 40.51 2.52
90 91 5.812127 GCCATAATTTTGTGATGGGTCTTTC 59.188 40.000 6.36 0.00 40.51 2.62
91 92 6.035843 CCATAATTTTGTGATGGGTCTTTCG 58.964 40.000 0.00 0.00 37.13 3.46
92 93 6.350110 CCATAATTTTGTGATGGGTCTTTCGT 60.350 38.462 0.00 0.00 37.13 3.85
93 94 5.529581 AATTTTGTGATGGGTCTTTCGTT 57.470 34.783 0.00 0.00 0.00 3.85
94 95 4.993029 TTTTGTGATGGGTCTTTCGTTT 57.007 36.364 0.00 0.00 0.00 3.60
95 96 4.993029 TTTGTGATGGGTCTTTCGTTTT 57.007 36.364 0.00 0.00 0.00 2.43
96 97 6.452494 TTTTGTGATGGGTCTTTCGTTTTA 57.548 33.333 0.00 0.00 0.00 1.52
97 98 6.452494 TTTGTGATGGGTCTTTCGTTTTAA 57.548 33.333 0.00 0.00 0.00 1.52
98 99 6.452494 TTGTGATGGGTCTTTCGTTTTAAA 57.548 33.333 0.00 0.00 0.00 1.52
99 100 6.452494 TGTGATGGGTCTTTCGTTTTAAAA 57.548 33.333 0.00 0.00 0.00 1.52
100 101 6.864342 TGTGATGGGTCTTTCGTTTTAAAAA 58.136 32.000 1.31 0.00 0.00 1.94
101 102 7.493367 TGTGATGGGTCTTTCGTTTTAAAAAT 58.507 30.769 1.31 0.00 0.00 1.82
102 103 8.630917 TGTGATGGGTCTTTCGTTTTAAAAATA 58.369 29.630 1.31 0.00 0.00 1.40
103 104 9.124807 GTGATGGGTCTTTCGTTTTAAAAATAG 57.875 33.333 1.31 0.00 0.00 1.73
104 105 8.301002 TGATGGGTCTTTCGTTTTAAAAATAGG 58.699 33.333 1.31 0.00 0.00 2.57
105 106 7.820578 TGGGTCTTTCGTTTTAAAAATAGGA 57.179 32.000 1.31 0.00 0.00 2.94
106 107 7.878036 TGGGTCTTTCGTTTTAAAAATAGGAG 58.122 34.615 1.31 0.00 0.00 3.69
107 108 7.503230 TGGGTCTTTCGTTTTAAAAATAGGAGT 59.497 33.333 1.31 0.00 0.00 3.85
108 109 8.355169 GGGTCTTTCGTTTTAAAAATAGGAGTT 58.645 33.333 1.31 0.00 0.00 3.01
109 110 9.740239 GGTCTTTCGTTTTAAAAATAGGAGTTT 57.260 29.630 1.31 0.00 0.00 2.66
129 130 4.436113 TTTTTGGGTCTAGTTTACCGGT 57.564 40.909 13.98 13.98 37.93 5.28
130 131 3.683365 TTTGGGTCTAGTTTACCGGTC 57.317 47.619 12.40 0.00 37.93 4.79
131 132 1.560505 TGGGTCTAGTTTACCGGTCC 58.439 55.000 12.40 2.51 37.93 4.46
132 133 0.457443 GGGTCTAGTTTACCGGTCCG 59.543 60.000 12.40 3.60 37.93 4.79
133 134 1.177401 GGTCTAGTTTACCGGTCCGT 58.823 55.000 12.40 0.00 0.00 4.69
134 135 1.133216 GGTCTAGTTTACCGGTCCGTC 59.867 57.143 12.40 0.00 0.00 4.79
135 136 1.812571 GTCTAGTTTACCGGTCCGTCA 59.187 52.381 12.40 0.00 0.00 4.35
136 137 2.228822 GTCTAGTTTACCGGTCCGTCAA 59.771 50.000 12.40 0.00 0.00 3.18
137 138 3.091545 TCTAGTTTACCGGTCCGTCAAT 58.908 45.455 12.40 0.00 0.00 2.57
138 139 4.096382 GTCTAGTTTACCGGTCCGTCAATA 59.904 45.833 12.40 0.00 0.00 1.90
139 140 3.959535 AGTTTACCGGTCCGTCAATAA 57.040 42.857 12.40 0.00 0.00 1.40
140 141 4.270245 AGTTTACCGGTCCGTCAATAAA 57.730 40.909 12.40 0.00 0.00 1.40
141 142 4.835678 AGTTTACCGGTCCGTCAATAAAT 58.164 39.130 12.40 0.00 0.00 1.40
142 143 4.632688 AGTTTACCGGTCCGTCAATAAATG 59.367 41.667 12.40 0.00 0.00 2.32
143 144 1.375551 ACCGGTCCGTCAATAAATGC 58.624 50.000 11.06 0.00 0.00 3.56
144 145 0.303493 CCGGTCCGTCAATAAATGCG 59.697 55.000 11.06 0.00 0.00 4.73
145 146 1.003851 CGGTCCGTCAATAAATGCGT 58.996 50.000 2.08 0.00 0.00 5.24
146 147 2.195096 CGGTCCGTCAATAAATGCGTA 58.805 47.619 2.08 0.00 0.00 4.42
147 148 2.798283 CGGTCCGTCAATAAATGCGTAT 59.202 45.455 2.08 0.00 0.00 3.06
148 149 3.362596 CGGTCCGTCAATAAATGCGTATG 60.363 47.826 2.08 0.00 0.00 2.39
149 150 3.805422 GGTCCGTCAATAAATGCGTATGA 59.195 43.478 0.00 0.00 0.00 2.15
150 151 4.271533 GGTCCGTCAATAAATGCGTATGAA 59.728 41.667 0.00 0.00 0.00 2.57
151 152 5.220700 GGTCCGTCAATAAATGCGTATGAAA 60.221 40.000 0.00 0.00 0.00 2.69
152 153 6.252281 GTCCGTCAATAAATGCGTATGAAAA 58.748 36.000 0.00 0.00 0.00 2.29
153 154 6.410914 GTCCGTCAATAAATGCGTATGAAAAG 59.589 38.462 0.00 0.00 0.00 2.27
154 155 6.092944 TCCGTCAATAAATGCGTATGAAAAGT 59.907 34.615 0.00 0.00 0.00 2.66
155 156 6.745450 CCGTCAATAAATGCGTATGAAAAGTT 59.255 34.615 0.00 0.00 0.00 2.66
156 157 7.906010 CCGTCAATAAATGCGTATGAAAAGTTA 59.094 33.333 0.00 0.00 0.00 2.24
157 158 9.268255 CGTCAATAAATGCGTATGAAAAGTTAA 57.732 29.630 0.00 0.00 0.00 2.01
167 168 9.767684 TGCGTATGAAAAGTTAAATAGTTGATG 57.232 29.630 0.00 0.00 0.00 3.07
168 169 9.769093 GCGTATGAAAAGTTAAATAGTTGATGT 57.231 29.630 0.00 0.00 0.00 3.06
177 178 9.466497 AAGTTAAATAGTTGATGTGATGGATGT 57.534 29.630 0.00 0.00 0.00 3.06
178 179 8.896744 AGTTAAATAGTTGATGTGATGGATGTG 58.103 33.333 0.00 0.00 0.00 3.21
179 180 5.762825 AATAGTTGATGTGATGGATGTGC 57.237 39.130 0.00 0.00 0.00 4.57
180 181 2.372264 AGTTGATGTGATGGATGTGCC 58.628 47.619 0.00 0.00 37.10 5.01
181 182 1.406539 GTTGATGTGATGGATGTGCCC 59.593 52.381 0.00 0.00 34.97 5.36
182 183 0.464193 TGATGTGATGGATGTGCCCG 60.464 55.000 0.00 0.00 34.97 6.13
183 184 1.152902 ATGTGATGGATGTGCCCGG 60.153 57.895 0.00 0.00 34.97 5.73
184 185 1.925285 ATGTGATGGATGTGCCCGGT 61.925 55.000 0.00 0.00 34.97 5.28
185 186 1.268283 TGTGATGGATGTGCCCGGTA 61.268 55.000 0.00 0.00 34.97 4.02
186 187 0.108585 GTGATGGATGTGCCCGGTAT 59.891 55.000 0.00 0.00 34.97 2.73
187 188 0.396435 TGATGGATGTGCCCGGTATC 59.604 55.000 0.00 0.00 34.97 2.24
188 189 0.670546 GATGGATGTGCCCGGTATCG 60.671 60.000 0.00 0.00 34.97 2.92
189 190 1.118965 ATGGATGTGCCCGGTATCGA 61.119 55.000 0.00 0.00 34.50 3.59
190 191 1.118965 TGGATGTGCCCGGTATCGAT 61.119 55.000 2.16 2.16 34.50 3.59
191 192 0.389948 GGATGTGCCCGGTATCGATC 60.390 60.000 0.00 0.00 39.00 3.69
192 193 0.317160 GATGTGCCCGGTATCGATCA 59.683 55.000 0.00 0.00 39.00 2.92
193 194 0.756294 ATGTGCCCGGTATCGATCAA 59.244 50.000 0.00 0.00 39.00 2.57
194 195 0.756294 TGTGCCCGGTATCGATCAAT 59.244 50.000 0.00 0.00 39.00 2.57
195 196 1.148310 GTGCCCGGTATCGATCAATG 58.852 55.000 0.00 0.00 39.00 2.82
196 197 1.044611 TGCCCGGTATCGATCAATGA 58.955 50.000 0.00 0.00 39.00 2.57
197 198 1.414550 TGCCCGGTATCGATCAATGAA 59.585 47.619 0.00 0.00 39.00 2.57
198 199 2.158885 TGCCCGGTATCGATCAATGAAA 60.159 45.455 0.00 0.00 39.00 2.69
199 200 2.223377 GCCCGGTATCGATCAATGAAAC 59.777 50.000 0.00 0.00 39.00 2.78
200 201 3.462982 CCCGGTATCGATCAATGAAACA 58.537 45.455 0.00 0.00 39.00 2.83
201 202 4.065088 CCCGGTATCGATCAATGAAACAT 58.935 43.478 0.00 0.00 39.00 2.71
202 203 4.152402 CCCGGTATCGATCAATGAAACATC 59.848 45.833 0.00 0.00 39.00 3.06
203 204 4.143326 CCGGTATCGATCAATGAAACATCG 60.143 45.833 0.00 0.00 40.66 3.84
208 209 3.791353 TCGATCAATGAAACATCGACTCG 59.209 43.478 2.94 0.00 42.60 4.18
209 210 3.791353 CGATCAATGAAACATCGACTCGA 59.209 43.478 3.06 3.06 41.61 4.04
219 220 2.898729 ATCGACTCGATGCAGGATTT 57.101 45.000 13.20 0.00 45.24 2.17
220 221 2.209838 TCGACTCGATGCAGGATTTC 57.790 50.000 0.00 0.00 0.00 2.17
221 222 1.476488 TCGACTCGATGCAGGATTTCA 59.524 47.619 0.00 0.00 0.00 2.69
222 223 2.094234 TCGACTCGATGCAGGATTTCAA 60.094 45.455 0.00 0.00 0.00 2.69
223 224 2.868583 CGACTCGATGCAGGATTTCAAT 59.131 45.455 0.00 0.00 0.00 2.57
224 225 4.051237 CGACTCGATGCAGGATTTCAATA 58.949 43.478 0.00 0.00 0.00 1.90
225 226 4.149571 CGACTCGATGCAGGATTTCAATAG 59.850 45.833 0.00 0.00 0.00 1.73
226 227 5.282055 ACTCGATGCAGGATTTCAATAGA 57.718 39.130 0.00 0.00 0.00 1.98
227 228 5.674525 ACTCGATGCAGGATTTCAATAGAA 58.325 37.500 0.00 0.00 0.00 2.10
228 229 5.525378 ACTCGATGCAGGATTTCAATAGAAC 59.475 40.000 0.00 0.00 32.39 3.01
229 230 4.507756 TCGATGCAGGATTTCAATAGAACG 59.492 41.667 0.00 0.00 32.39 3.95
230 231 4.507756 CGATGCAGGATTTCAATAGAACGA 59.492 41.667 0.00 0.00 32.39 3.85
231 232 5.006649 CGATGCAGGATTTCAATAGAACGAA 59.993 40.000 0.00 0.00 32.39 3.85
232 233 6.456853 CGATGCAGGATTTCAATAGAACGAAA 60.457 38.462 0.00 0.00 35.70 3.46
233 234 6.567687 TGCAGGATTTCAATAGAACGAAAA 57.432 33.333 0.00 0.00 34.95 2.29
234 235 6.976088 TGCAGGATTTCAATAGAACGAAAAA 58.024 32.000 0.00 0.00 34.95 1.94
235 236 6.861055 TGCAGGATTTCAATAGAACGAAAAAC 59.139 34.615 0.00 0.00 34.95 2.43
239 240 8.792633 AGGATTTCAATAGAACGAAAAACATCA 58.207 29.630 0.00 0.00 34.95 3.07
345 346 8.366401 TGCTTATGTGAAATCTCAATCCAAAAA 58.634 29.630 0.00 0.00 31.88 1.94
463 464 6.127897 ACCTGGAGATGAACAAATTCGATTTC 60.128 38.462 0.00 0.00 37.69 2.17
477 478 7.566858 AATTCGATTTCATAACACAAACAGC 57.433 32.000 0.00 0.00 0.00 4.40
512 513 8.145767 TCTCTCACGTCCACTCTTTTATTTTTA 58.854 33.333 0.00 0.00 0.00 1.52
681 683 7.975058 CACAAAAATGGTAGAATCATACATGCA 59.025 33.333 0.00 0.00 0.00 3.96
761 763 1.376812 GGCGTGGATTCTTTCCCGT 60.377 57.895 0.00 0.00 44.77 5.28
762 764 1.366854 GGCGTGGATTCTTTCCCGTC 61.367 60.000 0.00 0.00 44.77 4.79
821 823 2.300623 CGAAAGCTTCACTTGGAACG 57.699 50.000 0.00 0.00 39.09 3.95
893 895 1.804601 GGGTAGCGTTGTAAGTGCTT 58.195 50.000 0.00 0.00 40.06 3.91
932 937 4.019411 GGAAACCCCATTGGATCAATTTGT 60.019 41.667 3.62 0.00 38.00 2.83
963 968 5.599656 CCCAATAATTGATCTTCATGTGGGT 59.400 40.000 11.64 0.00 37.72 4.51
1105 1119 7.012327 CCTTGGTCGAGCTTATTTATGATTTCA 59.988 37.037 16.64 0.00 0.00 2.69
1303 1318 8.684386 TTCCATTTTTATAGGCATTACGATCA 57.316 30.769 0.00 0.00 0.00 2.92
1565 1583 9.947189 TCTTGGTCCCTTATTTATAGTTCTAGA 57.053 33.333 0.00 0.00 0.00 2.43
1616 1634 8.373981 AGCTATATCACAAGCTCATGTTTCTAT 58.626 33.333 0.00 0.00 45.92 1.98
1752 1770 0.396435 AGCACTGAACATGGTTCCGA 59.604 50.000 6.64 0.00 0.00 4.55
1793 1814 4.974645 TGTGTTTGGAGAGGTGTAGATT 57.025 40.909 0.00 0.00 0.00 2.40
1794 1815 4.641396 TGTGTTTGGAGAGGTGTAGATTG 58.359 43.478 0.00 0.00 0.00 2.67
1795 1816 4.102524 TGTGTTTGGAGAGGTGTAGATTGT 59.897 41.667 0.00 0.00 0.00 2.71
2041 2063 5.336213 GCTCAAGATCATGTTGTTCATTGGT 60.336 40.000 0.00 0.00 34.09 3.67
2312 2334 9.734620 CTGTTCATTAGTTCACTTGATTTTTCA 57.265 29.630 0.00 0.00 0.00 2.69
2417 2439 4.587189 ACTTCGCCCGCCTATCGC 62.587 66.667 0.00 0.00 36.73 4.58
2532 2554 1.000717 GCCTTTGTTAAGCTTCGCCAA 60.001 47.619 0.00 1.45 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.585955 TCTGTCTCAAGAGTTGTACACC 57.414 45.455 0.00 0.00 0.00 4.16
1 2 4.387256 GCATCTGTCTCAAGAGTTGTACAC 59.613 45.833 0.00 0.00 0.00 2.90
2 3 4.039124 TGCATCTGTCTCAAGAGTTGTACA 59.961 41.667 0.00 0.00 0.00 2.90
3 4 4.560128 TGCATCTGTCTCAAGAGTTGTAC 58.440 43.478 0.00 0.00 0.00 2.90
4 5 4.871933 TGCATCTGTCTCAAGAGTTGTA 57.128 40.909 0.00 0.00 0.00 2.41
5 6 3.758755 TGCATCTGTCTCAAGAGTTGT 57.241 42.857 0.00 0.00 0.00 3.32
6 7 3.306434 CGATGCATCTGTCTCAAGAGTTG 59.694 47.826 23.73 0.00 0.00 3.16
7 8 3.194329 TCGATGCATCTGTCTCAAGAGTT 59.806 43.478 23.73 0.00 0.00 3.01
8 9 2.757314 TCGATGCATCTGTCTCAAGAGT 59.243 45.455 23.73 0.00 0.00 3.24
9 10 3.373849 CTCGATGCATCTGTCTCAAGAG 58.626 50.000 23.73 15.47 0.00 2.85
10 11 2.100418 CCTCGATGCATCTGTCTCAAGA 59.900 50.000 23.73 10.27 0.00 3.02
11 12 2.159128 ACCTCGATGCATCTGTCTCAAG 60.159 50.000 23.73 6.39 0.00 3.02
12 13 1.827344 ACCTCGATGCATCTGTCTCAA 59.173 47.619 23.73 1.80 0.00 3.02
13 14 1.135721 CACCTCGATGCATCTGTCTCA 59.864 52.381 23.73 2.13 0.00 3.27
14 15 1.850377 CACCTCGATGCATCTGTCTC 58.150 55.000 23.73 0.00 0.00 3.36
15 16 0.179089 GCACCTCGATGCATCTGTCT 60.179 55.000 23.73 1.82 45.39 3.41
16 17 2.305405 GCACCTCGATGCATCTGTC 58.695 57.895 23.73 8.32 45.39 3.51
17 18 4.528674 GCACCTCGATGCATCTGT 57.471 55.556 23.73 14.89 45.39 3.41
28 29 4.767255 CTCACAGGCCGGCACCTC 62.767 72.222 30.85 11.04 38.26 3.85
30 31 4.329545 TTCTCACAGGCCGGCACC 62.330 66.667 30.85 12.35 0.00 5.01
31 32 3.050275 GTTCTCACAGGCCGGCAC 61.050 66.667 30.85 17.99 0.00 5.01
32 33 4.680237 CGTTCTCACAGGCCGGCA 62.680 66.667 30.85 5.89 0.00 5.69
34 35 4.379243 AGCGTTCTCACAGGCCGG 62.379 66.667 0.00 0.00 0.00 6.13
35 36 2.811317 GAGCGTTCTCACAGGCCG 60.811 66.667 0.00 0.00 39.16 6.13
36 37 2.811317 CGAGCGTTCTCACAGGCC 60.811 66.667 0.00 0.00 39.30 5.19
37 38 2.049063 ACGAGCGTTCTCACAGGC 60.049 61.111 0.00 0.00 39.30 4.85
38 39 0.109086 ATGACGAGCGTTCTCACAGG 60.109 55.000 0.00 0.00 39.30 4.00
39 40 2.445316 CTATGACGAGCGTTCTCACAG 58.555 52.381 0.00 0.00 39.30 3.66
40 41 1.467543 GCTATGACGAGCGTTCTCACA 60.468 52.381 0.00 0.00 39.30 3.58
41 42 1.192793 GCTATGACGAGCGTTCTCAC 58.807 55.000 0.00 0.00 39.30 3.51
42 43 0.808755 TGCTATGACGAGCGTTCTCA 59.191 50.000 0.00 1.07 45.99 3.27
43 44 2.126914 ATGCTATGACGAGCGTTCTC 57.873 50.000 0.00 0.00 45.99 2.87
44 45 2.196749 CAATGCTATGACGAGCGTTCT 58.803 47.619 0.00 0.00 46.42 3.01
45 46 1.332377 GCAATGCTATGACGAGCGTTC 60.332 52.381 0.00 0.00 46.42 3.95
47 48 1.482621 CGCAATGCTATGACGAGCGT 61.483 55.000 2.94 0.00 45.99 5.07
48 49 1.200103 CGCAATGCTATGACGAGCG 59.800 57.895 2.94 0.00 45.99 5.03
49 50 1.083144 GCGCAATGCTATGACGAGC 60.083 57.895 0.30 0.00 43.16 5.03
50 51 1.153597 TGGCGCAATGCTATGACGAG 61.154 55.000 10.83 0.00 45.43 4.18
51 52 0.532640 ATGGCGCAATGCTATGACGA 60.533 50.000 10.83 0.00 44.00 4.20
52 53 1.147473 TATGGCGCAATGCTATGACG 58.853 50.000 10.83 0.00 45.40 4.35
53 54 3.837213 ATTATGGCGCAATGCTATGAC 57.163 42.857 10.83 0.00 45.40 3.06
54 55 4.852134 AAATTATGGCGCAATGCTATGA 57.148 36.364 10.83 0.00 45.40 2.15
55 56 4.746115 ACAAAATTATGGCGCAATGCTATG 59.254 37.500 10.83 3.84 45.40 2.23
57 58 4.111198 CACAAAATTATGGCGCAATGCTA 58.889 39.130 10.83 0.00 45.43 3.49
58 59 2.931325 CACAAAATTATGGCGCAATGCT 59.069 40.909 10.83 0.00 45.43 3.79
59 60 2.928757 TCACAAAATTATGGCGCAATGC 59.071 40.909 10.83 0.00 45.38 3.56
60 61 4.025563 CCATCACAAAATTATGGCGCAATG 60.026 41.667 10.83 0.00 34.19 2.82
61 62 4.121317 CCATCACAAAATTATGGCGCAAT 58.879 39.130 10.83 5.96 34.19 3.56
62 63 3.519579 CCATCACAAAATTATGGCGCAA 58.480 40.909 10.83 0.00 34.19 4.85
63 64 2.159128 CCCATCACAAAATTATGGCGCA 60.159 45.455 10.83 0.00 39.10 6.09
64 65 2.159114 ACCCATCACAAAATTATGGCGC 60.159 45.455 0.00 0.00 39.10 6.53
65 66 3.381272 AGACCCATCACAAAATTATGGCG 59.619 43.478 0.00 0.00 39.10 5.69
66 67 5.343307 AAGACCCATCACAAAATTATGGC 57.657 39.130 0.00 0.00 39.10 4.40
67 68 6.035843 CGAAAGACCCATCACAAAATTATGG 58.964 40.000 0.00 0.00 39.95 2.74
68 69 6.620678 ACGAAAGACCCATCACAAAATTATG 58.379 36.000 0.00 0.00 0.00 1.90
69 70 6.834168 ACGAAAGACCCATCACAAAATTAT 57.166 33.333 0.00 0.00 0.00 1.28
70 71 6.642707 AACGAAAGACCCATCACAAAATTA 57.357 33.333 0.00 0.00 0.00 1.40
71 72 5.529581 AACGAAAGACCCATCACAAAATT 57.470 34.783 0.00 0.00 0.00 1.82
72 73 5.529581 AAACGAAAGACCCATCACAAAAT 57.470 34.783 0.00 0.00 0.00 1.82
73 74 4.993029 AAACGAAAGACCCATCACAAAA 57.007 36.364 0.00 0.00 0.00 2.44
74 75 4.993029 AAAACGAAAGACCCATCACAAA 57.007 36.364 0.00 0.00 0.00 2.83
75 76 6.452494 TTTAAAACGAAAGACCCATCACAA 57.548 33.333 0.00 0.00 0.00 3.33
76 77 6.452494 TTTTAAAACGAAAGACCCATCACA 57.548 33.333 0.00 0.00 0.00 3.58
77 78 7.940178 ATTTTTAAAACGAAAGACCCATCAC 57.060 32.000 0.00 0.00 0.00 3.06
78 79 8.301002 CCTATTTTTAAAACGAAAGACCCATCA 58.699 33.333 0.00 0.00 0.00 3.07
79 80 8.517056 TCCTATTTTTAAAACGAAAGACCCATC 58.483 33.333 0.00 0.00 0.00 3.51
80 81 8.411991 TCCTATTTTTAAAACGAAAGACCCAT 57.588 30.769 0.00 0.00 0.00 4.00
81 82 7.503230 ACTCCTATTTTTAAAACGAAAGACCCA 59.497 33.333 0.00 0.00 0.00 4.51
82 83 7.879070 ACTCCTATTTTTAAAACGAAAGACCC 58.121 34.615 0.00 0.00 0.00 4.46
83 84 9.740239 AAACTCCTATTTTTAAAACGAAAGACC 57.260 29.630 0.00 0.00 0.00 3.85
108 109 4.388485 GACCGGTAAACTAGACCCAAAAA 58.612 43.478 7.34 0.00 32.95 1.94
109 110 3.244526 GGACCGGTAAACTAGACCCAAAA 60.245 47.826 7.34 0.00 32.95 2.44
110 111 2.302733 GGACCGGTAAACTAGACCCAAA 59.697 50.000 7.34 0.00 32.95 3.28
111 112 1.901833 GGACCGGTAAACTAGACCCAA 59.098 52.381 7.34 0.00 32.95 4.12
112 113 1.560505 GGACCGGTAAACTAGACCCA 58.439 55.000 7.34 0.00 32.95 4.51
113 114 0.457443 CGGACCGGTAAACTAGACCC 59.543 60.000 7.34 0.00 32.95 4.46
114 115 1.133216 GACGGACCGGTAAACTAGACC 59.867 57.143 20.00 0.00 0.00 3.85
115 116 1.812571 TGACGGACCGGTAAACTAGAC 59.187 52.381 20.00 0.00 0.00 2.59
116 117 2.198827 TGACGGACCGGTAAACTAGA 57.801 50.000 20.00 0.00 0.00 2.43
117 118 3.515330 ATTGACGGACCGGTAAACTAG 57.485 47.619 20.00 0.00 0.00 2.57
118 119 5.398603 TTTATTGACGGACCGGTAAACTA 57.601 39.130 20.00 0.00 0.00 2.24
119 120 3.959535 TTATTGACGGACCGGTAAACT 57.040 42.857 20.00 0.00 0.00 2.66
120 121 4.728595 GCATTTATTGACGGACCGGTAAAC 60.729 45.833 20.00 0.00 0.00 2.01
121 122 3.374678 GCATTTATTGACGGACCGGTAAA 59.625 43.478 20.00 16.32 0.00 2.01
122 123 2.937799 GCATTTATTGACGGACCGGTAA 59.062 45.455 20.00 12.95 0.00 2.85
123 124 2.553086 GCATTTATTGACGGACCGGTA 58.447 47.619 20.00 3.23 0.00 4.02
124 125 1.375551 GCATTTATTGACGGACCGGT 58.624 50.000 20.00 6.92 0.00 5.28
125 126 0.303493 CGCATTTATTGACGGACCGG 59.697 55.000 20.00 0.00 0.00 5.28
126 127 1.003851 ACGCATTTATTGACGGACCG 58.996 50.000 13.61 13.61 31.79 4.79
127 128 3.805422 TCATACGCATTTATTGACGGACC 59.195 43.478 0.00 0.00 31.79 4.46
128 129 5.398176 TTCATACGCATTTATTGACGGAC 57.602 39.130 0.00 0.00 31.79 4.79
129 130 6.092944 ACTTTTCATACGCATTTATTGACGGA 59.907 34.615 0.00 0.00 31.79 4.69
130 131 6.255215 ACTTTTCATACGCATTTATTGACGG 58.745 36.000 0.00 0.00 31.79 4.79
131 132 7.719689 AACTTTTCATACGCATTTATTGACG 57.280 32.000 0.00 0.00 0.00 4.35
141 142 9.767684 CATCAACTATTTAACTTTTCATACGCA 57.232 29.630 0.00 0.00 0.00 5.24
142 143 9.769093 ACATCAACTATTTAACTTTTCATACGC 57.231 29.630 0.00 0.00 0.00 4.42
151 152 9.466497 ACATCCATCACATCAACTATTTAACTT 57.534 29.630 0.00 0.00 0.00 2.66
152 153 8.896744 CACATCCATCACATCAACTATTTAACT 58.103 33.333 0.00 0.00 0.00 2.24
153 154 7.645340 GCACATCCATCACATCAACTATTTAAC 59.355 37.037 0.00 0.00 0.00 2.01
154 155 7.201812 GGCACATCCATCACATCAACTATTTAA 60.202 37.037 0.00 0.00 34.01 1.52
155 156 6.262944 GGCACATCCATCACATCAACTATTTA 59.737 38.462 0.00 0.00 34.01 1.40
156 157 5.068198 GGCACATCCATCACATCAACTATTT 59.932 40.000 0.00 0.00 34.01 1.40
157 158 4.581824 GGCACATCCATCACATCAACTATT 59.418 41.667 0.00 0.00 34.01 1.73
158 159 4.139786 GGCACATCCATCACATCAACTAT 58.860 43.478 0.00 0.00 34.01 2.12
159 160 3.544684 GGCACATCCATCACATCAACTA 58.455 45.455 0.00 0.00 34.01 2.24
160 161 2.372264 GGCACATCCATCACATCAACT 58.628 47.619 0.00 0.00 34.01 3.16
161 162 1.406539 GGGCACATCCATCACATCAAC 59.593 52.381 0.00 0.00 36.21 3.18
162 163 1.766494 GGGCACATCCATCACATCAA 58.234 50.000 0.00 0.00 36.21 2.57
163 164 0.464193 CGGGCACATCCATCACATCA 60.464 55.000 0.00 0.00 36.21 3.07
164 165 1.168407 CCGGGCACATCCATCACATC 61.168 60.000 0.00 0.00 36.21 3.06
165 166 1.152902 CCGGGCACATCCATCACAT 60.153 57.895 0.00 0.00 36.21 3.21
166 167 1.268283 TACCGGGCACATCCATCACA 61.268 55.000 6.32 0.00 36.21 3.58
167 168 0.108585 ATACCGGGCACATCCATCAC 59.891 55.000 6.32 0.00 36.21 3.06
168 169 0.396435 GATACCGGGCACATCCATCA 59.604 55.000 6.32 0.00 36.21 3.07
169 170 0.670546 CGATACCGGGCACATCCATC 60.671 60.000 6.32 0.00 36.21 3.51
170 171 1.118965 TCGATACCGGGCACATCCAT 61.119 55.000 6.32 0.00 36.21 3.41
171 172 1.118965 ATCGATACCGGGCACATCCA 61.119 55.000 6.32 0.00 36.21 3.41
172 173 0.389948 GATCGATACCGGGCACATCC 60.390 60.000 6.32 0.00 36.24 3.51
173 174 0.317160 TGATCGATACCGGGCACATC 59.683 55.000 6.32 1.83 36.24 3.06
174 175 0.756294 TTGATCGATACCGGGCACAT 59.244 50.000 6.32 0.00 36.24 3.21
175 176 0.756294 ATTGATCGATACCGGGCACA 59.244 50.000 6.32 0.00 36.24 4.57
176 177 1.148310 CATTGATCGATACCGGGCAC 58.852 55.000 6.32 0.00 36.24 5.01
177 178 1.044611 TCATTGATCGATACCGGGCA 58.955 50.000 6.32 0.00 36.24 5.36
178 179 2.163818 TTCATTGATCGATACCGGGC 57.836 50.000 6.32 0.00 36.24 6.13
179 180 3.462982 TGTTTCATTGATCGATACCGGG 58.537 45.455 6.32 0.00 36.24 5.73
180 181 4.143326 CGATGTTTCATTGATCGATACCGG 60.143 45.833 0.00 0.00 41.18 5.28
181 182 4.679654 TCGATGTTTCATTGATCGATACCG 59.320 41.667 0.00 0.00 42.20 4.02
182 183 5.692204 AGTCGATGTTTCATTGATCGATACC 59.308 40.000 11.87 2.30 46.88 2.73
183 184 6.397998 CGAGTCGATGTTTCATTGATCGATAC 60.398 42.308 6.73 8.88 46.88 2.24
184 185 5.625311 CGAGTCGATGTTTCATTGATCGATA 59.375 40.000 6.73 0.00 46.88 2.92
185 186 4.442403 CGAGTCGATGTTTCATTGATCGAT 59.558 41.667 6.73 0.00 46.88 3.59
186 187 3.791353 CGAGTCGATGTTTCATTGATCGA 59.209 43.478 6.73 6.10 44.21 3.59
187 188 3.791353 TCGAGTCGATGTTTCATTGATCG 59.209 43.478 12.09 16.28 40.26 3.69
188 189 5.896922 ATCGAGTCGATGTTTCATTGATC 57.103 39.130 26.54 0.00 45.24 2.92
201 202 1.476488 TGAAATCCTGCATCGAGTCGA 59.524 47.619 19.06 19.06 41.13 4.20
202 203 1.926561 TGAAATCCTGCATCGAGTCG 58.073 50.000 6.09 6.09 0.00 4.18
203 204 5.292765 TCTATTGAAATCCTGCATCGAGTC 58.707 41.667 0.00 0.00 0.00 3.36
204 205 5.282055 TCTATTGAAATCCTGCATCGAGT 57.718 39.130 0.00 0.00 0.00 4.18
205 206 5.332883 CGTTCTATTGAAATCCTGCATCGAG 60.333 44.000 0.00 0.00 33.52 4.04
206 207 4.507756 CGTTCTATTGAAATCCTGCATCGA 59.492 41.667 0.00 0.00 33.52 3.59
207 208 4.507756 TCGTTCTATTGAAATCCTGCATCG 59.492 41.667 0.00 0.00 33.52 3.84
208 209 5.991328 TCGTTCTATTGAAATCCTGCATC 57.009 39.130 0.00 0.00 33.52 3.91
209 210 6.757897 TTTCGTTCTATTGAAATCCTGCAT 57.242 33.333 0.00 0.00 33.52 3.96
210 211 6.567687 TTTTCGTTCTATTGAAATCCTGCA 57.432 33.333 0.00 0.00 34.35 4.41
211 212 6.861055 TGTTTTTCGTTCTATTGAAATCCTGC 59.139 34.615 0.00 0.00 34.35 4.85
212 213 8.970691 ATGTTTTTCGTTCTATTGAAATCCTG 57.029 30.769 0.00 0.00 34.35 3.86
213 214 8.792633 TGATGTTTTTCGTTCTATTGAAATCCT 58.207 29.630 0.00 0.00 34.35 3.24
214 215 8.964420 TGATGTTTTTCGTTCTATTGAAATCC 57.036 30.769 0.00 0.00 34.35 3.01
226 227 9.367444 CCTCTACTACTTATGATGTTTTTCGTT 57.633 33.333 0.00 0.00 0.00 3.85
227 228 7.980099 CCCTCTACTACTTATGATGTTTTTCGT 59.020 37.037 0.00 0.00 0.00 3.85
228 229 8.195436 TCCCTCTACTACTTATGATGTTTTTCG 58.805 37.037 0.00 0.00 0.00 3.46
232 233 9.315363 CCTATCCCTCTACTACTTATGATGTTT 57.685 37.037 0.00 0.00 0.00 2.83
233 234 8.457757 ACCTATCCCTCTACTACTTATGATGTT 58.542 37.037 0.00 0.00 0.00 2.71
234 235 8.002431 ACCTATCCCTCTACTACTTATGATGT 57.998 38.462 0.00 0.00 0.00 3.06
235 236 9.398538 GTACCTATCCCTCTACTACTTATGATG 57.601 40.741 0.00 0.00 0.00 3.07
345 346 6.505272 TGGTTTTTCCAACGAAACGAATATT 58.495 32.000 0.00 0.00 44.12 1.28
346 347 6.074544 TGGTTTTTCCAACGAAACGAATAT 57.925 33.333 0.00 0.00 44.12 1.28
463 464 3.180189 CGCTTTGTGCTGTTTGTGTTATG 59.820 43.478 0.00 0.00 40.11 1.90
528 530 1.608055 CACAAGCTGTGGATCCAACA 58.392 50.000 18.20 15.55 44.27 3.33
681 683 0.606604 CAAAGCCAATTCTGCCTGCT 59.393 50.000 0.00 0.00 0.00 4.24
762 764 2.755655 TCTGCGAAAGTCTCCCTTAGAG 59.244 50.000 0.00 0.00 44.75 2.43
772 774 6.524586 CCTTGAAATGTAAATCTGCGAAAGTC 59.475 38.462 0.00 0.00 0.00 3.01
780 782 3.734902 GCGCCCCTTGAAATGTAAATCTG 60.735 47.826 0.00 0.00 0.00 2.90
821 823 6.527372 TCGTTATAAAAATTAACAAAGCCCGC 59.473 34.615 0.00 0.00 31.34 6.13
872 874 0.388907 GCACTTACAACGCTACCCGA 60.389 55.000 0.00 0.00 41.02 5.14
882 884 3.664107 AGCTGATTCGAAGCACTTACAA 58.336 40.909 12.91 0.00 43.37 2.41
986 991 5.582269 GTGAGCAGCATATACAAGACTGAAA 59.418 40.000 0.00 0.00 0.00 2.69
988 993 4.403752 AGTGAGCAGCATATACAAGACTGA 59.596 41.667 0.00 0.00 0.00 3.41
1030 1035 3.633065 CCACCTCCCTTTTTCGTAACAAA 59.367 43.478 0.00 0.00 0.00 2.83
1105 1119 2.812011 GTTCGTTTACCAGGTTCAGCAT 59.188 45.455 0.00 0.00 0.00 3.79
1303 1318 4.098894 AGCCCATGTCTTTGAAATCCAAT 58.901 39.130 0.00 0.00 34.23 3.16
1565 1583 5.190677 CACCTAATTCCAGACCGGTTAATT 58.809 41.667 9.42 14.72 35.57 1.40
1646 1664 8.812513 TGACTCATTTTGATGGAGATTTGTAT 57.187 30.769 0.00 0.00 33.00 2.29
1752 1770 5.932303 ACACAAACGCAATATCTTGAGTACT 59.068 36.000 0.00 0.00 43.46 2.73
1793 1814 2.427453 GTCTTCTCGGCTGGAATCTACA 59.573 50.000 0.00 0.00 0.00 2.74
1794 1815 2.223852 GGTCTTCTCGGCTGGAATCTAC 60.224 54.545 0.00 0.00 0.00 2.59
1795 1816 2.032620 GGTCTTCTCGGCTGGAATCTA 58.967 52.381 0.00 0.00 0.00 1.98
1992 2014 8.128582 GCTATCATTTGTTCAATTTGGTCGATA 58.871 33.333 0.00 0.00 0.00 2.92
2041 2063 3.118738 GCTCGTTCTCCCCTCTTCAATTA 60.119 47.826 0.00 0.00 0.00 1.40
2312 2334 2.386661 AGCGGTTCAAGACATCGAAT 57.613 45.000 0.00 0.00 0.00 3.34
2417 2439 2.956964 GACGAAGCCGAGCCGATG 60.957 66.667 0.00 0.00 39.50 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.