Multiple sequence alignment - TraesCS7A01G235800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G235800 chr7A 100.000 4133 0 0 1 4133 208129819 208125687 0.000000e+00 7633.0
1 TraesCS7A01G235800 chr7D 93.432 3319 153 36 1 3275 198717634 198714337 0.000000e+00 4861.0
2 TraesCS7A01G235800 chr7D 91.077 325 18 9 3669 3990 198713938 198713622 2.950000e-116 429.0
3 TraesCS7A01G235800 chr7D 89.256 242 26 0 3428 3669 384251541 384251300 1.870000e-78 303.0
4 TraesCS7A01G235800 chr7D 89.076 119 8 3 3268 3386 198714109 198713996 4.310000e-30 143.0
5 TraesCS7A01G235800 chr7B 93.316 1511 68 14 1874 3382 162587546 162589025 0.000000e+00 2200.0
6 TraesCS7A01G235800 chr7B 86.245 1374 124 27 486 1837 162571973 162573303 0.000000e+00 1430.0
7 TraesCS7A01G235800 chr7B 87.948 307 19 8 3669 3965 162589058 162589356 3.060000e-91 346.0
8 TraesCS7A01G235800 chr1B 90.795 239 22 0 3426 3664 322210954 322211192 1.850000e-83 320.0
9 TraesCS7A01G235800 chr1B 100.000 28 0 0 2684 2711 342086264 342086237 7.000000e-03 52.8
10 TraesCS7A01G235800 chr3B 89.212 241 26 0 3430 3670 266021658 266021418 6.710000e-78 302.0
11 TraesCS7A01G235800 chr4D 88.843 242 27 0 3428 3669 68949460 68949701 8.690000e-77 298.0
12 TraesCS7A01G235800 chr4D 86.822 258 32 2 3428 3684 380186552 380186808 1.880000e-73 287.0
13 TraesCS7A01G235800 chr5D 88.306 248 27 2 3433 3678 553721152 553721399 3.120000e-76 296.0
14 TraesCS7A01G235800 chr5D 87.649 251 31 0 3428 3678 348299064 348299314 4.040000e-75 292.0
15 TraesCS7A01G235800 chr1D 87.649 251 31 0 3428 3678 60621551 60621801 4.040000e-75 292.0
16 TraesCS7A01G235800 chr6B 87.160 257 32 1 3428 3683 374208258 374208002 1.450000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G235800 chr7A 208125687 208129819 4132 True 7633 7633 100.000 1 4133 1 chr7A.!!$R1 4132
1 TraesCS7A01G235800 chr7D 198713622 198717634 4012 True 1811 4861 91.195 1 3990 3 chr7D.!!$R2 3989
2 TraesCS7A01G235800 chr7B 162571973 162573303 1330 False 1430 1430 86.245 486 1837 1 chr7B.!!$F1 1351
3 TraesCS7A01G235800 chr7B 162587546 162589356 1810 False 1273 2200 90.632 1874 3965 2 chr7B.!!$F2 2091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.034756 CCTGTCGGTGTTCATGGACA 59.965 55.000 1.52 1.52 37.77 4.02 F
350 351 0.106519 AATTTGGGAGGCTCCATCGG 60.107 55.000 33.27 0.00 38.64 4.18 F
361 362 0.178767 CTCCATCGGTGCAATCCTCA 59.821 55.000 0.00 0.00 0.00 3.86 F
449 453 0.449388 CTTCTTGAAGTGGATGCGGC 59.551 55.000 2.44 0.00 0.00 6.53 F
987 999 0.693049 AGACCATTTTCGTGGAGGCT 59.307 50.000 0.00 0.00 42.02 4.58 F
1284 1302 1.455849 CAGCCTTGTTGGACCCAGA 59.544 57.895 0.00 0.00 38.35 3.86 F
2724 2755 1.302271 GGGGTTCAAGGTGGTCGTC 60.302 63.158 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1668 0.035439 TCGAATTTCTCCCTGCCCAC 60.035 55.000 0.00 0.0 0.00 4.61 R
1809 1837 0.390472 CTGCCTCCTCGTTCTTGTCC 60.390 60.000 0.00 0.0 0.00 4.02 R
2241 2272 1.972198 CCAGTAGTTGCCGGTGAGA 59.028 57.895 1.90 0.0 0.00 3.27 R
2401 2432 2.129823 TCGTTCTCAAAGTCCACGAC 57.870 50.000 0.00 0.0 35.05 4.34 R
2652 2683 0.537188 TGAGGATCTTCCGGCTGTTC 59.463 55.000 0.00 0.0 42.75 3.18 R
3079 3110 1.408340 GGGCCTAAACCTCTCTACGTC 59.592 57.143 0.84 0.0 0.00 4.34 R
4063 4382 0.034896 AAATCGCACTCGTCCTGGTT 59.965 50.000 0.00 0.0 36.96 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 0.249953 TGGTGTCGCGGTAATGTTGT 60.250 50.000 6.13 0.00 0.00 3.32
103 104 4.496673 GCGGTAATGTTGTTTCAACAGTGA 60.497 41.667 20.43 7.48 40.50 3.41
197 198 4.195416 GAGCTTGGGAGTTTCTATTCCTG 58.805 47.826 0.00 0.00 33.85 3.86
213 214 0.034756 CCTGTCGGTGTTCATGGACA 59.965 55.000 1.52 1.52 37.77 4.02
228 229 4.853924 ATGGACAACATGTTGGTTCTTC 57.146 40.909 35.20 24.57 44.45 2.87
245 246 5.873164 GGTTCTTCATACTTTACATCGGTGT 59.127 40.000 6.54 6.54 42.39 4.16
272 273 2.102070 TGGCATCGTCAACGGTATTT 57.898 45.000 2.31 0.00 40.29 1.40
280 281 5.676532 TCGTCAACGGTATTTTCATGTTT 57.323 34.783 2.31 0.00 40.29 2.83
286 287 6.697892 TCAACGGTATTTTCATGTTTTCCAAC 59.302 34.615 0.00 0.00 0.00 3.77
310 311 3.228188 TGAGTCTTTGTGGGCAAGATT 57.772 42.857 0.00 0.00 35.82 2.40
325 326 0.670546 AGATTGTTGCCTGACCGTCG 60.671 55.000 0.00 0.00 0.00 5.12
347 348 1.009997 TCCAATTTGGGAGGCTCCAT 58.990 50.000 33.27 16.86 38.64 3.41
348 349 1.063717 TCCAATTTGGGAGGCTCCATC 60.064 52.381 33.27 18.39 38.64 3.51
349 350 1.027357 CAATTTGGGAGGCTCCATCG 58.973 55.000 33.27 12.32 38.64 3.84
350 351 0.106519 AATTTGGGAGGCTCCATCGG 60.107 55.000 33.27 0.00 38.64 4.18
351 352 1.281925 ATTTGGGAGGCTCCATCGGT 61.282 55.000 33.27 13.17 38.64 4.69
361 362 0.178767 CTCCATCGGTGCAATCCTCA 59.821 55.000 0.00 0.00 0.00 3.86
375 376 5.766670 TGCAATCCTCACCTAATCAATCATC 59.233 40.000 0.00 0.00 0.00 2.92
377 378 5.815233 ATCCTCACCTAATCAATCATCGT 57.185 39.130 0.00 0.00 0.00 3.73
378 379 4.948847 TCCTCACCTAATCAATCATCGTG 58.051 43.478 0.00 0.00 0.00 4.35
393 394 8.296000 TCAATCATCGTGTGAAAAATACATGTT 58.704 29.630 2.30 0.00 40.97 2.71
394 395 8.367396 CAATCATCGTGTGAAAAATACATGTTG 58.633 33.333 2.30 0.00 40.97 3.33
409 410 3.245371 ACATGTTGAGACATCCCACCATT 60.245 43.478 0.00 0.00 44.55 3.16
410 411 2.794103 TGTTGAGACATCCCACCATTG 58.206 47.619 0.00 0.00 0.00 2.82
422 423 2.278336 CCATTGCCATTGCGCGAG 60.278 61.111 12.10 0.00 41.78 5.03
434 438 3.007973 GCGCGAGAACCCCTCTTCT 62.008 63.158 12.10 0.00 39.78 2.85
441 445 3.669536 GAGAACCCCTCTTCTTGAAGTG 58.330 50.000 9.80 7.65 38.86 3.16
449 453 0.449388 CTTCTTGAAGTGGATGCGGC 59.551 55.000 2.44 0.00 0.00 6.53
455 459 4.760047 AGTGGATGCGGCGACACC 62.760 66.667 12.98 10.49 34.50 4.16
465 469 2.028484 GCGACACCGACACCAGAA 59.972 61.111 0.00 0.00 38.22 3.02
656 662 7.452880 TCTTTTGGTGACATCTTTATGGAAG 57.547 36.000 0.00 0.00 42.32 3.46
657 663 6.434028 TCTTTTGGTGACATCTTTATGGAAGG 59.566 38.462 0.00 0.00 42.32 3.46
706 712 1.541147 CCCGTCATGTGCTGTGAAATT 59.459 47.619 0.00 0.00 0.00 1.82
772 778 1.710816 AGGGAGAAGGATCCACGATC 58.289 55.000 15.82 6.64 41.52 3.69
782 788 2.498167 GATCCACGATCCCATTCCTTG 58.502 52.381 0.00 0.00 33.37 3.61
795 801 3.125829 CCATTCCTTGTCACGATGAAGTG 59.874 47.826 0.00 0.00 43.11 3.16
959 971 4.241999 CTGTGCTTATGCCGCGGC 62.242 66.667 42.35 42.35 42.35 6.53
987 999 0.693049 AGACCATTTTCGTGGAGGCT 59.307 50.000 0.00 0.00 42.02 4.58
988 1000 1.906574 AGACCATTTTCGTGGAGGCTA 59.093 47.619 0.00 0.00 42.02 3.93
989 1001 2.304761 AGACCATTTTCGTGGAGGCTAA 59.695 45.455 0.00 0.00 42.02 3.09
1098 1110 3.640407 TTGCTCGGCTCCCTGCTT 61.640 61.111 0.00 0.00 42.39 3.91
1188 1200 8.359642 CCTCCTCTTCTTCTAATTGTCATAGAG 58.640 40.741 0.00 0.00 31.41 2.43
1189 1201 8.243961 TCCTCTTCTTCTAATTGTCATAGAGG 57.756 38.462 0.00 0.00 44.78 3.69
1202 1214 8.970859 ATTGTCATAGAGGGAATCAACTTTAG 57.029 34.615 0.00 0.00 0.00 1.85
1208 1220 4.163268 AGAGGGAATCAACTTTAGGAGCTC 59.837 45.833 4.71 4.71 0.00 4.09
1234 1252 5.884792 AGGAGCAGGAAAGTTTTATGATCAG 59.115 40.000 16.32 0.00 29.19 2.90
1262 1280 7.121168 CCTTACAATCTTTATCTTGGTGCTCAA 59.879 37.037 0.00 0.00 0.00 3.02
1284 1302 1.455849 CAGCCTTGTTGGACCCAGA 59.544 57.895 0.00 0.00 38.35 3.86
1304 1322 2.286872 AGGCAATCGATTCAGCTGAAG 58.713 47.619 31.14 20.04 37.48 3.02
1373 1391 3.000078 CGCACGCCGAATCAATATATACC 60.000 47.826 0.00 0.00 40.02 2.73
1465 1484 2.174424 AGAGGAATGGAGGAATTCAGCC 59.826 50.000 7.93 8.24 38.14 4.85
1466 1485 1.925255 AGGAATGGAGGAATTCAGCCA 59.075 47.619 17.56 17.56 38.14 4.75
1634 1656 3.924918 TCTTCAGAGAAACAGGACGAG 57.075 47.619 0.00 0.00 0.00 4.18
1670 1692 2.550978 GCAGGGAGAAATTCGATCGAA 58.449 47.619 30.83 30.83 38.59 3.71
1708 1730 7.335422 TGCCATTTCTGTTTATTGTTGTTGTTT 59.665 29.630 0.00 0.00 0.00 2.83
1715 1737 9.261180 TCTGTTTATTGTTGTTGTTTTTGTTCA 57.739 25.926 0.00 0.00 0.00 3.18
1716 1738 9.869844 CTGTTTATTGTTGTTGTTTTTGTTCAA 57.130 25.926 0.00 0.00 0.00 2.69
1727 1752 8.547069 TGTTGTTTTTGTTCAATTATTAGCAGC 58.453 29.630 0.00 0.00 0.00 5.25
1761 1786 5.049167 TCAAATTTTTCTGATGTGTGGTGC 58.951 37.500 0.00 0.00 0.00 5.01
1791 1819 3.360758 GCAACGAAATGAAATCCGACAAC 59.639 43.478 0.00 0.00 0.00 3.32
1859 1889 8.528917 TCAAAGGAATTCGGTATGATAATACG 57.471 34.615 0.00 0.00 0.00 3.06
1872 1902 7.167635 GGTATGATAATACGTGTGACTGACTTG 59.832 40.741 0.00 0.00 0.00 3.16
1882 1913 5.277297 CGTGTGACTGACTTGAATTGCTTTA 60.277 40.000 0.00 0.00 0.00 1.85
1975 2006 1.518325 TGACTACAACAATGTGGCCG 58.482 50.000 0.00 0.00 41.40 6.13
2142 2173 2.879462 CGCAAGTACCTCGACGGC 60.879 66.667 0.00 0.00 35.61 5.68
2149 2180 2.707849 TACCTCGACGGCCTGAAGC 61.708 63.158 0.00 0.00 42.60 3.86
2150 2181 4.069232 CCTCGACGGCCTGAAGCA 62.069 66.667 0.00 0.00 46.50 3.91
2164 2195 2.788191 GAAGCAGGTCACGGTGAGGG 62.788 65.000 11.83 5.23 0.00 4.30
2241 2272 4.194720 GTGATCGAGCTCGGCGGT 62.195 66.667 33.98 18.40 40.29 5.68
2341 2372 1.581954 CAGCTCCTCGTCGTCAACT 59.418 57.895 0.00 0.00 0.00 3.16
2529 2560 1.520666 CGGGGACTACACCATGGTC 59.479 63.158 16.53 2.71 40.12 4.02
2724 2755 1.302271 GGGGTTCAAGGTGGTCGTC 60.302 63.158 0.00 0.00 0.00 4.20
2935 2966 2.147387 ATGGGGCTCCGGTACATCC 61.147 63.158 0.00 1.49 35.24 3.51
3153 3184 7.569591 CGGTAGAGAGTTTGATTGAACAAAGAC 60.570 40.741 0.00 0.00 39.83 3.01
3157 3188 6.662616 AGAGTTTGATTGAACAAAGACGATG 58.337 36.000 0.00 0.00 39.83 3.84
3234 3291 8.255111 AGAATAGTCTCAATGTACATGGATGA 57.745 34.615 13.44 10.48 0.00 2.92
3323 3616 8.702408 ACGTTTCTTTTGTTTTGTTAAAAAGC 57.298 26.923 0.00 0.00 39.60 3.51
3388 3681 6.599356 AACCAATAAATGTTTACAGGACCC 57.401 37.500 10.34 0.00 0.00 4.46
3389 3682 4.703093 ACCAATAAATGTTTACAGGACCCG 59.297 41.667 10.34 0.00 0.00 5.28
3392 3701 2.088950 AATGTTTACAGGACCCGTCG 57.911 50.000 0.00 0.00 0.00 5.12
3412 3721 1.841663 CGCAGGACAAAACTCCACCG 61.842 60.000 0.00 0.00 31.94 4.94
3423 3732 1.652947 ACTCCACCGATAAACCACCT 58.347 50.000 0.00 0.00 0.00 4.00
3428 3737 2.486592 CCACCGATAAACCACCTGTTTC 59.513 50.000 0.00 0.00 43.74 2.78
3429 3738 3.408634 CACCGATAAACCACCTGTTTCT 58.591 45.455 0.00 0.00 43.74 2.52
3430 3739 3.818773 CACCGATAAACCACCTGTTTCTT 59.181 43.478 0.00 0.00 43.74 2.52
3431 3740 4.277423 CACCGATAAACCACCTGTTTCTTT 59.723 41.667 0.00 0.00 43.74 2.52
3432 3741 5.470777 CACCGATAAACCACCTGTTTCTTTA 59.529 40.000 0.00 0.00 43.74 1.85
3433 3742 5.471116 ACCGATAAACCACCTGTTTCTTTAC 59.529 40.000 0.00 0.00 43.74 2.01
3434 3743 5.704053 CCGATAAACCACCTGTTTCTTTACT 59.296 40.000 0.00 0.00 43.74 2.24
3435 3744 6.128363 CCGATAAACCACCTGTTTCTTTACTC 60.128 42.308 0.00 0.00 43.74 2.59
3436 3745 6.649557 CGATAAACCACCTGTTTCTTTACTCT 59.350 38.462 0.00 0.00 43.74 3.24
3437 3746 7.172703 CGATAAACCACCTGTTTCTTTACTCTT 59.827 37.037 0.00 0.00 43.74 2.85
3438 3747 9.498176 GATAAACCACCTGTTTCTTTACTCTTA 57.502 33.333 0.00 0.00 43.74 2.10
3441 3750 9.856162 AAACCACCTGTTTCTTTACTCTTATAA 57.144 29.630 0.00 0.00 43.74 0.98
3442 3751 9.856162 AACCACCTGTTTCTTTACTCTTATAAA 57.144 29.630 0.00 0.00 31.47 1.40
3443 3752 9.856162 ACCACCTGTTTCTTTACTCTTATAAAA 57.144 29.630 0.00 0.00 0.00 1.52
3464 3773 6.399639 AAAAACAAAGTCGGTAATGATGGT 57.600 33.333 0.00 0.00 0.00 3.55
3465 3774 5.371115 AAACAAAGTCGGTAATGATGGTG 57.629 39.130 0.00 0.00 0.00 4.17
3466 3775 4.015872 ACAAAGTCGGTAATGATGGTGT 57.984 40.909 0.00 0.00 0.00 4.16
3467 3776 3.751175 ACAAAGTCGGTAATGATGGTGTG 59.249 43.478 0.00 0.00 0.00 3.82
3468 3777 3.695830 AAGTCGGTAATGATGGTGTGT 57.304 42.857 0.00 0.00 0.00 3.72
3469 3778 3.695830 AGTCGGTAATGATGGTGTGTT 57.304 42.857 0.00 0.00 0.00 3.32
3470 3779 4.015872 AGTCGGTAATGATGGTGTGTTT 57.984 40.909 0.00 0.00 0.00 2.83
3471 3780 3.751175 AGTCGGTAATGATGGTGTGTTTG 59.249 43.478 0.00 0.00 0.00 2.93
3472 3781 2.486203 TCGGTAATGATGGTGTGTTTGC 59.514 45.455 0.00 0.00 0.00 3.68
3473 3782 2.415357 CGGTAATGATGGTGTGTTTGCC 60.415 50.000 0.00 0.00 0.00 4.52
3474 3783 2.560542 GGTAATGATGGTGTGTTTGCCA 59.439 45.455 0.00 0.00 39.33 4.92
3476 3785 4.322650 GGTAATGATGGTGTGTTTGCCATT 60.323 41.667 0.00 0.00 44.73 3.16
3477 3786 3.598019 ATGATGGTGTGTTTGCCATTC 57.402 42.857 0.00 0.00 44.73 2.67
3478 3787 2.596346 TGATGGTGTGTTTGCCATTCT 58.404 42.857 0.00 0.00 44.73 2.40
3479 3788 2.296752 TGATGGTGTGTTTGCCATTCTG 59.703 45.455 0.00 0.00 44.73 3.02
3480 3789 0.388659 TGGTGTGTTTGCCATTCTGC 59.611 50.000 0.00 0.00 0.00 4.26
3481 3790 0.388659 GGTGTGTTTGCCATTCTGCA 59.611 50.000 0.00 0.00 40.07 4.41
3490 3799 2.517959 TGCCATTCTGCAATATAGGCC 58.482 47.619 12.50 0.00 38.56 5.19
3491 3800 1.470098 GCCATTCTGCAATATAGGCCG 59.530 52.381 0.00 0.00 34.71 6.13
3492 3801 2.783135 CCATTCTGCAATATAGGCCGT 58.217 47.619 0.00 0.00 0.00 5.68
3493 3802 3.149196 CCATTCTGCAATATAGGCCGTT 58.851 45.455 0.00 0.00 0.00 4.44
3494 3803 3.189287 CCATTCTGCAATATAGGCCGTTC 59.811 47.826 0.00 0.00 0.00 3.95
3495 3804 2.148916 TCTGCAATATAGGCCGTTCG 57.851 50.000 0.00 0.00 0.00 3.95
3496 3805 1.684450 TCTGCAATATAGGCCGTTCGA 59.316 47.619 0.00 0.00 0.00 3.71
3497 3806 2.299013 TCTGCAATATAGGCCGTTCGAT 59.701 45.455 0.00 0.00 0.00 3.59
3498 3807 3.067106 CTGCAATATAGGCCGTTCGATT 58.933 45.455 0.00 0.00 0.00 3.34
3499 3808 3.472652 TGCAATATAGGCCGTTCGATTT 58.527 40.909 0.00 0.00 0.00 2.17
3500 3809 4.633175 TGCAATATAGGCCGTTCGATTTA 58.367 39.130 0.00 0.00 0.00 1.40
3501 3810 5.242434 TGCAATATAGGCCGTTCGATTTAT 58.758 37.500 0.00 0.00 0.00 1.40
3502 3811 6.399743 TGCAATATAGGCCGTTCGATTTATA 58.600 36.000 0.00 0.00 0.00 0.98
3503 3812 7.045416 TGCAATATAGGCCGTTCGATTTATAT 58.955 34.615 0.00 0.00 0.00 0.86
3504 3813 7.223971 TGCAATATAGGCCGTTCGATTTATATC 59.776 37.037 0.00 0.00 0.00 1.63
3505 3814 7.438459 GCAATATAGGCCGTTCGATTTATATCT 59.562 37.037 0.00 0.00 0.00 1.98
3506 3815 8.755941 CAATATAGGCCGTTCGATTTATATCTG 58.244 37.037 0.00 0.00 0.00 2.90
3507 3816 4.866508 AGGCCGTTCGATTTATATCTGA 57.133 40.909 0.00 0.00 0.00 3.27
3508 3817 5.407407 AGGCCGTTCGATTTATATCTGAT 57.593 39.130 0.00 0.00 0.00 2.90
3509 3818 5.171476 AGGCCGTTCGATTTATATCTGATG 58.829 41.667 0.00 0.00 0.00 3.07
3510 3819 4.330074 GGCCGTTCGATTTATATCTGATGG 59.670 45.833 0.00 0.00 0.00 3.51
3511 3820 5.168569 GCCGTTCGATTTATATCTGATGGA 58.831 41.667 0.00 0.00 0.00 3.41
3512 3821 5.812642 GCCGTTCGATTTATATCTGATGGAT 59.187 40.000 0.00 0.00 38.38 3.41
3513 3822 6.978659 GCCGTTCGATTTATATCTGATGGATA 59.021 38.462 0.00 0.00 40.69 2.59
3514 3823 7.168302 GCCGTTCGATTTATATCTGATGGATAG 59.832 40.741 0.00 0.00 39.89 2.08
3515 3824 7.649705 CCGTTCGATTTATATCTGATGGATAGG 59.350 40.741 0.00 0.00 39.89 2.57
3516 3825 8.406297 CGTTCGATTTATATCTGATGGATAGGA 58.594 37.037 0.00 0.00 39.89 2.94
3528 3837 7.739825 TCTGATGGATAGGAAAGAAACTATGG 58.260 38.462 0.00 0.00 30.43 2.74
3529 3838 6.299141 TGATGGATAGGAAAGAAACTATGGC 58.701 40.000 0.00 0.00 30.43 4.40
3530 3839 5.708736 TGGATAGGAAAGAAACTATGGCA 57.291 39.130 0.00 0.00 30.43 4.92
3531 3840 6.073447 TGGATAGGAAAGAAACTATGGCAA 57.927 37.500 0.00 0.00 30.43 4.52
3532 3841 6.672593 TGGATAGGAAAGAAACTATGGCAAT 58.327 36.000 0.00 0.00 30.43 3.56
3533 3842 7.125391 TGGATAGGAAAGAAACTATGGCAATT 58.875 34.615 0.00 0.00 30.43 2.32
3534 3843 7.619302 TGGATAGGAAAGAAACTATGGCAATTT 59.381 33.333 0.00 0.00 30.43 1.82
3535 3844 8.478066 GGATAGGAAAGAAACTATGGCAATTTT 58.522 33.333 0.00 0.00 30.43 1.82
3536 3845 9.305925 GATAGGAAAGAAACTATGGCAATTTTG 57.694 33.333 0.00 0.00 30.43 2.44
3537 3846 7.301868 AGGAAAGAAACTATGGCAATTTTGA 57.698 32.000 0.00 0.00 0.00 2.69
3538 3847 7.734942 AGGAAAGAAACTATGGCAATTTTGAA 58.265 30.769 0.00 0.00 0.00 2.69
3539 3848 8.210265 AGGAAAGAAACTATGGCAATTTTGAAA 58.790 29.630 0.00 0.00 0.00 2.69
3540 3849 8.835439 GGAAAGAAACTATGGCAATTTTGAAAA 58.165 29.630 0.00 0.00 0.00 2.29
3561 3870 4.967084 AAAAATACCCACACCCCTTTTC 57.033 40.909 0.00 0.00 0.00 2.29
3562 3871 3.621682 AAATACCCACACCCCTTTTCA 57.378 42.857 0.00 0.00 0.00 2.69
3563 3872 2.597578 ATACCCACACCCCTTTTCAC 57.402 50.000 0.00 0.00 0.00 3.18
3564 3873 1.223501 TACCCACACCCCTTTTCACA 58.776 50.000 0.00 0.00 0.00 3.58
3565 3874 0.560688 ACCCACACCCCTTTTCACAT 59.439 50.000 0.00 0.00 0.00 3.21
3566 3875 1.062505 ACCCACACCCCTTTTCACATT 60.063 47.619 0.00 0.00 0.00 2.71
3567 3876 2.046292 CCCACACCCCTTTTCACATTT 58.954 47.619 0.00 0.00 0.00 2.32
3568 3877 2.224257 CCCACACCCCTTTTCACATTTG 60.224 50.000 0.00 0.00 0.00 2.32
3569 3878 2.433970 CCACACCCCTTTTCACATTTGT 59.566 45.455 0.00 0.00 0.00 2.83
3570 3879 3.639094 CCACACCCCTTTTCACATTTGTA 59.361 43.478 0.00 0.00 0.00 2.41
3571 3880 4.100189 CCACACCCCTTTTCACATTTGTAA 59.900 41.667 0.00 0.00 0.00 2.41
3572 3881 5.395768 CCACACCCCTTTTCACATTTGTAAA 60.396 40.000 0.00 0.00 0.00 2.01
3573 3882 6.287525 CACACCCCTTTTCACATTTGTAAAT 58.712 36.000 0.00 0.00 0.00 1.40
3574 3883 7.437748 CACACCCCTTTTCACATTTGTAAATA 58.562 34.615 0.00 0.00 0.00 1.40
3575 3884 7.928706 CACACCCCTTTTCACATTTGTAAATAA 59.071 33.333 0.00 0.00 0.00 1.40
3576 3885 8.147704 ACACCCCTTTTCACATTTGTAAATAAG 58.852 33.333 0.00 0.00 0.00 1.73
3577 3886 7.602265 CACCCCTTTTCACATTTGTAAATAAGG 59.398 37.037 8.09 8.09 0.00 2.69
3578 3887 6.593770 CCCCTTTTCACATTTGTAAATAAGGC 59.406 38.462 9.04 0.00 0.00 4.35
3579 3888 7.386059 CCCTTTTCACATTTGTAAATAAGGCT 58.614 34.615 9.04 0.00 0.00 4.58
3580 3889 7.877612 CCCTTTTCACATTTGTAAATAAGGCTT 59.122 33.333 4.58 4.58 0.00 4.35
3581 3890 9.271828 CCTTTTCACATTTGTAAATAAGGCTTT 57.728 29.630 4.45 0.00 0.00 3.51
3583 3892 8.825667 TTTCACATTTGTAAATAAGGCTTTCC 57.174 30.769 4.45 0.00 0.00 3.13
3584 3893 6.930731 TCACATTTGTAAATAAGGCTTTCCC 58.069 36.000 4.45 0.00 0.00 3.97
3586 3895 7.035612 CACATTTGTAAATAAGGCTTTCCCTC 58.964 38.462 4.45 0.00 45.62 4.30
3587 3896 5.890424 TTTGTAAATAAGGCTTTCCCTCG 57.110 39.130 4.45 0.00 45.62 4.63
3588 3897 4.563140 TGTAAATAAGGCTTTCCCTCGT 57.437 40.909 4.45 0.00 45.62 4.18
3589 3898 4.913784 TGTAAATAAGGCTTTCCCTCGTT 58.086 39.130 4.45 0.00 45.62 3.85
3590 3899 4.939439 TGTAAATAAGGCTTTCCCTCGTTC 59.061 41.667 4.45 0.00 45.62 3.95
3591 3900 3.713826 AATAAGGCTTTCCCTCGTTCA 57.286 42.857 4.45 0.00 45.62 3.18
3592 3901 3.713826 ATAAGGCTTTCCCTCGTTCAA 57.286 42.857 4.45 0.00 45.62 2.69
3593 3902 1.605753 AAGGCTTTCCCTCGTTCAAC 58.394 50.000 0.00 0.00 45.62 3.18
3594 3903 0.250770 AGGCTTTCCCTCGTTCAACC 60.251 55.000 0.00 0.00 41.21 3.77
3595 3904 0.250770 GGCTTTCCCTCGTTCAACCT 60.251 55.000 0.00 0.00 0.00 3.50
3596 3905 1.605753 GCTTTCCCTCGTTCAACCTT 58.394 50.000 0.00 0.00 0.00 3.50
3597 3906 1.954382 GCTTTCCCTCGTTCAACCTTT 59.046 47.619 0.00 0.00 0.00 3.11
3598 3907 2.361119 GCTTTCCCTCGTTCAACCTTTT 59.639 45.455 0.00 0.00 0.00 2.27
3599 3908 3.550233 GCTTTCCCTCGTTCAACCTTTTC 60.550 47.826 0.00 0.00 0.00 2.29
3600 3909 3.570912 TTCCCTCGTTCAACCTTTTCT 57.429 42.857 0.00 0.00 0.00 2.52
3601 3910 3.121738 TCCCTCGTTCAACCTTTTCTC 57.878 47.619 0.00 0.00 0.00 2.87
3602 3911 2.152016 CCCTCGTTCAACCTTTTCTCC 58.848 52.381 0.00 0.00 0.00 3.71
3603 3912 2.152016 CCTCGTTCAACCTTTTCTCCC 58.848 52.381 0.00 0.00 0.00 4.30
3604 3913 2.486548 CCTCGTTCAACCTTTTCTCCCA 60.487 50.000 0.00 0.00 0.00 4.37
3605 3914 3.211045 CTCGTTCAACCTTTTCTCCCAA 58.789 45.455 0.00 0.00 0.00 4.12
3606 3915 3.622630 TCGTTCAACCTTTTCTCCCAAA 58.377 40.909 0.00 0.00 0.00 3.28
3607 3916 4.017808 TCGTTCAACCTTTTCTCCCAAAA 58.982 39.130 0.00 0.00 0.00 2.44
3608 3917 4.463186 TCGTTCAACCTTTTCTCCCAAAAA 59.537 37.500 0.00 0.00 0.00 1.94
3638 3947 9.961265 AACAATTTATACAGATGCATCTTGATG 57.039 29.630 26.70 18.04 34.22 3.07
3639 3948 9.128404 ACAATTTATACAGATGCATCTTGATGT 57.872 29.630 26.70 22.48 34.22 3.06
3640 3949 9.961265 CAATTTATACAGATGCATCTTGATGTT 57.039 29.630 26.70 14.56 34.22 2.71
3642 3951 7.734924 TTATACAGATGCATCTTGATGTTCC 57.265 36.000 26.70 0.00 34.22 3.62
3643 3952 2.941064 ACAGATGCATCTTGATGTTCCG 59.059 45.455 26.70 14.05 34.22 4.30
3644 3953 2.941064 CAGATGCATCTTGATGTTCCGT 59.059 45.455 26.70 0.00 34.22 4.69
3645 3954 2.941064 AGATGCATCTTGATGTTCCGTG 59.059 45.455 23.75 0.00 31.97 4.94
3646 3955 0.804364 TGCATCTTGATGTTCCGTGC 59.196 50.000 11.61 0.00 0.00 5.34
3647 3956 0.804364 GCATCTTGATGTTCCGTGCA 59.196 50.000 11.61 0.00 0.00 4.57
3648 3957 1.199789 GCATCTTGATGTTCCGTGCAA 59.800 47.619 11.61 0.00 0.00 4.08
3649 3958 2.855180 CATCTTGATGTTCCGTGCAAC 58.145 47.619 0.00 0.00 0.00 4.17
3661 3970 2.780595 GTGCAACGTATGGGCATCT 58.219 52.632 6.80 0.00 40.05 2.90
3662 3971 1.094785 GTGCAACGTATGGGCATCTT 58.905 50.000 6.80 0.00 40.05 2.40
3663 3972 1.093972 TGCAACGTATGGGCATCTTG 58.906 50.000 0.00 0.00 31.58 3.02
3664 3973 1.339535 TGCAACGTATGGGCATCTTGA 60.340 47.619 0.00 0.00 31.58 3.02
3665 3974 1.949525 GCAACGTATGGGCATCTTGAT 59.050 47.619 0.00 0.00 0.00 2.57
3666 3975 3.138304 GCAACGTATGGGCATCTTGATA 58.862 45.455 0.00 0.00 0.00 2.15
3667 3976 3.187227 GCAACGTATGGGCATCTTGATAG 59.813 47.826 0.00 0.00 0.00 2.08
3668 3977 4.380531 CAACGTATGGGCATCTTGATAGT 58.619 43.478 0.00 0.00 0.00 2.12
3669 3978 4.689612 ACGTATGGGCATCTTGATAGTT 57.310 40.909 0.00 0.00 0.00 2.24
3672 3981 6.588204 ACGTATGGGCATCTTGATAGTTAAA 58.412 36.000 0.00 0.00 0.00 1.52
3776 4094 9.453830 ACTAATAATTTCTTCATCTAGGGGAGT 57.546 33.333 0.00 0.00 0.00 3.85
3814 4132 8.915036 ACTTCTAGAATACAACGAGTATGGAAT 58.085 33.333 5.44 0.00 42.56 3.01
3881 4199 3.202097 GGCTGCTAAGAGATTCTTGGAC 58.798 50.000 6.39 0.00 37.16 4.02
3990 4309 4.039973 CAGTAGTAACCTTGTTGGAGTCCA 59.960 45.833 8.12 8.12 39.71 4.02
3991 4310 4.657039 AGTAGTAACCTTGTTGGAGTCCAA 59.343 41.667 21.05 21.05 41.69 3.53
3992 4311 4.513406 AGTAACCTTGTTGGAGTCCAAA 57.487 40.909 26.19 11.06 45.73 3.28
3993 4312 4.204799 AGTAACCTTGTTGGAGTCCAAAC 58.795 43.478 26.19 17.74 45.73 2.93
3994 4313 3.382083 AACCTTGTTGGAGTCCAAACT 57.618 42.857 26.19 4.38 45.73 2.66
3995 4314 2.654863 ACCTTGTTGGAGTCCAAACTG 58.345 47.619 26.19 16.99 45.73 3.16
3996 4315 1.956477 CCTTGTTGGAGTCCAAACTGG 59.044 52.381 26.19 21.36 45.73 4.00
3997 4316 2.654863 CTTGTTGGAGTCCAAACTGGT 58.345 47.619 26.19 0.00 45.73 4.00
3998 4317 2.051334 TGTTGGAGTCCAAACTGGTG 57.949 50.000 26.19 0.00 45.73 4.17
3999 4318 0.668535 GTTGGAGTCCAAACTGGTGC 59.331 55.000 26.19 8.36 45.73 5.01
4000 4319 0.817634 TTGGAGTCCAAACTGGTGCG 60.818 55.000 22.59 0.00 40.92 5.34
4001 4320 2.617274 GGAGTCCAAACTGGTGCGC 61.617 63.158 3.60 0.00 39.03 6.09
4002 4321 1.598130 GAGTCCAAACTGGTGCGCT 60.598 57.895 9.73 0.00 39.03 5.92
4003 4322 1.152963 AGTCCAAACTGGTGCGCTT 60.153 52.632 9.73 0.00 39.03 4.68
4004 4323 1.008538 GTCCAAACTGGTGCGCTTG 60.009 57.895 9.73 3.04 39.03 4.01
4005 4324 1.453015 TCCAAACTGGTGCGCTTGT 60.453 52.632 9.73 0.00 39.03 3.16
4006 4325 0.179043 TCCAAACTGGTGCGCTTGTA 60.179 50.000 9.73 0.00 39.03 2.41
4007 4326 0.881118 CCAAACTGGTGCGCTTGTAT 59.119 50.000 9.73 0.00 31.35 2.29
4008 4327 1.269448 CCAAACTGGTGCGCTTGTATT 59.731 47.619 9.73 0.00 31.35 1.89
4009 4328 2.288152 CCAAACTGGTGCGCTTGTATTT 60.288 45.455 9.73 1.06 31.35 1.40
4010 4329 2.704725 AACTGGTGCGCTTGTATTTG 57.295 45.000 9.73 0.00 0.00 2.32
4011 4330 1.604604 ACTGGTGCGCTTGTATTTGT 58.395 45.000 9.73 0.00 0.00 2.83
4012 4331 2.773487 ACTGGTGCGCTTGTATTTGTA 58.227 42.857 9.73 0.00 0.00 2.41
4013 4332 3.343617 ACTGGTGCGCTTGTATTTGTAT 58.656 40.909 9.73 0.00 0.00 2.29
4014 4333 3.756434 ACTGGTGCGCTTGTATTTGTATT 59.244 39.130 9.73 0.00 0.00 1.89
4015 4334 4.142687 ACTGGTGCGCTTGTATTTGTATTC 60.143 41.667 9.73 0.00 0.00 1.75
4016 4335 3.127895 TGGTGCGCTTGTATTTGTATTCC 59.872 43.478 9.73 0.00 0.00 3.01
4017 4336 3.488553 GGTGCGCTTGTATTTGTATTCCC 60.489 47.826 9.73 0.00 0.00 3.97
4018 4337 2.353269 TGCGCTTGTATTTGTATTCCCG 59.647 45.455 9.73 0.00 0.00 5.14
4019 4338 2.853281 GCGCTTGTATTTGTATTCCCGC 60.853 50.000 0.00 0.00 0.00 6.13
4020 4339 2.286772 CGCTTGTATTTGTATTCCCGCC 60.287 50.000 0.00 0.00 0.00 6.13
4021 4340 2.949644 GCTTGTATTTGTATTCCCGCCT 59.050 45.455 0.00 0.00 0.00 5.52
4022 4341 3.380320 GCTTGTATTTGTATTCCCGCCTT 59.620 43.478 0.00 0.00 0.00 4.35
4023 4342 4.497507 GCTTGTATTTGTATTCCCGCCTTC 60.498 45.833 0.00 0.00 0.00 3.46
4024 4343 4.497291 TGTATTTGTATTCCCGCCTTCT 57.503 40.909 0.00 0.00 0.00 2.85
4025 4344 5.617528 TGTATTTGTATTCCCGCCTTCTA 57.382 39.130 0.00 0.00 0.00 2.10
4026 4345 5.607477 TGTATTTGTATTCCCGCCTTCTAG 58.393 41.667 0.00 0.00 0.00 2.43
4027 4346 3.553828 TTTGTATTCCCGCCTTCTAGG 57.446 47.619 0.00 0.00 38.80 3.02
4049 4368 5.485662 GCTGTTTGCCTAGTGGTATTAAG 57.514 43.478 0.00 0.00 35.15 1.85
4050 4369 5.183228 GCTGTTTGCCTAGTGGTATTAAGA 58.817 41.667 0.00 0.00 35.15 2.10
4051 4370 5.064834 GCTGTTTGCCTAGTGGTATTAAGAC 59.935 44.000 0.00 0.00 35.15 3.01
4052 4371 6.116711 TGTTTGCCTAGTGGTATTAAGACA 57.883 37.500 2.17 0.00 35.27 3.41
4053 4372 6.170506 TGTTTGCCTAGTGGTATTAAGACAG 58.829 40.000 2.17 0.00 35.27 3.51
4054 4373 6.014070 TGTTTGCCTAGTGGTATTAAGACAGA 60.014 38.462 2.17 0.00 35.27 3.41
4055 4374 6.808321 TTGCCTAGTGGTATTAAGACAGAT 57.192 37.500 2.17 0.00 35.27 2.90
4056 4375 6.406692 TGCCTAGTGGTATTAAGACAGATC 57.593 41.667 2.17 0.00 35.27 2.75
4057 4376 5.897250 TGCCTAGTGGTATTAAGACAGATCA 59.103 40.000 2.17 0.00 35.27 2.92
4058 4377 6.183360 TGCCTAGTGGTATTAAGACAGATCAC 60.183 42.308 2.17 1.33 35.27 3.06
4059 4378 6.041069 GCCTAGTGGTATTAAGACAGATCACT 59.959 42.308 12.43 12.43 37.82 3.41
4060 4379 7.653647 CCTAGTGGTATTAAGACAGATCACTC 58.346 42.308 11.50 0.00 36.00 3.51
4061 4380 6.472686 AGTGGTATTAAGACAGATCACTCC 57.527 41.667 2.17 0.00 29.51 3.85
4062 4381 5.364157 AGTGGTATTAAGACAGATCACTCCC 59.636 44.000 2.17 0.00 29.51 4.30
4063 4382 5.128827 GTGGTATTAAGACAGATCACTCCCA 59.871 44.000 2.17 0.00 0.00 4.37
4064 4383 5.724370 TGGTATTAAGACAGATCACTCCCAA 59.276 40.000 2.17 0.00 0.00 4.12
4065 4384 6.049790 GGTATTAAGACAGATCACTCCCAAC 58.950 44.000 2.17 0.00 0.00 3.77
4066 4385 4.553330 TTAAGACAGATCACTCCCAACC 57.447 45.455 0.00 0.00 0.00 3.77
4067 4386 2.030027 AGACAGATCACTCCCAACCA 57.970 50.000 0.00 0.00 0.00 3.67
4068 4387 1.905215 AGACAGATCACTCCCAACCAG 59.095 52.381 0.00 0.00 0.00 4.00
4069 4388 0.987294 ACAGATCACTCCCAACCAGG 59.013 55.000 0.00 0.00 37.03 4.45
4070 4389 1.279496 CAGATCACTCCCAACCAGGA 58.721 55.000 0.00 0.00 41.22 3.86
4071 4390 1.065854 CAGATCACTCCCAACCAGGAC 60.066 57.143 0.00 0.00 41.22 3.85
4072 4391 0.108138 GATCACTCCCAACCAGGACG 60.108 60.000 0.00 0.00 41.22 4.79
4073 4392 0.544357 ATCACTCCCAACCAGGACGA 60.544 55.000 0.00 0.00 41.22 4.20
4074 4393 1.185618 TCACTCCCAACCAGGACGAG 61.186 60.000 0.00 0.00 41.22 4.18
4075 4394 1.152312 ACTCCCAACCAGGACGAGT 60.152 57.895 0.00 0.00 41.22 4.18
4076 4395 1.293498 CTCCCAACCAGGACGAGTG 59.707 63.158 0.00 0.00 41.22 3.51
4077 4396 2.358737 CCCAACCAGGACGAGTGC 60.359 66.667 0.00 0.00 41.22 4.40
4078 4397 2.738521 CCAACCAGGACGAGTGCG 60.739 66.667 0.00 0.00 41.22 5.34
4079 4398 2.338620 CAACCAGGACGAGTGCGA 59.661 61.111 0.00 0.00 41.64 5.10
4080 4399 1.079819 CAACCAGGACGAGTGCGAT 60.080 57.895 0.00 0.00 41.64 4.58
4081 4400 0.670546 CAACCAGGACGAGTGCGATT 60.671 55.000 0.00 0.00 41.64 3.34
4082 4401 0.034896 AACCAGGACGAGTGCGATTT 59.965 50.000 0.00 0.00 41.64 2.17
4083 4402 0.034896 ACCAGGACGAGTGCGATTTT 59.965 50.000 0.00 0.00 41.64 1.82
4084 4403 1.274167 ACCAGGACGAGTGCGATTTTA 59.726 47.619 0.00 0.00 41.64 1.52
4085 4404 1.927174 CCAGGACGAGTGCGATTTTAG 59.073 52.381 0.00 0.00 41.64 1.85
4086 4405 1.927174 CAGGACGAGTGCGATTTTAGG 59.073 52.381 0.00 0.00 41.64 2.69
4087 4406 1.134788 AGGACGAGTGCGATTTTAGGG 60.135 52.381 0.00 0.00 41.64 3.53
4088 4407 1.405121 GGACGAGTGCGATTTTAGGGT 60.405 52.381 0.00 0.00 41.64 4.34
4089 4408 1.659098 GACGAGTGCGATTTTAGGGTG 59.341 52.381 0.00 0.00 41.64 4.61
4090 4409 1.274167 ACGAGTGCGATTTTAGGGTGA 59.726 47.619 0.00 0.00 41.64 4.02
4091 4410 2.093658 ACGAGTGCGATTTTAGGGTGAT 60.094 45.455 0.00 0.00 41.64 3.06
4092 4411 2.285220 CGAGTGCGATTTTAGGGTGATG 59.715 50.000 0.00 0.00 40.82 3.07
4093 4412 2.614057 GAGTGCGATTTTAGGGTGATGG 59.386 50.000 0.00 0.00 0.00 3.51
4094 4413 2.026262 AGTGCGATTTTAGGGTGATGGT 60.026 45.455 0.00 0.00 0.00 3.55
4095 4414 2.354821 GTGCGATTTTAGGGTGATGGTC 59.645 50.000 0.00 0.00 0.00 4.02
4096 4415 2.238646 TGCGATTTTAGGGTGATGGTCT 59.761 45.455 0.00 0.00 0.00 3.85
4097 4416 2.614057 GCGATTTTAGGGTGATGGTCTG 59.386 50.000 0.00 0.00 0.00 3.51
4098 4417 2.614057 CGATTTTAGGGTGATGGTCTGC 59.386 50.000 0.00 0.00 0.00 4.26
4099 4418 3.620488 GATTTTAGGGTGATGGTCTGCA 58.380 45.455 0.00 0.00 0.00 4.41
4100 4419 2.787473 TTTAGGGTGATGGTCTGCAG 57.213 50.000 7.63 7.63 0.00 4.41
4101 4420 0.911769 TTAGGGTGATGGTCTGCAGG 59.088 55.000 15.13 0.00 0.00 4.85
4102 4421 0.982852 TAGGGTGATGGTCTGCAGGG 60.983 60.000 15.13 0.00 0.00 4.45
4103 4422 2.439156 GGTGATGGTCTGCAGGGC 60.439 66.667 15.13 7.27 0.00 5.19
4104 4423 2.352422 GTGATGGTCTGCAGGGCA 59.648 61.111 15.13 2.42 36.92 5.36
4105 4424 2.042831 GTGATGGTCTGCAGGGCAC 61.043 63.158 15.13 11.07 33.79 5.01
4106 4425 2.821366 GATGGTCTGCAGGGCACG 60.821 66.667 15.13 0.00 33.79 5.34
4107 4426 3.612247 GATGGTCTGCAGGGCACGT 62.612 63.158 15.13 3.12 33.79 4.49
4117 4436 2.331451 GGGCACGTGCACAAAGAC 59.669 61.111 38.60 20.85 45.57 3.01
4118 4437 2.186826 GGGCACGTGCACAAAGACT 61.187 57.895 38.60 0.00 45.57 3.24
4119 4438 1.724582 GGGCACGTGCACAAAGACTT 61.725 55.000 38.60 0.00 45.57 3.01
4120 4439 0.100503 GGCACGTGCACAAAGACTTT 59.899 50.000 38.60 0.00 44.36 2.66
4121 4440 1.469079 GGCACGTGCACAAAGACTTTT 60.469 47.619 38.60 0.00 44.36 2.27
4122 4441 1.846175 GCACGTGCACAAAGACTTTTC 59.154 47.619 34.52 0.00 41.59 2.29
4123 4442 2.101125 CACGTGCACAAAGACTTTTCG 58.899 47.619 18.64 0.02 0.00 3.46
4124 4443 1.735571 ACGTGCACAAAGACTTTTCGT 59.264 42.857 18.64 0.74 0.00 3.85
4125 4444 2.160813 ACGTGCACAAAGACTTTTCGTT 59.839 40.909 18.64 0.00 0.00 3.85
4126 4445 3.168193 CGTGCACAAAGACTTTTCGTTT 58.832 40.909 18.64 0.00 0.00 3.60
4127 4446 3.002149 CGTGCACAAAGACTTTTCGTTTG 60.002 43.478 18.64 0.00 37.23 2.93
4128 4447 3.917985 GTGCACAAAGACTTTTCGTTTGT 59.082 39.130 13.17 0.00 43.51 2.83
4129 4448 4.030195 GTGCACAAAGACTTTTCGTTTGTC 59.970 41.667 13.17 0.00 41.37 3.18
4130 4449 4.162812 GCACAAAGACTTTTCGTTTGTCA 58.837 39.130 0.00 0.00 41.37 3.58
4131 4450 4.798387 GCACAAAGACTTTTCGTTTGTCAT 59.202 37.500 0.00 0.00 41.37 3.06
4132 4451 5.052370 GCACAAAGACTTTTCGTTTGTCATC 60.052 40.000 0.00 0.00 41.37 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.837940 GTTCCCCTACCCTCCATCAC 59.162 60.000 0.00 0.00 0.00 3.06
7 8 0.722676 AGTTCCCCTACCCTCCATCA 59.277 55.000 0.00 0.00 0.00 3.07
92 93 6.012858 AGACAATACCCCTATCACTGTTGAAA 60.013 38.462 0.00 0.00 34.61 2.69
103 104 9.628500 GACTTTTATTTGAGACAATACCCCTAT 57.372 33.333 0.00 0.00 0.00 2.57
197 198 1.588674 TGTTGTCCATGAACACCGAC 58.411 50.000 0.00 0.00 0.00 4.79
213 214 8.458573 TGTAAAGTATGAAGAACCAACATGTT 57.541 30.769 4.92 4.92 0.00 2.71
222 223 6.963049 ACACCGATGTAAAGTATGAAGAAC 57.037 37.500 0.00 0.00 37.26 3.01
245 246 3.183754 CGTTGACGATGCCATAGTGTTA 58.816 45.455 0.00 0.00 43.02 2.41
272 273 5.652014 AGACTCAACTGTTGGAAAACATGAA 59.348 36.000 19.55 0.00 31.47 2.57
280 281 3.694072 CCACAAAGACTCAACTGTTGGAA 59.306 43.478 19.55 1.40 0.00 3.53
286 287 1.679139 TGCCCACAAAGACTCAACTG 58.321 50.000 0.00 0.00 0.00 3.16
310 311 0.108992 GATACGACGGTCAGGCAACA 60.109 55.000 9.10 0.00 41.41 3.33
319 320 1.555992 TCCCAAATTGGATACGACGGT 59.444 47.619 14.62 0.00 40.96 4.83
325 326 2.091885 TGGAGCCTCCCAAATTGGATAC 60.092 50.000 14.62 0.00 40.96 2.24
350 351 4.883585 TGATTGATTAGGTGAGGATTGCAC 59.116 41.667 0.00 0.00 35.56 4.57
351 352 5.114764 TGATTGATTAGGTGAGGATTGCA 57.885 39.130 0.00 0.00 0.00 4.08
361 362 7.447374 TTTTTCACACGATGATTGATTAGGT 57.553 32.000 0.00 0.00 37.11 3.08
375 376 6.426327 TGTCTCAACATGTATTTTTCACACG 58.574 36.000 0.00 0.00 0.00 4.49
377 378 7.309133 GGGATGTCTCAACATGTATTTTTCACA 60.309 37.037 0.00 0.00 46.20 3.58
378 379 7.029563 GGGATGTCTCAACATGTATTTTTCAC 58.970 38.462 0.00 0.00 46.20 3.18
393 394 0.034186 GGCAATGGTGGGATGTCTCA 60.034 55.000 0.00 0.00 0.00 3.27
394 395 0.034186 TGGCAATGGTGGGATGTCTC 60.034 55.000 0.00 0.00 0.00 3.36
400 401 2.349672 CGCAATGGCAATGGTGGGA 61.350 57.895 4.47 0.00 41.24 4.37
409 410 3.430862 GGTTCTCGCGCAATGGCA 61.431 61.111 8.75 0.00 41.24 4.92
410 411 4.179579 GGGTTCTCGCGCAATGGC 62.180 66.667 8.75 0.00 0.00 4.40
422 423 2.372172 TCCACTTCAAGAAGAGGGGTTC 59.628 50.000 21.02 0.00 45.44 3.62
434 438 2.032634 GTCGCCGCATCCACTTCAA 61.033 57.895 0.00 0.00 0.00 2.69
449 453 0.859232 CTTTTCTGGTGTCGGTGTCG 59.141 55.000 0.00 0.00 37.82 4.35
455 459 0.396811 ACCTCCCTTTTCTGGTGTCG 59.603 55.000 0.00 0.00 0.00 4.35
465 469 4.699522 GCCGCGTGACCTCCCTTT 62.700 66.667 4.92 0.00 0.00 3.11
613 618 8.930760 CCAAAAGAATATTTGAATGCCGTAAAA 58.069 29.630 1.56 0.00 41.73 1.52
621 626 9.865321 AGATGTCACCAAAAGAATATTTGAATG 57.135 29.630 1.56 0.89 41.73 2.67
629 634 9.527157 TTCCATAAAGATGTCACCAAAAGAATA 57.473 29.630 0.00 0.00 0.00 1.75
671 677 2.037208 GGGGGCCTTTGCAAGCTA 59.963 61.111 0.84 0.00 40.13 3.32
706 712 7.962995 ACTGTCTTATATCCAGAAGAAGTGA 57.037 36.000 0.00 0.00 33.93 3.41
772 778 2.401583 TCATCGTGACAAGGAATGGG 57.598 50.000 0.00 0.00 0.00 4.00
782 788 3.545633 GTTCTTTGCACTTCATCGTGAC 58.454 45.455 0.00 0.00 37.06 3.67
795 801 5.048921 GGAGGTTAGTTTACTGGTTCTTTGC 60.049 44.000 0.00 0.00 0.00 3.68
968 980 0.693049 AGCCTCCACGAAAATGGTCT 59.307 50.000 0.00 0.00 40.95 3.85
987 999 5.574443 CGCTCGCATCATCTTGATCTTATTA 59.426 40.000 0.00 0.00 34.28 0.98
988 1000 4.388165 CGCTCGCATCATCTTGATCTTATT 59.612 41.667 0.00 0.00 34.28 1.40
989 1001 3.925299 CGCTCGCATCATCTTGATCTTAT 59.075 43.478 0.00 0.00 34.28 1.73
1098 1110 1.489481 CCATCAGGTAGAGGAGCACA 58.511 55.000 0.00 0.00 0.00 4.57
1122 1134 0.951040 GGCTGTAGCTGAACTGCGTT 60.951 55.000 11.09 0.00 43.11 4.84
1188 1200 4.222124 TGAGCTCCTAAAGTTGATTCCC 57.778 45.455 12.15 0.00 0.00 3.97
1189 1201 4.637977 CCTTGAGCTCCTAAAGTTGATTCC 59.362 45.833 12.15 0.00 0.00 3.01
1208 1220 5.964958 TCATAAAACTTTCCTGCTCCTTG 57.035 39.130 0.00 0.00 0.00 3.61
1234 1252 6.599638 AGCACCAAGATAAAGATTGTAAGGAC 59.400 38.462 0.00 0.00 0.00 3.85
1244 1262 3.188460 GCGTTTGAGCACCAAGATAAAGA 59.812 43.478 0.00 0.00 35.94 2.52
1248 1266 2.076100 CTGCGTTTGAGCACCAAGATA 58.924 47.619 0.00 0.00 42.92 1.98
1262 1280 2.193536 GGTCCAACAAGGCTGCGTT 61.194 57.895 1.08 1.08 37.29 4.84
1284 1302 2.286872 CTTCAGCTGAATCGATTGCCT 58.713 47.619 28.57 5.71 33.01 4.75
1315 1333 1.673168 GATGGCTCCTTCGATGCTTT 58.327 50.000 0.00 0.00 0.00 3.51
1407 1426 4.274459 ACAGTAGCTTCAAAACTTCAGCAG 59.726 41.667 0.00 0.00 34.49 4.24
1465 1484 2.387757 CTTCTCCTCTTCCTCCTCCTG 58.612 57.143 0.00 0.00 0.00 3.86
1466 1485 1.290732 CCTTCTCCTCTTCCTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
1556 1578 8.451748 GTTCTTGGTTAATCAACAAGGTATCTC 58.548 37.037 0.00 0.00 36.29 2.75
1557 1579 7.942341 TGTTCTTGGTTAATCAACAAGGTATCT 59.058 33.333 0.00 0.00 36.29 1.98
1558 1580 8.106247 TGTTCTTGGTTAATCAACAAGGTATC 57.894 34.615 0.00 0.00 36.29 2.24
1567 1589 6.285224 TCGAGACTTGTTCTTGGTTAATCAA 58.715 36.000 0.33 0.33 36.46 2.57
1646 1668 0.035439 TCGAATTTCTCCCTGCCCAC 60.035 55.000 0.00 0.00 0.00 4.61
1670 1692 4.074970 CAGAAATGGCACCTAGTTGTTCT 58.925 43.478 0.00 0.00 0.00 3.01
1708 1730 6.127758 ACGATGGCTGCTAATAATTGAACAAA 60.128 34.615 0.00 0.00 0.00 2.83
1714 1736 4.273235 TGACACGATGGCTGCTAATAATTG 59.727 41.667 0.00 0.00 0.00 2.32
1715 1737 4.450976 TGACACGATGGCTGCTAATAATT 58.549 39.130 0.00 0.00 0.00 1.40
1716 1738 4.071961 TGACACGATGGCTGCTAATAAT 57.928 40.909 0.00 0.00 0.00 1.28
1717 1739 3.535280 TGACACGATGGCTGCTAATAA 57.465 42.857 0.00 0.00 0.00 1.40
1718 1740 3.069443 TGATGACACGATGGCTGCTAATA 59.931 43.478 0.00 0.00 0.00 0.98
1727 1752 6.380995 TCAGAAAAATTTGATGACACGATGG 58.619 36.000 0.00 0.00 0.00 3.51
1761 1786 3.574284 TTCATTTCGTTGCCTGATTGG 57.426 42.857 0.00 0.00 39.35 3.16
1809 1837 0.390472 CTGCCTCCTCGTTCTTGTCC 60.390 60.000 0.00 0.00 0.00 4.02
1859 1889 4.558538 AAGCAATTCAAGTCAGTCACAC 57.441 40.909 0.00 0.00 0.00 3.82
1872 1902 5.195001 TGACAGTTTGGGTAAAGCAATTC 57.805 39.130 0.00 0.00 0.00 2.17
1882 1913 2.702592 TCGAACTTGACAGTTTGGGT 57.297 45.000 3.09 0.00 43.79 4.51
1975 2006 2.202479 GCAAATCGGCTTGGCGTC 60.202 61.111 15.70 0.00 0.00 5.19
2149 2180 4.394712 GGCCCTCACCGTGACCTG 62.395 72.222 0.00 0.00 0.00 4.00
2164 2195 4.324991 ACGGGAGTTTGGGACGGC 62.325 66.667 0.00 0.00 43.33 5.68
2169 2200 3.047877 GCGTCACGGGAGTTTGGG 61.048 66.667 0.00 0.00 44.67 4.12
2205 2236 2.203070 ATCGCCGGGATGTTGAGC 60.203 61.111 2.18 0.00 32.92 4.26
2241 2272 1.972198 CCAGTAGTTGCCGGTGAGA 59.028 57.895 1.90 0.00 0.00 3.27
2401 2432 2.129823 TCGTTCTCAAAGTCCACGAC 57.870 50.000 0.00 0.00 35.05 4.34
2529 2560 2.408050 CTCAAGAACCTGGTGAAGTCG 58.592 52.381 0.00 0.00 0.00 4.18
2652 2683 0.537188 TGAGGATCTTCCGGCTGTTC 59.463 55.000 0.00 0.00 42.75 3.18
2868 2899 4.959596 GCGATCTCCTCCAGCCGC 62.960 72.222 0.00 0.00 36.97 6.53
3079 3110 1.408340 GGGCCTAAACCTCTCTACGTC 59.592 57.143 0.84 0.00 0.00 4.34
3128 3159 7.569591 CGTCTTTGTTCAATCAAACTCTCTACC 60.570 40.741 0.00 0.00 34.30 3.18
3371 3664 3.587923 CGACGGGTCCTGTAAACATTTA 58.412 45.455 2.38 0.00 0.00 1.40
3388 3681 2.127758 GTTTTGTCCTGCGCGACG 60.128 61.111 12.10 0.00 35.40 5.12
3389 3682 1.204312 GAGTTTTGTCCTGCGCGAC 59.796 57.895 12.10 5.61 0.00 5.19
3392 3701 1.282875 GTGGAGTTTTGTCCTGCGC 59.717 57.895 0.00 0.00 37.52 6.09
3397 3706 3.189910 GGTTTATCGGTGGAGTTTTGTCC 59.810 47.826 0.00 0.00 37.10 4.02
3401 3710 3.151554 GGTGGTTTATCGGTGGAGTTTT 58.848 45.455 0.00 0.00 0.00 2.43
3402 3711 2.374170 AGGTGGTTTATCGGTGGAGTTT 59.626 45.455 0.00 0.00 0.00 2.66
3441 3750 6.183360 ACACCATCATTACCGACTTTGTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
3442 3751 5.300792 ACACCATCATTACCGACTTTGTTTT 59.699 36.000 0.00 0.00 0.00 2.43
3443 3752 4.825085 ACACCATCATTACCGACTTTGTTT 59.175 37.500 0.00 0.00 0.00 2.83
3444 3753 4.215399 CACACCATCATTACCGACTTTGTT 59.785 41.667 0.00 0.00 0.00 2.83
3445 3754 3.751175 CACACCATCATTACCGACTTTGT 59.249 43.478 0.00 0.00 0.00 2.83
3446 3755 3.751175 ACACACCATCATTACCGACTTTG 59.249 43.478 0.00 0.00 0.00 2.77
3447 3756 4.015872 ACACACCATCATTACCGACTTT 57.984 40.909 0.00 0.00 0.00 2.66
3448 3757 3.695830 ACACACCATCATTACCGACTT 57.304 42.857 0.00 0.00 0.00 3.01
3449 3758 3.695830 AACACACCATCATTACCGACT 57.304 42.857 0.00 0.00 0.00 4.18
3450 3759 3.669557 GCAAACACACCATCATTACCGAC 60.670 47.826 0.00 0.00 0.00 4.79
3451 3760 2.486203 GCAAACACACCATCATTACCGA 59.514 45.455 0.00 0.00 0.00 4.69
3452 3761 2.415357 GGCAAACACACCATCATTACCG 60.415 50.000 0.00 0.00 0.00 4.02
3453 3762 2.560542 TGGCAAACACACCATCATTACC 59.439 45.455 0.00 0.00 0.00 2.85
3454 3763 3.932545 TGGCAAACACACCATCATTAC 57.067 42.857 0.00 0.00 0.00 1.89
3455 3764 4.771577 AGAATGGCAAACACACCATCATTA 59.228 37.500 0.00 0.00 46.04 1.90
3456 3765 3.579586 AGAATGGCAAACACACCATCATT 59.420 39.130 0.00 0.00 46.04 2.57
3457 3766 3.056393 CAGAATGGCAAACACACCATCAT 60.056 43.478 0.00 0.00 46.04 2.45
3458 3767 2.296752 CAGAATGGCAAACACACCATCA 59.703 45.455 0.00 0.00 46.04 3.07
3459 3768 2.927871 GCAGAATGGCAAACACACCATC 60.928 50.000 0.00 0.00 46.04 3.51
3461 3770 0.388659 GCAGAATGGCAAACACACCA 59.611 50.000 0.00 0.00 41.06 4.17
3462 3771 0.388659 TGCAGAATGGCAAACACACC 59.611 50.000 0.00 0.00 41.65 4.16
3463 3772 3.963676 TGCAGAATGGCAAACACAC 57.036 47.368 0.00 0.00 41.65 3.82
3470 3779 2.517959 GGCCTATATTGCAGAATGGCA 58.482 47.619 17.22 0.00 43.19 4.92
3471 3780 1.470098 CGGCCTATATTGCAGAATGGC 59.530 52.381 0.00 10.13 35.86 4.40
3472 3781 2.783135 ACGGCCTATATTGCAGAATGG 58.217 47.619 0.00 0.00 35.86 3.16
3473 3782 3.120546 CGAACGGCCTATATTGCAGAATG 60.121 47.826 0.00 0.00 40.87 2.67
3474 3783 3.067106 CGAACGGCCTATATTGCAGAAT 58.933 45.455 0.00 0.00 0.00 2.40
3475 3784 2.101750 TCGAACGGCCTATATTGCAGAA 59.898 45.455 0.00 0.00 0.00 3.02
3476 3785 1.684450 TCGAACGGCCTATATTGCAGA 59.316 47.619 0.00 0.00 0.00 4.26
3477 3786 2.148916 TCGAACGGCCTATATTGCAG 57.851 50.000 0.00 0.00 0.00 4.41
3478 3787 2.831685 ATCGAACGGCCTATATTGCA 57.168 45.000 0.00 0.00 0.00 4.08
3479 3788 5.796350 ATAAATCGAACGGCCTATATTGC 57.204 39.130 0.00 0.00 0.00 3.56
3480 3789 8.755941 CAGATATAAATCGAACGGCCTATATTG 58.244 37.037 0.00 0.00 37.19 1.90
3481 3790 8.692710 TCAGATATAAATCGAACGGCCTATATT 58.307 33.333 0.00 0.00 37.19 1.28
3482 3791 8.234136 TCAGATATAAATCGAACGGCCTATAT 57.766 34.615 0.00 0.00 37.19 0.86
3483 3792 7.634671 TCAGATATAAATCGAACGGCCTATA 57.365 36.000 0.00 0.00 37.19 1.31
3484 3793 6.525578 TCAGATATAAATCGAACGGCCTAT 57.474 37.500 0.00 0.00 37.19 2.57
3485 3794 5.970317 TCAGATATAAATCGAACGGCCTA 57.030 39.130 0.00 0.00 37.19 3.93
3486 3795 4.866508 TCAGATATAAATCGAACGGCCT 57.133 40.909 0.00 0.00 37.19 5.19
3487 3796 4.330074 CCATCAGATATAAATCGAACGGCC 59.670 45.833 0.00 0.00 37.19 6.13
3488 3797 5.168569 TCCATCAGATATAAATCGAACGGC 58.831 41.667 0.00 0.00 37.19 5.68
3489 3798 7.649705 CCTATCCATCAGATATAAATCGAACGG 59.350 40.741 0.00 0.00 36.84 4.44
3490 3799 8.406297 TCCTATCCATCAGATATAAATCGAACG 58.594 37.037 0.00 0.00 36.84 3.95
3502 3811 8.381636 CCATAGTTTCTTTCCTATCCATCAGAT 58.618 37.037 0.00 0.00 39.15 2.90
3503 3812 7.690301 GCCATAGTTTCTTTCCTATCCATCAGA 60.690 40.741 0.00 0.00 0.00 3.27
3504 3813 6.429385 GCCATAGTTTCTTTCCTATCCATCAG 59.571 42.308 0.00 0.00 0.00 2.90
3505 3814 6.126507 TGCCATAGTTTCTTTCCTATCCATCA 60.127 38.462 0.00 0.00 0.00 3.07
3506 3815 6.299141 TGCCATAGTTTCTTTCCTATCCATC 58.701 40.000 0.00 0.00 0.00 3.51
3507 3816 6.266131 TGCCATAGTTTCTTTCCTATCCAT 57.734 37.500 0.00 0.00 0.00 3.41
3508 3817 5.708736 TGCCATAGTTTCTTTCCTATCCA 57.291 39.130 0.00 0.00 0.00 3.41
3509 3818 7.588497 AATTGCCATAGTTTCTTTCCTATCC 57.412 36.000 0.00 0.00 0.00 2.59
3510 3819 9.305925 CAAAATTGCCATAGTTTCTTTCCTATC 57.694 33.333 0.00 0.00 0.00 2.08
3511 3820 9.034800 TCAAAATTGCCATAGTTTCTTTCCTAT 57.965 29.630 0.00 0.00 0.00 2.57
3512 3821 8.415950 TCAAAATTGCCATAGTTTCTTTCCTA 57.584 30.769 0.00 0.00 0.00 2.94
3513 3822 7.301868 TCAAAATTGCCATAGTTTCTTTCCT 57.698 32.000 0.00 0.00 0.00 3.36
3514 3823 7.961325 TTCAAAATTGCCATAGTTTCTTTCC 57.039 32.000 0.00 0.00 0.00 3.13
3540 3849 4.101898 GTGAAAAGGGGTGTGGGTATTTTT 59.898 41.667 0.00 0.00 0.00 1.94
3541 3850 3.644265 GTGAAAAGGGGTGTGGGTATTTT 59.356 43.478 0.00 0.00 0.00 1.82
3542 3851 3.236047 GTGAAAAGGGGTGTGGGTATTT 58.764 45.455 0.00 0.00 0.00 1.40
3543 3852 2.178106 TGTGAAAAGGGGTGTGGGTATT 59.822 45.455 0.00 0.00 0.00 1.89
3544 3853 1.783979 TGTGAAAAGGGGTGTGGGTAT 59.216 47.619 0.00 0.00 0.00 2.73
3545 3854 1.223501 TGTGAAAAGGGGTGTGGGTA 58.776 50.000 0.00 0.00 0.00 3.69
3546 3855 0.560688 ATGTGAAAAGGGGTGTGGGT 59.439 50.000 0.00 0.00 0.00 4.51
3547 3856 1.715785 AATGTGAAAAGGGGTGTGGG 58.284 50.000 0.00 0.00 0.00 4.61
3548 3857 2.433970 ACAAATGTGAAAAGGGGTGTGG 59.566 45.455 0.00 0.00 0.00 4.17
3549 3858 3.817709 ACAAATGTGAAAAGGGGTGTG 57.182 42.857 0.00 0.00 0.00 3.82
3550 3859 5.941555 TTTACAAATGTGAAAAGGGGTGT 57.058 34.783 0.00 0.00 0.00 4.16
3551 3860 7.602265 CCTTATTTACAAATGTGAAAAGGGGTG 59.398 37.037 15.85 0.00 33.54 4.61
3552 3861 7.676004 CCTTATTTACAAATGTGAAAAGGGGT 58.324 34.615 15.85 0.00 33.54 4.95
3553 3862 6.593770 GCCTTATTTACAAATGTGAAAAGGGG 59.406 38.462 20.28 11.94 35.28 4.79
3554 3863 7.386059 AGCCTTATTTACAAATGTGAAAAGGG 58.614 34.615 20.28 13.02 35.28 3.95
3555 3864 8.831715 AAGCCTTATTTACAAATGTGAAAAGG 57.168 30.769 17.57 17.57 36.33 3.11
3557 3866 9.267084 GGAAAGCCTTATTTACAAATGTGAAAA 57.733 29.630 0.00 0.00 0.00 2.29
3558 3867 7.875554 GGGAAAGCCTTATTTACAAATGTGAAA 59.124 33.333 0.00 0.00 0.00 2.69
3559 3868 7.234577 AGGGAAAGCCTTATTTACAAATGTGAA 59.765 33.333 0.00 0.00 0.00 3.18
3560 3869 6.723977 AGGGAAAGCCTTATTTACAAATGTGA 59.276 34.615 0.00 0.00 0.00 3.58
3561 3870 6.935167 AGGGAAAGCCTTATTTACAAATGTG 58.065 36.000 0.00 0.00 0.00 3.21
3562 3871 6.127730 CGAGGGAAAGCCTTATTTACAAATGT 60.128 38.462 0.00 0.00 0.00 2.71
3563 3872 6.127730 ACGAGGGAAAGCCTTATTTACAAATG 60.128 38.462 0.00 0.00 0.00 2.32
3564 3873 5.949952 ACGAGGGAAAGCCTTATTTACAAAT 59.050 36.000 0.00 0.00 0.00 2.32
3565 3874 5.318630 ACGAGGGAAAGCCTTATTTACAAA 58.681 37.500 0.00 0.00 0.00 2.83
3566 3875 4.913784 ACGAGGGAAAGCCTTATTTACAA 58.086 39.130 0.00 0.00 0.00 2.41
3567 3876 4.563140 ACGAGGGAAAGCCTTATTTACA 57.437 40.909 0.00 0.00 0.00 2.41
3568 3877 4.939439 TGAACGAGGGAAAGCCTTATTTAC 59.061 41.667 0.00 0.00 0.00 2.01
3569 3878 5.168647 TGAACGAGGGAAAGCCTTATTTA 57.831 39.130 0.00 0.00 0.00 1.40
3570 3879 4.028993 TGAACGAGGGAAAGCCTTATTT 57.971 40.909 0.00 0.00 0.00 1.40
3571 3880 3.713826 TGAACGAGGGAAAGCCTTATT 57.286 42.857 0.00 0.00 0.00 1.40
3572 3881 3.344515 GTTGAACGAGGGAAAGCCTTAT 58.655 45.455 0.00 0.00 0.00 1.73
3573 3882 2.551504 GGTTGAACGAGGGAAAGCCTTA 60.552 50.000 0.00 0.00 0.00 2.69
3574 3883 1.605753 GTTGAACGAGGGAAAGCCTT 58.394 50.000 0.00 0.00 0.00 4.35
3575 3884 0.250770 GGTTGAACGAGGGAAAGCCT 60.251 55.000 0.00 0.00 0.00 4.58
3576 3885 0.250770 AGGTTGAACGAGGGAAAGCC 60.251 55.000 0.00 0.00 0.00 4.35
3577 3886 1.605753 AAGGTTGAACGAGGGAAAGC 58.394 50.000 0.00 0.00 0.00 3.51
3578 3887 3.883489 AGAAAAGGTTGAACGAGGGAAAG 59.117 43.478 0.00 0.00 0.00 2.62
3579 3888 3.881089 GAGAAAAGGTTGAACGAGGGAAA 59.119 43.478 0.00 0.00 0.00 3.13
3580 3889 3.473625 GAGAAAAGGTTGAACGAGGGAA 58.526 45.455 0.00 0.00 0.00 3.97
3581 3890 2.224450 GGAGAAAAGGTTGAACGAGGGA 60.224 50.000 0.00 0.00 0.00 4.20
3582 3891 2.152016 GGAGAAAAGGTTGAACGAGGG 58.848 52.381 0.00 0.00 0.00 4.30
3583 3892 2.152016 GGGAGAAAAGGTTGAACGAGG 58.848 52.381 0.00 0.00 0.00 4.63
3584 3893 2.846193 TGGGAGAAAAGGTTGAACGAG 58.154 47.619 0.00 0.00 0.00 4.18
3585 3894 3.284793 TTGGGAGAAAAGGTTGAACGA 57.715 42.857 0.00 0.00 0.00 3.85
3586 3895 4.379339 TTTTGGGAGAAAAGGTTGAACG 57.621 40.909 0.00 0.00 0.00 3.95
3612 3921 9.961265 CATCAAGATGCATCTGTATAAATTGTT 57.039 29.630 29.34 13.05 37.19 2.83
3613 3922 9.128404 ACATCAAGATGCATCTGTATAAATTGT 57.872 29.630 29.34 18.96 42.39 2.71
3614 3923 9.961265 AACATCAAGATGCATCTGTATAAATTG 57.039 29.630 29.34 19.87 42.39 2.32
3616 3925 8.790718 GGAACATCAAGATGCATCTGTATAAAT 58.209 33.333 29.34 13.37 42.39 1.40
3617 3926 7.041848 CGGAACATCAAGATGCATCTGTATAAA 60.042 37.037 29.34 11.78 42.39 1.40
3618 3927 6.424812 CGGAACATCAAGATGCATCTGTATAA 59.575 38.462 29.34 13.44 42.39 0.98
3619 3928 5.928264 CGGAACATCAAGATGCATCTGTATA 59.072 40.000 29.34 15.14 42.39 1.47
3620 3929 4.753610 CGGAACATCAAGATGCATCTGTAT 59.246 41.667 29.34 21.23 42.39 2.29
3621 3930 4.122046 CGGAACATCAAGATGCATCTGTA 58.878 43.478 29.34 19.98 42.39 2.74
3622 3931 2.941064 CGGAACATCAAGATGCATCTGT 59.059 45.455 29.34 20.04 42.39 3.41
3623 3932 2.941064 ACGGAACATCAAGATGCATCTG 59.059 45.455 29.34 21.44 42.39 2.90
3624 3933 2.941064 CACGGAACATCAAGATGCATCT 59.059 45.455 23.75 23.75 42.39 2.90
3625 3934 2.540361 GCACGGAACATCAAGATGCATC 60.540 50.000 19.37 19.37 42.39 3.91
3626 3935 1.402968 GCACGGAACATCAAGATGCAT 59.597 47.619 9.85 0.00 42.39 3.96
3627 3936 0.804364 GCACGGAACATCAAGATGCA 59.196 50.000 9.85 0.00 42.39 3.96
3628 3937 0.804364 TGCACGGAACATCAAGATGC 59.196 50.000 9.85 0.00 42.39 3.91
3629 3938 2.725759 CGTTGCACGGAACATCAAGATG 60.726 50.000 8.45 8.45 40.19 2.90
3630 3939 1.464608 CGTTGCACGGAACATCAAGAT 59.535 47.619 2.31 0.00 38.08 2.40
3631 3940 0.865111 CGTTGCACGGAACATCAAGA 59.135 50.000 2.31 0.00 38.08 3.02
3632 3941 3.366392 CGTTGCACGGAACATCAAG 57.634 52.632 2.31 0.00 38.08 3.02
3643 3952 1.094785 AAGATGCCCATACGTTGCAC 58.905 50.000 0.00 0.00 37.92 4.57
3644 3953 1.093972 CAAGATGCCCATACGTTGCA 58.906 50.000 0.00 0.00 39.68 4.08
3645 3954 1.378531 TCAAGATGCCCATACGTTGC 58.621 50.000 0.00 0.00 0.00 4.17
3646 3955 4.380531 ACTATCAAGATGCCCATACGTTG 58.619 43.478 0.00 0.00 0.00 4.10
3647 3956 4.689612 ACTATCAAGATGCCCATACGTT 57.310 40.909 0.00 0.00 0.00 3.99
3648 3957 4.689612 AACTATCAAGATGCCCATACGT 57.310 40.909 0.00 0.00 0.00 3.57
3649 3958 7.490962 TTTTAACTATCAAGATGCCCATACG 57.509 36.000 0.00 0.00 0.00 3.06
3789 4107 9.751542 AATTCCATACTCGTTGTATTCTAGAAG 57.248 33.333 11.53 0.00 39.66 2.85
3797 4115 7.748847 GTGAAACAATTCCATACTCGTTGTAT 58.251 34.615 0.00 0.00 38.51 2.29
3881 4199 9.773328 TTAAGTGATTTTGCTGATTCTTAATCG 57.227 29.630 0.00 0.00 40.84 3.34
3927 4246 6.015772 TGGTACACTGGCCTTATTTTTCTTTC 60.016 38.462 3.32 0.00 0.00 2.62
3928 4247 5.836358 TGGTACACTGGCCTTATTTTTCTTT 59.164 36.000 3.32 0.00 0.00 2.52
3929 4248 5.390387 TGGTACACTGGCCTTATTTTTCTT 58.610 37.500 3.32 0.00 0.00 2.52
3930 4249 4.993028 TGGTACACTGGCCTTATTTTTCT 58.007 39.130 3.32 0.00 0.00 2.52
3990 4309 2.360801 ACAAATACAAGCGCACCAGTTT 59.639 40.909 11.47 1.94 0.00 2.66
3991 4310 1.953686 ACAAATACAAGCGCACCAGTT 59.046 42.857 11.47 0.00 0.00 3.16
3992 4311 1.604604 ACAAATACAAGCGCACCAGT 58.395 45.000 11.47 4.60 0.00 4.00
3993 4312 4.342772 GAATACAAATACAAGCGCACCAG 58.657 43.478 11.47 0.00 0.00 4.00
3994 4313 3.127895 GGAATACAAATACAAGCGCACCA 59.872 43.478 11.47 0.00 0.00 4.17
3995 4314 3.488553 GGGAATACAAATACAAGCGCACC 60.489 47.826 11.47 0.00 0.00 5.01
3996 4315 3.691498 GGGAATACAAATACAAGCGCAC 58.309 45.455 11.47 0.00 0.00 5.34
3997 4316 2.353269 CGGGAATACAAATACAAGCGCA 59.647 45.455 11.47 0.00 0.00 6.09
3998 4317 2.853281 GCGGGAATACAAATACAAGCGC 60.853 50.000 0.00 0.00 0.00 5.92
3999 4318 2.286772 GGCGGGAATACAAATACAAGCG 60.287 50.000 0.00 0.00 0.00 4.68
4000 4319 2.949644 AGGCGGGAATACAAATACAAGC 59.050 45.455 0.00 0.00 0.00 4.01
4001 4320 4.881850 AGAAGGCGGGAATACAAATACAAG 59.118 41.667 0.00 0.00 0.00 3.16
4002 4321 4.850680 AGAAGGCGGGAATACAAATACAA 58.149 39.130 0.00 0.00 0.00 2.41
4003 4322 4.497291 AGAAGGCGGGAATACAAATACA 57.503 40.909 0.00 0.00 0.00 2.29
4004 4323 4.995487 CCTAGAAGGCGGGAATACAAATAC 59.005 45.833 0.00 0.00 0.00 1.89
4005 4324 5.223449 CCTAGAAGGCGGGAATACAAATA 57.777 43.478 0.00 0.00 0.00 1.40
4006 4325 4.086706 CCTAGAAGGCGGGAATACAAAT 57.913 45.455 0.00 0.00 0.00 2.32
4007 4326 3.553828 CCTAGAAGGCGGGAATACAAA 57.446 47.619 0.00 0.00 0.00 2.83
4027 4346 5.064834 GTCTTAATACCACTAGGCAAACAGC 59.935 44.000 0.00 0.00 44.65 4.40
4028 4347 6.170506 TGTCTTAATACCACTAGGCAAACAG 58.829 40.000 0.00 0.00 39.06 3.16
4029 4348 6.014070 TCTGTCTTAATACCACTAGGCAAACA 60.014 38.462 0.00 0.00 39.06 2.83
4030 4349 6.403878 TCTGTCTTAATACCACTAGGCAAAC 58.596 40.000 0.00 0.00 39.06 2.93
4031 4350 6.614694 TCTGTCTTAATACCACTAGGCAAA 57.385 37.500 0.00 0.00 39.06 3.68
4032 4351 6.382859 TGATCTGTCTTAATACCACTAGGCAA 59.617 38.462 0.00 0.00 39.06 4.52
4033 4352 5.897250 TGATCTGTCTTAATACCACTAGGCA 59.103 40.000 0.00 0.00 39.06 4.75
4034 4353 6.041069 AGTGATCTGTCTTAATACCACTAGGC 59.959 42.308 0.00 0.00 39.06 3.93
4035 4354 7.255660 GGAGTGATCTGTCTTAATACCACTAGG 60.256 44.444 0.00 0.00 42.21 3.02
4036 4355 7.255660 GGGAGTGATCTGTCTTAATACCACTAG 60.256 44.444 0.00 0.00 34.25 2.57
4037 4356 6.550108 GGGAGTGATCTGTCTTAATACCACTA 59.450 42.308 0.00 0.00 34.25 2.74
4038 4357 5.364157 GGGAGTGATCTGTCTTAATACCACT 59.636 44.000 0.00 0.00 36.47 4.00
4039 4358 5.128827 TGGGAGTGATCTGTCTTAATACCAC 59.871 44.000 0.00 0.00 0.00 4.16
4040 4359 5.277250 TGGGAGTGATCTGTCTTAATACCA 58.723 41.667 0.00 0.00 0.00 3.25
4041 4360 5.871396 TGGGAGTGATCTGTCTTAATACC 57.129 43.478 0.00 0.00 0.00 2.73
4042 4361 6.049790 GGTTGGGAGTGATCTGTCTTAATAC 58.950 44.000 0.00 0.00 0.00 1.89
4043 4362 5.724370 TGGTTGGGAGTGATCTGTCTTAATA 59.276 40.000 0.00 0.00 0.00 0.98
4044 4363 4.536090 TGGTTGGGAGTGATCTGTCTTAAT 59.464 41.667 0.00 0.00 0.00 1.40
4045 4364 3.907474 TGGTTGGGAGTGATCTGTCTTAA 59.093 43.478 0.00 0.00 0.00 1.85
4046 4365 3.515502 CTGGTTGGGAGTGATCTGTCTTA 59.484 47.826 0.00 0.00 0.00 2.10
4047 4366 2.304180 CTGGTTGGGAGTGATCTGTCTT 59.696 50.000 0.00 0.00 0.00 3.01
4048 4367 1.905215 CTGGTTGGGAGTGATCTGTCT 59.095 52.381 0.00 0.00 0.00 3.41
4049 4368 1.065854 CCTGGTTGGGAGTGATCTGTC 60.066 57.143 0.00 0.00 0.00 3.51
4050 4369 0.987294 CCTGGTTGGGAGTGATCTGT 59.013 55.000 0.00 0.00 0.00 3.41
4051 4370 1.065854 GTCCTGGTTGGGAGTGATCTG 60.066 57.143 0.00 0.00 35.87 2.90
4052 4371 1.280457 GTCCTGGTTGGGAGTGATCT 58.720 55.000 0.00 0.00 35.87 2.75
4053 4372 0.108138 CGTCCTGGTTGGGAGTGATC 60.108 60.000 0.00 0.00 35.87 2.92
4054 4373 0.544357 TCGTCCTGGTTGGGAGTGAT 60.544 55.000 0.00 0.00 35.87 3.06
4055 4374 1.152419 TCGTCCTGGTTGGGAGTGA 60.152 57.895 0.00 0.00 35.87 3.41
4056 4375 1.293498 CTCGTCCTGGTTGGGAGTG 59.707 63.158 0.00 0.00 35.87 3.51
4057 4376 1.152312 ACTCGTCCTGGTTGGGAGT 60.152 57.895 0.00 0.05 35.87 3.85
4058 4377 1.293498 CACTCGTCCTGGTTGGGAG 59.707 63.158 0.00 0.00 35.87 4.30
4059 4378 2.879233 GCACTCGTCCTGGTTGGGA 61.879 63.158 0.00 0.00 36.20 4.37
4060 4379 2.358737 GCACTCGTCCTGGTTGGG 60.359 66.667 0.00 0.00 36.20 4.12
4061 4380 2.507110 ATCGCACTCGTCCTGGTTGG 62.507 60.000 0.00 0.00 36.96 3.77
4062 4381 0.670546 AATCGCACTCGTCCTGGTTG 60.671 55.000 0.00 0.00 36.96 3.77
4063 4382 0.034896 AAATCGCACTCGTCCTGGTT 59.965 50.000 0.00 0.00 36.96 3.67
4064 4383 0.034896 AAAATCGCACTCGTCCTGGT 59.965 50.000 0.00 0.00 36.96 4.00
4065 4384 1.927174 CTAAAATCGCACTCGTCCTGG 59.073 52.381 0.00 0.00 36.96 4.45
4066 4385 1.927174 CCTAAAATCGCACTCGTCCTG 59.073 52.381 0.00 0.00 36.96 3.86
4067 4386 1.134788 CCCTAAAATCGCACTCGTCCT 60.135 52.381 0.00 0.00 36.96 3.85
4068 4387 1.287425 CCCTAAAATCGCACTCGTCC 58.713 55.000 0.00 0.00 36.96 4.79
4069 4388 1.659098 CACCCTAAAATCGCACTCGTC 59.341 52.381 0.00 0.00 36.96 4.20
4070 4389 1.274167 TCACCCTAAAATCGCACTCGT 59.726 47.619 0.00 0.00 36.96 4.18
4071 4390 2.004583 TCACCCTAAAATCGCACTCG 57.995 50.000 0.00 0.00 0.00 4.18
4072 4391 2.614057 CCATCACCCTAAAATCGCACTC 59.386 50.000 0.00 0.00 0.00 3.51
4073 4392 2.026262 ACCATCACCCTAAAATCGCACT 60.026 45.455 0.00 0.00 0.00 4.40
4074 4393 2.354821 GACCATCACCCTAAAATCGCAC 59.645 50.000 0.00 0.00 0.00 5.34
4075 4394 2.238646 AGACCATCACCCTAAAATCGCA 59.761 45.455 0.00 0.00 0.00 5.10
4076 4395 2.614057 CAGACCATCACCCTAAAATCGC 59.386 50.000 0.00 0.00 0.00 4.58
4077 4396 2.614057 GCAGACCATCACCCTAAAATCG 59.386 50.000 0.00 0.00 0.00 3.34
4078 4397 3.620488 TGCAGACCATCACCCTAAAATC 58.380 45.455 0.00 0.00 0.00 2.17
4079 4398 3.624777 CTGCAGACCATCACCCTAAAAT 58.375 45.455 8.42 0.00 0.00 1.82
4080 4399 2.290896 CCTGCAGACCATCACCCTAAAA 60.291 50.000 17.39 0.00 0.00 1.52
4081 4400 1.281867 CCTGCAGACCATCACCCTAAA 59.718 52.381 17.39 0.00 0.00 1.85
4082 4401 0.911769 CCTGCAGACCATCACCCTAA 59.088 55.000 17.39 0.00 0.00 2.69
4083 4402 0.982852 CCCTGCAGACCATCACCCTA 60.983 60.000 17.39 0.00 0.00 3.53
4084 4403 2.304056 CCCTGCAGACCATCACCCT 61.304 63.158 17.39 0.00 0.00 4.34
4085 4404 2.273449 CCCTGCAGACCATCACCC 59.727 66.667 17.39 0.00 0.00 4.61
4086 4405 2.439156 GCCCTGCAGACCATCACC 60.439 66.667 17.39 0.00 0.00 4.02
4087 4406 2.042831 GTGCCCTGCAGACCATCAC 61.043 63.158 17.39 11.09 40.08 3.06
4088 4407 2.352422 GTGCCCTGCAGACCATCA 59.648 61.111 17.39 2.25 40.08 3.07
4089 4408 2.821366 CGTGCCCTGCAGACCATC 60.821 66.667 17.39 5.83 40.08 3.51
4090 4409 3.640407 ACGTGCCCTGCAGACCAT 61.640 61.111 17.39 0.00 40.08 3.55
4091 4410 4.624364 CACGTGCCCTGCAGACCA 62.624 66.667 17.39 8.82 40.08 4.02
4097 4416 3.829272 CTTTGTGCACGTGCCCTGC 62.829 63.158 35.72 22.74 41.18 4.85
4098 4417 2.186160 TCTTTGTGCACGTGCCCTG 61.186 57.895 35.72 20.81 41.18 4.45
4099 4418 2.186826 GTCTTTGTGCACGTGCCCT 61.187 57.895 35.72 0.00 41.18 5.19
4100 4419 1.724582 AAGTCTTTGTGCACGTGCCC 61.725 55.000 35.72 26.78 41.18 5.36
4101 4420 0.100503 AAAGTCTTTGTGCACGTGCC 59.899 50.000 35.72 26.31 41.18 5.01
4102 4421 1.846175 GAAAAGTCTTTGTGCACGTGC 59.154 47.619 33.11 33.11 42.50 5.34
4103 4422 2.101125 CGAAAAGTCTTTGTGCACGTG 58.899 47.619 12.28 12.28 0.00 4.49
4104 4423 1.735571 ACGAAAAGTCTTTGTGCACGT 59.264 42.857 13.13 0.00 0.00 4.49
4105 4424 2.452006 ACGAAAAGTCTTTGTGCACG 57.548 45.000 13.13 0.00 0.00 5.34
4106 4425 3.917985 ACAAACGAAAAGTCTTTGTGCAC 59.082 39.130 10.75 10.75 35.56 4.57
4107 4426 4.162812 GACAAACGAAAAGTCTTTGTGCA 58.837 39.130 0.00 0.00 36.29 4.57
4108 4427 4.162812 TGACAAACGAAAAGTCTTTGTGC 58.837 39.130 0.00 0.00 36.29 4.57
4109 4428 6.482451 GATGACAAACGAAAAGTCTTTGTG 57.518 37.500 0.00 0.00 36.29 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.