Multiple sequence alignment - TraesCS7A01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G235400 chr7A 100.000 2818 0 0 1 2818 207089433 207086616 0.000000e+00 5204.0
1 TraesCS7A01G235400 chr7B 90.593 1754 83 21 500 2202 162340387 162338665 0.000000e+00 2250.0
2 TraesCS7A01G235400 chr7B 88.863 871 51 10 1271 2113 162337985 162337133 0.000000e+00 1029.0
3 TraesCS7A01G235400 chr7B 90.672 268 21 3 2291 2557 162323577 162323313 1.240000e-93 353.0
4 TraesCS7A01G235400 chr7B 91.503 153 11 2 2115 2267 162337061 162336911 2.840000e-50 209.0
5 TraesCS7A01G235400 chr7B 91.453 117 0 1 396 502 162341760 162341644 4.860000e-33 152.0
6 TraesCS7A01G235400 chr7B 96.825 63 2 0 284 346 162341822 162341760 3.840000e-19 106.0
7 TraesCS7A01G235400 chr7D 92.406 1330 56 7 764 2063 198018963 198017649 0.000000e+00 1855.0
8 TraesCS7A01G235400 chr7D 87.736 636 50 9 2057 2674 197998570 197997945 0.000000e+00 717.0
9 TraesCS7A01G235400 chr7D 94.309 123 7 0 646 768 198019115 198018993 3.710000e-44 189.0
10 TraesCS7A01G235400 chr7D 79.899 199 38 2 2366 2563 540568134 540568331 8.140000e-31 145.0
11 TraesCS7A01G235400 chr7D 79.885 174 27 6 2366 2535 294029606 294029775 1.370000e-23 121.0
12 TraesCS7A01G235400 chr7D 94.595 74 4 0 1226 1299 198018425 198018352 6.380000e-22 115.0
13 TraesCS7A01G235400 chr7D 77.723 202 32 11 2366 2563 294038085 294038277 8.250000e-21 111.0
14 TraesCS7A01G235400 chr2B 90.411 146 9 3 643 787 190023032 190022891 1.330000e-43 187.0
15 TraesCS7A01G235400 chr2B 90.435 115 10 1 672 785 342257004 342256890 1.750000e-32 150.0
16 TraesCS7A01G235400 chr2B 80.519 154 17 7 623 776 54270395 54270535 3.840000e-19 106.0
17 TraesCS7A01G235400 chr2A 88.679 159 11 4 630 787 79316005 79316157 1.330000e-43 187.0
18 TraesCS7A01G235400 chr3A 84.146 164 14 8 627 788 487864875 487865028 6.290000e-32 148.0
19 TraesCS7A01G235400 chr3A 100.000 32 0 0 286 317 737659706 737659675 3.030000e-05 60.2
20 TraesCS7A01G235400 chrUn 79.899 199 38 2 2366 2563 471035186 471035383 8.140000e-31 145.0
21 TraesCS7A01G235400 chr1D 79.899 199 38 2 2366 2563 469156291 469156094 8.140000e-31 145.0
22 TraesCS7A01G235400 chr1D 95.833 48 2 0 270 317 396741777 396741824 8.370000e-11 78.7
23 TraesCS7A01G235400 chr1D 90.698 43 4 0 275 317 111093567 111093525 1.090000e-04 58.4
24 TraesCS7A01G235400 chr6B 81.928 166 23 5 623 787 646254519 646254678 1.760000e-27 134.0
25 TraesCS7A01G235400 chr2D 83.969 131 14 4 630 759 633849201 633849077 4.930000e-23 119.0
26 TraesCS7A01G235400 chr2D 100.000 29 0 0 289 317 276934143 276934171 1.000000e-03 54.7
27 TraesCS7A01G235400 chr5D 87.500 96 7 3 226 317 278311255 278311349 3.840000e-19 106.0
28 TraesCS7A01G235400 chr3D 83.333 84 12 2 233 315 341677573 341677655 3.010000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G235400 chr7A 207086616 207089433 2817 True 5204.000000 5204 100.0000 1 2818 1 chr7A.!!$R1 2817
1 TraesCS7A01G235400 chr7B 162336911 162341822 4911 True 749.200000 2250 91.8474 284 2267 5 chr7B.!!$R2 1983
2 TraesCS7A01G235400 chr7D 198017649 198019115 1466 True 719.666667 1855 93.7700 646 2063 3 chr7D.!!$R2 1417
3 TraesCS7A01G235400 chr7D 197997945 197998570 625 True 717.000000 717 87.7360 2057 2674 1 chr7D.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.174845 TCTACGTGGAGATTTGCGGG 59.825 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 3133 0.322456 TTTTGCGGGATCAGTGGAGG 60.322 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.989104 CGTCCCTCCGCATATCTTT 57.011 52.632 0.00 0.00 0.00 2.52
26 27 2.240493 CGTCCCTCCGCATATCTTTT 57.760 50.000 0.00 0.00 0.00 2.27
27 28 2.561569 CGTCCCTCCGCATATCTTTTT 58.438 47.619 0.00 0.00 0.00 1.94
85 86 6.538189 GAGAAGCATCTCCTAAATACTTGC 57.462 41.667 7.75 0.00 45.35 4.01
86 87 5.372373 AGAAGCATCTCCTAAATACTTGCC 58.628 41.667 0.00 0.00 0.00 4.52
87 88 3.733337 AGCATCTCCTAAATACTTGCCG 58.267 45.455 0.00 0.00 0.00 5.69
88 89 2.808543 GCATCTCCTAAATACTTGCCGG 59.191 50.000 0.00 0.00 0.00 6.13
89 90 3.744530 GCATCTCCTAAATACTTGCCGGT 60.745 47.826 1.90 0.00 0.00 5.28
90 91 4.502604 GCATCTCCTAAATACTTGCCGGTA 60.503 45.833 1.90 0.00 0.00 4.02
91 92 5.794894 CATCTCCTAAATACTTGCCGGTAT 58.205 41.667 1.90 0.00 34.29 2.73
92 93 6.573680 GCATCTCCTAAATACTTGCCGGTATA 60.574 42.308 1.90 0.00 32.76 1.47
93 94 6.585695 TCTCCTAAATACTTGCCGGTATAG 57.414 41.667 1.90 1.56 32.76 1.31
94 95 5.479375 TCTCCTAAATACTTGCCGGTATAGG 59.521 44.000 1.90 5.77 32.93 2.57
95 96 5.396485 TCCTAAATACTTGCCGGTATAGGA 58.604 41.667 11.88 11.88 35.90 2.94
96 97 6.021030 TCCTAAATACTTGCCGGTATAGGAT 58.979 40.000 11.88 4.00 34.54 3.24
97 98 6.154021 TCCTAAATACTTGCCGGTATAGGATC 59.846 42.308 11.88 0.00 34.54 3.36
98 99 6.154706 CCTAAATACTTGCCGGTATAGGATCT 59.845 42.308 8.50 0.00 33.20 2.75
99 100 5.407407 AATACTTGCCGGTATAGGATCTG 57.593 43.478 1.90 0.00 32.76 2.90
100 101 1.344763 ACTTGCCGGTATAGGATCTGC 59.655 52.381 1.90 0.00 0.00 4.26
101 102 0.317160 TTGCCGGTATAGGATCTGCG 59.683 55.000 1.90 0.00 0.00 5.18
102 103 0.538746 TGCCGGTATAGGATCTGCGA 60.539 55.000 1.90 0.00 0.00 5.10
103 104 0.601558 GCCGGTATAGGATCTGCGAA 59.398 55.000 1.90 0.00 0.00 4.70
104 105 1.000506 GCCGGTATAGGATCTGCGAAA 59.999 52.381 1.90 0.00 0.00 3.46
105 106 2.353803 GCCGGTATAGGATCTGCGAAAT 60.354 50.000 1.90 0.00 0.00 2.17
106 107 3.512680 CCGGTATAGGATCTGCGAAATC 58.487 50.000 0.00 0.00 0.00 2.17
107 108 3.172050 CGGTATAGGATCTGCGAAATCG 58.828 50.000 0.00 0.00 43.27 3.34
108 109 3.119955 CGGTATAGGATCTGCGAAATCGA 60.120 47.826 7.06 0.00 43.02 3.59
109 110 4.438880 CGGTATAGGATCTGCGAAATCGAT 60.439 45.833 7.06 0.00 43.02 3.59
110 111 5.038033 GGTATAGGATCTGCGAAATCGATC 58.962 45.833 7.06 1.00 43.02 3.69
112 113 2.447244 GGATCTGCGAAATCGATCCT 57.553 50.000 7.06 0.00 46.16 3.24
113 114 2.760374 GGATCTGCGAAATCGATCCTT 58.240 47.619 7.06 0.00 46.16 3.36
114 115 3.134458 GGATCTGCGAAATCGATCCTTT 58.866 45.455 7.06 0.00 46.16 3.11
115 116 3.561725 GGATCTGCGAAATCGATCCTTTT 59.438 43.478 7.06 0.00 46.16 2.27
116 117 4.035675 GGATCTGCGAAATCGATCCTTTTT 59.964 41.667 7.06 0.00 46.16 1.94
117 118 4.340894 TCTGCGAAATCGATCCTTTTTG 57.659 40.909 7.06 0.00 43.02 2.44
118 119 2.848302 CTGCGAAATCGATCCTTTTTGC 59.152 45.455 12.53 12.53 43.02 3.68
119 120 1.840141 GCGAAATCGATCCTTTTTGCG 59.160 47.619 7.06 0.00 43.02 4.85
120 121 2.727916 GCGAAATCGATCCTTTTTGCGT 60.728 45.455 7.06 0.00 43.02 5.24
121 122 3.488489 CGAAATCGATCCTTTTTGCGTT 58.512 40.909 0.00 0.00 43.02 4.84
122 123 3.911964 CGAAATCGATCCTTTTTGCGTTT 59.088 39.130 0.00 0.00 43.02 3.60
123 124 5.083389 CGAAATCGATCCTTTTTGCGTTTA 58.917 37.500 0.00 0.00 43.02 2.01
124 125 5.225129 CGAAATCGATCCTTTTTGCGTTTAG 59.775 40.000 0.00 0.00 43.02 1.85
125 126 4.616181 ATCGATCCTTTTTGCGTTTAGG 57.384 40.909 0.00 0.00 0.00 2.69
126 127 2.160813 TCGATCCTTTTTGCGTTTAGGC 59.839 45.455 0.00 0.00 0.00 3.93
127 128 2.161609 CGATCCTTTTTGCGTTTAGGCT 59.838 45.455 0.00 0.00 0.00 4.58
128 129 3.501950 GATCCTTTTTGCGTTTAGGCTG 58.498 45.455 0.00 0.00 0.00 4.85
129 130 1.000717 TCCTTTTTGCGTTTAGGCTGC 60.001 47.619 0.00 0.00 0.00 5.25
130 131 1.418373 CTTTTTGCGTTTAGGCTGCC 58.582 50.000 11.65 11.65 0.00 4.85
131 132 0.318275 TTTTTGCGTTTAGGCTGCCG 60.318 50.000 13.96 1.58 0.00 5.69
132 133 2.136196 TTTTGCGTTTAGGCTGCCGG 62.136 55.000 13.96 0.00 0.00 6.13
142 143 2.646143 GCTGCCGGCCGTTAAAAA 59.354 55.556 26.77 0.19 34.27 1.94
171 172 8.596781 ATGGTAGAAGTAGAGTTTGTGATAGT 57.403 34.615 0.00 0.00 0.00 2.12
172 173 8.053026 TGGTAGAAGTAGAGTTTGTGATAGTC 57.947 38.462 0.00 0.00 0.00 2.59
173 174 7.668469 TGGTAGAAGTAGAGTTTGTGATAGTCA 59.332 37.037 0.00 0.00 0.00 3.41
174 175 8.688151 GGTAGAAGTAGAGTTTGTGATAGTCAT 58.312 37.037 0.00 0.00 0.00 3.06
177 178 9.469097 AGAAGTAGAGTTTGTGATAGTCATAGT 57.531 33.333 0.00 0.00 0.00 2.12
180 181 9.908747 AGTAGAGTTTGTGATAGTCATAGTAGT 57.091 33.333 0.00 0.00 0.00 2.73
183 184 9.908747 AGAGTTTGTGATAGTCATAGTAGTACT 57.091 33.333 8.14 8.14 0.00 2.73
189 190 9.682465 TGTGATAGTCATAGTAGTACTTTCAGT 57.318 33.333 8.40 0.00 33.70 3.41
194 195 8.418597 AGTCATAGTAGTACTTTCAGTTTGGA 57.581 34.615 8.40 0.00 0.00 3.53
195 196 9.036980 AGTCATAGTAGTACTTTCAGTTTGGAT 57.963 33.333 8.40 0.00 0.00 3.41
196 197 9.088512 GTCATAGTAGTACTTTCAGTTTGGATG 57.911 37.037 8.40 2.40 0.00 3.51
197 198 8.812972 TCATAGTAGTACTTTCAGTTTGGATGT 58.187 33.333 8.40 0.00 0.00 3.06
198 199 8.873830 CATAGTAGTACTTTCAGTTTGGATGTG 58.126 37.037 8.40 0.00 0.00 3.21
199 200 6.827727 AGTAGTACTTTCAGTTTGGATGTGT 58.172 36.000 0.00 0.00 0.00 3.72
200 201 6.929606 AGTAGTACTTTCAGTTTGGATGTGTC 59.070 38.462 0.00 0.00 0.00 3.67
201 202 4.750098 AGTACTTTCAGTTTGGATGTGTCG 59.250 41.667 0.00 0.00 0.00 4.35
202 203 2.290641 ACTTTCAGTTTGGATGTGTCGC 59.709 45.455 0.00 0.00 0.00 5.19
203 204 2.254546 TTCAGTTTGGATGTGTCGCT 57.745 45.000 0.00 0.00 0.00 4.93
204 205 1.795768 TCAGTTTGGATGTGTCGCTC 58.204 50.000 0.00 0.00 0.00 5.03
205 206 1.344438 TCAGTTTGGATGTGTCGCTCT 59.656 47.619 0.00 0.00 0.00 4.09
206 207 1.728971 CAGTTTGGATGTGTCGCTCTC 59.271 52.381 0.00 0.00 0.00 3.20
207 208 1.344438 AGTTTGGATGTGTCGCTCTCA 59.656 47.619 0.00 0.00 0.00 3.27
208 209 2.027745 AGTTTGGATGTGTCGCTCTCAT 60.028 45.455 0.00 0.00 33.67 2.90
209 210 2.299993 TTGGATGTGTCGCTCTCATC 57.700 50.000 11.30 11.30 42.71 2.92
210 211 1.478631 TGGATGTGTCGCTCTCATCT 58.521 50.000 15.97 0.00 42.89 2.90
211 212 2.654863 TGGATGTGTCGCTCTCATCTA 58.345 47.619 15.97 10.89 42.89 1.98
212 213 2.359214 TGGATGTGTCGCTCTCATCTAC 59.641 50.000 15.97 6.91 42.89 2.59
213 214 2.621055 GGATGTGTCGCTCTCATCTACT 59.379 50.000 15.97 0.00 42.89 2.57
214 215 3.304391 GGATGTGTCGCTCTCATCTACTC 60.304 52.174 15.97 3.52 42.89 2.59
215 216 2.992593 TGTGTCGCTCTCATCTACTCT 58.007 47.619 0.00 0.00 0.00 3.24
216 217 4.138487 TGTGTCGCTCTCATCTACTCTA 57.862 45.455 0.00 0.00 0.00 2.43
217 218 3.872182 TGTGTCGCTCTCATCTACTCTAC 59.128 47.826 0.00 0.00 0.00 2.59
218 219 3.872182 GTGTCGCTCTCATCTACTCTACA 59.128 47.826 0.00 0.00 0.00 2.74
219 220 4.513692 GTGTCGCTCTCATCTACTCTACAT 59.486 45.833 0.00 0.00 0.00 2.29
220 221 4.513318 TGTCGCTCTCATCTACTCTACATG 59.487 45.833 0.00 0.00 0.00 3.21
221 222 4.752604 GTCGCTCTCATCTACTCTACATGA 59.247 45.833 0.00 0.00 0.00 3.07
223 224 4.994217 CGCTCTCATCTACTCTACATGAGA 59.006 45.833 0.00 9.81 46.68 3.27
231 232 8.994170 TCATCTACTCTACATGAGAAATCTACG 58.006 37.037 0.00 0.00 45.39 3.51
232 233 8.779303 CATCTACTCTACATGAGAAATCTACGT 58.221 37.037 0.00 0.00 45.39 3.57
233 234 8.144155 TCTACTCTACATGAGAAATCTACGTG 57.856 38.462 0.00 0.00 45.39 4.49
234 235 6.137794 ACTCTACATGAGAAATCTACGTGG 57.862 41.667 0.00 0.00 45.39 4.94
235 236 5.886474 ACTCTACATGAGAAATCTACGTGGA 59.114 40.000 3.36 3.36 45.39 4.02
236 237 6.038825 ACTCTACATGAGAAATCTACGTGGAG 59.961 42.308 7.91 13.45 45.39 3.86
237 238 6.120220 TCTACATGAGAAATCTACGTGGAGA 58.880 40.000 7.91 0.00 37.93 3.71
238 239 5.860941 ACATGAGAAATCTACGTGGAGAT 57.139 39.130 7.91 0.95 37.81 2.75
239 240 6.227298 ACATGAGAAATCTACGTGGAGATT 57.773 37.500 7.91 7.73 46.02 2.40
244 245 2.225068 ATCTACGTGGAGATTTGCGG 57.775 50.000 7.91 0.00 31.92 5.69
245 246 0.174845 TCTACGTGGAGATTTGCGGG 59.825 55.000 0.00 0.00 0.00 6.13
246 247 0.810031 CTACGTGGAGATTTGCGGGG 60.810 60.000 0.00 0.00 0.00 5.73
247 248 1.259142 TACGTGGAGATTTGCGGGGA 61.259 55.000 0.00 0.00 0.00 4.81
248 249 1.153168 CGTGGAGATTTGCGGGGAT 60.153 57.895 0.00 0.00 0.00 3.85
249 250 0.748005 CGTGGAGATTTGCGGGGATT 60.748 55.000 0.00 0.00 0.00 3.01
250 251 1.474330 GTGGAGATTTGCGGGGATTT 58.526 50.000 0.00 0.00 0.00 2.17
251 252 1.405463 GTGGAGATTTGCGGGGATTTC 59.595 52.381 0.00 0.00 0.00 2.17
252 253 1.284785 TGGAGATTTGCGGGGATTTCT 59.715 47.619 0.00 0.00 0.00 2.52
253 254 2.291540 TGGAGATTTGCGGGGATTTCTT 60.292 45.455 0.00 0.00 0.00 2.52
254 255 2.760650 GGAGATTTGCGGGGATTTCTTT 59.239 45.455 0.00 0.00 0.00 2.52
255 256 3.181486 GGAGATTTGCGGGGATTTCTTTC 60.181 47.826 0.00 0.00 0.00 2.62
256 257 3.696548 GAGATTTGCGGGGATTTCTTTCT 59.303 43.478 0.00 0.00 0.00 2.52
257 258 4.089361 AGATTTGCGGGGATTTCTTTCTT 58.911 39.130 0.00 0.00 0.00 2.52
258 259 4.528206 AGATTTGCGGGGATTTCTTTCTTT 59.472 37.500 0.00 0.00 0.00 2.52
259 260 5.714806 AGATTTGCGGGGATTTCTTTCTTTA 59.285 36.000 0.00 0.00 0.00 1.85
260 261 5.793030 TTTGCGGGGATTTCTTTCTTTAA 57.207 34.783 0.00 0.00 0.00 1.52
261 262 5.993748 TTGCGGGGATTTCTTTCTTTAAT 57.006 34.783 0.00 0.00 0.00 1.40
262 263 5.993748 TGCGGGGATTTCTTTCTTTAATT 57.006 34.783 0.00 0.00 0.00 1.40
263 264 6.353404 TGCGGGGATTTCTTTCTTTAATTT 57.647 33.333 0.00 0.00 0.00 1.82
264 265 7.469537 TGCGGGGATTTCTTTCTTTAATTTA 57.530 32.000 0.00 0.00 0.00 1.40
265 266 8.073467 TGCGGGGATTTCTTTCTTTAATTTAT 57.927 30.769 0.00 0.00 0.00 1.40
266 267 8.194769 TGCGGGGATTTCTTTCTTTAATTTATC 58.805 33.333 0.00 0.00 0.00 1.75
267 268 8.414003 GCGGGGATTTCTTTCTTTAATTTATCT 58.586 33.333 0.00 0.00 0.00 1.98
268 269 9.736023 CGGGGATTTCTTTCTTTAATTTATCTG 57.264 33.333 0.00 0.00 0.00 2.90
343 344 9.428097 GAGAATTAGCAAATCCATTTCAGTTTT 57.572 29.630 0.00 0.00 0.00 2.43
345 346 8.907222 AATTAGCAAATCCATTTCAGTTTTGT 57.093 26.923 0.00 0.00 31.56 2.83
346 347 7.945033 TTAGCAAATCCATTTCAGTTTTGTC 57.055 32.000 0.00 0.00 31.56 3.18
347 348 5.916318 AGCAAATCCATTTCAGTTTTGTCA 58.084 33.333 0.00 0.00 31.56 3.58
348 349 6.527423 AGCAAATCCATTTCAGTTTTGTCAT 58.473 32.000 0.00 0.00 31.56 3.06
349 350 7.669427 AGCAAATCCATTTCAGTTTTGTCATA 58.331 30.769 0.00 0.00 31.56 2.15
350 351 8.316214 AGCAAATCCATTTCAGTTTTGTCATAT 58.684 29.630 0.00 0.00 31.56 1.78
351 352 9.585099 GCAAATCCATTTCAGTTTTGTCATATA 57.415 29.630 0.00 0.00 31.56 0.86
355 356 8.506168 TCCATTTCAGTTTTGTCATATACTCC 57.494 34.615 0.00 0.00 0.00 3.85
356 357 8.328758 TCCATTTCAGTTTTGTCATATACTCCT 58.671 33.333 0.00 0.00 0.00 3.69
357 358 8.960591 CCATTTCAGTTTTGTCATATACTCCTT 58.039 33.333 0.00 0.00 0.00 3.36
358 359 9.778993 CATTTCAGTTTTGTCATATACTCCTTG 57.221 33.333 0.00 0.00 0.00 3.61
359 360 6.985188 TCAGTTTTGTCATATACTCCTTGC 57.015 37.500 0.00 0.00 0.00 4.01
360 361 6.472016 TCAGTTTTGTCATATACTCCTTGCA 58.528 36.000 0.00 0.00 0.00 4.08
361 362 6.371548 TCAGTTTTGTCATATACTCCTTGCAC 59.628 38.462 0.00 0.00 0.00 4.57
362 363 6.372659 CAGTTTTGTCATATACTCCTTGCACT 59.627 38.462 0.00 0.00 0.00 4.40
363 364 6.372659 AGTTTTGTCATATACTCCTTGCACTG 59.627 38.462 0.00 0.00 0.00 3.66
364 365 5.675684 TTGTCATATACTCCTTGCACTGA 57.324 39.130 0.00 0.00 0.00 3.41
365 366 5.675684 TGTCATATACTCCTTGCACTGAA 57.324 39.130 0.00 0.00 0.00 3.02
366 367 5.419542 TGTCATATACTCCTTGCACTGAAC 58.580 41.667 0.00 0.00 0.00 3.18
367 368 5.046663 TGTCATATACTCCTTGCACTGAACA 60.047 40.000 0.00 0.00 0.00 3.18
368 369 5.292101 GTCATATACTCCTTGCACTGAACAC 59.708 44.000 0.00 0.00 0.00 3.32
369 370 5.187772 TCATATACTCCTTGCACTGAACACT 59.812 40.000 0.00 0.00 0.00 3.55
370 371 2.717639 ACTCCTTGCACTGAACACTT 57.282 45.000 0.00 0.00 0.00 3.16
371 372 3.004752 ACTCCTTGCACTGAACACTTT 57.995 42.857 0.00 0.00 0.00 2.66
372 373 2.945668 ACTCCTTGCACTGAACACTTTC 59.054 45.455 0.00 0.00 0.00 2.62
373 374 1.939934 TCCTTGCACTGAACACTTTCG 59.060 47.619 0.00 0.00 34.04 3.46
374 375 1.597937 CCTTGCACTGAACACTTTCGC 60.598 52.381 0.00 0.00 34.04 4.70
375 376 1.331756 CTTGCACTGAACACTTTCGCT 59.668 47.619 0.00 0.00 34.04 4.93
376 377 1.378531 TGCACTGAACACTTTCGCTT 58.621 45.000 0.00 0.00 34.04 4.68
377 378 1.742831 TGCACTGAACACTTTCGCTTT 59.257 42.857 0.00 0.00 34.04 3.51
378 379 2.111756 GCACTGAACACTTTCGCTTTG 58.888 47.619 0.00 0.00 34.04 2.77
379 380 2.223249 GCACTGAACACTTTCGCTTTGA 60.223 45.455 0.00 0.00 34.04 2.69
380 381 3.730662 GCACTGAACACTTTCGCTTTGAA 60.731 43.478 0.00 0.00 34.04 2.69
381 382 4.601019 CACTGAACACTTTCGCTTTGAAT 58.399 39.130 0.00 0.00 36.22 2.57
382 383 4.438797 CACTGAACACTTTCGCTTTGAATG 59.561 41.667 0.00 0.00 36.22 2.67
383 384 4.335315 ACTGAACACTTTCGCTTTGAATGA 59.665 37.500 0.00 0.00 36.22 2.57
384 385 5.163663 ACTGAACACTTTCGCTTTGAATGAA 60.164 36.000 0.00 0.00 36.22 2.57
385 386 5.645624 TGAACACTTTCGCTTTGAATGAAA 58.354 33.333 0.00 0.00 36.22 2.69
386 387 6.096036 TGAACACTTTCGCTTTGAATGAAAA 58.904 32.000 0.00 0.00 36.22 2.29
387 388 6.253298 TGAACACTTTCGCTTTGAATGAAAAG 59.747 34.615 0.00 0.00 39.66 2.27
394 395 3.672767 CTTTGAATGAAAAGCTGGGCT 57.327 42.857 0.00 0.00 42.56 5.19
528 1798 3.953612 TGGCATTGTGTAATTCTCCATCC 59.046 43.478 0.00 0.00 0.00 3.51
529 1799 3.953612 GGCATTGTGTAATTCTCCATCCA 59.046 43.478 0.00 0.00 0.00 3.41
533 1803 4.233632 TGTGTAATTCTCCATCCATGCA 57.766 40.909 0.00 0.00 0.00 3.96
534 1804 4.598022 TGTGTAATTCTCCATCCATGCAA 58.402 39.130 0.00 0.00 0.00 4.08
537 1807 5.807011 GTGTAATTCTCCATCCATGCAAAAC 59.193 40.000 0.00 0.00 0.00 2.43
549 1820 5.668471 TCCATGCAAAACTTTGATTGTTGA 58.332 33.333 6.37 0.00 40.55 3.18
578 1849 8.352201 CACTCCATAATGAAAAGAAACTTCACA 58.648 33.333 0.00 0.00 35.70 3.58
635 1906 7.299246 TCTTACCATGCTAAATACTACTCCC 57.701 40.000 0.00 0.00 0.00 4.30
636 1907 7.073854 TCTTACCATGCTAAATACTACTCCCT 58.926 38.462 0.00 0.00 0.00 4.20
637 1908 5.810080 ACCATGCTAAATACTACTCCCTC 57.190 43.478 0.00 0.00 0.00 4.30
638 1909 5.468658 ACCATGCTAAATACTACTCCCTCT 58.531 41.667 0.00 0.00 0.00 3.69
639 1910 5.305644 ACCATGCTAAATACTACTCCCTCTG 59.694 44.000 0.00 0.00 0.00 3.35
640 1911 5.305644 CCATGCTAAATACTACTCCCTCTGT 59.694 44.000 0.00 0.00 0.00 3.41
641 1912 6.183361 CCATGCTAAATACTACTCCCTCTGTT 60.183 42.308 0.00 0.00 0.00 3.16
642 1913 6.869206 TGCTAAATACTACTCCCTCTGTTT 57.131 37.500 0.00 0.00 0.00 2.83
643 1914 7.253905 TGCTAAATACTACTCCCTCTGTTTT 57.746 36.000 0.00 0.00 0.00 2.43
644 1915 7.328737 TGCTAAATACTACTCCCTCTGTTTTC 58.671 38.462 0.00 0.00 0.00 2.29
704 1975 5.522456 TCGGATGTATATGGACACGTTTAC 58.478 41.667 0.00 0.00 30.52 2.01
722 1993 5.901884 CGTTTACTGTGTTTGTTCACTCATC 59.098 40.000 0.00 0.00 38.90 2.92
899 2205 2.983192 TCCCCTTGTTGTGATCCTGTTA 59.017 45.455 0.00 0.00 0.00 2.41
968 2283 7.122353 CCCTTCAAGTTCATTTCTTGATCATCT 59.878 37.037 0.00 0.00 46.59 2.90
972 2287 7.277319 TCAAGTTCATTTCTTGATCATCTCTCG 59.723 37.037 0.00 0.00 43.88 4.04
1060 2375 7.049754 TGCAGAGATTATTGAATTGAGCAGTA 58.950 34.615 0.00 0.00 0.00 2.74
1088 2403 5.011533 AGGAGAATGTCGAAGAATATCAGGG 59.988 44.000 0.00 0.00 39.69 4.45
1147 2462 3.893521 ACATTGCATGATGATCAGACCA 58.106 40.909 5.39 0.00 0.00 4.02
1212 2527 2.573462 TGGAAATGCAGAGGAAGCTACT 59.427 45.455 0.00 0.00 0.00 2.57
1236 2551 4.575885 CATCCTCCTCCGTTACTGAAAAA 58.424 43.478 0.00 0.00 0.00 1.94
1245 2560 4.342951 TCCGTTACTGAAAAAGAGTCTGGA 59.657 41.667 0.00 0.00 0.00 3.86
1270 2585 4.211125 TCCAGAGGAAGCTACTGTATCAG 58.789 47.826 0.00 0.00 37.52 2.90
1363 2678 4.746535 TCACAAACTTGTCCTCACACTA 57.253 40.909 0.00 0.00 39.91 2.74
1377 2692 1.522676 CACACTACAACAGCTGTGACG 59.477 52.381 22.49 14.58 39.20 4.35
1389 2704 0.459585 CTGTGACGTTCCCCGGTATG 60.460 60.000 0.00 0.00 42.24 2.39
1515 2830 3.134458 GCAACACCATCATAGAGCTACC 58.866 50.000 0.00 0.00 0.00 3.18
1646 2961 2.012051 GCCGATACACCTTGGACTTGG 61.012 57.143 0.00 0.00 0.00 3.61
1804 3119 0.656785 GTGTTCGGCAAACGGTGTAA 59.343 50.000 0.00 0.00 44.45 2.41
1818 3133 1.854227 GTGTAACCTCGGCAGATAGC 58.146 55.000 0.00 0.00 44.65 2.97
1861 3176 5.944599 ACTAAGGTAGTCGACTGAAGATGAA 59.055 40.000 28.12 1.88 32.47 2.57
1894 3209 2.552315 TCGAAACTGTCTGGATTTTGGC 59.448 45.455 0.00 0.00 0.00 4.52
1971 3314 3.670377 GGGTCGTGTTGCCCTTGC 61.670 66.667 0.00 0.00 41.63 4.01
1975 3318 4.688419 CGTGTTGCCCTTGCTGCG 62.688 66.667 0.00 0.00 38.71 5.18
2013 3356 3.670377 GCGTTGGACCACTTGGGC 61.670 66.667 0.00 0.00 44.61 5.36
2064 3407 3.376540 CTTACTGGACGCAGCTCTTATC 58.623 50.000 0.00 0.00 0.00 1.75
2082 3429 7.254590 GCTCTTATCGTGCAGTGAAGAAAATAT 60.255 37.037 0.00 0.00 32.54 1.28
2086 3433 6.403333 TCGTGCAGTGAAGAAAATATGTAC 57.597 37.500 0.00 0.00 0.00 2.90
2113 3460 5.174761 GCTCTTATCGTGCAGTAAAGAGATG 59.825 44.000 22.63 6.74 43.73 2.90
2121 5170 4.865365 GTGCAGTAAAGAGATGTGTAGGAC 59.135 45.833 0.00 0.00 0.00 3.85
2144 5193 7.116948 GGACATAGATAAATCATGAACGTCAGG 59.883 40.741 0.00 0.00 0.00 3.86
2166 5215 2.286365 TTTGGAGTTTCAGCCCGAAT 57.714 45.000 0.00 0.00 32.32 3.34
2233 5282 2.433145 CGCCATGTGCAGTCGTCT 60.433 61.111 6.92 0.00 41.33 4.18
2263 5312 2.736347 GCACCTCTCTCCCTTGTACTA 58.264 52.381 0.00 0.00 0.00 1.82
2276 5325 4.463891 CCCTTGTACTACCTTTCTCCGTTA 59.536 45.833 0.00 0.00 0.00 3.18
2288 5337 1.342082 CTCCGTTACCAACTCACGCG 61.342 60.000 3.53 3.53 32.43 6.01
2356 5419 0.108963 TTTGTGTCGTACCAAGGGGG 59.891 55.000 0.00 0.00 44.81 5.40
2380 5443 3.531207 TCGGAGAGGAGGCATGCG 61.531 66.667 12.44 0.00 0.00 4.73
2429 5492 2.233355 GTGCAACGACATTGTCATTCG 58.767 47.619 16.61 5.90 40.77 3.34
2437 5500 3.060940 CGACATTGTCATTCGAATCCTCG 60.061 47.826 16.61 3.93 38.22 4.63
2438 5501 3.198068 ACATTGTCATTCGAATCCTCGG 58.802 45.455 7.92 0.00 45.49 4.63
2462 5525 1.516423 GTGGGCGGAGGAAGTACTC 59.484 63.158 0.00 0.00 36.76 2.59
2464 5527 1.751927 GGGCGGAGGAAGTACTCGA 60.752 63.158 0.00 0.00 38.39 4.04
2466 5529 1.310933 GGCGGAGGAAGTACTCGACA 61.311 60.000 0.00 0.00 38.39 4.35
2468 5531 1.731750 GCGGAGGAAGTACTCGACAAC 60.732 57.143 0.00 0.00 38.39 3.32
2519 5582 2.045829 AGAGAGAGCCTCACGCGA 60.046 61.111 15.93 0.00 44.40 5.87
2535 5598 2.203294 GAGTGGTGGTTGCCGGTT 60.203 61.111 1.90 0.00 0.00 4.44
2549 5612 3.384348 GGTTGTCAGGCCGAGGTA 58.616 61.111 0.00 0.00 0.00 3.08
2551 5614 0.462047 GGTTGTCAGGCCGAGGTATG 60.462 60.000 0.00 0.00 0.00 2.39
2552 5615 0.462047 GTTGTCAGGCCGAGGTATGG 60.462 60.000 0.00 0.00 0.00 2.74
2588 5651 0.175073 GGTGCCCTACGTCGATTCTT 59.825 55.000 0.00 0.00 0.00 2.52
2594 5657 3.181493 GCCCTACGTCGATTCTTAAGTCA 60.181 47.826 0.00 0.00 0.00 3.41
2602 5665 4.017126 TCGATTCTTAAGTCAGAGGCTCA 58.983 43.478 18.26 0.00 0.00 4.26
2610 5673 2.121538 TCAGAGGCTCATCGTCCCG 61.122 63.158 18.26 0.00 0.00 5.14
2612 5675 3.532155 GAGGCTCATCGTCCCGCT 61.532 66.667 10.25 0.00 0.00 5.52
2616 5679 4.899239 CTCATCGTCCCGCTGGCC 62.899 72.222 0.00 0.00 0.00 5.36
2664 5727 0.609131 CCTCCCCACGTTTGAAGCAT 60.609 55.000 0.00 0.00 0.00 3.79
2679 5742 4.873129 CATGAGCGGGGGACGTCG 62.873 72.222 9.92 0.00 46.52 5.12
2689 5752 2.827642 GGACGTCGGACCGGAGAT 60.828 66.667 15.25 0.00 0.00 2.75
2690 5753 2.413142 GGACGTCGGACCGGAGATT 61.413 63.158 15.25 0.00 0.00 2.40
2691 5754 1.063811 GACGTCGGACCGGAGATTC 59.936 63.158 15.25 0.00 0.00 2.52
2692 5755 1.651240 GACGTCGGACCGGAGATTCA 61.651 60.000 15.25 0.00 0.00 2.57
2693 5756 1.064296 CGTCGGACCGGAGATTCAG 59.936 63.158 15.25 0.00 0.00 3.02
2694 5757 1.437986 GTCGGACCGGAGATTCAGG 59.562 63.158 15.25 0.00 37.75 3.86
2695 5758 2.107141 CGGACCGGAGATTCAGGC 59.893 66.667 9.46 0.00 34.97 4.85
2696 5759 2.721167 CGGACCGGAGATTCAGGCA 61.721 63.158 9.46 0.00 34.97 4.75
2697 5760 1.153349 GGACCGGAGATTCAGGCAC 60.153 63.158 9.46 0.00 34.97 5.01
2698 5761 1.519455 GACCGGAGATTCAGGCACG 60.519 63.158 9.46 0.00 34.97 5.34
2699 5762 2.202932 CCGGAGATTCAGGCACGG 60.203 66.667 0.00 0.00 35.01 4.94
2700 5763 2.202932 CGGAGATTCAGGCACGGG 60.203 66.667 0.00 0.00 0.00 5.28
2701 5764 2.514824 GGAGATTCAGGCACGGGC 60.515 66.667 0.00 0.00 40.13 6.13
2702 5765 2.586792 GAGATTCAGGCACGGGCT 59.413 61.111 10.74 1.05 40.87 5.19
2711 5774 4.783621 GCACGGGCTGCAGGATCA 62.784 66.667 17.12 0.00 46.29 2.92
2712 5775 2.046023 CACGGGCTGCAGGATCAA 60.046 61.111 17.12 0.00 0.00 2.57
2713 5776 1.675310 CACGGGCTGCAGGATCAAA 60.675 57.895 17.12 0.00 0.00 2.69
2714 5777 1.675641 ACGGGCTGCAGGATCAAAC 60.676 57.895 17.12 0.00 0.00 2.93
2715 5778 1.377725 CGGGCTGCAGGATCAAACT 60.378 57.895 17.12 0.00 0.00 2.66
2716 5779 0.962356 CGGGCTGCAGGATCAAACTT 60.962 55.000 17.12 0.00 0.00 2.66
2717 5780 0.813821 GGGCTGCAGGATCAAACTTC 59.186 55.000 17.12 0.00 0.00 3.01
2718 5781 0.449388 GGCTGCAGGATCAAACTTCG 59.551 55.000 17.12 0.00 0.00 3.79
2719 5782 0.449388 GCTGCAGGATCAAACTTCGG 59.551 55.000 17.12 0.00 0.00 4.30
2720 5783 1.813513 CTGCAGGATCAAACTTCGGT 58.186 50.000 5.57 0.00 0.00 4.69
2721 5784 2.154462 CTGCAGGATCAAACTTCGGTT 58.846 47.619 5.57 0.00 40.27 4.44
2731 5794 2.052782 AACTTCGGTTTGCTTCCTGT 57.947 45.000 0.00 0.00 33.96 4.00
2732 5795 1.308998 ACTTCGGTTTGCTTCCTGTG 58.691 50.000 0.00 0.00 0.00 3.66
2733 5796 1.308998 CTTCGGTTTGCTTCCTGTGT 58.691 50.000 0.00 0.00 0.00 3.72
2734 5797 1.002468 CTTCGGTTTGCTTCCTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
2735 5798 0.179234 TCGGTTTGCTTCCTGTGTGA 59.821 50.000 0.00 0.00 0.00 3.58
2736 5799 0.588252 CGGTTTGCTTCCTGTGTGAG 59.412 55.000 0.00 0.00 0.00 3.51
2737 5800 1.810031 CGGTTTGCTTCCTGTGTGAGA 60.810 52.381 0.00 0.00 0.00 3.27
2738 5801 1.876156 GGTTTGCTTCCTGTGTGAGAG 59.124 52.381 0.00 0.00 0.00 3.20
2739 5802 1.876156 GTTTGCTTCCTGTGTGAGAGG 59.124 52.381 0.00 0.00 0.00 3.69
2740 5803 1.423584 TTGCTTCCTGTGTGAGAGGA 58.576 50.000 0.00 0.00 37.87 3.71
2741 5804 0.681733 TGCTTCCTGTGTGAGAGGAC 59.318 55.000 0.00 0.00 39.44 3.85
2742 5805 0.681733 GCTTCCTGTGTGAGAGGACA 59.318 55.000 0.00 0.00 39.44 4.02
2743 5806 1.606737 GCTTCCTGTGTGAGAGGACAC 60.607 57.143 0.00 0.00 45.52 3.67
2744 5807 1.967066 CTTCCTGTGTGAGAGGACACT 59.033 52.381 0.00 0.00 45.52 3.55
2745 5808 1.332195 TCCTGTGTGAGAGGACACTG 58.668 55.000 0.00 0.00 45.52 3.66
2746 5809 1.043816 CCTGTGTGAGAGGACACTGT 58.956 55.000 0.00 0.00 45.52 3.55
2747 5810 1.269988 CCTGTGTGAGAGGACACTGTG 60.270 57.143 6.19 6.19 45.52 3.66
2748 5811 0.752658 TGTGTGAGAGGACACTGTGG 59.247 55.000 13.09 0.00 45.52 4.17
2749 5812 1.040646 GTGTGAGAGGACACTGTGGA 58.959 55.000 13.09 0.00 42.58 4.02
2750 5813 1.620819 GTGTGAGAGGACACTGTGGAT 59.379 52.381 13.09 0.00 42.58 3.41
2751 5814 1.895798 TGTGAGAGGACACTGTGGATC 59.104 52.381 13.09 6.87 40.87 3.36
2752 5815 1.895798 GTGAGAGGACACTGTGGATCA 59.104 52.381 13.09 5.78 37.73 2.92
2753 5816 1.895798 TGAGAGGACACTGTGGATCAC 59.104 52.381 13.09 6.26 34.56 3.06
2754 5817 1.895798 GAGAGGACACTGTGGATCACA 59.104 52.381 13.09 0.67 42.45 3.58
2755 5818 2.499289 GAGAGGACACTGTGGATCACAT 59.501 50.000 13.09 0.00 43.71 3.21
2756 5819 3.701542 GAGAGGACACTGTGGATCACATA 59.298 47.826 13.09 0.00 43.71 2.29
2757 5820 4.293494 AGAGGACACTGTGGATCACATAT 58.707 43.478 13.09 0.00 43.71 1.78
2758 5821 4.718774 AGAGGACACTGTGGATCACATATT 59.281 41.667 13.09 0.00 43.71 1.28
2759 5822 5.190528 AGAGGACACTGTGGATCACATATTT 59.809 40.000 13.09 0.00 43.71 1.40
2760 5823 5.819991 AGGACACTGTGGATCACATATTTT 58.180 37.500 13.09 0.00 43.71 1.82
2761 5824 6.248433 AGGACACTGTGGATCACATATTTTT 58.752 36.000 13.09 0.00 43.71 1.94
2762 5825 7.402054 AGGACACTGTGGATCACATATTTTTA 58.598 34.615 13.09 0.00 43.71 1.52
2763 5826 7.336931 AGGACACTGTGGATCACATATTTTTAC 59.663 37.037 13.09 0.00 43.71 2.01
2764 5827 7.120579 GGACACTGTGGATCACATATTTTTACA 59.879 37.037 13.09 0.00 43.71 2.41
2765 5828 8.044060 ACACTGTGGATCACATATTTTTACAG 57.956 34.615 13.09 0.00 43.71 2.74
2766 5829 7.665559 ACACTGTGGATCACATATTTTTACAGT 59.334 33.333 13.09 0.00 43.71 3.55
2767 5830 8.044060 ACTGTGGATCACATATTTTTACAGTG 57.956 34.615 0.00 0.00 43.71 3.66
2768 5831 6.851609 TGTGGATCACATATTTTTACAGTGC 58.148 36.000 0.00 0.00 39.62 4.40
2769 5832 5.965334 GTGGATCACATATTTTTACAGTGCG 59.035 40.000 0.00 0.00 34.08 5.34
2770 5833 5.645929 TGGATCACATATTTTTACAGTGCGT 59.354 36.000 0.00 0.00 0.00 5.24
2771 5834 6.150307 TGGATCACATATTTTTACAGTGCGTT 59.850 34.615 0.00 0.00 0.00 4.84
2772 5835 7.027161 GGATCACATATTTTTACAGTGCGTTT 58.973 34.615 0.00 0.00 0.00 3.60
2773 5836 7.540745 GGATCACATATTTTTACAGTGCGTTTT 59.459 33.333 0.00 0.00 0.00 2.43
2774 5837 7.616103 TCACATATTTTTACAGTGCGTTTTG 57.384 32.000 0.00 0.00 0.00 2.44
2775 5838 6.143118 TCACATATTTTTACAGTGCGTTTTGC 59.857 34.615 0.00 0.00 46.70 3.68
2784 5847 4.804496 GCGTTTTGCACAACAGGT 57.196 50.000 15.56 0.00 45.45 4.00
2785 5848 3.928343 GCGTTTTGCACAACAGGTA 57.072 47.368 15.56 0.00 45.45 3.08
2786 5849 2.415697 GCGTTTTGCACAACAGGTAT 57.584 45.000 15.56 0.00 45.45 2.73
2787 5850 2.050691 GCGTTTTGCACAACAGGTATG 58.949 47.619 15.56 0.00 45.45 2.39
2788 5851 2.660490 CGTTTTGCACAACAGGTATGG 58.340 47.619 15.56 0.00 0.00 2.74
2789 5852 2.034053 CGTTTTGCACAACAGGTATGGT 59.966 45.455 15.56 0.00 0.00 3.55
2790 5853 3.490078 CGTTTTGCACAACAGGTATGGTT 60.490 43.478 15.56 0.00 0.00 3.67
2791 5854 4.438148 GTTTTGCACAACAGGTATGGTTT 58.562 39.130 10.82 0.00 0.00 3.27
2792 5855 4.314740 TTTGCACAACAGGTATGGTTTC 57.685 40.909 0.00 0.00 0.00 2.78
2793 5856 3.222173 TGCACAACAGGTATGGTTTCT 57.778 42.857 0.00 0.00 0.00 2.52
2794 5857 3.146066 TGCACAACAGGTATGGTTTCTC 58.854 45.455 0.00 0.00 0.00 2.87
2795 5858 3.146066 GCACAACAGGTATGGTTTCTCA 58.854 45.455 0.00 0.00 0.00 3.27
2796 5859 3.189287 GCACAACAGGTATGGTTTCTCAG 59.811 47.826 0.00 0.00 0.00 3.35
2797 5860 3.753272 CACAACAGGTATGGTTTCTCAGG 59.247 47.826 0.00 0.00 0.00 3.86
2798 5861 3.394606 ACAACAGGTATGGTTTCTCAGGT 59.605 43.478 0.00 0.00 0.00 4.00
2799 5862 3.703001 ACAGGTATGGTTTCTCAGGTG 57.297 47.619 0.00 0.00 0.00 4.00
2800 5863 2.290323 ACAGGTATGGTTTCTCAGGTGC 60.290 50.000 0.00 0.00 0.00 5.01
2801 5864 1.985159 AGGTATGGTTTCTCAGGTGCA 59.015 47.619 0.00 0.00 0.00 4.57
2802 5865 2.084546 GGTATGGTTTCTCAGGTGCAC 58.915 52.381 8.80 8.80 0.00 4.57
2803 5866 2.552155 GGTATGGTTTCTCAGGTGCACA 60.552 50.000 20.43 0.00 0.00 4.57
2804 5867 2.363306 ATGGTTTCTCAGGTGCACAA 57.637 45.000 20.43 0.02 0.00 3.33
2805 5868 1.679139 TGGTTTCTCAGGTGCACAAG 58.321 50.000 20.43 12.61 0.00 3.16
2806 5869 1.211703 TGGTTTCTCAGGTGCACAAGA 59.788 47.619 20.43 14.78 0.00 3.02
2807 5870 1.604278 GGTTTCTCAGGTGCACAAGAC 59.396 52.381 20.43 7.62 0.00 3.01
2808 5871 2.565841 GTTTCTCAGGTGCACAAGACT 58.434 47.619 20.43 2.99 0.00 3.24
2809 5872 2.945668 GTTTCTCAGGTGCACAAGACTT 59.054 45.455 20.43 0.00 0.00 3.01
2810 5873 2.245159 TCTCAGGTGCACAAGACTTG 57.755 50.000 20.43 13.77 0.00 3.16
2811 5874 1.202687 TCTCAGGTGCACAAGACTTGG 60.203 52.381 20.43 9.30 34.12 3.61
2812 5875 0.819259 TCAGGTGCACAAGACTTGGC 60.819 55.000 20.43 17.93 34.12 4.52
2813 5876 1.102809 CAGGTGCACAAGACTTGGCA 61.103 55.000 20.43 20.62 35.48 4.92
2814 5877 0.178981 AGGTGCACAAGACTTGGCAT 60.179 50.000 24.64 13.40 38.47 4.40
2815 5878 0.675633 GGTGCACAAGACTTGGCATT 59.324 50.000 24.64 3.07 38.47 3.56
2816 5879 1.603678 GGTGCACAAGACTTGGCATTG 60.604 52.381 24.64 14.11 38.47 2.82
2817 5880 1.337703 GTGCACAAGACTTGGCATTGA 59.662 47.619 24.64 7.91 38.47 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.240493 AAAAGATATGCGGAGGGACG 57.760 50.000 0.00 0.00 0.00 4.79
62 63 5.468409 GGCAAGTATTTAGGAGATGCTTCTC 59.532 44.000 18.88 18.88 46.52 2.87
63 64 5.372373 GGCAAGTATTTAGGAGATGCTTCT 58.628 41.667 0.96 0.96 28.77 2.85
64 65 4.212214 CGGCAAGTATTTAGGAGATGCTTC 59.788 45.833 0.00 0.00 28.77 3.86
65 66 4.130118 CGGCAAGTATTTAGGAGATGCTT 58.870 43.478 0.00 0.00 30.94 3.91
66 67 3.495100 CCGGCAAGTATTTAGGAGATGCT 60.495 47.826 0.00 0.00 33.09 3.79
67 68 2.808543 CCGGCAAGTATTTAGGAGATGC 59.191 50.000 0.00 0.00 0.00 3.91
68 69 4.073293 ACCGGCAAGTATTTAGGAGATG 57.927 45.455 0.00 0.00 0.00 2.90
69 70 6.154706 CCTATACCGGCAAGTATTTAGGAGAT 59.845 42.308 0.00 0.00 33.13 2.75
70 71 5.479375 CCTATACCGGCAAGTATTTAGGAGA 59.521 44.000 0.00 0.00 33.13 3.71
71 72 5.479375 TCCTATACCGGCAAGTATTTAGGAG 59.521 44.000 0.00 1.31 34.60 3.69
72 73 5.396485 TCCTATACCGGCAAGTATTTAGGA 58.604 41.667 0.00 10.62 36.07 2.94
73 74 5.733620 TCCTATACCGGCAAGTATTTAGG 57.266 43.478 0.00 0.00 34.74 2.69
74 75 7.036220 CAGATCCTATACCGGCAAGTATTTAG 58.964 42.308 0.00 0.00 34.74 1.85
75 76 6.573680 GCAGATCCTATACCGGCAAGTATTTA 60.574 42.308 0.00 0.00 34.74 1.40
76 77 5.794894 CAGATCCTATACCGGCAAGTATTT 58.205 41.667 0.00 0.00 34.74 1.40
77 78 4.322801 GCAGATCCTATACCGGCAAGTATT 60.323 45.833 0.00 0.00 34.74 1.89
78 79 3.195825 GCAGATCCTATACCGGCAAGTAT 59.804 47.826 0.00 0.00 36.84 2.12
79 80 2.561419 GCAGATCCTATACCGGCAAGTA 59.439 50.000 0.00 0.00 0.00 2.24
80 81 1.344763 GCAGATCCTATACCGGCAAGT 59.655 52.381 0.00 0.00 0.00 3.16
81 82 1.670087 CGCAGATCCTATACCGGCAAG 60.670 57.143 0.00 0.00 0.00 4.01
82 83 0.317160 CGCAGATCCTATACCGGCAA 59.683 55.000 0.00 0.00 0.00 4.52
83 84 0.538746 TCGCAGATCCTATACCGGCA 60.539 55.000 0.00 0.00 0.00 5.69
84 85 0.601558 TTCGCAGATCCTATACCGGC 59.398 55.000 0.00 0.00 35.04 6.13
85 86 3.512680 GATTTCGCAGATCCTATACCGG 58.487 50.000 0.00 0.00 35.04 5.28
86 87 3.119955 TCGATTTCGCAGATCCTATACCG 60.120 47.826 0.00 0.00 39.60 4.02
87 88 4.436242 TCGATTTCGCAGATCCTATACC 57.564 45.455 0.00 0.00 39.60 2.73
94 95 4.802876 AAAAGGATCGATTTCGCAGATC 57.197 40.909 0.00 0.00 39.84 2.75
95 96 4.731773 GCAAAAAGGATCGATTTCGCAGAT 60.732 41.667 0.00 0.00 39.60 2.90
96 97 3.426159 GCAAAAAGGATCGATTTCGCAGA 60.426 43.478 0.00 0.00 39.60 4.26
97 98 2.848302 GCAAAAAGGATCGATTTCGCAG 59.152 45.455 0.00 0.00 39.60 5.18
98 99 2.727607 CGCAAAAAGGATCGATTTCGCA 60.728 45.455 0.00 0.00 39.60 5.10
99 100 1.840141 CGCAAAAAGGATCGATTTCGC 59.160 47.619 0.00 0.00 39.60 4.70
100 101 3.117434 ACGCAAAAAGGATCGATTTCG 57.883 42.857 0.00 0.00 41.45 3.46
101 102 5.511729 CCTAAACGCAAAAAGGATCGATTTC 59.488 40.000 0.00 0.00 0.00 2.17
102 103 5.399013 CCTAAACGCAAAAAGGATCGATTT 58.601 37.500 0.00 0.00 0.00 2.17
103 104 4.674362 GCCTAAACGCAAAAAGGATCGATT 60.674 41.667 0.00 0.00 0.00 3.34
104 105 3.181500 GCCTAAACGCAAAAAGGATCGAT 60.181 43.478 0.00 0.00 0.00 3.59
105 106 2.160813 GCCTAAACGCAAAAAGGATCGA 59.839 45.455 0.00 0.00 0.00 3.59
106 107 2.161609 AGCCTAAACGCAAAAAGGATCG 59.838 45.455 0.00 0.00 0.00 3.69
107 108 3.501950 CAGCCTAAACGCAAAAAGGATC 58.498 45.455 0.00 0.00 0.00 3.36
108 109 2.352715 GCAGCCTAAACGCAAAAAGGAT 60.353 45.455 0.00 0.00 0.00 3.24
109 110 1.000717 GCAGCCTAAACGCAAAAAGGA 60.001 47.619 0.00 0.00 0.00 3.36
110 111 1.418373 GCAGCCTAAACGCAAAAAGG 58.582 50.000 0.00 0.00 0.00 3.11
111 112 1.418373 GGCAGCCTAAACGCAAAAAG 58.582 50.000 3.29 0.00 0.00 2.27
112 113 0.318275 CGGCAGCCTAAACGCAAAAA 60.318 50.000 10.54 0.00 0.00 1.94
113 114 1.284408 CGGCAGCCTAAACGCAAAA 59.716 52.632 10.54 0.00 0.00 2.44
114 115 2.622011 CCGGCAGCCTAAACGCAAA 61.622 57.895 10.54 0.00 0.00 3.68
115 116 3.053291 CCGGCAGCCTAAACGCAA 61.053 61.111 10.54 0.00 0.00 4.85
125 126 2.646143 TTTTTAACGGCCGGCAGC 59.354 55.556 31.76 11.20 42.60 5.25
145 146 9.036980 ACTATCACAAACTCTACTTCTACCATT 57.963 33.333 0.00 0.00 0.00 3.16
146 147 8.596781 ACTATCACAAACTCTACTTCTACCAT 57.403 34.615 0.00 0.00 0.00 3.55
147 148 7.668469 TGACTATCACAAACTCTACTTCTACCA 59.332 37.037 0.00 0.00 0.00 3.25
148 149 8.053026 TGACTATCACAAACTCTACTTCTACC 57.947 38.462 0.00 0.00 0.00 3.18
151 152 9.469097 ACTATGACTATCACAAACTCTACTTCT 57.531 33.333 0.00 0.00 0.00 2.85
154 155 9.908747 ACTACTATGACTATCACAAACTCTACT 57.091 33.333 0.00 0.00 0.00 2.57
157 158 9.908747 AGTACTACTATGACTATCACAAACTCT 57.091 33.333 0.00 0.00 0.00 3.24
182 183 2.549754 AGCGACACATCCAAACTGAAAG 59.450 45.455 0.00 0.00 42.29 2.62
183 184 2.548057 GAGCGACACATCCAAACTGAAA 59.452 45.455 0.00 0.00 0.00 2.69
184 185 2.143122 GAGCGACACATCCAAACTGAA 58.857 47.619 0.00 0.00 0.00 3.02
185 186 1.344438 AGAGCGACACATCCAAACTGA 59.656 47.619 0.00 0.00 0.00 3.41
186 187 1.728971 GAGAGCGACACATCCAAACTG 59.271 52.381 0.00 0.00 0.00 3.16
187 188 1.344438 TGAGAGCGACACATCCAAACT 59.656 47.619 0.00 0.00 0.00 2.66
188 189 1.795768 TGAGAGCGACACATCCAAAC 58.204 50.000 0.00 0.00 0.00 2.93
189 190 2.234661 AGATGAGAGCGACACATCCAAA 59.765 45.455 15.74 0.00 43.94 3.28
190 191 1.827344 AGATGAGAGCGACACATCCAA 59.173 47.619 15.74 0.00 43.94 3.53
191 192 1.478631 AGATGAGAGCGACACATCCA 58.521 50.000 15.74 0.00 43.94 3.41
192 193 2.621055 AGTAGATGAGAGCGACACATCC 59.379 50.000 15.74 6.62 43.94 3.51
193 194 3.563808 AGAGTAGATGAGAGCGACACATC 59.436 47.826 13.10 13.10 43.48 3.06
194 195 3.550820 AGAGTAGATGAGAGCGACACAT 58.449 45.455 0.00 0.00 32.86 3.21
195 196 2.992593 AGAGTAGATGAGAGCGACACA 58.007 47.619 0.00 0.00 0.00 3.72
196 197 3.872182 TGTAGAGTAGATGAGAGCGACAC 59.128 47.826 0.00 0.00 0.00 3.67
197 198 4.138487 TGTAGAGTAGATGAGAGCGACA 57.862 45.455 0.00 0.00 0.00 4.35
198 199 4.752604 TCATGTAGAGTAGATGAGAGCGAC 59.247 45.833 0.00 0.00 34.03 5.19
199 200 4.962155 TCATGTAGAGTAGATGAGAGCGA 58.038 43.478 0.00 0.00 34.03 4.93
205 206 8.994170 CGTAGATTTCTCATGTAGAGTAGATGA 58.006 37.037 0.00 0.00 44.98 2.92
206 207 8.779303 ACGTAGATTTCTCATGTAGAGTAGATG 58.221 37.037 0.00 0.00 44.98 2.90
207 208 8.779303 CACGTAGATTTCTCATGTAGAGTAGAT 58.221 37.037 0.00 0.00 44.98 1.98
208 209 7.226918 CCACGTAGATTTCTCATGTAGAGTAGA 59.773 40.741 0.00 0.00 44.98 2.59
209 210 7.226918 TCCACGTAGATTTCTCATGTAGAGTAG 59.773 40.741 0.00 0.00 44.98 2.57
210 211 7.052248 TCCACGTAGATTTCTCATGTAGAGTA 58.948 38.462 0.00 0.00 44.98 2.59
211 212 5.886474 TCCACGTAGATTTCTCATGTAGAGT 59.114 40.000 0.00 0.00 44.98 3.24
212 213 6.261158 TCTCCACGTAGATTTCTCATGTAGAG 59.739 42.308 0.00 0.00 46.14 2.43
213 214 6.120220 TCTCCACGTAGATTTCTCATGTAGA 58.880 40.000 0.00 0.00 0.00 2.59
214 215 6.378710 TCTCCACGTAGATTTCTCATGTAG 57.621 41.667 0.00 0.00 0.00 2.74
215 216 6.961360 ATCTCCACGTAGATTTCTCATGTA 57.039 37.500 0.00 0.00 32.09 2.29
216 217 5.860941 ATCTCCACGTAGATTTCTCATGT 57.139 39.130 0.00 0.00 32.09 3.21
224 225 2.550978 CCGCAAATCTCCACGTAGATT 58.449 47.619 7.60 7.60 45.91 2.40
225 226 1.202533 CCCGCAAATCTCCACGTAGAT 60.203 52.381 0.00 0.00 37.84 1.98
226 227 0.174845 CCCGCAAATCTCCACGTAGA 59.825 55.000 0.00 0.00 0.00 2.59
227 228 0.810031 CCCCGCAAATCTCCACGTAG 60.810 60.000 0.00 0.00 0.00 3.51
228 229 1.219664 CCCCGCAAATCTCCACGTA 59.780 57.895 0.00 0.00 0.00 3.57
229 230 1.910580 ATCCCCGCAAATCTCCACGT 61.911 55.000 0.00 0.00 0.00 4.49
230 231 0.748005 AATCCCCGCAAATCTCCACG 60.748 55.000 0.00 0.00 0.00 4.94
231 232 1.405463 GAAATCCCCGCAAATCTCCAC 59.595 52.381 0.00 0.00 0.00 4.02
232 233 1.284785 AGAAATCCCCGCAAATCTCCA 59.715 47.619 0.00 0.00 0.00 3.86
233 234 2.058593 AGAAATCCCCGCAAATCTCC 57.941 50.000 0.00 0.00 0.00 3.71
234 235 3.696548 AGAAAGAAATCCCCGCAAATCTC 59.303 43.478 0.00 0.00 0.00 2.75
235 236 3.701664 AGAAAGAAATCCCCGCAAATCT 58.298 40.909 0.00 0.00 0.00 2.40
236 237 4.456280 AAGAAAGAAATCCCCGCAAATC 57.544 40.909 0.00 0.00 0.00 2.17
237 238 4.890158 AAAGAAAGAAATCCCCGCAAAT 57.110 36.364 0.00 0.00 0.00 2.32
238 239 5.793030 TTAAAGAAAGAAATCCCCGCAAA 57.207 34.783 0.00 0.00 0.00 3.68
239 240 5.993748 ATTAAAGAAAGAAATCCCCGCAA 57.006 34.783 0.00 0.00 0.00 4.85
240 241 5.993748 AATTAAAGAAAGAAATCCCCGCA 57.006 34.783 0.00 0.00 0.00 5.69
241 242 8.414003 AGATAAATTAAAGAAAGAAATCCCCGC 58.586 33.333 0.00 0.00 0.00 6.13
242 243 9.736023 CAGATAAATTAAAGAAAGAAATCCCCG 57.264 33.333 0.00 0.00 0.00 5.73
278 279 9.727859 GTCTCATCTAACTCCTACACTATATGA 57.272 37.037 0.00 0.00 0.00 2.15
279 280 9.733556 AGTCTCATCTAACTCCTACACTATATG 57.266 37.037 0.00 0.00 0.00 1.78
282 283 8.908903 CAAAGTCTCATCTAACTCCTACACTAT 58.091 37.037 0.00 0.00 0.00 2.12
296 297 9.956640 ATTCTCAGAATTAACAAAGTCTCATCT 57.043 29.630 0.00 0.00 0.00 2.90
343 344 5.046663 TGTTCAGTGCAAGGAGTATATGACA 60.047 40.000 0.00 0.00 0.00 3.58
345 346 5.187772 AGTGTTCAGTGCAAGGAGTATATGA 59.812 40.000 0.00 0.00 0.00 2.15
346 347 5.423015 AGTGTTCAGTGCAAGGAGTATATG 58.577 41.667 0.00 0.00 0.00 1.78
347 348 5.683876 AGTGTTCAGTGCAAGGAGTATAT 57.316 39.130 0.00 0.00 0.00 0.86
348 349 5.483685 AAGTGTTCAGTGCAAGGAGTATA 57.516 39.130 0.00 0.00 0.00 1.47
349 350 4.357918 AAGTGTTCAGTGCAAGGAGTAT 57.642 40.909 0.00 0.00 0.00 2.12
350 351 3.838244 AAGTGTTCAGTGCAAGGAGTA 57.162 42.857 0.00 0.00 0.00 2.59
351 352 2.717639 AAGTGTTCAGTGCAAGGAGT 57.282 45.000 0.00 0.00 0.00 3.85
352 353 2.032549 CGAAAGTGTTCAGTGCAAGGAG 60.033 50.000 0.00 0.00 32.89 3.69
353 354 1.939934 CGAAAGTGTTCAGTGCAAGGA 59.060 47.619 0.00 0.00 32.89 3.36
354 355 1.597937 GCGAAAGTGTTCAGTGCAAGG 60.598 52.381 0.00 0.00 32.89 3.61
355 356 1.331756 AGCGAAAGTGTTCAGTGCAAG 59.668 47.619 0.00 0.00 32.89 4.01
356 357 1.378531 AGCGAAAGTGTTCAGTGCAA 58.621 45.000 0.00 0.00 32.89 4.08
357 358 1.378531 AAGCGAAAGTGTTCAGTGCA 58.621 45.000 0.00 0.00 32.89 4.57
358 359 2.111756 CAAAGCGAAAGTGTTCAGTGC 58.888 47.619 0.00 0.00 32.89 4.40
359 360 3.673746 TCAAAGCGAAAGTGTTCAGTG 57.326 42.857 0.00 0.00 32.89 3.66
360 361 4.335315 TCATTCAAAGCGAAAGTGTTCAGT 59.665 37.500 0.00 0.00 37.12 3.41
361 362 4.847633 TCATTCAAAGCGAAAGTGTTCAG 58.152 39.130 0.00 0.00 37.12 3.02
362 363 4.891627 TCATTCAAAGCGAAAGTGTTCA 57.108 36.364 0.00 0.00 37.12 3.18
363 364 6.567769 TTTTCATTCAAAGCGAAAGTGTTC 57.432 33.333 0.00 0.00 37.12 3.18
364 365 5.005682 GCTTTTCATTCAAAGCGAAAGTGTT 59.994 36.000 2.59 0.00 46.88 3.32
365 366 4.504097 GCTTTTCATTCAAAGCGAAAGTGT 59.496 37.500 2.59 0.00 46.88 3.55
366 367 4.998295 GCTTTTCATTCAAAGCGAAAGTG 58.002 39.130 2.59 0.00 46.88 3.16
374 375 3.672767 AGCCCAGCTTTTCATTCAAAG 57.327 42.857 0.00 0.00 33.89 2.77
392 393 7.254137 CAAATCTTTAGAGAAAAGGCCTAAGC 58.746 38.462 5.16 0.00 44.10 3.09
393 394 7.121907 AGCAAATCTTTAGAGAAAAGGCCTAAG 59.878 37.037 5.16 3.04 44.10 2.18
394 395 6.948309 AGCAAATCTTTAGAGAAAAGGCCTAA 59.052 34.615 5.16 0.00 44.10 2.69
528 1798 8.005466 GTGTATCAACAATCAAAGTTTTGCATG 58.995 33.333 0.00 4.39 37.36 4.06
529 1799 7.927629 AGTGTATCAACAATCAAAGTTTTGCAT 59.072 29.630 0.00 0.00 37.36 3.96
618 1889 7.439108 AAACAGAGGGAGTAGTATTTAGCAT 57.561 36.000 0.00 0.00 0.00 3.79
704 1975 4.813161 ACTGAGATGAGTGAACAAACACAG 59.187 41.667 0.00 0.00 42.45 3.66
722 1993 6.206829 TCAATATGGACTACATACGGACTGAG 59.793 42.308 0.00 0.00 44.41 3.35
793 2099 3.935203 CTGTTGTATGCTTCCCAGTACAG 59.065 47.826 0.00 0.00 0.00 2.74
800 2106 2.749621 CCACTTCTGTTGTATGCTTCCC 59.250 50.000 0.00 0.00 0.00 3.97
968 2283 1.103803 AAGAGTAAGATGGCGCGAGA 58.896 50.000 12.10 0.00 0.00 4.04
972 2287 1.936547 CCTGAAAGAGTAAGATGGCGC 59.063 52.381 0.00 0.00 34.07 6.53
1060 2375 1.464734 TCTTCGACATTCTCCTCGCT 58.535 50.000 0.00 0.00 0.00 4.93
1088 2403 0.871057 GTTGCTCTGTGTGGAAGCTC 59.129 55.000 0.00 0.00 0.00 4.09
1168 2483 1.035932 TCGGTAGCCTCTTCCCTTCG 61.036 60.000 0.00 0.00 0.00 3.79
1212 2527 0.824109 CAGTAACGGAGGAGGATGCA 59.176 55.000 0.00 0.00 0.00 3.96
1245 2560 5.663106 TGATACAGTAGCTTCCTCTGGATTT 59.337 40.000 0.00 0.00 33.51 2.17
1261 2576 4.461081 GTGAGGACAAGTCTCTGATACAGT 59.539 45.833 0.00 0.00 32.61 3.55
1270 2585 1.964223 TGGAGTGTGAGGACAAGTCTC 59.036 52.381 0.00 0.00 32.49 3.36
1306 2621 7.334090 TCATCTGGATTTCTGGACTCTTTTAG 58.666 38.462 0.00 0.00 0.00 1.85
1307 2622 7.257790 TCATCTGGATTTCTGGACTCTTTTA 57.742 36.000 0.00 0.00 0.00 1.52
1317 2632 5.426504 ACAGTAGCTTCATCTGGATTTCTG 58.573 41.667 0.00 0.00 34.02 3.02
1318 2633 5.690464 ACAGTAGCTTCATCTGGATTTCT 57.310 39.130 0.00 0.00 34.02 2.52
1363 2678 0.814010 GGGAACGTCACAGCTGTTGT 60.814 55.000 18.94 13.42 41.94 3.32
1377 2692 3.268330 GAAGAAGAACATACCGGGGAAC 58.732 50.000 6.32 0.00 0.00 3.62
1389 2704 6.036577 ACTGAGAGAGGAATGAAGAAGAAC 57.963 41.667 0.00 0.00 0.00 3.01
1430 2745 9.935682 CAAGTGTCGATTAACTGCATTATAATT 57.064 29.630 0.00 0.00 0.00 1.40
1431 2746 9.325198 TCAAGTGTCGATTAACTGCATTATAAT 57.675 29.630 0.00 0.00 0.00 1.28
1432 2747 8.710835 TCAAGTGTCGATTAACTGCATTATAA 57.289 30.769 0.00 0.00 0.00 0.98
1433 2748 8.194769 TCTCAAGTGTCGATTAACTGCATTATA 58.805 33.333 0.00 0.00 0.00 0.98
1434 2749 7.041721 TCTCAAGTGTCGATTAACTGCATTAT 58.958 34.615 0.00 0.00 0.00 1.28
1435 2750 6.394809 TCTCAAGTGTCGATTAACTGCATTA 58.605 36.000 0.00 0.00 0.00 1.90
1436 2751 5.237815 TCTCAAGTGTCGATTAACTGCATT 58.762 37.500 0.00 0.00 0.00 3.56
1443 2758 6.855914 GCAATGTTTTCTCAAGTGTCGATTAA 59.144 34.615 0.00 0.00 0.00 1.40
1453 2768 7.697352 TGTATTGTTGCAATGTTTTCTCAAG 57.303 32.000 0.59 0.00 0.00 3.02
1454 2769 9.926158 ATATGTATTGTTGCAATGTTTTCTCAA 57.074 25.926 0.59 0.00 0.00 3.02
1455 2770 9.926158 AATATGTATTGTTGCAATGTTTTCTCA 57.074 25.926 0.59 0.00 0.00 3.27
1515 2830 1.891150 AGGTCCTGCAGCAAGAAAATG 59.109 47.619 8.66 0.00 0.00 2.32
1542 2857 1.178276 GTCAGAGCCTTCGGAGAGAA 58.822 55.000 0.00 0.00 38.43 2.87
1566 2881 2.949106 CTTGGCGACACAGGCTTG 59.051 61.111 0.00 0.00 42.67 4.01
1726 3041 1.740025 GTTCTTCTTCTTCCGGCATGG 59.260 52.381 0.00 0.00 40.09 3.66
1818 3133 0.322456 TTTTGCGGGATCAGTGGAGG 60.322 55.000 0.00 0.00 0.00 4.30
1861 3176 4.156922 AGACAGTTTCGAGACGATCATCTT 59.843 41.667 12.83 0.00 35.23 2.40
1894 3209 1.376037 GGAGAGGCAAACTGGACCG 60.376 63.158 0.00 0.00 0.00 4.79
1971 3314 0.602106 CCCTCATATGGACAGCGCAG 60.602 60.000 11.47 3.33 0.00 5.18
1975 3318 1.963338 GCGCCCTCATATGGACAGC 60.963 63.158 2.13 0.72 0.00 4.40
2013 3356 5.710984 AGTAGTTCCATAACTTCGAGTGTG 58.289 41.667 0.00 0.00 43.60 3.82
2017 3360 6.918569 CCACATAGTAGTTCCATAACTTCGAG 59.081 42.308 0.00 0.00 43.60 4.04
2064 3407 5.163992 ACGTACATATTTTCTTCACTGCACG 60.164 40.000 0.00 0.00 31.55 5.34
2082 3429 1.200484 TGCACGATAAGAGCACGTACA 59.800 47.619 0.00 0.00 41.41 2.90
2086 3433 2.188837 TACTGCACGATAAGAGCACG 57.811 50.000 0.00 0.00 41.41 5.34
2113 3460 8.916654 CGTTCATGATTTATCTATGTCCTACAC 58.083 37.037 0.00 0.00 0.00 2.90
2121 5170 7.953158 ACCTGACGTTCATGATTTATCTATG 57.047 36.000 0.00 0.00 0.00 2.23
2144 5193 1.679153 TCGGGCTGAAACTCCAAAAAC 59.321 47.619 0.00 0.00 0.00 2.43
2239 5288 4.704103 AGGGAGAGAGGTGCGGCA 62.704 66.667 0.00 0.00 0.00 5.69
2263 5312 2.701951 TGAGTTGGTAACGGAGAAAGGT 59.298 45.455 0.00 0.00 42.51 3.50
2304 5366 4.247380 CGCATGGCCTCTCTCCCC 62.247 72.222 3.32 0.00 0.00 4.81
2330 5392 0.881600 GGTACGACACAAACCGCCTT 60.882 55.000 0.00 0.00 0.00 4.35
2333 5395 0.233848 CTTGGTACGACACAAACCGC 59.766 55.000 0.00 0.00 35.98 5.68
2338 5400 1.756024 CCCCCTTGGTACGACACAA 59.244 57.895 0.00 0.00 0.00 3.33
2356 5419 2.801631 CCTCCTCTCCGACATGGCC 61.802 68.421 0.00 0.00 37.80 5.36
2429 5492 2.511600 CACCACCGCCGAGGATTC 60.512 66.667 2.56 0.00 45.00 2.52
2450 5513 1.808945 TCGTTGTCGAGTACTTCCTCC 59.191 52.381 0.00 0.00 41.35 4.30
2492 5555 4.544689 CTCTCTCTGCCGCCGTCG 62.545 72.222 0.00 0.00 0.00 5.12
2502 5565 2.045829 TCGCGTGAGGCTCTCTCT 60.046 61.111 16.72 0.00 42.86 3.10
2519 5582 2.518349 CAACCGGCAACCACCACT 60.518 61.111 0.00 0.00 0.00 4.00
2535 5598 2.063979 CCCATACCTCGGCCTGACA 61.064 63.158 0.00 0.00 0.00 3.58
2588 5651 2.025155 GGACGATGAGCCTCTGACTTA 58.975 52.381 0.00 0.00 0.00 2.24
2624 5687 4.796231 CCTCTTCGACCGGTGGCG 62.796 72.222 14.63 11.37 0.00 5.69
2654 5717 1.508088 CCCCGCTCATGCTTCAAAC 59.492 57.895 0.00 0.00 36.97 2.93
2674 5737 1.654954 CTGAATCTCCGGTCCGACGT 61.655 60.000 14.39 0.00 0.00 4.34
2675 5738 1.064296 CTGAATCTCCGGTCCGACG 59.936 63.158 14.39 2.89 0.00 5.12
2676 5739 1.437986 CCTGAATCTCCGGTCCGAC 59.562 63.158 14.39 0.00 0.00 4.79
2677 5740 2.423898 GCCTGAATCTCCGGTCCGA 61.424 63.158 14.39 0.00 0.00 4.55
2678 5741 2.107141 GCCTGAATCTCCGGTCCG 59.893 66.667 3.60 3.60 0.00 4.79
2679 5742 1.153349 GTGCCTGAATCTCCGGTCC 60.153 63.158 0.00 0.00 0.00 4.46
2680 5743 1.519455 CGTGCCTGAATCTCCGGTC 60.519 63.158 0.00 0.00 0.00 4.79
2681 5744 2.579201 CGTGCCTGAATCTCCGGT 59.421 61.111 0.00 0.00 0.00 5.28
2682 5745 2.202932 CCGTGCCTGAATCTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
2683 5746 2.202932 CCCGTGCCTGAATCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
2684 5747 2.514824 GCCCGTGCCTGAATCTCC 60.515 66.667 0.00 0.00 0.00 3.71
2685 5748 1.817099 CAGCCCGTGCCTGAATCTC 60.817 63.158 0.00 0.00 38.69 2.75
2686 5749 2.270205 CAGCCCGTGCCTGAATCT 59.730 61.111 0.00 0.00 38.69 2.40
2695 5758 1.675310 TTTGATCCTGCAGCCCGTG 60.675 57.895 8.66 0.00 0.00 4.94
2696 5759 1.675641 GTTTGATCCTGCAGCCCGT 60.676 57.895 8.66 0.00 0.00 5.28
2697 5760 0.962356 AAGTTTGATCCTGCAGCCCG 60.962 55.000 8.66 0.00 0.00 6.13
2698 5761 0.813821 GAAGTTTGATCCTGCAGCCC 59.186 55.000 8.66 0.00 0.00 5.19
2699 5762 0.449388 CGAAGTTTGATCCTGCAGCC 59.551 55.000 8.66 0.00 0.00 4.85
2700 5763 0.449388 CCGAAGTTTGATCCTGCAGC 59.551 55.000 8.66 0.00 0.00 5.25
2701 5764 1.813513 ACCGAAGTTTGATCCTGCAG 58.186 50.000 6.78 6.78 0.00 4.41
2702 5765 2.270352 AACCGAAGTTTGATCCTGCA 57.730 45.000 0.00 0.00 29.61 4.41
2712 5775 1.676006 CACAGGAAGCAAACCGAAGTT 59.324 47.619 0.00 0.00 38.03 2.66
2713 5776 1.308998 CACAGGAAGCAAACCGAAGT 58.691 50.000 0.00 0.00 0.00 3.01
2714 5777 1.002468 CACACAGGAAGCAAACCGAAG 60.002 52.381 0.00 0.00 0.00 3.79
2715 5778 1.021202 CACACAGGAAGCAAACCGAA 58.979 50.000 0.00 0.00 0.00 4.30
2716 5779 0.179234 TCACACAGGAAGCAAACCGA 59.821 50.000 0.00 0.00 0.00 4.69
2717 5780 0.588252 CTCACACAGGAAGCAAACCG 59.412 55.000 0.00 0.00 0.00 4.44
2718 5781 1.876156 CTCTCACACAGGAAGCAAACC 59.124 52.381 0.00 0.00 0.00 3.27
2719 5782 1.876156 CCTCTCACACAGGAAGCAAAC 59.124 52.381 0.00 0.00 31.91 2.93
2720 5783 1.768275 TCCTCTCACACAGGAAGCAAA 59.232 47.619 0.00 0.00 37.09 3.68
2721 5784 1.070758 GTCCTCTCACACAGGAAGCAA 59.929 52.381 0.00 0.00 41.94 3.91
2722 5785 0.681733 GTCCTCTCACACAGGAAGCA 59.318 55.000 0.00 0.00 41.94 3.91
2723 5786 0.681733 TGTCCTCTCACACAGGAAGC 59.318 55.000 0.00 0.00 41.94 3.86
2724 5787 2.447244 GTGTCCTCTCACACAGGAAG 57.553 55.000 0.00 0.00 45.25 3.46
2730 5793 1.040646 TCCACAGTGTCCTCTCACAC 58.959 55.000 0.00 0.00 46.13 3.82
2731 5794 1.895798 GATCCACAGTGTCCTCTCACA 59.104 52.381 0.00 0.00 40.37 3.58
2732 5795 1.895798 TGATCCACAGTGTCCTCTCAC 59.104 52.381 0.00 0.00 38.46 3.51
2733 5796 1.895798 GTGATCCACAGTGTCCTCTCA 59.104 52.381 0.00 0.00 34.08 3.27
2734 5797 1.895798 TGTGATCCACAGTGTCCTCTC 59.104 52.381 0.00 0.00 39.62 3.20
2735 5798 2.015456 TGTGATCCACAGTGTCCTCT 57.985 50.000 0.00 0.00 39.62 3.69
2745 5808 5.965334 CGCACTGTAAAAATATGTGATCCAC 59.035 40.000 0.00 0.00 34.56 4.02
2746 5809 5.645929 ACGCACTGTAAAAATATGTGATCCA 59.354 36.000 0.00 0.00 0.00 3.41
2747 5810 6.119144 ACGCACTGTAAAAATATGTGATCC 57.881 37.500 0.00 0.00 0.00 3.36
2748 5811 8.365210 CAAAACGCACTGTAAAAATATGTGATC 58.635 33.333 0.00 0.00 0.00 2.92
2749 5812 7.148820 GCAAAACGCACTGTAAAAATATGTGAT 60.149 33.333 0.00 0.00 41.79 3.06
2750 5813 6.143118 GCAAAACGCACTGTAAAAATATGTGA 59.857 34.615 0.00 0.00 41.79 3.58
2751 5814 6.288419 GCAAAACGCACTGTAAAAATATGTG 58.712 36.000 0.00 0.00 41.79 3.21
2752 5815 6.446659 GCAAAACGCACTGTAAAAATATGT 57.553 33.333 0.00 0.00 41.79 2.29
2767 5830 2.050691 CATACCTGTTGTGCAAAACGC 58.949 47.619 14.95 0.00 42.89 4.84
2768 5831 2.034053 ACCATACCTGTTGTGCAAAACG 59.966 45.455 14.95 9.48 32.47 3.60
2769 5832 3.726291 ACCATACCTGTTGTGCAAAAC 57.274 42.857 13.13 13.13 0.00 2.43
2770 5833 4.404073 AGAAACCATACCTGTTGTGCAAAA 59.596 37.500 0.00 0.00 0.00 2.44
2771 5834 3.957497 AGAAACCATACCTGTTGTGCAAA 59.043 39.130 0.00 0.00 0.00 3.68
2772 5835 3.561143 AGAAACCATACCTGTTGTGCAA 58.439 40.909 0.00 0.00 0.00 4.08
2773 5836 3.146066 GAGAAACCATACCTGTTGTGCA 58.854 45.455 0.00 0.00 0.00 4.57
2774 5837 3.146066 TGAGAAACCATACCTGTTGTGC 58.854 45.455 0.00 0.00 0.00 4.57
2775 5838 3.753272 CCTGAGAAACCATACCTGTTGTG 59.247 47.826 0.00 0.00 0.00 3.33
2776 5839 3.394606 ACCTGAGAAACCATACCTGTTGT 59.605 43.478 0.00 0.00 0.00 3.32
2777 5840 3.753272 CACCTGAGAAACCATACCTGTTG 59.247 47.826 0.00 0.00 0.00 3.33
2778 5841 3.810743 GCACCTGAGAAACCATACCTGTT 60.811 47.826 0.00 0.00 0.00 3.16
2779 5842 2.290323 GCACCTGAGAAACCATACCTGT 60.290 50.000 0.00 0.00 0.00 4.00
2780 5843 2.290260 TGCACCTGAGAAACCATACCTG 60.290 50.000 0.00 0.00 0.00 4.00
2781 5844 1.985159 TGCACCTGAGAAACCATACCT 59.015 47.619 0.00 0.00 0.00 3.08
2782 5845 2.084546 GTGCACCTGAGAAACCATACC 58.915 52.381 5.22 0.00 0.00 2.73
2783 5846 2.778299 TGTGCACCTGAGAAACCATAC 58.222 47.619 15.69 0.00 0.00 2.39
2784 5847 3.072330 TCTTGTGCACCTGAGAAACCATA 59.928 43.478 15.69 0.00 0.00 2.74
2785 5848 2.158623 TCTTGTGCACCTGAGAAACCAT 60.159 45.455 15.69 0.00 0.00 3.55
2786 5849 1.211703 TCTTGTGCACCTGAGAAACCA 59.788 47.619 15.69 0.00 0.00 3.67
2787 5850 1.604278 GTCTTGTGCACCTGAGAAACC 59.396 52.381 15.69 0.51 0.00 3.27
2788 5851 2.565841 AGTCTTGTGCACCTGAGAAAC 58.434 47.619 15.69 5.25 0.00 2.78
2789 5852 2.945008 CAAGTCTTGTGCACCTGAGAAA 59.055 45.455 15.69 0.00 0.00 2.52
2790 5853 2.564771 CAAGTCTTGTGCACCTGAGAA 58.435 47.619 15.69 0.00 0.00 2.87
2791 5854 1.202687 CCAAGTCTTGTGCACCTGAGA 60.203 52.381 15.69 12.14 0.00 3.27
2792 5855 1.233019 CCAAGTCTTGTGCACCTGAG 58.767 55.000 15.69 9.88 0.00 3.35
2793 5856 0.819259 GCCAAGTCTTGTGCACCTGA 60.819 55.000 15.69 9.61 0.00 3.86
2794 5857 1.102809 TGCCAAGTCTTGTGCACCTG 61.103 55.000 15.69 7.13 33.81 4.00
2795 5858 0.178981 ATGCCAAGTCTTGTGCACCT 60.179 50.000 22.86 11.40 38.82 4.00
2796 5859 0.675633 AATGCCAAGTCTTGTGCACC 59.324 50.000 22.86 0.00 38.82 5.01
2797 5860 1.337703 TCAATGCCAAGTCTTGTGCAC 59.662 47.619 22.86 10.75 38.82 4.57
2798 5861 1.689984 TCAATGCCAAGTCTTGTGCA 58.310 45.000 22.72 22.72 39.77 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.