Multiple sequence alignment - TraesCS7A01G234700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G234700 chr7A 100.000 6822 0 0 1 6822 206721152 206714331 0.000000e+00 12598.0
1 TraesCS7A01G234700 chr7D 97.644 3098 52 8 888 3971 197308214 197305124 0.000000e+00 5297.0
2 TraesCS7A01G234700 chr7D 95.639 1009 22 4 3969 4959 197304806 197303802 0.000000e+00 1600.0
3 TraesCS7A01G234700 chr7D 95.275 910 31 4 5917 6822 197302850 197301949 0.000000e+00 1432.0
4 TraesCS7A01G234700 chr7D 86.321 848 96 15 4956 5789 561874239 561873398 0.000000e+00 905.0
5 TraesCS7A01G234700 chr7D 88.803 259 26 3 1 258 197342455 197342199 1.430000e-81 315.0
6 TraesCS7A01G234700 chr7D 91.713 181 13 2 255 434 638594624 638594445 4.090000e-62 250.0
7 TraesCS7A01G234700 chr7D 88.889 126 9 3 5782 5907 197303809 197303689 4.260000e-32 150.0
8 TraesCS7A01G234700 chr1D 89.255 2764 172 61 1163 3856 459895406 459892698 0.000000e+00 3343.0
9 TraesCS7A01G234700 chr1D 86.094 640 47 17 4362 4959 459892546 459891907 0.000000e+00 651.0
10 TraesCS7A01G234700 chr1D 96.667 180 6 0 255 434 309535087 309535266 4.000000e-77 300.0
11 TraesCS7A01G234700 chr1D 96.212 132 2 3 3842 3971 366097512 366097642 5.360000e-51 213.0
12 TraesCS7A01G234700 chr1D 90.345 145 9 5 6430 6571 459891707 459891565 1.170000e-42 185.0
13 TraesCS7A01G234700 chr1D 87.681 138 8 3 6694 6822 459891572 459891435 1.190000e-32 152.0
14 TraesCS7A01G234700 chr1D 86.111 72 10 0 791 862 244621464 244621535 2.040000e-10 78.7
15 TraesCS7A01G234700 chr1D 85.333 75 11 0 788 862 391313161 391313235 2.040000e-10 78.7
16 TraesCS7A01G234700 chr1D 84.932 73 7 4 545 615 64119392 64119462 3.410000e-08 71.3
17 TraesCS7A01G234700 chr1A 88.885 2762 180 66 1164 3856 551610443 551607740 0.000000e+00 3282.0
18 TraesCS7A01G234700 chr1A 84.267 1017 95 36 3969 4959 551607477 551606500 0.000000e+00 931.0
19 TraesCS7A01G234700 chr1A 90.476 63 6 0 803 865 493918871 493918809 4.380000e-12 84.2
20 TraesCS7A01G234700 chr1A 85.000 80 12 0 783 862 272190182 272190103 1.580000e-11 82.4
21 TraesCS7A01G234700 chr7B 98.106 1742 30 3 2231 3971 161656747 161655008 0.000000e+00 3031.0
22 TraesCS7A01G234700 chr7B 95.540 1816 58 12 880 2682 161658550 161656745 0.000000e+00 2883.0
23 TraesCS7A01G234700 chr7B 95.163 1013 23 6 3969 4959 161654688 161653680 0.000000e+00 1576.0
24 TraesCS7A01G234700 chr7B 95.264 908 29 6 5917 6822 161653524 161652629 0.000000e+00 1426.0
25 TraesCS7A01G234700 chr7B 86.572 849 101 8 4952 5790 513970289 513969444 0.000000e+00 924.0
26 TraesCS7A01G234700 chr7B 85.328 259 16 13 1 258 161659137 161658900 1.470000e-61 248.0
27 TraesCS7A01G234700 chr7B 80.357 168 23 9 273 434 588871861 588872024 1.200000e-22 119.0
28 TraesCS7A01G234700 chr7B 92.405 79 6 0 5782 5860 161653687 161653609 5.590000e-21 113.0
29 TraesCS7A01G234700 chr1B 91.443 1566 78 27 2328 3856 632006320 632004774 0.000000e+00 2098.0
30 TraesCS7A01G234700 chr1B 86.059 746 60 15 3984 4709 632004532 632003811 0.000000e+00 761.0
31 TraesCS7A01G234700 chr1B 87.838 444 35 11 1777 2218 632006742 632006316 2.840000e-138 503.0
32 TraesCS7A01G234700 chr1B 88.945 199 15 2 6607 6798 632003164 632002966 8.840000e-59 239.0
33 TraesCS7A01G234700 chr1B 98.400 125 1 1 3847 3971 70318407 70318530 1.150000e-52 219.0
34 TraesCS7A01G234700 chr1B 83.913 230 19 7 4735 4946 632003822 632003593 3.230000e-48 204.0
35 TraesCS7A01G234700 chr1B 93.130 131 9 0 1645 1775 632006969 632006839 6.980000e-45 193.0
36 TraesCS7A01G234700 chr1B 95.455 88 4 0 6467 6554 632003248 632003161 2.570000e-29 141.0
37 TraesCS7A01G234700 chr6B 88.595 833 85 7 4958 5783 153740681 153739852 0.000000e+00 1003.0
38 TraesCS7A01G234700 chr6B 88.462 182 17 3 255 435 588312004 588311826 4.140000e-52 217.0
39 TraesCS7A01G234700 chr6B 97.600 125 2 1 3847 3971 720500155 720500278 5.360000e-51 213.0
40 TraesCS7A01G234700 chr6B 100.000 33 0 0 545 577 257990345 257990313 2.050000e-05 62.1
41 TraesCS7A01G234700 chr4A 88.480 842 82 9 4953 5784 591075233 591074397 0.000000e+00 1003.0
42 TraesCS7A01G234700 chr4A 87.456 845 92 10 4959 5795 360639362 360638524 0.000000e+00 961.0
43 TraesCS7A01G234700 chr4A 86.915 833 92 11 4958 5779 134067352 134068178 0.000000e+00 918.0
44 TraesCS7A01G234700 chr4A 90.789 76 5 2 783 857 173703475 173703549 4.350000e-17 100.0
45 TraesCS7A01G234700 chr4D 88.061 846 86 11 4954 5788 237981773 237982614 0.000000e+00 989.0
46 TraesCS7A01G234700 chr4D 89.157 83 9 0 783 865 441260111 441260029 3.370000e-18 104.0
47 TraesCS7A01G234700 chr5A 86.518 853 98 12 4951 5790 655967731 655968579 0.000000e+00 922.0
48 TraesCS7A01G234700 chr5A 92.818 181 12 1 255 435 469134351 469134530 1.890000e-65 261.0
49 TraesCS7A01G234700 chr5D 86.433 855 97 14 4950 5792 493927340 493926493 0.000000e+00 918.0
50 TraesCS7A01G234700 chr5D 93.220 177 11 1 255 431 370314173 370314348 6.790000e-65 259.0
51 TraesCS7A01G234700 chr5D 82.105 95 17 0 771 865 334263113 334263207 1.580000e-11 82.4
52 TraesCS7A01G234700 chr2A 97.238 181 4 1 255 435 61671413 61671592 8.600000e-79 305.0
53 TraesCS7A01G234700 chr2A 96.667 180 4 2 255 434 187819370 187819547 1.440000e-76 298.0
54 TraesCS7A01G234700 chr3B 94.475 181 10 0 255 435 568938625 568938805 5.210000e-71 279.0
55 TraesCS7A01G234700 chr3B 97.619 126 2 1 3847 3972 239258956 239259080 1.490000e-51 215.0
56 TraesCS7A01G234700 chr5B 91.758 182 13 2 255 434 476076971 476076790 1.140000e-62 252.0
57 TraesCS7A01G234700 chr5B 95.455 132 5 1 3840 3971 180042840 180042710 6.930000e-50 209.0
58 TraesCS7A01G234700 chr5B 83.721 86 7 4 537 621 32021865 32021786 2.640000e-09 75.0
59 TraesCS7A01G234700 chr5B 83.721 86 7 4 537 621 32077047 32076968 2.640000e-09 75.0
60 TraesCS7A01G234700 chr6D 91.667 180 15 0 255 434 16088820 16088641 4.090000e-62 250.0
61 TraesCS7A01G234700 chrUn 97.600 125 2 1 3847 3971 277314211 277314088 5.360000e-51 213.0
62 TraesCS7A01G234700 chrUn 97.600 125 2 1 3847 3971 395339943 395339820 5.360000e-51 213.0
63 TraesCS7A01G234700 chrUn 83.721 86 7 4 537 621 353943853 353943774 2.640000e-09 75.0
64 TraesCS7A01G234700 chrUn 83.784 74 12 0 783 856 63519506 63519579 3.410000e-08 71.3
65 TraesCS7A01G234700 chrUn 83.784 74 12 0 783 856 462938971 462939044 3.410000e-08 71.3
66 TraesCS7A01G234700 chrUn 90.385 52 3 2 545 595 63519174 63519224 4.420000e-07 67.6
67 TraesCS7A01G234700 chrUn 90.385 52 3 2 545 595 462938639 462938689 4.420000e-07 67.6
68 TraesCS7A01G234700 chr2D 83.333 192 22 4 4585 4768 106999396 106999585 1.180000e-37 169.0
69 TraesCS7A01G234700 chr2D 84.314 102 8 6 339 434 54122146 54122047 7.290000e-15 93.5
70 TraesCS7A01G234700 chr2D 85.542 83 12 0 783 865 636923978 636923896 3.390000e-13 87.9
71 TraesCS7A01G234700 chr3D 82.550 149 19 5 290 434 377910898 377910753 2.580000e-24 124.0
72 TraesCS7A01G234700 chr3D 86.747 83 11 0 783 865 514006417 514006335 7.290000e-15 93.5
73 TraesCS7A01G234700 chr3D 81.915 94 15 2 765 858 160621065 160621156 2.040000e-10 78.7
74 TraesCS7A01G234700 chr6A 85.714 98 12 2 765 862 602802782 602802877 1.210000e-17 102.0
75 TraesCS7A01G234700 chr2B 86.747 83 10 1 783 865 776557398 776557317 2.620000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G234700 chr7A 206714331 206721152 6821 True 12598.000000 12598 100.000000 1 6822 1 chr7A.!!$R1 6821
1 TraesCS7A01G234700 chr7D 197301949 197308214 6265 True 2119.750000 5297 94.361750 888 6822 4 chr7D.!!$R4 5934
2 TraesCS7A01G234700 chr7D 561873398 561874239 841 True 905.000000 905 86.321000 4956 5789 1 chr7D.!!$R2 833
3 TraesCS7A01G234700 chr1D 459891435 459895406 3971 True 1082.750000 3343 88.343750 1163 6822 4 chr1D.!!$R1 5659
4 TraesCS7A01G234700 chr1A 551606500 551610443 3943 True 2106.500000 3282 86.576000 1164 4959 2 chr1A.!!$R3 3795
5 TraesCS7A01G234700 chr7B 161652629 161659137 6508 True 1546.166667 3031 93.634333 1 6822 6 chr7B.!!$R2 6821
6 TraesCS7A01G234700 chr7B 513969444 513970289 845 True 924.000000 924 86.572000 4952 5790 1 chr7B.!!$R1 838
7 TraesCS7A01G234700 chr1B 632002966 632006969 4003 True 591.285714 2098 89.540429 1645 6798 7 chr1B.!!$R1 5153
8 TraesCS7A01G234700 chr6B 153739852 153740681 829 True 1003.000000 1003 88.595000 4958 5783 1 chr6B.!!$R1 825
9 TraesCS7A01G234700 chr4A 591074397 591075233 836 True 1003.000000 1003 88.480000 4953 5784 1 chr4A.!!$R2 831
10 TraesCS7A01G234700 chr4A 360638524 360639362 838 True 961.000000 961 87.456000 4959 5795 1 chr4A.!!$R1 836
11 TraesCS7A01G234700 chr4A 134067352 134068178 826 False 918.000000 918 86.915000 4958 5779 1 chr4A.!!$F1 821
12 TraesCS7A01G234700 chr4D 237981773 237982614 841 False 989.000000 989 88.061000 4954 5788 1 chr4D.!!$F1 834
13 TraesCS7A01G234700 chr5A 655967731 655968579 848 False 922.000000 922 86.518000 4951 5790 1 chr5A.!!$F2 839
14 TraesCS7A01G234700 chr5D 493926493 493927340 847 True 918.000000 918 86.433000 4950 5792 1 chr5D.!!$R1 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.037326 TTGTCTCGTGGAGTGGCATC 60.037 55.000 0.0 0.0 0.00 3.91 F
241 242 0.175760 GTGGCATCGGAGAGCAACTA 59.824 55.000 7.4 0.0 43.63 2.24 F
559 561 0.247460 CTGATTCCACGAGAGGCACA 59.753 55.000 0.0 0.0 0.00 4.57 F
561 563 0.247736 GATTCCACGAGAGGCACAGT 59.752 55.000 0.0 0.0 0.00 3.55 F
712 734 0.473755 TGGCACAGCTTCCTGAAAGA 59.526 50.000 0.0 0.0 41.77 2.52 F
734 756 0.673437 AAAACCATGCTTCCGGTGTG 59.327 50.000 0.0 0.0 35.08 3.82 F
2531 3146 0.035317 AGGCATTGTTCGCACTCTCA 59.965 50.000 0.0 0.0 0.00 3.27 F
3096 3713 3.630312 TGTAAAGGTTGGTTTGCTGTCTC 59.370 43.478 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1183 1205 1.962807 CTCATTTGGGTGTTGCTTGGA 59.037 47.619 0.00 0.0 0.00 3.53 R
1294 1317 2.797177 AGGGAGAAACTGAGAATGCC 57.203 50.000 0.00 0.0 0.00 4.40 R
1404 1430 4.500545 CCTTGCACATAGCTACCTCTACTG 60.501 50.000 0.00 0.0 45.94 2.74 R
1902 2068 5.931441 AATGAGATAAATAGCGCCACTTC 57.069 39.130 2.29 0.0 0.00 3.01 R
2247 2413 8.687242 TCCGAAGATATTCTATCCACATATGTC 58.313 37.037 5.07 0.0 0.00 3.06 R
3500 4159 9.793252 AATTTTAAGCAAGTGTATCATGACATC 57.207 29.630 0.00 0.0 0.00 3.06 R
3556 4216 2.104859 CGGATGGCAGCAGTCACAG 61.105 63.158 4.64 0.0 28.11 3.66 R
5849 6933 2.509166 TTCTGGAAGGAGCGAGTAGA 57.491 50.000 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.794687 ACGATTTGAGAAAATATGCACGA 57.205 34.783 0.00 0.00 0.00 4.35
57 58 5.525012 TGAGAAAATATGCACGAATGAGAGG 59.475 40.000 0.00 0.00 0.00 3.69
59 60 2.175878 ATATGCACGAATGAGAGGGC 57.824 50.000 0.00 0.00 0.00 5.19
84 85 3.374220 TTTTCTTAAGCGGACAGACGA 57.626 42.857 0.00 0.00 35.47 4.20
85 86 2.631418 TTCTTAAGCGGACAGACGAG 57.369 50.000 0.00 0.00 35.47 4.18
86 87 1.817357 TCTTAAGCGGACAGACGAGA 58.183 50.000 0.00 0.00 35.47 4.04
87 88 1.738350 TCTTAAGCGGACAGACGAGAG 59.262 52.381 0.00 0.00 35.47 3.20
92 93 1.427419 CGGACAGACGAGAGAGCTG 59.573 63.158 0.00 0.00 40.78 4.24
130 131 4.065789 GGAAGGAGTATTAATGGGCTTCG 58.934 47.826 0.00 0.00 0.00 3.79
179 180 2.094026 GGAGCAAAATTTGGCCCTACAG 60.094 50.000 14.11 0.00 0.00 2.74
202 203 4.049640 GGCCCAATTTCGTGCGCA 62.050 61.111 5.66 5.66 0.00 6.09
208 209 0.109827 CAATTTCGTGCGCATGACCA 60.110 50.000 31.06 20.79 0.00 4.02
229 230 0.037326 TTGTCTCGTGGAGTGGCATC 60.037 55.000 0.00 0.00 0.00 3.91
241 242 0.175760 GTGGCATCGGAGAGCAACTA 59.824 55.000 7.40 0.00 43.63 2.24
243 244 1.291132 GGCATCGGAGAGCAACTAAC 58.709 55.000 7.40 0.00 43.63 2.34
244 245 1.291132 GCATCGGAGAGCAACTAACC 58.709 55.000 0.90 0.00 43.63 2.85
245 246 1.405526 GCATCGGAGAGCAACTAACCA 60.406 52.381 0.90 0.00 43.63 3.67
246 247 2.544685 CATCGGAGAGCAACTAACCAG 58.455 52.381 0.00 0.00 43.63 4.00
247 248 0.895530 TCGGAGAGCAACTAACCAGG 59.104 55.000 0.00 0.00 0.00 4.45
248 249 0.895530 CGGAGAGCAACTAACCAGGA 59.104 55.000 0.00 0.00 0.00 3.86
249 250 1.134965 CGGAGAGCAACTAACCAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
250 251 1.406205 GGAGAGCAACTAACCAGGAGC 60.406 57.143 0.00 0.00 0.00 4.70
251 252 0.247736 AGAGCAACTAACCAGGAGCG 59.752 55.000 0.00 0.00 32.71 5.03
252 253 1.362406 GAGCAACTAACCAGGAGCGC 61.362 60.000 0.00 0.00 32.71 5.92
253 254 1.376037 GCAACTAACCAGGAGCGCT 60.376 57.895 11.27 11.27 0.00 5.92
254 255 0.955919 GCAACTAACCAGGAGCGCTT 60.956 55.000 13.26 0.00 0.00 4.68
255 256 0.798776 CAACTAACCAGGAGCGCTTG 59.201 55.000 13.26 6.77 0.00 4.01
256 257 0.396811 AACTAACCAGGAGCGCTTGT 59.603 50.000 13.26 3.97 0.00 3.16
257 258 0.396811 ACTAACCAGGAGCGCTTGTT 59.603 50.000 13.26 15.23 0.00 2.83
258 259 1.202770 ACTAACCAGGAGCGCTTGTTT 60.203 47.619 13.26 3.93 0.00 2.83
259 260 2.038033 ACTAACCAGGAGCGCTTGTTTA 59.962 45.455 13.26 5.06 0.00 2.01
260 261 1.235724 AACCAGGAGCGCTTGTTTAC 58.764 50.000 13.26 0.00 0.00 2.01
261 262 0.396811 ACCAGGAGCGCTTGTTTACT 59.603 50.000 13.26 0.25 0.00 2.24
262 263 1.202770 ACCAGGAGCGCTTGTTTACTT 60.203 47.619 13.26 0.00 0.00 2.24
263 264 1.197721 CCAGGAGCGCTTGTTTACTTG 59.802 52.381 13.26 3.76 0.00 3.16
264 265 1.873591 CAGGAGCGCTTGTTTACTTGT 59.126 47.619 13.26 0.00 0.00 3.16
265 266 3.064207 CAGGAGCGCTTGTTTACTTGTA 58.936 45.455 13.26 0.00 0.00 2.41
266 267 3.496884 CAGGAGCGCTTGTTTACTTGTAA 59.503 43.478 13.26 0.00 0.00 2.41
267 268 4.154195 CAGGAGCGCTTGTTTACTTGTAAT 59.846 41.667 13.26 0.00 0.00 1.89
268 269 4.760204 AGGAGCGCTTGTTTACTTGTAATT 59.240 37.500 13.26 0.00 0.00 1.40
269 270 5.240844 AGGAGCGCTTGTTTACTTGTAATTT 59.759 36.000 13.26 0.00 0.00 1.82
270 271 5.567915 GGAGCGCTTGTTTACTTGTAATTTC 59.432 40.000 13.26 0.00 0.00 2.17
271 272 5.144359 AGCGCTTGTTTACTTGTAATTTCG 58.856 37.500 2.64 0.00 0.00 3.46
272 273 4.907582 GCGCTTGTTTACTTGTAATTTCGT 59.092 37.500 0.00 0.00 0.00 3.85
273 274 5.397240 GCGCTTGTTTACTTGTAATTTCGTT 59.603 36.000 0.00 0.00 0.00 3.85
274 275 6.075257 GCGCTTGTTTACTTGTAATTTCGTTT 60.075 34.615 0.00 0.00 0.00 3.60
275 276 7.513969 GCGCTTGTTTACTTGTAATTTCGTTTT 60.514 33.333 0.00 0.00 0.00 2.43
276 277 8.315341 CGCTTGTTTACTTGTAATTTCGTTTTT 58.685 29.630 0.00 0.00 0.00 1.94
285 286 9.771915 ACTTGTAATTTCGTTTTTAAAAGTCGA 57.228 25.926 19.03 19.03 32.80 4.20
291 292 6.997575 TTCGTTTTTAAAAGTCGAAACTCG 57.002 33.333 25.68 12.34 42.10 4.18
303 304 3.766151 TCGAAACTCGAATAACGATGCT 58.234 40.909 0.00 0.00 46.90 3.79
304 305 3.789756 TCGAAACTCGAATAACGATGCTC 59.210 43.478 0.00 0.00 46.90 4.26
305 306 4.673320 TCGAAACTCGAATAACGATGCTCA 60.673 41.667 0.00 0.00 46.90 4.26
306 307 5.959346 TCGAAACTCGAATAACGATGCTCAT 60.959 40.000 0.00 0.00 46.90 2.90
307 308 6.731065 TCGAAACTCGAATAACGATGCTCATA 60.731 38.462 0.00 0.00 46.90 2.15
308 309 8.456885 TCGAAACTCGAATAACGATGCTCATAG 61.457 40.741 0.00 0.00 46.90 2.23
322 323 4.220533 GCTCATAGCATAGCCAAGTTTG 57.779 45.455 0.00 0.00 41.89 2.93
323 324 3.629398 GCTCATAGCATAGCCAAGTTTGT 59.371 43.478 0.00 0.00 41.89 2.83
324 325 4.096984 GCTCATAGCATAGCCAAGTTTGTT 59.903 41.667 0.00 0.00 41.89 2.83
325 326 5.731686 GCTCATAGCATAGCCAAGTTTGTTC 60.732 44.000 0.00 0.00 41.89 3.18
326 327 4.332543 TCATAGCATAGCCAAGTTTGTTCG 59.667 41.667 0.00 0.00 0.00 3.95
327 328 2.504367 AGCATAGCCAAGTTTGTTCGT 58.496 42.857 0.00 0.00 0.00 3.85
328 329 2.884639 AGCATAGCCAAGTTTGTTCGTT 59.115 40.909 0.00 0.00 0.00 3.85
329 330 3.058224 AGCATAGCCAAGTTTGTTCGTTC 60.058 43.478 0.00 0.00 0.00 3.95
330 331 3.058224 GCATAGCCAAGTTTGTTCGTTCT 60.058 43.478 0.00 0.00 0.00 3.01
331 332 4.556699 GCATAGCCAAGTTTGTTCGTTCTT 60.557 41.667 0.00 0.00 0.00 2.52
332 333 5.519722 CATAGCCAAGTTTGTTCGTTCTTT 58.480 37.500 0.00 0.00 0.00 2.52
333 334 6.664515 CATAGCCAAGTTTGTTCGTTCTTTA 58.335 36.000 0.00 0.00 0.00 1.85
334 335 5.169836 AGCCAAGTTTGTTCGTTCTTTAG 57.830 39.130 0.00 0.00 0.00 1.85
335 336 4.036380 AGCCAAGTTTGTTCGTTCTTTAGG 59.964 41.667 0.00 0.00 0.00 2.69
336 337 4.201980 GCCAAGTTTGTTCGTTCTTTAGGT 60.202 41.667 0.00 0.00 0.00 3.08
337 338 5.507974 CCAAGTTTGTTCGTTCTTTAGGTC 58.492 41.667 0.00 0.00 0.00 3.85
338 339 5.065474 CCAAGTTTGTTCGTTCTTTAGGTCA 59.935 40.000 0.00 0.00 0.00 4.02
339 340 5.986004 AGTTTGTTCGTTCTTTAGGTCAG 57.014 39.130 0.00 0.00 0.00 3.51
340 341 4.814771 AGTTTGTTCGTTCTTTAGGTCAGG 59.185 41.667 0.00 0.00 0.00 3.86
341 342 3.396260 TGTTCGTTCTTTAGGTCAGGG 57.604 47.619 0.00 0.00 0.00 4.45
342 343 2.038033 TGTTCGTTCTTTAGGTCAGGGG 59.962 50.000 0.00 0.00 0.00 4.79
343 344 0.611714 TCGTTCTTTAGGTCAGGGGC 59.388 55.000 0.00 0.00 0.00 5.80
344 345 0.739813 CGTTCTTTAGGTCAGGGGCG 60.740 60.000 0.00 0.00 0.00 6.13
345 346 1.025113 GTTCTTTAGGTCAGGGGCGC 61.025 60.000 0.00 0.00 0.00 6.53
346 347 2.124695 CTTTAGGTCAGGGGCGCC 60.125 66.667 21.18 21.18 0.00 6.53
347 348 2.931105 TTTAGGTCAGGGGCGCCA 60.931 61.111 30.85 3.84 0.00 5.69
348 349 3.262448 TTTAGGTCAGGGGCGCCAC 62.262 63.158 30.85 28.13 0.00 5.01
371 372 2.283821 GCTTGGCCAACCCCATGA 60.284 61.111 16.05 0.00 34.21 3.07
372 373 1.686800 GCTTGGCCAACCCCATGAT 60.687 57.895 16.05 0.00 34.21 2.45
373 374 1.679559 GCTTGGCCAACCCCATGATC 61.680 60.000 16.05 0.00 34.21 2.92
374 375 1.001503 TTGGCCAACCCCATGATCC 59.998 57.895 16.05 0.00 34.21 3.36
375 376 2.519302 GGCCAACCCCATGATCCG 60.519 66.667 0.00 0.00 0.00 4.18
376 377 2.595095 GCCAACCCCATGATCCGA 59.405 61.111 0.00 0.00 0.00 4.55
377 378 1.526917 GCCAACCCCATGATCCGAG 60.527 63.158 0.00 0.00 0.00 4.63
378 379 1.983119 GCCAACCCCATGATCCGAGA 61.983 60.000 0.00 0.00 0.00 4.04
379 380 0.767375 CCAACCCCATGATCCGAGAT 59.233 55.000 0.00 0.00 0.00 2.75
380 381 1.544093 CCAACCCCATGATCCGAGATG 60.544 57.143 0.00 0.00 0.00 2.90
381 382 1.141657 CAACCCCATGATCCGAGATGT 59.858 52.381 0.00 0.00 0.00 3.06
382 383 2.368548 CAACCCCATGATCCGAGATGTA 59.631 50.000 0.00 0.00 0.00 2.29
383 384 2.907892 ACCCCATGATCCGAGATGTAT 58.092 47.619 0.00 0.00 0.00 2.29
384 385 3.251484 ACCCCATGATCCGAGATGTATT 58.749 45.455 0.00 0.00 0.00 1.89
385 386 3.261897 ACCCCATGATCCGAGATGTATTC 59.738 47.826 0.00 0.00 0.00 1.75
386 387 3.369892 CCCCATGATCCGAGATGTATTCC 60.370 52.174 0.00 0.00 0.00 3.01
387 388 3.261643 CCCATGATCCGAGATGTATTCCA 59.738 47.826 0.00 0.00 0.00 3.53
388 389 4.248859 CCATGATCCGAGATGTATTCCAC 58.751 47.826 0.00 0.00 0.00 4.02
389 390 3.643159 TGATCCGAGATGTATTCCACG 57.357 47.619 0.00 0.00 0.00 4.94
390 391 2.956333 TGATCCGAGATGTATTCCACGT 59.044 45.455 0.00 0.00 0.00 4.49
391 392 3.383505 TGATCCGAGATGTATTCCACGTT 59.616 43.478 0.00 0.00 0.00 3.99
392 393 3.431922 TCCGAGATGTATTCCACGTTC 57.568 47.619 0.00 0.00 0.00 3.95
393 394 3.021695 TCCGAGATGTATTCCACGTTCT 58.978 45.455 0.00 0.00 0.00 3.01
394 395 4.201657 TCCGAGATGTATTCCACGTTCTA 58.798 43.478 0.00 0.00 0.00 2.10
395 396 4.825634 TCCGAGATGTATTCCACGTTCTAT 59.174 41.667 0.00 0.00 0.00 1.98
396 397 4.917998 CCGAGATGTATTCCACGTTCTATG 59.082 45.833 0.00 0.00 0.00 2.23
397 398 4.917998 CGAGATGTATTCCACGTTCTATGG 59.082 45.833 0.00 0.00 38.71 2.74
398 399 4.632153 AGATGTATTCCACGTTCTATGGC 58.368 43.478 0.00 0.00 37.13 4.40
399 400 4.345257 AGATGTATTCCACGTTCTATGGCT 59.655 41.667 0.00 0.00 37.13 4.75
400 401 4.481368 TGTATTCCACGTTCTATGGCTT 57.519 40.909 0.00 0.00 37.13 4.35
401 402 5.601583 TGTATTCCACGTTCTATGGCTTA 57.398 39.130 0.00 0.00 37.13 3.09
402 403 6.169557 TGTATTCCACGTTCTATGGCTTAT 57.830 37.500 0.00 0.00 37.13 1.73
403 404 5.989168 TGTATTCCACGTTCTATGGCTTATG 59.011 40.000 0.00 0.00 37.13 1.90
404 405 4.746535 TTCCACGTTCTATGGCTTATGA 57.253 40.909 0.00 0.00 37.13 2.15
405 406 4.746535 TCCACGTTCTATGGCTTATGAA 57.253 40.909 0.00 0.00 37.13 2.57
406 407 5.290493 TCCACGTTCTATGGCTTATGAAT 57.710 39.130 0.00 0.00 37.13 2.57
407 408 5.056480 TCCACGTTCTATGGCTTATGAATG 58.944 41.667 0.00 0.00 37.13 2.67
408 409 5.056480 CCACGTTCTATGGCTTATGAATGA 58.944 41.667 13.53 0.00 31.92 2.57
409 410 5.527214 CCACGTTCTATGGCTTATGAATGAA 59.473 40.000 13.53 0.00 31.92 2.57
410 411 6.205464 CCACGTTCTATGGCTTATGAATGAAT 59.795 38.462 13.53 0.00 31.92 2.57
411 412 7.387673 CCACGTTCTATGGCTTATGAATGAATA 59.612 37.037 13.53 0.00 31.92 1.75
412 413 8.773645 CACGTTCTATGGCTTATGAATGAATAA 58.226 33.333 13.53 0.00 31.92 1.40
413 414 9.337396 ACGTTCTATGGCTTATGAATGAATAAA 57.663 29.630 13.53 0.00 31.92 1.40
414 415 9.599322 CGTTCTATGGCTTATGAATGAATAAAC 57.401 33.333 0.00 0.00 0.00 2.01
418 419 9.903682 CTATGGCTTATGAATGAATAAACTTGG 57.096 33.333 0.00 0.00 0.00 3.61
419 420 7.716799 TGGCTTATGAATGAATAAACTTGGT 57.283 32.000 0.00 0.00 0.00 3.67
420 421 8.133024 TGGCTTATGAATGAATAAACTTGGTT 57.867 30.769 0.00 0.00 0.00 3.67
421 422 8.250332 TGGCTTATGAATGAATAAACTTGGTTC 58.750 33.333 0.00 0.00 0.00 3.62
422 423 7.706607 GGCTTATGAATGAATAAACTTGGTTCC 59.293 37.037 0.00 0.00 0.00 3.62
423 424 7.706607 GCTTATGAATGAATAAACTTGGTTCCC 59.293 37.037 0.00 0.00 0.00 3.97
424 425 5.993748 TGAATGAATAAACTTGGTTCCCC 57.006 39.130 0.00 0.00 0.00 4.81
425 426 5.650283 TGAATGAATAAACTTGGTTCCCCT 58.350 37.500 0.00 0.00 0.00 4.79
426 427 6.081356 TGAATGAATAAACTTGGTTCCCCTT 58.919 36.000 0.00 0.00 0.00 3.95
427 428 7.242359 TGAATGAATAAACTTGGTTCCCCTTA 58.758 34.615 0.00 0.00 0.00 2.69
428 429 7.730784 TGAATGAATAAACTTGGTTCCCCTTAA 59.269 33.333 0.00 0.00 0.00 1.85
429 430 8.499288 AATGAATAAACTTGGTTCCCCTTAAA 57.501 30.769 0.00 0.00 0.00 1.52
430 431 7.916077 TGAATAAACTTGGTTCCCCTTAAAA 57.084 32.000 0.00 0.00 0.00 1.52
431 432 8.320338 TGAATAAACTTGGTTCCCCTTAAAAA 57.680 30.769 0.00 0.00 0.00 1.94
451 452 1.507141 AAACCAGGAGCGCTTGTTCG 61.507 55.000 13.26 0.61 0.00 3.95
454 455 1.961277 CAGGAGCGCTTGTTCGGTT 60.961 57.895 13.26 0.00 40.51 4.44
455 456 1.961277 AGGAGCGCTTGTTCGGTTG 60.961 57.895 13.26 0.00 40.51 3.77
470 472 3.283684 TTGTGCCCGTGCCTTTCG 61.284 61.111 0.00 0.00 36.33 3.46
475 477 1.175983 TGCCCGTGCCTTTCGAAAAT 61.176 50.000 12.41 0.00 36.33 1.82
506 508 8.452989 AAAAACATATTTTTAGCTTCTGCGAG 57.547 30.769 0.00 0.00 44.44 5.03
507 509 6.985188 AACATATTTTTAGCTTCTGCGAGA 57.015 33.333 0.00 0.00 45.42 4.04
508 510 6.985188 ACATATTTTTAGCTTCTGCGAGAA 57.015 33.333 0.00 0.00 45.42 2.87
527 529 1.803334 AGCATGGTTTCGCTTTCGTA 58.197 45.000 0.00 0.00 33.81 3.43
548 550 6.549736 TCGTAAGAGGTATGATTCTGATTCCA 59.450 38.462 0.00 0.00 45.01 3.53
549 551 6.642950 CGTAAGAGGTATGATTCTGATTCCAC 59.357 42.308 0.00 0.00 43.02 4.02
554 556 5.010516 AGGTATGATTCTGATTCCACGAGAG 59.989 44.000 0.00 0.00 0.00 3.20
556 558 2.159043 TGATTCTGATTCCACGAGAGGC 60.159 50.000 0.00 0.00 0.00 4.70
558 560 0.532573 TCTGATTCCACGAGAGGCAC 59.467 55.000 0.00 0.00 0.00 5.01
559 561 0.247460 CTGATTCCACGAGAGGCACA 59.753 55.000 0.00 0.00 0.00 4.57
561 563 0.247736 GATTCCACGAGAGGCACAGT 59.752 55.000 0.00 0.00 0.00 3.55
562 564 0.247736 ATTCCACGAGAGGCACAGTC 59.752 55.000 0.00 0.00 0.00 3.51
563 565 1.112916 TTCCACGAGAGGCACAGTCA 61.113 55.000 0.00 0.00 0.00 3.41
577 579 3.611057 GCACAGTCATGCCTCTCAAAAAG 60.611 47.826 0.00 0.00 39.86 2.27
626 631 3.807538 GCGAGAGGCACGGACGTA 61.808 66.667 0.00 0.00 42.87 3.57
630 635 0.745845 GAGAGGCACGGACGTACCTA 60.746 60.000 15.99 0.00 41.64 3.08
633 638 1.949525 GAGGCACGGACGTACCTATTA 59.050 52.381 15.99 0.00 41.64 0.98
634 639 1.952296 AGGCACGGACGTACCTATTAG 59.048 52.381 14.57 0.00 39.92 1.73
635 640 1.949525 GGCACGGACGTACCTATTAGA 59.050 52.381 6.85 0.00 36.31 2.10
636 641 2.358898 GGCACGGACGTACCTATTAGAA 59.641 50.000 6.85 0.00 36.31 2.10
638 643 3.793492 GCACGGACGTACCTATTAGAAAC 59.207 47.826 0.00 0.00 36.31 2.78
641 646 4.394920 ACGGACGTACCTATTAGAAACGAA 59.605 41.667 18.53 0.00 37.04 3.85
642 647 5.106317 ACGGACGTACCTATTAGAAACGAAA 60.106 40.000 18.53 0.00 37.04 3.46
643 648 5.799936 CGGACGTACCTATTAGAAACGAAAA 59.200 40.000 18.53 0.00 37.04 2.29
695 717 3.799753 CGTGCCTCTCGGAAATGG 58.200 61.111 0.00 0.00 0.00 3.16
696 718 2.464459 CGTGCCTCTCGGAAATGGC 61.464 63.158 8.15 8.15 45.10 4.40
698 720 3.502572 GCCTCTCGGAAATGGCAC 58.497 61.111 9.68 0.00 44.34 5.01
706 728 0.962356 CGGAAATGGCACAGCTTCCT 60.962 55.000 14.12 0.00 46.22 3.36
707 729 3.141937 CGGAAATGGCACAGCTTCCTG 62.142 57.143 14.12 7.14 46.22 3.86
711 733 3.025924 TGGCACAGCTTCCTGAAAG 57.974 52.632 0.00 0.00 41.77 2.62
712 734 0.473755 TGGCACAGCTTCCTGAAAGA 59.526 50.000 0.00 0.00 41.77 2.52
713 735 1.163554 GGCACAGCTTCCTGAAAGAG 58.836 55.000 0.00 0.00 41.77 2.85
719 741 5.277047 CACAGCTTCCTGAAAGAGAAAAAC 58.723 41.667 0.00 0.00 41.77 2.43
724 746 4.853924 TCCTGAAAGAGAAAAACCATGC 57.146 40.909 0.00 0.00 34.07 4.06
727 749 5.010012 TCCTGAAAGAGAAAAACCATGCTTC 59.990 40.000 0.00 0.00 34.07 3.86
729 751 3.923017 AAGAGAAAAACCATGCTTCCG 57.077 42.857 0.00 0.00 0.00 4.30
730 752 2.162681 AGAGAAAAACCATGCTTCCGG 58.837 47.619 0.00 0.00 0.00 5.14
732 754 1.613437 AGAAAAACCATGCTTCCGGTG 59.387 47.619 0.00 0.00 35.08 4.94
734 756 0.673437 AAAACCATGCTTCCGGTGTG 59.327 50.000 0.00 0.00 35.08 3.82
735 757 1.178534 AAACCATGCTTCCGGTGTGG 61.179 55.000 0.00 6.57 35.08 4.17
784 806 7.749539 AAAAAGTTTGTCAAGAATACCAACG 57.250 32.000 0.00 0.00 30.15 4.10
786 808 3.059188 AGTTTGTCAAGAATACCAACGCG 60.059 43.478 3.53 3.53 30.15 6.01
787 809 2.442212 TGTCAAGAATACCAACGCGA 57.558 45.000 15.93 0.00 0.00 5.87
788 810 2.333926 TGTCAAGAATACCAACGCGAG 58.666 47.619 15.93 4.40 0.00 5.03
789 811 1.659098 GTCAAGAATACCAACGCGAGG 59.341 52.381 15.93 17.40 0.00 4.63
791 813 2.028839 TCAAGAATACCAACGCGAGGAA 60.029 45.455 24.75 2.71 0.00 3.36
793 815 3.261981 AGAATACCAACGCGAGGAATT 57.738 42.857 24.75 12.35 0.00 2.17
795 817 2.684001 ATACCAACGCGAGGAATTCA 57.316 45.000 24.75 8.06 0.00 2.57
796 818 2.459060 TACCAACGCGAGGAATTCAA 57.541 45.000 24.75 4.50 0.00 2.69
797 819 1.821216 ACCAACGCGAGGAATTCAAT 58.179 45.000 24.75 0.00 0.00 2.57
798 820 1.468520 ACCAACGCGAGGAATTCAATG 59.531 47.619 24.75 0.00 0.00 2.82
799 821 1.737236 CCAACGCGAGGAATTCAATGA 59.263 47.619 15.93 0.00 0.00 2.57
801 823 3.559655 CCAACGCGAGGAATTCAATGATA 59.440 43.478 15.93 0.00 0.00 2.15
802 824 4.035091 CCAACGCGAGGAATTCAATGATAA 59.965 41.667 15.93 0.00 0.00 1.75
803 825 5.448496 CCAACGCGAGGAATTCAATGATAAA 60.448 40.000 15.93 0.00 0.00 1.40
804 826 5.811399 ACGCGAGGAATTCAATGATAAAA 57.189 34.783 15.93 0.00 0.00 1.52
805 827 6.189677 ACGCGAGGAATTCAATGATAAAAA 57.810 33.333 15.93 0.00 0.00 1.94
806 828 6.795399 ACGCGAGGAATTCAATGATAAAAAT 58.205 32.000 15.93 0.00 0.00 1.82
807 829 6.692681 ACGCGAGGAATTCAATGATAAAAATG 59.307 34.615 15.93 0.00 0.00 2.32
808 830 6.912051 CGCGAGGAATTCAATGATAAAAATGA 59.088 34.615 0.00 0.00 0.00 2.57
809 831 7.592533 CGCGAGGAATTCAATGATAAAAATGAT 59.407 33.333 0.00 0.00 0.00 2.45
810 832 9.252962 GCGAGGAATTCAATGATAAAAATGATT 57.747 29.630 7.93 0.00 0.00 2.57
829 851 2.853731 TCAAAATTTGAACGCACGGT 57.146 40.000 5.87 0.00 36.59 4.83
830 852 3.152261 TCAAAATTTGAACGCACGGTT 57.848 38.095 5.87 0.00 42.96 4.44
831 853 3.512680 TCAAAATTTGAACGCACGGTTT 58.487 36.364 5.87 0.00 39.50 3.27
832 854 4.669318 TCAAAATTTGAACGCACGGTTTA 58.331 34.783 5.87 0.00 39.50 2.01
833 855 5.100259 TCAAAATTTGAACGCACGGTTTAA 58.900 33.333 5.87 0.00 39.50 1.52
834 856 5.230306 TCAAAATTTGAACGCACGGTTTAAG 59.770 36.000 5.87 0.00 39.50 1.85
835 857 4.555348 AATTTGAACGCACGGTTTAAGA 57.445 36.364 0.00 0.00 39.50 2.10
836 858 4.555348 ATTTGAACGCACGGTTTAAGAA 57.445 36.364 0.00 0.00 39.50 2.52
837 859 4.352600 TTTGAACGCACGGTTTAAGAAA 57.647 36.364 0.00 0.00 39.50 2.52
838 860 4.555348 TTGAACGCACGGTTTAAGAAAT 57.445 36.364 0.00 0.00 39.50 2.17
839 861 5.670149 TTGAACGCACGGTTTAAGAAATA 57.330 34.783 0.00 0.00 39.50 1.40
840 862 5.670149 TGAACGCACGGTTTAAGAAATAA 57.330 34.783 0.00 0.00 39.50 1.40
841 863 6.057627 TGAACGCACGGTTTAAGAAATAAA 57.942 33.333 0.00 0.00 39.50 1.40
842 864 6.493116 TGAACGCACGGTTTAAGAAATAAAA 58.507 32.000 0.00 0.00 39.50 1.52
843 865 7.140048 TGAACGCACGGTTTAAGAAATAAAAT 58.860 30.769 0.00 0.00 39.50 1.82
844 866 6.921332 ACGCACGGTTTAAGAAATAAAATG 57.079 33.333 0.00 0.00 35.33 2.32
845 867 6.440436 ACGCACGGTTTAAGAAATAAAATGT 58.560 32.000 0.00 0.00 35.33 2.71
846 868 6.919115 ACGCACGGTTTAAGAAATAAAATGTT 59.081 30.769 0.00 0.00 35.33 2.71
847 869 7.435784 ACGCACGGTTTAAGAAATAAAATGTTT 59.564 29.630 0.00 0.00 35.33 2.83
848 870 8.270111 CGCACGGTTTAAGAAATAAAATGTTTT 58.730 29.630 0.00 0.00 35.33 2.43
849 871 9.364110 GCACGGTTTAAGAAATAAAATGTTTTG 57.636 29.630 1.16 0.00 35.33 2.44
865 887 9.541143 AAAATGTTTTGAATAAACGAATCCACT 57.459 25.926 0.00 0.00 33.05 4.00
866 888 9.541143 AAATGTTTTGAATAAACGAATCCACTT 57.459 25.926 0.00 0.00 33.05 3.16
867 889 7.922505 TGTTTTGAATAAACGAATCCACTTG 57.077 32.000 0.00 0.00 33.05 3.16
868 890 7.484975 TGTTTTGAATAAACGAATCCACTTGT 58.515 30.769 0.00 0.00 33.05 3.16
869 891 7.646130 TGTTTTGAATAAACGAATCCACTTGTC 59.354 33.333 0.00 0.00 33.05 3.18
870 892 5.524511 TGAATAAACGAATCCACTTGTCG 57.475 39.130 0.00 0.00 40.56 4.35
871 893 4.142988 TGAATAAACGAATCCACTTGTCGC 60.143 41.667 0.00 0.00 38.33 5.19
872 894 1.588674 AAACGAATCCACTTGTCGCA 58.411 45.000 0.00 0.00 38.33 5.10
873 895 1.588674 AACGAATCCACTTGTCGCAA 58.411 45.000 0.00 0.00 38.33 4.85
874 896 0.865769 ACGAATCCACTTGTCGCAAC 59.134 50.000 0.00 0.00 38.33 4.17
875 897 1.148310 CGAATCCACTTGTCGCAACT 58.852 50.000 0.00 0.00 0.00 3.16
876 898 1.531149 CGAATCCACTTGTCGCAACTT 59.469 47.619 0.00 0.00 0.00 2.66
877 899 2.662791 CGAATCCACTTGTCGCAACTTG 60.663 50.000 0.00 0.00 0.00 3.16
878 900 1.238439 ATCCACTTGTCGCAACTTGG 58.762 50.000 8.20 8.20 0.00 3.61
1183 1205 4.838152 CGCAGCTACCACCGGCAT 62.838 66.667 0.00 0.00 0.00 4.40
1227 1250 4.629122 TCCTCCTTGAATCTGATCCTCTT 58.371 43.478 0.00 0.00 0.00 2.85
1294 1317 7.543172 ACAAGCTGCACATATATTTTGTTTGAG 59.457 33.333 1.02 0.00 0.00 3.02
1322 1347 7.986085 TTCTCAGTTTCTCCCTAAATTTCAG 57.014 36.000 0.00 0.00 0.00 3.02
1365 1391 7.551617 TCATCTCATTACCAATATGCTAGCATG 59.448 37.037 35.20 22.54 37.82 4.06
1565 1620 5.114764 TGCCAGTGATCCAGAATTTGATA 57.885 39.130 0.00 0.00 0.00 2.15
1844 2007 1.358152 ACAGGTCGATTCCCCTTCAA 58.642 50.000 0.00 0.00 0.00 2.69
1902 2068 1.405463 TGCATAGACTGAGTACAGCGG 59.595 52.381 0.00 0.00 46.95 5.52
1912 2078 3.691342 TACAGCGGAAGTGGCGCT 61.691 61.111 7.64 0.00 39.77 5.92
2215 2381 5.689383 TTATTGACAAGACAGCTTTGGAC 57.311 39.130 1.91 0.00 30.14 4.02
2304 2919 3.846423 ATGTAATGCGATGTGTGCAAA 57.154 38.095 0.00 0.00 46.87 3.68
2531 3146 0.035317 AGGCATTGTTCGCACTCTCA 59.965 50.000 0.00 0.00 0.00 3.27
3096 3713 3.630312 TGTAAAGGTTGGTTTGCTGTCTC 59.370 43.478 0.00 0.00 0.00 3.36
3500 4159 5.127519 TCATTTGGATGCTTTATCTTGGGTG 59.872 40.000 0.00 0.00 36.03 4.61
3556 4216 7.405769 GCTTCTTGCTTCTCATCTATACAAAC 58.594 38.462 0.00 0.00 38.95 2.93
3574 4234 2.046988 TGTGACTGCTGCCATCCG 60.047 61.111 0.00 0.00 0.00 4.18
3774 4434 4.887071 ACATGTTGCCACTTCTTTACTTCA 59.113 37.500 0.00 0.00 0.00 3.02
4004 4988 9.672673 CACTAATCTTCTTTTGAGGGAGAATAA 57.327 33.333 0.00 0.00 31.97 1.40
4140 5126 0.997932 CTGCTCTGCTAACTTGCTCG 59.002 55.000 0.00 0.00 0.00 5.03
4332 5326 7.596749 TCTTTCTTCCTTATTTACTTGCTCG 57.403 36.000 0.00 0.00 0.00 5.03
4353 5347 3.179830 GTCGTGTTATCTGCACCTACAG 58.820 50.000 0.00 0.00 39.12 2.74
4490 5494 1.870055 AAGCAATGCCCTGAAGCGTG 61.870 55.000 0.00 0.00 34.65 5.34
4727 5759 0.459237 CCTGCAGAGTTAGCCAGTCG 60.459 60.000 17.39 0.00 0.00 4.18
4824 5875 1.211212 TCACTGCATATTGGCTCTGCT 59.789 47.619 0.00 0.00 36.84 4.24
5011 6076 2.958578 AAACTCGCCCACACACCCTG 62.959 60.000 0.00 0.00 0.00 4.45
5054 6119 3.314357 GTCACTGTATGCATGCATGTGAT 59.686 43.478 35.54 22.18 35.24 3.06
5159 6229 5.407502 TCGCGATGAGATCTTTGAAACTAA 58.592 37.500 3.71 0.00 0.00 2.24
5251 6324 4.517453 GCCATGGTGTTTACACTGAAGTTA 59.483 41.667 14.67 0.00 45.73 2.24
5255 6328 4.877251 TGGTGTTTACACTGAAGTTACCAC 59.123 41.667 12.32 0.00 45.73 4.16
5349 6423 5.431765 ACTAGACTTGCCATGAACCATAAG 58.568 41.667 0.00 0.00 0.00 1.73
5386 6460 6.331845 TGATACATGCACTTAAAATTGCCAG 58.668 36.000 0.00 0.00 38.00 4.85
5389 6463 1.001860 TGCACTTAAAATTGCCAGGGC 59.998 47.619 2.62 2.62 38.00 5.19
5440 6515 1.913778 ACTGCAGTTGCCATCATCAA 58.086 45.000 15.25 0.00 41.18 2.57
5451 6526 9.421806 CAGTTGCCATCATCAAAATACTAAAAA 57.578 29.630 0.00 0.00 0.00 1.94
5480 6555 4.523943 TGCTCTACAAACTGAAATTGCCAT 59.476 37.500 0.00 0.00 0.00 4.40
5537 6612 9.669353 CTATAATGTAAACATCATGGCAACTTC 57.331 33.333 0.00 0.00 35.10 3.01
5618 6697 7.603963 TCGAGACGGATTTAATGATGAAAAA 57.396 32.000 0.00 0.00 0.00 1.94
5685 6765 2.729360 GCCGAAAACCAAAAAGATTCCG 59.271 45.455 0.00 0.00 0.00 4.30
5710 6790 5.756833 GCTGATGTCATCTATTCACATGTGA 59.243 40.000 24.56 24.56 37.91 3.58
5739 6819 0.470766 TGGTAAAGAAGGCGTGTGGT 59.529 50.000 0.00 0.00 0.00 4.16
5741 6821 1.541670 GGTAAAGAAGGCGTGTGGTCA 60.542 52.381 0.00 0.00 0.00 4.02
5819 6899 5.059161 GCTCACCATCTCAAGTGCATTATA 58.941 41.667 0.00 0.00 33.90 0.98
5849 6933 2.549754 CTGTGTCCGTGCAGAAATTCTT 59.450 45.455 0.00 0.00 34.87 2.52
5856 6940 3.304559 CCGTGCAGAAATTCTTCTACTCG 59.695 47.826 0.00 3.68 40.05 4.18
5861 6945 4.679372 GCAGAAATTCTTCTACTCGCTCCT 60.679 45.833 0.00 0.00 40.05 3.69
5881 6969 5.431765 TCCTTCCAGAATTAGTTGATGCTC 58.568 41.667 0.00 0.00 0.00 4.26
5882 6970 5.045651 TCCTTCCAGAATTAGTTGATGCTCA 60.046 40.000 0.00 0.00 0.00 4.26
5907 6995 7.208225 TCAAACGGATGTATCTAGATCAGAG 57.792 40.000 8.95 5.86 36.48 3.35
5911 6999 5.878116 ACGGATGTATCTAGATCAGAGTAGC 59.122 44.000 8.95 0.00 36.48 3.58
5912 7000 5.877564 CGGATGTATCTAGATCAGAGTAGCA 59.122 44.000 8.95 0.00 36.48 3.49
5915 7003 8.026607 GGATGTATCTAGATCAGAGTAGCAAAC 58.973 40.741 8.95 0.00 36.48 2.93
6074 7997 0.742505 TACCGATCTGTACCCAAGCG 59.257 55.000 0.00 0.00 0.00 4.68
6123 8055 2.932614 GTTCACGAATGCTGCTCATACT 59.067 45.455 0.00 0.00 34.33 2.12
6124 8056 3.251479 TCACGAATGCTGCTCATACTT 57.749 42.857 0.00 0.00 34.33 2.24
6125 8057 2.931969 TCACGAATGCTGCTCATACTTG 59.068 45.455 0.00 0.00 34.33 3.16
6126 8058 1.667724 ACGAATGCTGCTCATACTTGC 59.332 47.619 0.00 0.00 34.33 4.01
6127 8059 1.667212 CGAATGCTGCTCATACTTGCA 59.333 47.619 0.00 0.00 38.05 4.08
6128 8060 2.538333 CGAATGCTGCTCATACTTGCAC 60.538 50.000 0.00 0.00 36.44 4.57
6129 8061 2.414994 ATGCTGCTCATACTTGCACT 57.585 45.000 0.00 0.00 36.44 4.40
6130 8062 1.445871 TGCTGCTCATACTTGCACTG 58.554 50.000 0.00 0.00 35.20 3.66
6183 8115 5.277731 GCTGCCATCAGAATAAAGCTTCTAC 60.278 44.000 0.00 0.00 42.95 2.59
6223 8155 9.543783 AGATCAAGAATAAACGGGATAACTTAC 57.456 33.333 0.00 0.00 0.00 2.34
6242 8174 3.386768 ACAACTTGTGATACACGAGCT 57.613 42.857 16.16 4.55 46.60 4.09
6377 8309 0.984995 GTTGGCACCCTTAGGACTCT 59.015 55.000 0.00 0.00 36.73 3.24
6440 8372 1.999024 GCAGCTTCCTCTCTTTCTTCG 59.001 52.381 0.00 0.00 0.00 3.79
6533 8468 1.552792 GCCTCTAACTCCTCTTGCAGT 59.447 52.381 0.00 0.00 0.00 4.40
6549 8484 4.487714 TGCAGTATGGAAACCTAAGGAG 57.512 45.455 0.00 0.00 35.86 3.69
6640 8577 4.572389 CCTACCATTTCATTTGACCTCTCG 59.428 45.833 0.00 0.00 0.00 4.04
6721 8661 6.704937 GGTTAAGTACCTCCATGTTAGCATAC 59.295 42.308 0.00 0.00 44.10 2.39
6799 8748 9.699703 TCCACCAGCTTTAACAATTTTTATAAC 57.300 29.630 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.738350 CTCTCGTCTGTCCGCTTAAGA 59.262 52.381 6.67 0.00 0.00 2.10
68 69 1.738350 TCTCTCGTCTGTCCGCTTAAG 59.262 52.381 0.00 0.00 0.00 1.85
69 70 1.738350 CTCTCTCGTCTGTCCGCTTAA 59.262 52.381 0.00 0.00 0.00 1.85
70 71 1.370609 CTCTCTCGTCTGTCCGCTTA 58.629 55.000 0.00 0.00 0.00 3.09
71 72 1.928706 GCTCTCTCGTCTGTCCGCTT 61.929 60.000 0.00 0.00 0.00 4.68
72 73 2.403378 GCTCTCTCGTCTGTCCGCT 61.403 63.158 0.00 0.00 0.00 5.52
73 74 2.101380 GCTCTCTCGTCTGTCCGC 59.899 66.667 0.00 0.00 0.00 5.54
74 75 1.021920 TCAGCTCTCTCGTCTGTCCG 61.022 60.000 0.00 0.00 0.00 4.79
75 76 0.732571 CTCAGCTCTCTCGTCTGTCC 59.267 60.000 0.00 0.00 0.00 4.02
76 77 0.098728 GCTCAGCTCTCTCGTCTGTC 59.901 60.000 0.00 0.00 0.00 3.51
77 78 1.643868 CGCTCAGCTCTCTCGTCTGT 61.644 60.000 0.00 0.00 0.00 3.41
78 79 1.062365 CGCTCAGCTCTCTCGTCTG 59.938 63.158 0.00 0.00 0.00 3.51
79 80 1.078778 TCGCTCAGCTCTCTCGTCT 60.079 57.895 0.00 0.00 0.00 4.18
80 81 1.351707 CTCGCTCAGCTCTCTCGTC 59.648 63.158 0.00 0.00 0.00 4.20
81 82 2.112198 CCTCGCTCAGCTCTCTCGT 61.112 63.158 0.00 0.00 0.00 4.18
82 83 2.715005 CCTCGCTCAGCTCTCTCG 59.285 66.667 0.00 0.00 0.00 4.04
83 84 2.412937 GCCTCGCTCAGCTCTCTC 59.587 66.667 0.00 0.00 0.00 3.20
84 85 3.517140 CGCCTCGCTCAGCTCTCT 61.517 66.667 0.00 0.00 0.00 3.10
85 86 4.567385 CCGCCTCGCTCAGCTCTC 62.567 72.222 0.00 0.00 0.00 3.20
87 88 4.863925 GTCCGCCTCGCTCAGCTC 62.864 72.222 0.00 0.00 0.00 4.09
103 104 3.646637 CCCATTAATACTCCTTCCCTCGT 59.353 47.826 0.00 0.00 0.00 4.18
130 131 0.107654 ACTAGCGATTGACAAGGGCC 60.108 55.000 0.00 0.00 0.00 5.80
135 136 0.323302 TGCCCACTAGCGATTGACAA 59.677 50.000 0.00 0.00 34.65 3.18
183 184 4.474846 CGCACGAAATTGGGCCGG 62.475 66.667 0.00 0.00 0.00 6.13
194 195 2.030412 AAGTGGTCATGCGCACGA 59.970 55.556 14.90 7.41 0.00 4.35
208 209 1.367840 GCCACTCCACGAGACAAGT 59.632 57.895 0.00 0.00 33.32 3.16
220 221 1.086634 GTTGCTCTCCGATGCCACTC 61.087 60.000 0.00 0.00 0.00 3.51
229 230 0.895530 TCCTGGTTAGTTGCTCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
241 242 1.202770 AGTAAACAAGCGCTCCTGGTT 60.203 47.619 16.10 16.10 39.45 3.67
243 244 1.197721 CAAGTAAACAAGCGCTCCTGG 59.802 52.381 12.06 3.26 0.00 4.45
244 245 1.873591 ACAAGTAAACAAGCGCTCCTG 59.126 47.619 12.06 9.39 0.00 3.86
245 246 2.256117 ACAAGTAAACAAGCGCTCCT 57.744 45.000 12.06 0.00 0.00 3.69
246 247 4.680171 ATTACAAGTAAACAAGCGCTCC 57.320 40.909 12.06 0.00 0.00 4.70
247 248 5.280678 CGAAATTACAAGTAAACAAGCGCTC 59.719 40.000 12.06 0.00 0.00 5.03
248 249 5.144359 CGAAATTACAAGTAAACAAGCGCT 58.856 37.500 2.64 2.64 0.00 5.92
249 250 4.907582 ACGAAATTACAAGTAAACAAGCGC 59.092 37.500 0.00 0.00 0.00 5.92
250 251 6.963017 AACGAAATTACAAGTAAACAAGCG 57.037 33.333 0.00 0.00 0.00 4.68
259 260 9.771915 TCGACTTTTAAAAACGAAATTACAAGT 57.228 25.926 19.97 0.00 35.71 3.16
267 268 7.232994 TCGAGTTTCGACTTTTAAAAACGAAA 58.767 30.769 29.67 29.67 44.82 3.46
268 269 6.760127 TCGAGTTTCGACTTTTAAAAACGAA 58.240 32.000 24.93 24.93 44.82 3.85
269 270 6.329838 TCGAGTTTCGACTTTTAAAAACGA 57.670 33.333 19.00 19.00 44.82 3.85
301 302 3.629398 ACAAACTTGGCTATGCTATGAGC 59.371 43.478 0.00 0.00 42.82 4.26
302 303 5.503031 CGAACAAACTTGGCTATGCTATGAG 60.503 44.000 0.00 0.00 0.00 2.90
303 304 4.332543 CGAACAAACTTGGCTATGCTATGA 59.667 41.667 0.00 0.00 0.00 2.15
304 305 4.094887 ACGAACAAACTTGGCTATGCTATG 59.905 41.667 0.00 0.00 0.00 2.23
305 306 4.261801 ACGAACAAACTTGGCTATGCTAT 58.738 39.130 0.00 0.00 0.00 2.97
306 307 3.670625 ACGAACAAACTTGGCTATGCTA 58.329 40.909 0.00 0.00 0.00 3.49
307 308 2.504367 ACGAACAAACTTGGCTATGCT 58.496 42.857 0.00 0.00 0.00 3.79
308 309 2.989422 ACGAACAAACTTGGCTATGC 57.011 45.000 0.00 0.00 0.00 3.14
309 310 4.749245 AGAACGAACAAACTTGGCTATG 57.251 40.909 0.00 0.00 0.00 2.23
310 311 5.767816 AAAGAACGAACAAACTTGGCTAT 57.232 34.783 0.00 0.00 0.00 2.97
311 312 5.237779 CCTAAAGAACGAACAAACTTGGCTA 59.762 40.000 0.00 0.00 0.00 3.93
312 313 4.036380 CCTAAAGAACGAACAAACTTGGCT 59.964 41.667 0.00 0.00 0.00 4.75
313 314 4.201980 ACCTAAAGAACGAACAAACTTGGC 60.202 41.667 0.00 0.00 0.00 4.52
314 315 5.065474 TGACCTAAAGAACGAACAAACTTGG 59.935 40.000 0.00 0.00 0.00 3.61
315 316 6.114221 TGACCTAAAGAACGAACAAACTTG 57.886 37.500 0.00 0.00 0.00 3.16
316 317 5.296035 CCTGACCTAAAGAACGAACAAACTT 59.704 40.000 0.00 0.00 0.00 2.66
317 318 4.814771 CCTGACCTAAAGAACGAACAAACT 59.185 41.667 0.00 0.00 0.00 2.66
318 319 4.024302 CCCTGACCTAAAGAACGAACAAAC 60.024 45.833 0.00 0.00 0.00 2.93
319 320 4.131596 CCCTGACCTAAAGAACGAACAAA 58.868 43.478 0.00 0.00 0.00 2.83
320 321 3.495453 CCCCTGACCTAAAGAACGAACAA 60.495 47.826 0.00 0.00 0.00 2.83
321 322 2.038033 CCCCTGACCTAAAGAACGAACA 59.962 50.000 0.00 0.00 0.00 3.18
322 323 2.696506 CCCCTGACCTAAAGAACGAAC 58.303 52.381 0.00 0.00 0.00 3.95
323 324 1.002773 GCCCCTGACCTAAAGAACGAA 59.997 52.381 0.00 0.00 0.00 3.85
324 325 0.611714 GCCCCTGACCTAAAGAACGA 59.388 55.000 0.00 0.00 0.00 3.85
325 326 0.739813 CGCCCCTGACCTAAAGAACG 60.740 60.000 0.00 0.00 0.00 3.95
326 327 1.025113 GCGCCCCTGACCTAAAGAAC 61.025 60.000 0.00 0.00 0.00 3.01
327 328 1.298667 GCGCCCCTGACCTAAAGAA 59.701 57.895 0.00 0.00 0.00 2.52
328 329 2.666098 GGCGCCCCTGACCTAAAGA 61.666 63.158 18.11 0.00 0.00 2.52
329 330 2.124695 GGCGCCCCTGACCTAAAG 60.125 66.667 18.11 0.00 0.00 1.85
330 331 2.931105 TGGCGCCCCTGACCTAAA 60.931 61.111 26.77 0.00 0.00 1.85
331 332 3.712907 GTGGCGCCCCTGACCTAA 61.713 66.667 26.77 0.00 0.00 2.69
354 355 1.679559 GATCATGGGGTTGGCCAAGC 61.680 60.000 34.59 34.59 38.03 4.01
355 356 1.044790 GGATCATGGGGTTGGCCAAG 61.045 60.000 21.21 6.06 36.17 3.61
356 357 1.001503 GGATCATGGGGTTGGCCAA 59.998 57.895 16.05 16.05 36.17 4.52
357 358 2.689175 GGATCATGGGGTTGGCCA 59.311 61.111 0.00 0.00 36.17 5.36
358 359 2.519302 CGGATCATGGGGTTGGCC 60.519 66.667 0.00 0.00 0.00 5.36
359 360 1.526917 CTCGGATCATGGGGTTGGC 60.527 63.158 0.00 0.00 0.00 4.52
360 361 0.767375 ATCTCGGATCATGGGGTTGG 59.233 55.000 0.00 0.00 0.00 3.77
361 362 1.141657 ACATCTCGGATCATGGGGTTG 59.858 52.381 0.00 0.00 0.00 3.77
362 363 1.511613 ACATCTCGGATCATGGGGTT 58.488 50.000 0.00 0.00 0.00 4.11
363 364 2.398754 TACATCTCGGATCATGGGGT 57.601 50.000 0.00 0.00 0.00 4.95
364 365 3.369892 GGAATACATCTCGGATCATGGGG 60.370 52.174 0.00 0.00 0.00 4.96
365 366 3.261643 TGGAATACATCTCGGATCATGGG 59.738 47.826 0.00 0.00 0.00 4.00
366 367 4.248859 GTGGAATACATCTCGGATCATGG 58.751 47.826 0.00 0.00 0.00 3.66
367 368 3.922850 CGTGGAATACATCTCGGATCATG 59.077 47.826 0.00 0.00 0.00 3.07
368 369 3.574396 ACGTGGAATACATCTCGGATCAT 59.426 43.478 0.00 0.00 32.71 2.45
369 370 2.956333 ACGTGGAATACATCTCGGATCA 59.044 45.455 0.00 0.00 32.71 2.92
370 371 3.644884 ACGTGGAATACATCTCGGATC 57.355 47.619 0.00 0.00 32.71 3.36
371 372 3.637229 AGAACGTGGAATACATCTCGGAT 59.363 43.478 0.00 0.00 32.71 4.18
372 373 3.021695 AGAACGTGGAATACATCTCGGA 58.978 45.455 0.00 0.00 32.71 4.55
373 374 3.438297 AGAACGTGGAATACATCTCGG 57.562 47.619 0.00 0.00 32.71 4.63
374 375 4.917998 CCATAGAACGTGGAATACATCTCG 59.082 45.833 0.00 0.00 39.12 4.04
375 376 4.686554 GCCATAGAACGTGGAATACATCTC 59.313 45.833 0.00 0.00 39.12 2.75
376 377 4.345257 AGCCATAGAACGTGGAATACATCT 59.655 41.667 0.00 0.00 39.12 2.90
377 378 4.632153 AGCCATAGAACGTGGAATACATC 58.368 43.478 0.00 0.00 39.12 3.06
378 379 4.689612 AGCCATAGAACGTGGAATACAT 57.310 40.909 0.00 0.00 39.12 2.29
379 380 4.481368 AAGCCATAGAACGTGGAATACA 57.519 40.909 0.00 0.00 39.12 2.29
380 381 6.220930 TCATAAGCCATAGAACGTGGAATAC 58.779 40.000 0.00 0.00 39.12 1.89
381 382 6.413783 TCATAAGCCATAGAACGTGGAATA 57.586 37.500 0.00 0.00 39.12 1.75
382 383 5.290493 TCATAAGCCATAGAACGTGGAAT 57.710 39.130 0.00 0.00 39.12 3.01
383 384 4.746535 TCATAAGCCATAGAACGTGGAA 57.253 40.909 0.00 0.00 39.12 3.53
384 385 4.746535 TTCATAAGCCATAGAACGTGGA 57.253 40.909 0.00 0.00 39.12 4.02
385 386 5.056480 TCATTCATAAGCCATAGAACGTGG 58.944 41.667 0.00 0.00 39.80 4.94
386 387 6.603237 TTCATTCATAAGCCATAGAACGTG 57.397 37.500 0.00 0.00 0.00 4.49
387 388 8.902540 TTATTCATTCATAAGCCATAGAACGT 57.097 30.769 0.00 0.00 0.00 3.99
388 389 9.599322 GTTTATTCATTCATAAGCCATAGAACG 57.401 33.333 0.00 0.00 0.00 3.95
392 393 9.903682 CCAAGTTTATTCATTCATAAGCCATAG 57.096 33.333 0.00 0.00 0.00 2.23
393 394 9.420118 ACCAAGTTTATTCATTCATAAGCCATA 57.580 29.630 0.00 0.00 0.00 2.74
394 395 8.310122 ACCAAGTTTATTCATTCATAAGCCAT 57.690 30.769 0.00 0.00 0.00 4.40
395 396 7.716799 ACCAAGTTTATTCATTCATAAGCCA 57.283 32.000 0.00 0.00 0.00 4.75
396 397 7.706607 GGAACCAAGTTTATTCATTCATAAGCC 59.293 37.037 0.00 0.00 0.00 4.35
397 398 8.634475 GGAACCAAGTTTATTCATTCATAAGC 57.366 34.615 0.00 0.00 0.00 3.09
430 431 1.067060 GAACAAGCGCTCCTGGTTTTT 59.933 47.619 12.06 0.00 37.84 1.94
431 432 0.668535 GAACAAGCGCTCCTGGTTTT 59.331 50.000 12.06 0.00 37.84 2.43
432 433 1.507141 CGAACAAGCGCTCCTGGTTT 61.507 55.000 12.06 0.00 37.84 3.27
433 434 1.961277 CGAACAAGCGCTCCTGGTT 60.961 57.895 12.06 13.37 40.48 3.67
434 435 2.357517 CGAACAAGCGCTCCTGGT 60.358 61.111 12.06 4.29 0.00 4.00
435 436 3.121030 CCGAACAAGCGCTCCTGG 61.121 66.667 12.06 4.93 0.00 4.45
436 437 1.961277 AACCGAACAAGCGCTCCTG 60.961 57.895 12.06 9.39 0.00 3.86
451 452 3.207547 GAAAGGCACGGGCACAACC 62.208 63.158 13.89 0.00 43.71 3.77
454 455 3.758973 TTCGAAAGGCACGGGCACA 62.759 57.895 13.89 0.00 43.71 4.57
455 456 2.065906 TTTTCGAAAGGCACGGGCAC 62.066 55.000 13.89 0.00 43.71 5.01
482 484 7.816640 TCTCGCAGAAGCTAAAAATATGTTTT 58.183 30.769 0.00 0.00 37.62 2.43
483 485 7.377766 TCTCGCAGAAGCTAAAAATATGTTT 57.622 32.000 0.00 0.00 39.10 2.83
484 486 6.985188 TCTCGCAGAAGCTAAAAATATGTT 57.015 33.333 0.00 0.00 39.10 2.71
485 487 6.985188 TTCTCGCAGAAGCTAAAAATATGT 57.015 33.333 0.00 0.00 39.10 2.29
502 504 1.226128 GCGAAACCATGCTTCTCGC 60.226 57.895 11.96 11.96 46.69 5.03
503 505 2.460330 AGCGAAACCATGCTTCTCG 58.540 52.632 0.00 0.00 38.57 4.04
508 510 1.803334 TACGAAAGCGAAACCATGCT 58.197 45.000 0.00 0.00 44.97 3.79
512 514 2.224113 ACCTCTTACGAAAGCGAAACCA 60.224 45.455 0.00 0.00 41.64 3.67
518 520 5.174035 CAGAATCATACCTCTTACGAAAGCG 59.826 44.000 0.00 0.00 44.79 4.68
519 521 6.273825 TCAGAATCATACCTCTTACGAAAGC 58.726 40.000 0.00 0.00 32.36 3.51
520 522 8.879342 AATCAGAATCATACCTCTTACGAAAG 57.121 34.615 0.00 0.00 0.00 2.62
524 526 6.642950 GTGGAATCAGAATCATACCTCTTACG 59.357 42.308 0.00 0.00 0.00 3.18
527 529 5.363868 TCGTGGAATCAGAATCATACCTCTT 59.636 40.000 0.00 0.00 0.00 2.85
533 535 4.262207 GCCTCTCGTGGAATCAGAATCATA 60.262 45.833 0.00 0.00 0.00 2.15
535 537 2.159043 GCCTCTCGTGGAATCAGAATCA 60.159 50.000 0.00 0.00 0.00 2.57
540 542 0.247460 TGTGCCTCTCGTGGAATCAG 59.753 55.000 0.00 0.00 0.00 2.90
543 545 0.247736 GACTGTGCCTCTCGTGGAAT 59.752 55.000 0.00 0.00 0.00 3.01
548 550 1.079543 GCATGACTGTGCCTCTCGT 60.080 57.895 0.00 0.00 39.18 4.18
549 551 3.791539 GCATGACTGTGCCTCTCG 58.208 61.111 0.00 0.00 39.18 4.04
556 558 3.057736 CCTTTTTGAGAGGCATGACTGTG 60.058 47.826 5.31 0.00 0.00 3.66
558 560 3.415212 TCCTTTTTGAGAGGCATGACTG 58.585 45.455 5.31 0.00 34.17 3.51
559 561 3.795688 TCCTTTTTGAGAGGCATGACT 57.204 42.857 0.00 0.00 34.17 3.41
561 563 5.867903 TTTTTCCTTTTTGAGAGGCATGA 57.132 34.783 0.00 0.00 34.17 3.07
609 614 3.807538 TACGTCCGTGCCTCTCGC 61.808 66.667 1.98 0.00 38.31 5.03
610 615 2.099831 GTACGTCCGTGCCTCTCG 59.900 66.667 1.98 0.00 0.00 4.04
619 624 4.536364 TCGTTTCTAATAGGTACGTCCG 57.464 45.455 0.00 0.00 41.99 4.79
620 625 7.581011 TTTTTCGTTTCTAATAGGTACGTCC 57.419 36.000 0.00 0.00 34.15 4.79
653 658 3.129638 CGTGTCTCCCACAAAAGGAAAAA 59.870 43.478 0.00 0.00 44.78 1.94
658 680 1.226746 GTCGTGTCTCCCACAAAAGG 58.773 55.000 0.00 0.00 44.78 3.11
662 684 2.129146 ACGGTCGTGTCTCCCACAA 61.129 57.895 0.00 0.00 44.78 3.33
666 688 4.736896 GGCACGGTCGTGTCTCCC 62.737 72.222 21.94 12.36 46.17 4.30
689 711 1.538047 TCAGGAAGCTGTGCCATTTC 58.462 50.000 0.00 0.00 0.00 2.17
692 714 1.074405 TCTTTCAGGAAGCTGTGCCAT 59.926 47.619 0.00 0.00 35.24 4.40
693 715 0.473755 TCTTTCAGGAAGCTGTGCCA 59.526 50.000 0.00 0.00 35.24 4.92
694 716 1.163554 CTCTTTCAGGAAGCTGTGCC 58.836 55.000 0.00 0.00 35.24 5.01
695 717 2.175878 TCTCTTTCAGGAAGCTGTGC 57.824 50.000 0.00 0.00 35.24 4.57
696 718 5.277047 GTTTTTCTCTTTCAGGAAGCTGTG 58.723 41.667 0.00 0.00 35.24 3.66
697 719 4.339530 GGTTTTTCTCTTTCAGGAAGCTGT 59.660 41.667 0.00 0.00 35.24 4.40
698 720 4.339247 TGGTTTTTCTCTTTCAGGAAGCTG 59.661 41.667 0.00 0.00 35.24 4.24
699 721 4.536765 TGGTTTTTCTCTTTCAGGAAGCT 58.463 39.130 0.00 0.00 35.24 3.74
700 722 4.918810 TGGTTTTTCTCTTTCAGGAAGC 57.081 40.909 0.00 0.00 35.24 3.86
701 723 5.010415 AGCATGGTTTTTCTCTTTCAGGAAG 59.990 40.000 0.00 0.00 36.67 3.46
702 724 4.895297 AGCATGGTTTTTCTCTTTCAGGAA 59.105 37.500 0.00 0.00 0.00 3.36
703 725 4.473444 AGCATGGTTTTTCTCTTTCAGGA 58.527 39.130 0.00 0.00 0.00 3.86
704 726 4.861102 AGCATGGTTTTTCTCTTTCAGG 57.139 40.909 0.00 0.00 0.00 3.86
705 727 5.225642 GGAAGCATGGTTTTTCTCTTTCAG 58.774 41.667 12.13 0.00 0.00 3.02
706 728 4.261572 CGGAAGCATGGTTTTTCTCTTTCA 60.262 41.667 12.13 0.00 0.00 2.69
707 729 4.229876 CGGAAGCATGGTTTTTCTCTTTC 58.770 43.478 12.13 0.00 0.00 2.62
708 730 3.005791 CCGGAAGCATGGTTTTTCTCTTT 59.994 43.478 12.13 0.00 0.00 2.52
709 731 2.558359 CCGGAAGCATGGTTTTTCTCTT 59.442 45.455 12.13 0.00 0.00 2.85
710 732 2.162681 CCGGAAGCATGGTTTTTCTCT 58.837 47.619 12.13 0.00 0.00 3.10
711 733 1.886542 ACCGGAAGCATGGTTTTTCTC 59.113 47.619 9.46 0.00 33.81 2.87
712 734 1.613437 CACCGGAAGCATGGTTTTTCT 59.387 47.619 9.46 0.00 35.96 2.52
713 735 1.339929 ACACCGGAAGCATGGTTTTTC 59.660 47.619 9.46 0.00 35.96 2.29
719 741 1.178534 AAACCACACCGGAAGCATGG 61.179 55.000 9.46 10.53 38.63 3.66
761 783 5.746721 GCGTTGGTATTCTTGACAAACTTTT 59.253 36.000 0.00 0.00 29.84 2.27
763 785 4.553938 CGCGTTGGTATTCTTGACAAACTT 60.554 41.667 0.00 0.00 29.84 2.66
764 786 3.059188 CGCGTTGGTATTCTTGACAAACT 60.059 43.478 0.00 0.00 29.84 2.66
765 787 3.059461 TCGCGTTGGTATTCTTGACAAAC 60.059 43.478 5.77 0.00 0.00 2.93
766 788 3.132160 TCGCGTTGGTATTCTTGACAAA 58.868 40.909 5.77 0.00 0.00 2.83
768 790 2.333926 CTCGCGTTGGTATTCTTGACA 58.666 47.619 5.77 0.00 0.00 3.58
769 791 1.659098 CCTCGCGTTGGTATTCTTGAC 59.341 52.381 5.77 0.00 0.00 3.18
770 792 1.546923 TCCTCGCGTTGGTATTCTTGA 59.453 47.619 17.35 0.00 0.00 3.02
771 793 2.004583 TCCTCGCGTTGGTATTCTTG 57.995 50.000 17.35 0.00 0.00 3.02
772 794 2.754946 TTCCTCGCGTTGGTATTCTT 57.245 45.000 17.35 0.00 0.00 2.52
773 795 2.981859 ATTCCTCGCGTTGGTATTCT 57.018 45.000 17.35 0.00 0.00 2.40
774 796 2.933906 TGAATTCCTCGCGTTGGTATTC 59.066 45.455 27.61 27.61 39.92 1.75
776 798 2.684001 TGAATTCCTCGCGTTGGTAT 57.316 45.000 17.35 12.19 0.00 2.73
777 799 2.459060 TTGAATTCCTCGCGTTGGTA 57.541 45.000 17.35 10.66 0.00 3.25
778 800 1.468520 CATTGAATTCCTCGCGTTGGT 59.531 47.619 17.35 2.40 0.00 3.67
779 801 1.737236 TCATTGAATTCCTCGCGTTGG 59.263 47.619 5.77 10.41 0.00 3.77
780 802 3.680642 ATCATTGAATTCCTCGCGTTG 57.319 42.857 5.77 0.00 0.00 4.10
781 803 5.811399 TTTATCATTGAATTCCTCGCGTT 57.189 34.783 5.77 0.00 0.00 4.84
782 804 5.811399 TTTTATCATTGAATTCCTCGCGT 57.189 34.783 5.77 0.00 0.00 6.01
784 806 8.807667 ATCATTTTTATCATTGAATTCCTCGC 57.192 30.769 2.27 0.00 0.00 5.03
809 831 3.152261 ACCGTGCGTTCAAATTTTGAA 57.848 38.095 18.29 18.29 46.68 2.69
810 832 2.853731 ACCGTGCGTTCAAATTTTGA 57.146 40.000 7.74 7.74 38.04 2.69
811 833 3.916405 AAACCGTGCGTTCAAATTTTG 57.084 38.095 2.59 2.59 31.78 2.44
812 834 5.341617 TCTTAAACCGTGCGTTCAAATTTT 58.658 33.333 0.00 0.00 31.78 1.82
813 835 4.922719 TCTTAAACCGTGCGTTCAAATTT 58.077 34.783 0.00 0.00 31.78 1.82
814 836 4.555348 TCTTAAACCGTGCGTTCAAATT 57.445 36.364 0.00 0.00 31.78 1.82
815 837 4.555348 TTCTTAAACCGTGCGTTCAAAT 57.445 36.364 0.00 0.00 31.78 2.32
816 838 4.352600 TTTCTTAAACCGTGCGTTCAAA 57.647 36.364 0.00 0.00 31.78 2.69
817 839 4.555348 ATTTCTTAAACCGTGCGTTCAA 57.445 36.364 0.00 0.00 31.78 2.69
818 840 5.670149 TTATTTCTTAAACCGTGCGTTCA 57.330 34.783 0.00 0.00 31.78 3.18
819 841 6.973006 TTTTATTTCTTAAACCGTGCGTTC 57.027 33.333 0.00 0.00 31.78 3.95
820 842 6.919115 ACATTTTATTTCTTAAACCGTGCGTT 59.081 30.769 0.00 0.00 35.70 4.84
821 843 6.440436 ACATTTTATTTCTTAAACCGTGCGT 58.560 32.000 0.00 0.00 29.47 5.24
822 844 6.921332 ACATTTTATTTCTTAAACCGTGCG 57.079 33.333 0.00 0.00 29.47 5.34
823 845 9.364110 CAAAACATTTTATTTCTTAAACCGTGC 57.636 29.630 0.00 0.00 29.47 5.34
839 861 9.541143 AGTGGATTCGTTTATTCAAAACATTTT 57.459 25.926 2.00 0.00 0.00 1.82
840 862 9.541143 AAGTGGATTCGTTTATTCAAAACATTT 57.459 25.926 2.00 0.00 0.00 2.32
841 863 8.977505 CAAGTGGATTCGTTTATTCAAAACATT 58.022 29.630 2.00 0.00 0.00 2.71
842 864 8.141268 ACAAGTGGATTCGTTTATTCAAAACAT 58.859 29.630 2.00 0.00 0.00 2.71
843 865 7.484975 ACAAGTGGATTCGTTTATTCAAAACA 58.515 30.769 2.00 0.00 0.00 2.83
844 866 7.149192 CGACAAGTGGATTCGTTTATTCAAAAC 60.149 37.037 0.00 0.00 0.00 2.43
845 867 6.853872 CGACAAGTGGATTCGTTTATTCAAAA 59.146 34.615 0.00 0.00 0.00 2.44
846 868 6.367421 CGACAAGTGGATTCGTTTATTCAAA 58.633 36.000 0.00 0.00 0.00 2.69
847 869 5.615984 GCGACAAGTGGATTCGTTTATTCAA 60.616 40.000 0.00 0.00 35.17 2.69
848 870 4.142988 GCGACAAGTGGATTCGTTTATTCA 60.143 41.667 0.00 0.00 35.17 2.57
849 871 4.142988 TGCGACAAGTGGATTCGTTTATTC 60.143 41.667 0.00 0.00 35.17 1.75
850 872 3.749088 TGCGACAAGTGGATTCGTTTATT 59.251 39.130 0.00 0.00 35.17 1.40
851 873 3.331150 TGCGACAAGTGGATTCGTTTAT 58.669 40.909 0.00 0.00 35.17 1.40
852 874 2.756829 TGCGACAAGTGGATTCGTTTA 58.243 42.857 0.00 0.00 35.17 2.01
853 875 1.588674 TGCGACAAGTGGATTCGTTT 58.411 45.000 0.00 0.00 35.17 3.60
854 876 1.263217 GTTGCGACAAGTGGATTCGTT 59.737 47.619 0.00 0.00 35.17 3.85
855 877 0.865769 GTTGCGACAAGTGGATTCGT 59.134 50.000 0.00 0.00 35.17 3.85
856 878 1.148310 AGTTGCGACAAGTGGATTCG 58.852 50.000 6.90 0.00 35.82 3.34
857 879 2.350772 CCAAGTTGCGACAAGTGGATTC 60.351 50.000 13.65 0.00 30.29 2.52
858 880 1.608590 CCAAGTTGCGACAAGTGGATT 59.391 47.619 13.65 0.00 30.29 3.01
859 881 1.238439 CCAAGTTGCGACAAGTGGAT 58.762 50.000 13.65 0.00 30.29 3.41
860 882 0.107410 ACCAAGTTGCGACAAGTGGA 60.107 50.000 21.93 0.00 32.12 4.02
861 883 0.738389 AACCAAGTTGCGACAAGTGG 59.262 50.000 16.16 16.16 33.25 4.00
862 884 1.533756 CCAACCAAGTTGCGACAAGTG 60.534 52.381 6.90 1.25 41.62 3.16
863 885 0.738389 CCAACCAAGTTGCGACAAGT 59.262 50.000 6.90 0.00 41.62 3.16
864 886 1.002468 CTCCAACCAAGTTGCGACAAG 60.002 52.381 6.90 0.00 41.62 3.16
865 887 1.021202 CTCCAACCAAGTTGCGACAA 58.979 50.000 6.90 0.00 41.62 3.18
866 888 1.444119 GCTCCAACCAAGTTGCGACA 61.444 55.000 6.90 0.00 41.62 4.35
867 889 1.166531 AGCTCCAACCAAGTTGCGAC 61.167 55.000 0.00 0.00 41.62 5.19
868 890 0.394938 TAGCTCCAACCAAGTTGCGA 59.605 50.000 0.00 1.26 41.62 5.10
869 891 0.517316 GTAGCTCCAACCAAGTTGCG 59.483 55.000 0.00 0.00 41.62 4.85
870 892 0.517316 CGTAGCTCCAACCAAGTTGC 59.483 55.000 0.00 0.00 41.62 4.17
1128 1150 2.732094 GTCGTGGGTTGGTCGACG 60.732 66.667 9.92 0.00 42.84 5.12
1183 1205 1.962807 CTCATTTGGGTGTTGCTTGGA 59.037 47.619 0.00 0.00 0.00 3.53
1227 1250 3.439154 AGAGATTGAGGCTTGAGAGACA 58.561 45.455 0.00 0.00 31.22 3.41
1294 1317 2.797177 AGGGAGAAACTGAGAATGCC 57.203 50.000 0.00 0.00 0.00 4.40
1322 1347 6.971602 TGAGATGAATAGACGATGACCTAAC 58.028 40.000 0.00 0.00 0.00 2.34
1404 1430 4.500545 CCTTGCACATAGCTACCTCTACTG 60.501 50.000 0.00 0.00 45.94 2.74
1530 1585 7.744733 TGGATCACTGGCATTAATCAGTATAA 58.255 34.615 8.93 1.07 41.71 0.98
1902 2068 5.931441 AATGAGATAAATAGCGCCACTTC 57.069 39.130 2.29 0.00 0.00 3.01
1912 2078 9.854668 TCCAAAACGGGATTAATGAGATAAATA 57.145 29.630 0.00 0.00 34.36 1.40
2247 2413 8.687242 TCCGAAGATATTCTATCCACATATGTC 58.313 37.037 5.07 0.00 0.00 3.06
3500 4159 9.793252 AATTTTAAGCAAGTGTATCATGACATC 57.207 29.630 0.00 0.00 0.00 3.06
3556 4216 2.104859 CGGATGGCAGCAGTCACAG 61.105 63.158 4.64 0.00 28.11 3.66
3574 4234 4.578928 TCAGTTTGAGACTAAAGGCAAACC 59.421 41.667 12.12 0.00 46.77 3.27
3609 4269 4.495184 CCACCTGACAACGTAGAACAAAAC 60.495 45.833 0.00 0.00 0.00 2.43
3774 4434 6.041523 ACAAAAATGTAGGTGGCACATAGTTT 59.958 34.615 20.82 16.39 44.52 2.66
4004 4988 6.828785 ACACACATTTCCTGAGAACTTAAGTT 59.171 34.615 20.67 20.67 41.64 2.66
4140 5126 6.131544 ACAAAGAACAAACTGACCATACAC 57.868 37.500 0.00 0.00 0.00 2.90
4332 5326 3.179830 CTGTAGGTGCAGATAACACGAC 58.820 50.000 0.00 0.00 38.98 4.34
4490 5494 6.292703 GGCTCATGCATGAATATTTTGAAAGC 60.293 38.462 28.39 21.67 41.91 3.51
4727 5759 4.154296 GCCTCATCATGCCAGTCC 57.846 61.111 0.00 0.00 0.00 3.85
4824 5875 3.648067 TGGCCATATTTTCAACCACCAAA 59.352 39.130 0.00 0.00 0.00 3.28
4946 6009 8.598075 CGTTAGCGTTGTCCTTTTATTAATACT 58.402 33.333 0.00 0.00 0.00 2.12
5159 6229 9.987272 TCTGTCGAAATATGTTGATATGAGATT 57.013 29.630 0.00 0.00 0.00 2.40
5196 6269 5.801947 GTGCAATAGACATGGCAACTTTTAG 59.198 40.000 0.00 0.00 42.87 1.85
5349 6423 6.032094 GTGCATGTATCATGGCAATATTAGC 58.968 40.000 10.96 0.00 38.10 3.09
5451 6526 9.143631 GCAATTTCAGTTTGTAGAGCATAAAAT 57.856 29.630 0.00 0.00 0.00 1.82
5480 6555 5.770663 TGGTGCTTAAACTAAAGTTGCCATA 59.229 36.000 0.00 0.00 38.44 2.74
5572 6651 6.378564 TCGATGAGATCTTCAAAACTAGACCT 59.621 38.462 0.00 0.00 39.77 3.85
5685 6765 5.049612 CACATGTGAATAGATGACATCAGCC 60.050 44.000 21.64 4.56 32.28 4.85
5710 6790 4.023193 CGCCTTCTTTACCACTCATTTTGT 60.023 41.667 0.00 0.00 0.00 2.83
5849 6933 2.509166 TTCTGGAAGGAGCGAGTAGA 57.491 50.000 0.00 0.00 0.00 2.59
5856 6940 4.036144 GCATCAACTAATTCTGGAAGGAGC 59.964 45.833 0.00 0.00 0.00 4.70
5881 6969 7.754475 CTCTGATCTAGATACATCCGTTTGATG 59.246 40.741 4.89 0.80 44.50 3.07
5882 6970 7.450014 ACTCTGATCTAGATACATCCGTTTGAT 59.550 37.037 4.89 0.00 34.21 2.57
5915 7003 3.623060 ACTCCGCAGCAATAAACACATAG 59.377 43.478 0.00 0.00 0.00 2.23
6074 7997 0.822121 AAGGGACTGTTTGCCGTTCC 60.822 55.000 0.00 0.00 41.84 3.62
6101 8033 1.089920 ATGAGCAGCATTCGTGAACC 58.910 50.000 0.00 0.00 31.73 3.62
6130 8062 4.683334 GCGAGGCGGTTGTGCAAC 62.683 66.667 6.52 6.52 40.45 4.17
6183 8115 3.624410 TCTTGATCTGGATTGCATGTTCG 59.376 43.478 0.00 0.00 0.00 3.95
6223 8155 4.377431 GGAAAGCTCGTGTATCACAAGTTG 60.377 45.833 0.00 0.00 33.40 3.16
6242 8174 7.649533 ATTTCATCTGTATGCTTGATGGAAA 57.350 32.000 12.24 12.05 38.64 3.13
6377 8309 0.463654 ATCCGCAGCCGATAAAAGCA 60.464 50.000 0.00 0.00 36.29 3.91
6533 8468 4.473559 CCAACTCCTCCTTAGGTTTCCATA 59.526 45.833 0.00 0.00 44.09 2.74
6549 8484 2.287977 ACCCTTTTACTGCCAACTCC 57.712 50.000 0.00 0.00 0.00 3.85
6640 8577 2.354821 GGATGGCCTAACAAATGACGTC 59.645 50.000 9.11 9.11 0.00 4.34
6721 8661 4.754114 GCTCTGCTCCTTGTTAATGGATAG 59.246 45.833 0.00 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.