Multiple sequence alignment - TraesCS7A01G234300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G234300 chr7A 100.000 5482 0 0 1 5482 206578134 206583615 0.000000e+00 10124.0
1 TraesCS7A01G234300 chr7A 93.187 910 49 11 1 900 82518335 82517429 0.000000e+00 1325.0
2 TraesCS7A01G234300 chr7A 89.437 426 30 8 3667 4084 79523096 79523514 1.750000e-144 523.0
3 TraesCS7A01G234300 chr7A 92.308 117 5 3 5077 5191 563493225 563493339 4.390000e-36 163.0
4 TraesCS7A01G234300 chr7A 87.395 119 10 4 4798 4913 456205836 456205720 1.240000e-26 132.0
5 TraesCS7A01G234300 chr7D 91.208 1888 103 23 909 2747 197147458 197149331 0.000000e+00 2508.0
6 TraesCS7A01G234300 chr7D 90.366 1910 104 37 2894 4772 197149329 197151189 0.000000e+00 2435.0
7 TraesCS7A01G234300 chr7D 93.455 382 20 2 5079 5460 162147479 162147855 3.710000e-156 562.0
8 TraesCS7A01G234300 chr7D 95.918 49 0 1 5026 5074 162147346 162147392 1.640000e-10 78.7
9 TraesCS7A01G234300 chr7B 90.650 1722 80 34 3025 4704 161446771 161448453 0.000000e+00 2213.0
10 TraesCS7A01G234300 chr7B 91.470 1313 85 18 1720 3008 161445289 161446598 0.000000e+00 1779.0
11 TraesCS7A01G234300 chr7B 92.029 828 35 17 909 1728 161444310 161445114 0.000000e+00 1134.0
12 TraesCS7A01G234300 chr7B 88.006 692 53 14 3405 4084 712751040 712750367 0.000000e+00 791.0
13 TraesCS7A01G234300 chr7B 90.179 112 9 2 4804 4914 424554997 424554887 1.590000e-30 145.0
14 TraesCS7A01G234300 chr7B 84.828 145 18 3 4775 4916 272712822 272712679 5.720000e-30 143.0
15 TraesCS7A01G234300 chr7B 85.294 136 16 4 4792 4924 538115804 538115938 2.660000e-28 137.0
16 TraesCS7A01G234300 chr7B 88.636 88 5 4 4995 5079 272712038 272711953 9.720000e-18 102.0
17 TraesCS7A01G234300 chr1A 93.839 909 45 9 1 900 499738736 499739642 0.000000e+00 1358.0
18 TraesCS7A01G234300 chr1A 93.187 910 45 10 1 900 532324676 532323774 0.000000e+00 1321.0
19 TraesCS7A01G234300 chr1A 92.500 80 6 0 3537 3616 117889625 117889546 1.250000e-21 115.0
20 TraesCS7A01G234300 chr5A 93.729 909 47 7 1 900 384436211 384437118 0.000000e+00 1354.0
21 TraesCS7A01G234300 chr5A 93.960 894 48 5 1 889 555273677 555272785 0.000000e+00 1347.0
22 TraesCS7A01G234300 chr5A 93.645 897 46 9 1 889 477694609 477693716 0.000000e+00 1330.0
23 TraesCS7A01G234300 chr6A 93.481 905 49 9 1 900 455728681 455727782 0.000000e+00 1336.0
24 TraesCS7A01G234300 chr6A 93.282 908 51 7 1 900 562701406 562702311 0.000000e+00 1330.0
25 TraesCS7A01G234300 chr6A 89.906 426 28 8 3667 4084 47593400 47592982 8.080000e-148 534.0
26 TraesCS7A01G234300 chr6A 81.784 269 27 10 5232 5482 599053609 599053873 7.200000e-49 206.0
27 TraesCS7A01G234300 chr3A 92.857 910 53 11 1 900 649737627 649738534 0.000000e+00 1310.0
28 TraesCS7A01G234300 chr3A 92.373 472 21 6 5011 5482 25399206 25398750 0.000000e+00 658.0
29 TraesCS7A01G234300 chr3A 91.892 370 16 4 5113 5482 25383950 25383595 6.340000e-139 505.0
30 TraesCS7A01G234300 chr3A 82.240 366 57 8 4108 4469 337880874 337880513 5.330000e-80 309.0
31 TraesCS7A01G234300 chr3A 82.016 367 61 5 4117 4480 58683899 58683535 1.920000e-79 307.0
32 TraesCS7A01G234300 chr3A 82.969 229 37 2 4121 4348 58071532 58071305 7.200000e-49 206.0
33 TraesCS7A01G234300 chr3A 88.321 137 11 4 4783 4914 25399609 25399473 5.680000e-35 159.0
34 TraesCS7A01G234300 chr3A 85.950 121 8 3 4913 5033 25399415 25399304 2.680000e-23 121.0
35 TraesCS7A01G234300 chr3B 88.728 692 48 13 3405 4084 272586476 272585803 0.000000e+00 819.0
36 TraesCS7A01G234300 chr3B 82.240 366 62 3 4117 4480 73304229 73303865 4.120000e-81 313.0
37 TraesCS7A01G234300 chr3B 82.240 366 57 8 4108 4469 331553374 331553013 5.330000e-80 309.0
38 TraesCS7A01G234300 chr5B 86.705 692 62 15 3405 4084 619682233 619681560 0.000000e+00 741.0
39 TraesCS7A01G234300 chr5B 85.385 130 15 4 4798 4924 24667506 24667634 1.240000e-26 132.0
40 TraesCS7A01G234300 chr2A 93.111 450 23 3 5011 5460 733334124 733334565 0.000000e+00 652.0
41 TraesCS7A01G234300 chr4A 89.744 468 22 4 5011 5460 488541488 488541029 4.760000e-160 575.0
42 TraesCS7A01G234300 chr4A 89.557 316 24 6 3778 4084 669639585 669639900 5.150000e-105 392.0
43 TraesCS7A01G234300 chr4A 90.657 289 19 3 5077 5365 673473387 673473107 1.440000e-100 377.0
44 TraesCS7A01G234300 chr4A 96.923 65 2 0 4966 5030 673473698 673473634 5.810000e-20 110.0
45 TraesCS7A01G234300 chr4A 93.846 65 2 1 5013 5077 673473527 673473465 4.520000e-16 97.1
46 TraesCS7A01G234300 chr3D 82.162 370 56 10 4105 4469 246328515 246328879 5.330000e-80 309.0
47 TraesCS7A01G234300 chr3D 81.793 368 60 5 4117 4480 46964240 46963876 8.920000e-78 302.0
48 TraesCS7A01G234300 chr3D 88.321 137 12 3 4784 4916 268580761 268580897 1.580000e-35 161.0
49 TraesCS7A01G234300 chr5D 92.398 171 10 1 5290 5460 230363587 230363754 1.970000e-59 241.0
50 TraesCS7A01G234300 chr5D 85.780 218 23 4 5077 5294 230163720 230163929 1.990000e-54 224.0
51 TraesCS7A01G234300 chr6B 90.698 129 9 1 5242 5370 688304151 688304276 9.440000e-38 169.0
52 TraesCS7A01G234300 chr1B 96.739 92 3 0 3993 4084 51291642 51291733 2.640000e-33 154.0
53 TraesCS7A01G234300 chr1B 91.111 90 4 3 4945 5033 137437082 137436996 9.650000e-23 119.0
54 TraesCS7A01G234300 chr1B 92.683 82 6 0 3537 3618 170515126 170515045 9.650000e-23 119.0
55 TraesCS7A01G234300 chr4D 86.777 121 11 4 4798 4914 65952476 65952595 4.460000e-26 130.0
56 TraesCS7A01G234300 chr4B 84.848 132 16 3 4799 4927 17929274 17929144 4.460000e-26 130.0
57 TraesCS7A01G234300 chr1D 92.683 82 6 0 3535 3616 111514560 111514479 9.650000e-23 119.0
58 TraesCS7A01G234300 chrUn 84.426 122 16 2 4798 4916 83927889 83927768 3.470000e-22 117.0
59 TraesCS7A01G234300 chrUn 88.636 88 5 4 4995 5079 83927487 83927402 9.720000e-18 102.0
60 TraesCS7A01G234300 chr2B 87.500 88 6 4 4995 5079 753915718 753915633 4.520000e-16 97.1
61 TraesCS7A01G234300 chr6D 93.750 64 2 1 5016 5079 362781032 362781093 1.630000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G234300 chr7A 206578134 206583615 5481 False 10124.000000 10124 100.000000 1 5482 1 chr7A.!!$F2 5481
1 TraesCS7A01G234300 chr7A 82517429 82518335 906 True 1325.000000 1325 93.187000 1 900 1 chr7A.!!$R1 899
2 TraesCS7A01G234300 chr7D 197147458 197151189 3731 False 2471.500000 2508 90.787000 909 4772 2 chr7D.!!$F2 3863
3 TraesCS7A01G234300 chr7D 162147346 162147855 509 False 320.350000 562 94.686500 5026 5460 2 chr7D.!!$F1 434
4 TraesCS7A01G234300 chr7B 161444310 161448453 4143 False 1708.666667 2213 91.383000 909 4704 3 chr7B.!!$F2 3795
5 TraesCS7A01G234300 chr7B 712750367 712751040 673 True 791.000000 791 88.006000 3405 4084 1 chr7B.!!$R2 679
6 TraesCS7A01G234300 chr1A 499738736 499739642 906 False 1358.000000 1358 93.839000 1 900 1 chr1A.!!$F1 899
7 TraesCS7A01G234300 chr1A 532323774 532324676 902 True 1321.000000 1321 93.187000 1 900 1 chr1A.!!$R2 899
8 TraesCS7A01G234300 chr5A 384436211 384437118 907 False 1354.000000 1354 93.729000 1 900 1 chr5A.!!$F1 899
9 TraesCS7A01G234300 chr5A 555272785 555273677 892 True 1347.000000 1347 93.960000 1 889 1 chr5A.!!$R2 888
10 TraesCS7A01G234300 chr5A 477693716 477694609 893 True 1330.000000 1330 93.645000 1 889 1 chr5A.!!$R1 888
11 TraesCS7A01G234300 chr6A 455727782 455728681 899 True 1336.000000 1336 93.481000 1 900 1 chr6A.!!$R2 899
12 TraesCS7A01G234300 chr6A 562701406 562702311 905 False 1330.000000 1330 93.282000 1 900 1 chr6A.!!$F1 899
13 TraesCS7A01G234300 chr3A 649737627 649738534 907 False 1310.000000 1310 92.857000 1 900 1 chr3A.!!$F1 899
14 TraesCS7A01G234300 chr3A 25398750 25399609 859 True 312.666667 658 88.881333 4783 5482 3 chr3A.!!$R5 699
15 TraesCS7A01G234300 chr3B 272585803 272586476 673 True 819.000000 819 88.728000 3405 4084 1 chr3B.!!$R2 679
16 TraesCS7A01G234300 chr5B 619681560 619682233 673 True 741.000000 741 86.705000 3405 4084 1 chr5B.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 908 0.035439 TTTTAAGCGCCCCTGAGGAG 60.035 55.0 2.29 0.00 38.24 3.69 F
904 917 0.106819 CCCCTGAGGAGCCAAAGATG 60.107 60.0 0.00 0.00 38.24 2.90 F
1339 1355 0.395311 TAATCGACTGCGTCCCCTCT 60.395 55.0 0.00 0.00 38.98 3.69 F
2601 2851 0.025513 GCGCATCTAGTTGTGCTTCG 59.974 55.0 25.22 11.26 46.89 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2152 0.107268 TGCTGTCATCATAGGCGCAT 59.893 50.0 10.83 3.98 0.0 4.73 R
1913 2154 0.305922 GTTGCTGTCATCATAGGCGC 59.694 55.0 0.00 0.00 0.0 6.53 R
3227 3658 0.250295 TGGTTGAGTCAAAGAGCCCG 60.250 55.0 7.25 0.00 0.0 6.13 R
4518 5017 0.108424 AAAGCAAGCAAACAACGCCA 60.108 45.0 0.00 0.00 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
300 303 4.388499 GCTCGCCCCGGTGAAGAA 62.388 66.667 0.00 0.00 33.98 2.52
304 307 2.754375 GCCCCGGTGAAGAAGGAA 59.246 61.111 0.00 0.00 0.00 3.36
309 312 3.982829 GGTGAAGAAGGAACCGGC 58.017 61.111 0.00 0.00 0.00 6.13
328 334 2.358247 GCGCCGGTGAAGAAGGAA 60.358 61.111 21.76 0.00 0.00 3.36
335 341 1.072505 GTGAAGAAGGAACCGGCCA 59.927 57.895 0.00 0.00 0.00 5.36
500 506 2.508439 GCGACGAAGGCGGAATCA 60.508 61.111 0.00 0.00 43.17 2.57
717 727 1.169661 AACTTCGCCGAAATGTGCCA 61.170 50.000 0.00 0.00 0.00 4.92
770 780 0.734942 TTAAGCCGAACTTCGCCGAG 60.735 55.000 5.61 0.00 39.97 4.63
777 787 1.458064 CGAACTTCGCCGAGCTTTTTA 59.542 47.619 0.00 0.00 31.14 1.52
798 809 9.760077 TTTTTATTATTTTAAAACGTGCCTGGA 57.240 25.926 1.97 0.00 32.33 3.86
865 878 3.782656 ATTTTTACACCGACTCACCCT 57.217 42.857 0.00 0.00 0.00 4.34
874 887 1.235281 CGACTCACCCTCAGACGACA 61.235 60.000 0.00 0.00 31.81 4.35
881 894 4.963373 TCACCCTCAGACGACAATTTTAA 58.037 39.130 0.00 0.00 0.00 1.52
889 902 0.808755 CGACAATTTTAAGCGCCCCT 59.191 50.000 2.29 0.00 0.00 4.79
890 903 1.467374 CGACAATTTTAAGCGCCCCTG 60.467 52.381 2.29 0.00 0.00 4.45
891 904 1.816224 GACAATTTTAAGCGCCCCTGA 59.184 47.619 2.29 0.00 0.00 3.86
892 905 1.818674 ACAATTTTAAGCGCCCCTGAG 59.181 47.619 2.29 0.00 0.00 3.35
893 906 1.134946 CAATTTTAAGCGCCCCTGAGG 59.865 52.381 2.29 0.00 39.47 3.86
894 907 0.623723 ATTTTAAGCGCCCCTGAGGA 59.376 50.000 2.29 0.00 38.24 3.71
895 908 0.035439 TTTTAAGCGCCCCTGAGGAG 60.035 55.000 2.29 0.00 38.24 3.69
900 913 4.033776 CGCCCCTGAGGAGCCAAA 62.034 66.667 0.00 0.00 38.24 3.28
901 914 2.044551 GCCCCTGAGGAGCCAAAG 60.045 66.667 0.00 0.00 38.24 2.77
902 915 2.606587 GCCCCTGAGGAGCCAAAGA 61.607 63.158 0.00 0.00 38.24 2.52
903 916 1.931007 GCCCCTGAGGAGCCAAAGAT 61.931 60.000 0.00 0.00 38.24 2.40
904 917 0.106819 CCCCTGAGGAGCCAAAGATG 60.107 60.000 0.00 0.00 38.24 2.90
905 918 0.106819 CCCTGAGGAGCCAAAGATGG 60.107 60.000 0.00 0.00 42.62 3.51
1209 1222 2.795231 CCATCAAGGTCACCATCTGT 57.205 50.000 0.00 0.00 0.00 3.41
1210 1223 3.912496 CCATCAAGGTCACCATCTGTA 57.088 47.619 0.00 0.00 0.00 2.74
1265 1281 5.182760 GCATTCTTCTCTCCATCTGTTTGTT 59.817 40.000 0.00 0.00 0.00 2.83
1266 1282 6.294397 GCATTCTTCTCTCCATCTGTTTGTTT 60.294 38.462 0.00 0.00 0.00 2.83
1267 1283 6.624352 TTCTTCTCTCCATCTGTTTGTTTG 57.376 37.500 0.00 0.00 0.00 2.93
1269 1285 5.528690 TCTTCTCTCCATCTGTTTGTTTGTG 59.471 40.000 0.00 0.00 0.00 3.33
1270 1286 4.136796 TCTCTCCATCTGTTTGTTTGTGG 58.863 43.478 0.00 0.00 0.00 4.17
1271 1287 3.885297 CTCTCCATCTGTTTGTTTGTGGT 59.115 43.478 0.00 0.00 0.00 4.16
1273 1289 5.441500 TCTCCATCTGTTTGTTTGTGGTTA 58.558 37.500 0.00 0.00 0.00 2.85
1274 1290 5.298276 TCTCCATCTGTTTGTTTGTGGTTAC 59.702 40.000 0.00 0.00 0.00 2.50
1276 1292 5.419155 TCCATCTGTTTGTTTGTGGTTACAA 59.581 36.000 0.00 0.00 44.66 2.41
1277 1293 6.097554 TCCATCTGTTTGTTTGTGGTTACAAT 59.902 34.615 0.00 0.00 45.56 2.71
1278 1294 6.200665 CCATCTGTTTGTTTGTGGTTACAATG 59.799 38.462 0.00 0.00 45.56 2.82
1279 1295 5.655488 TCTGTTTGTTTGTGGTTACAATGG 58.345 37.500 0.00 0.00 45.56 3.16
1280 1296 5.419155 TCTGTTTGTTTGTGGTTACAATGGA 59.581 36.000 0.00 0.00 45.56 3.41
1291 1307 4.040217 TGGTTACAATGGAAATGCTTGCTT 59.960 37.500 0.00 0.00 0.00 3.91
1292 1308 4.996758 GGTTACAATGGAAATGCTTGCTTT 59.003 37.500 0.00 0.00 0.00 3.51
1293 1309 6.162777 GGTTACAATGGAAATGCTTGCTTTA 58.837 36.000 0.00 0.00 0.00 1.85
1333 1349 2.927477 TGGTGATTTAATCGACTGCGTC 59.073 45.455 0.23 0.00 38.98 5.19
1339 1355 0.395311 TAATCGACTGCGTCCCCTCT 60.395 55.000 0.00 0.00 38.98 3.69
1345 1361 2.680352 TGCGTCCCCTCTCACCTC 60.680 66.667 0.00 0.00 0.00 3.85
1407 1423 6.190587 AGCCTCTGGTAATTAAAAGCATCTT 58.809 36.000 0.00 0.00 0.00 2.40
1408 1424 6.319911 AGCCTCTGGTAATTAAAAGCATCTTC 59.680 38.462 0.00 0.00 0.00 2.87
1411 1427 8.743714 CCTCTGGTAATTAAAAGCATCTTCTTT 58.256 33.333 0.00 0.00 37.86 2.52
1412 1428 9.565213 CTCTGGTAATTAAAAGCATCTTCTTTG 57.435 33.333 0.00 0.00 36.49 2.77
1414 1430 9.132521 CTGGTAATTAAAAGCATCTTCTTTGTG 57.867 33.333 0.00 0.00 36.49 3.33
1416 1432 9.346725 GGTAATTAAAAGCATCTTCTTTGTGAG 57.653 33.333 0.00 0.00 36.49 3.51
1427 1450 1.330521 TCTTTGTGAGAAGCGTTGTGC 59.669 47.619 0.00 0.00 46.98 4.57
1438 1471 1.581954 CGTTGTGCCTCTCTCTCGT 59.418 57.895 0.00 0.00 0.00 4.18
1472 1510 5.006153 TGCTAAGCTAGTTCGATGCTTAA 57.994 39.130 17.15 6.99 45.02 1.85
1473 1511 4.804139 TGCTAAGCTAGTTCGATGCTTAAC 59.196 41.667 17.15 14.70 45.02 2.01
1474 1512 5.044558 GCTAAGCTAGTTCGATGCTTAACT 58.955 41.667 17.15 7.12 45.02 2.24
1475 1513 5.520649 GCTAAGCTAGTTCGATGCTTAACTT 59.479 40.000 17.15 11.21 45.02 2.66
1476 1514 5.786401 AAGCTAGTTCGATGCTTAACTTG 57.214 39.130 11.79 2.68 44.04 3.16
1523 1561 3.073062 AGAACTACAACTCCACCATTGCT 59.927 43.478 0.00 0.00 0.00 3.91
1531 1569 3.818787 CACCATTGCTGGAGCGGC 61.819 66.667 0.00 0.00 46.37 6.53
1731 1952 2.422127 GCACACTCTACTGTCTCCTCTC 59.578 54.545 0.00 0.00 0.00 3.20
1736 1957 3.050089 CTCTACTGTCTCCTCTCCCCTA 58.950 54.545 0.00 0.00 0.00 3.53
1781 2002 6.145535 CACTGAAAGAAATAACTCTTGCACC 58.854 40.000 0.00 0.00 36.26 5.01
1915 2156 9.988350 AAAATTGTCTGTAAATAGTAGAATGCG 57.012 29.630 0.00 0.00 0.00 4.73
1954 2195 0.602638 TGCACTGTTACGCCAAGGAG 60.603 55.000 0.00 0.00 0.00 3.69
2084 2333 4.321304 GGAAAAGCTACAAAAGAGAAGCCC 60.321 45.833 0.00 0.00 35.54 5.19
2119 2368 8.133627 CAGGAAAAGGATAATCACAGCAATTAG 58.866 37.037 0.00 0.00 0.00 1.73
2125 2374 6.989169 AGGATAATCACAGCAATTAGACAGTC 59.011 38.462 0.00 0.00 0.00 3.51
2129 2378 4.309933 TCACAGCAATTAGACAGTCACTG 58.690 43.478 2.22 2.22 37.52 3.66
2225 2474 4.460382 CACTGGTTGCCTTTGTTCATATCT 59.540 41.667 0.00 0.00 0.00 1.98
2273 2522 1.912371 GCAACTAGTGCGGCCAGTTC 61.912 60.000 2.24 0.00 45.10 3.01
2453 2702 8.718102 TGGTAATTTAACTAAGATCTCTGCAC 57.282 34.615 0.00 0.00 0.00 4.57
2511 2760 9.316730 TCTCAAAAATCTGAATTTGGTTCAAAG 57.683 29.630 15.09 7.66 45.74 2.77
2524 2773 9.555411 AATTTGGTTCAAAGGTAGGGTTATAAT 57.445 29.630 0.00 0.00 36.76 1.28
2562 2811 1.000233 ATTCCAAGGGCCAATGCGA 60.000 52.632 6.18 1.56 38.85 5.10
2565 2814 0.179020 TCCAAGGGCCAATGCGATAG 60.179 55.000 6.18 0.00 38.85 2.08
2583 2832 0.036022 AGCTCAGTTCCCTGTTCTGC 59.964 55.000 0.00 0.00 39.82 4.26
2585 2834 1.294659 CTCAGTTCCCTGTTCTGCGC 61.295 60.000 0.00 0.00 39.82 6.09
2601 2851 0.025513 GCGCATCTAGTTGTGCTTCG 59.974 55.000 25.22 11.26 46.89 3.79
2602 2852 0.647410 CGCATCTAGTTGTGCTTCGG 59.353 55.000 12.96 0.00 39.16 4.30
2614 2864 1.243342 TGCTTCGGTTGGGCATCTTG 61.243 55.000 0.00 0.00 0.00 3.02
2620 2870 1.673168 GGTTGGGCATCTTGAGCTAG 58.327 55.000 0.00 0.00 0.00 3.42
2632 2882 7.333174 GGCATCTTGAGCTAGAATTAGGTATTC 59.667 40.741 0.00 0.00 42.51 1.75
2675 2925 8.470002 GCCCTCTGTGATTAAAATCAAAATAGT 58.530 33.333 6.95 0.00 46.13 2.12
2712 2962 0.038251 TGTCTGATGTCGGCACACTC 60.038 55.000 0.00 0.00 34.48 3.51
2724 2974 3.112075 ACACTCGGCGACATTGCG 61.112 61.111 4.99 0.00 35.06 4.85
2725 2975 3.112075 CACTCGGCGACATTGCGT 61.112 61.111 4.99 0.00 35.06 5.24
2750 3000 4.606210 AGAACCAATACCGCCCTTATTTT 58.394 39.130 0.00 0.00 0.00 1.82
2767 3017 1.176527 TTTGTACTACCTCCGTCCGG 58.823 55.000 0.00 0.00 0.00 5.14
2775 3025 0.828677 ACCTCCGTCCGGAAATAAGG 59.171 55.000 5.23 13.65 44.66 2.69
2778 3028 0.826062 TCCGTCCGGAAATAAGGGAC 59.174 55.000 5.23 0.00 45.34 4.46
2782 3032 0.538118 TCCGGAAATAAGGGACGTGG 59.462 55.000 0.00 0.00 0.00 4.94
2785 3035 2.004733 CGGAAATAAGGGACGTGGTTC 58.995 52.381 0.00 0.00 0.00 3.62
2786 3036 2.354403 CGGAAATAAGGGACGTGGTTCT 60.354 50.000 0.00 0.00 0.00 3.01
2787 3037 3.119029 CGGAAATAAGGGACGTGGTTCTA 60.119 47.826 0.00 0.00 0.00 2.10
2788 3038 4.439968 GGAAATAAGGGACGTGGTTCTAG 58.560 47.826 0.00 0.00 0.00 2.43
2791 3041 6.183360 GGAAATAAGGGACGTGGTTCTAGTAT 60.183 42.308 0.00 0.00 0.00 2.12
2792 3042 6.803366 AATAAGGGACGTGGTTCTAGTATT 57.197 37.500 0.00 0.00 0.00 1.89
2793 3043 6.803366 ATAAGGGACGTGGTTCTAGTATTT 57.197 37.500 0.00 0.00 0.00 1.40
2794 3044 4.732672 AGGGACGTGGTTCTAGTATTTC 57.267 45.455 0.00 0.00 0.00 2.17
2796 3046 3.129287 GGGACGTGGTTCTAGTATTTCGA 59.871 47.826 0.00 0.00 0.00 3.71
2797 3047 4.380867 GGGACGTGGTTCTAGTATTTCGAA 60.381 45.833 0.00 0.00 0.00 3.71
2818 3084 5.406175 CGAAACGGAGTATTTGTAAACCAGA 59.594 40.000 0.00 0.00 45.00 3.86
2834 3100 9.621629 TGTAAACCAGATAATTTGTGGTATAGG 57.378 33.333 8.98 0.00 44.07 2.57
2869 3135 4.751600 GGCAATATATTGGGCTTTTGAAGC 59.248 41.667 23.57 4.13 44.44 3.86
2871 3137 5.964539 GCAATATATTGGGCTTTTGAAGCGT 60.965 40.000 23.57 0.00 45.24 5.07
2881 3147 4.216731 GCTTTTGAAGCGTAGTGTTAACC 58.783 43.478 2.48 0.00 45.74 2.85
2884 3150 5.662211 TTTGAAGCGTAGTGTTAACCTTC 57.338 39.130 2.48 7.93 0.00 3.46
2890 3156 3.618019 GCGTAGTGTTAACCTTCCATCCA 60.618 47.826 2.48 0.00 0.00 3.41
2976 3243 6.931838 CCACTAGTGGTAAACATGAAGACTA 58.068 40.000 30.57 0.00 45.53 2.59
2982 3249 8.324163 AGTGGTAAACATGAAGACTAATGTTC 57.676 34.615 13.87 5.85 44.24 3.18
2989 3256 9.778741 AAACATGAAGACTAATGTTCTGTTAGA 57.221 29.630 13.87 0.00 44.24 2.10
3002 3269 4.623932 TCTGTTAGAAAGCTGTGGACAT 57.376 40.909 0.00 0.00 0.00 3.06
3015 3445 4.279169 GCTGTGGACATACATAAATGCCAT 59.721 41.667 0.00 0.00 36.29 4.40
3035 3465 6.774170 TGCCATGCATAAGACATAAGATTCTT 59.226 34.615 0.00 4.03 33.16 2.52
3202 3632 8.480501 AGCTTCATTAACCTAATCAAAATGCAT 58.519 29.630 0.00 0.00 0.00 3.96
3227 3658 6.128553 TGAGCAAATAACTCGTCTTGAATGAC 60.129 38.462 0.00 0.00 36.94 3.06
3304 3735 3.791122 GCATTCGAGCAGCGTAGTTACTA 60.791 47.826 0.00 0.00 41.80 1.82
3305 3736 4.537965 CATTCGAGCAGCGTAGTTACTAT 58.462 43.478 0.00 0.00 41.80 2.12
3364 3817 9.176460 CTTACCATACCTAGCTAGTTACTATCC 57.824 40.741 19.31 0.00 0.00 2.59
3428 3891 5.584253 TGGAGTCTACTGCTCTTAACATC 57.416 43.478 3.23 0.00 35.18 3.06
3484 3947 7.434602 GGGTACGTGAATTCAGAGAAATACTAC 59.565 40.741 8.80 4.01 0.00 2.73
3535 3998 1.912043 CCCAGGATAGATGACCCATCC 59.088 57.143 3.55 0.00 41.36 3.51
3624 4087 1.632920 TGGATGGCAGGTACATGAACA 59.367 47.619 12.53 9.66 0.00 3.18
3625 4088 2.292267 GGATGGCAGGTACATGAACAG 58.708 52.381 12.53 0.00 0.00 3.16
3626 4089 2.092968 GGATGGCAGGTACATGAACAGA 60.093 50.000 12.53 0.00 0.00 3.41
3627 4090 3.609853 GATGGCAGGTACATGAACAGAA 58.390 45.455 12.53 0.00 0.00 3.02
3628 4091 3.719268 TGGCAGGTACATGAACAGAAT 57.281 42.857 12.53 0.00 0.00 2.40
3629 4092 3.346315 TGGCAGGTACATGAACAGAATG 58.654 45.455 12.53 0.00 46.00 2.67
3630 4093 3.008923 TGGCAGGTACATGAACAGAATGA 59.991 43.478 12.53 0.00 39.69 2.57
3631 4094 4.202441 GGCAGGTACATGAACAGAATGAT 58.798 43.478 12.53 0.00 39.69 2.45
3632 4095 4.036027 GGCAGGTACATGAACAGAATGATG 59.964 45.833 12.53 0.00 39.69 3.07
3633 4096 4.497006 GCAGGTACATGAACAGAATGATGC 60.497 45.833 12.53 0.00 39.69 3.91
3708 4177 5.776716 ACATGAAAGATGAAACCCTTGTCAT 59.223 36.000 0.00 0.00 37.19 3.06
3752 4221 2.746362 GCTGTATGGAGATAGCAATGCC 59.254 50.000 0.00 0.00 36.24 4.40
3811 4281 4.241681 TGCACAAACAAAAACTTCACCTC 58.758 39.130 0.00 0.00 0.00 3.85
3819 4289 3.297134 AAAACTTCACCTCTTGCCTGA 57.703 42.857 0.00 0.00 0.00 3.86
3821 4291 3.515602 AACTTCACCTCTTGCCTGATT 57.484 42.857 0.00 0.00 0.00 2.57
3822 4292 4.640771 AACTTCACCTCTTGCCTGATTA 57.359 40.909 0.00 0.00 0.00 1.75
3824 4294 3.584848 ACTTCACCTCTTGCCTGATTAGT 59.415 43.478 0.00 0.00 0.00 2.24
3825 4295 3.616956 TCACCTCTTGCCTGATTAGTG 57.383 47.619 0.00 0.00 0.00 2.74
3826 4296 2.237143 TCACCTCTTGCCTGATTAGTGG 59.763 50.000 0.00 0.00 0.00 4.00
3834 4312 1.656652 CCTGATTAGTGGCCGAGTTG 58.343 55.000 0.00 0.00 0.00 3.16
3927 4405 2.338500 GTCCAGACGACCAACAAGATC 58.662 52.381 0.00 0.00 35.23 2.75
3931 4409 1.683790 GACGACCAACAAGATCGCCG 61.684 60.000 0.00 0.00 39.47 6.46
4018 4496 7.344093 TGATATGGAAGGTAAATGCCATTTCAA 59.656 33.333 5.82 0.00 42.11 2.69
4035 4520 7.095102 GCCATTTCAAAATCACTGCAGTAATTT 60.095 33.333 20.30 20.30 27.44 1.82
4036 4521 8.776470 CCATTTCAAAATCACTGCAGTAATTTT 58.224 29.630 27.89 27.89 36.56 1.82
4037 4522 9.801714 CATTTCAAAATCACTGCAGTAATTTTC 57.198 29.630 29.84 0.00 34.55 2.29
4038 4523 8.939201 TTTCAAAATCACTGCAGTAATTTTCA 57.061 26.923 29.84 20.05 34.55 2.69
4039 4524 9.545105 TTTCAAAATCACTGCAGTAATTTTCAT 57.455 25.926 29.84 13.49 34.55 2.57
4040 4525 9.545105 TTCAAAATCACTGCAGTAATTTTCATT 57.455 25.926 29.84 13.17 34.55 2.57
4041 4526 9.545105 TCAAAATCACTGCAGTAATTTTCATTT 57.455 25.926 29.84 12.84 34.55 2.32
4084 4583 1.864711 GCATGGCAAATGCATGATGAC 59.135 47.619 16.35 12.99 44.00 3.06
4086 4585 1.461559 TGGCAAATGCATGATGACGA 58.538 45.000 15.02 2.80 44.36 4.20
4098 4597 2.698803 TGATGACGAAATGGTCTGGTG 58.301 47.619 0.00 0.00 37.81 4.17
4482 4981 0.521735 GAACGTGAAATGCCCCTGAC 59.478 55.000 0.00 0.00 0.00 3.51
4501 5000 1.282157 ACCCCTGACATTGTTAGGCTC 59.718 52.381 19.57 0.00 37.89 4.70
4509 5008 2.816087 ACATTGTTAGGCTCTTGCTGTG 59.184 45.455 0.00 0.00 39.59 3.66
4511 5010 2.638480 TGTTAGGCTCTTGCTGTGTT 57.362 45.000 0.00 0.00 39.59 3.32
4512 5011 2.221169 TGTTAGGCTCTTGCTGTGTTG 58.779 47.619 0.00 0.00 39.59 3.33
4515 5014 1.767759 AGGCTCTTGCTGTGTTGTTT 58.232 45.000 0.00 0.00 39.59 2.83
4516 5015 1.678101 AGGCTCTTGCTGTGTTGTTTC 59.322 47.619 0.00 0.00 39.59 2.78
4518 5017 2.099756 GGCTCTTGCTGTGTTGTTTCTT 59.900 45.455 0.00 0.00 39.59 2.52
4520 5019 3.699067 CTCTTGCTGTGTTGTTTCTTGG 58.301 45.455 0.00 0.00 0.00 3.61
4521 5020 2.159254 TCTTGCTGTGTTGTTTCTTGGC 60.159 45.455 0.00 0.00 0.00 4.52
4522 5021 0.100325 TGCTGTGTTGTTTCTTGGCG 59.900 50.000 0.00 0.00 0.00 5.69
4530 5029 1.634702 TGTTTCTTGGCGTTGTTTGC 58.365 45.000 0.00 0.00 0.00 3.68
4534 5033 0.527385 TCTTGGCGTTGTTTGCTTGC 60.527 50.000 0.00 0.00 0.00 4.01
4560 5059 4.582701 TTGTCACCAAATCTTTTGCGAT 57.417 36.364 0.00 0.00 0.00 4.58
4565 5064 6.092122 TGTCACCAAATCTTTTGCGATAGTAG 59.908 38.462 0.00 0.00 39.35 2.57
4567 5066 6.312918 TCACCAAATCTTTTGCGATAGTAGTC 59.687 38.462 0.00 0.00 39.35 2.59
4568 5067 5.585047 ACCAAATCTTTTGCGATAGTAGTCC 59.415 40.000 0.00 0.00 39.35 3.85
4569 5068 5.276868 CCAAATCTTTTGCGATAGTAGTCCG 60.277 44.000 0.00 0.00 39.35 4.79
4570 5069 4.650754 ATCTTTTGCGATAGTAGTCCGT 57.349 40.909 0.00 0.00 39.35 4.69
4571 5070 5.762825 ATCTTTTGCGATAGTAGTCCGTA 57.237 39.130 0.00 0.00 39.35 4.02
4572 5071 4.913376 TCTTTTGCGATAGTAGTCCGTAC 58.087 43.478 0.00 0.00 39.35 3.67
4573 5072 3.698029 TTTGCGATAGTAGTCCGTACC 57.302 47.619 0.00 0.00 39.35 3.34
4574 5073 1.597742 TGCGATAGTAGTCCGTACCC 58.402 55.000 0.00 0.00 39.35 3.69
4585 5084 2.103601 AGTCCGTACCCCCATTATTTCG 59.896 50.000 0.00 0.00 0.00 3.46
4586 5085 2.102925 GTCCGTACCCCCATTATTTCGA 59.897 50.000 0.00 0.00 0.00 3.71
4587 5086 2.102925 TCCGTACCCCCATTATTTCGAC 59.897 50.000 0.00 0.00 0.00 4.20
4611 5110 8.140112 ACTAGGATATCATTGTTAGGCTTAGG 57.860 38.462 4.83 0.00 0.00 2.69
4612 5111 7.735321 ACTAGGATATCATTGTTAGGCTTAGGT 59.265 37.037 4.83 0.00 0.00 3.08
4613 5112 7.010339 AGGATATCATTGTTAGGCTTAGGTC 57.990 40.000 4.83 0.00 0.00 3.85
4614 5113 6.789959 AGGATATCATTGTTAGGCTTAGGTCT 59.210 38.462 4.83 0.00 0.00 3.85
4629 5130 5.606505 CTTAGGTCTTTTAGCTCCTGGATC 58.393 45.833 0.00 0.00 37.13 3.36
4639 5140 1.405256 GCTCCTGGATCCATATGAGCG 60.405 57.143 29.87 14.16 34.66 5.03
4679 5184 9.349713 AGGAATCTGTAAATTTTGACAAGTACA 57.650 29.630 0.00 0.00 0.00 2.90
4704 5209 1.401018 GGCGTGTGCATTCTGTTTACC 60.401 52.381 0.00 0.00 45.35 2.85
4706 5211 1.795872 CGTGTGCATTCTGTTTACCGA 59.204 47.619 0.00 0.00 0.00 4.69
4708 5213 2.159627 GTGTGCATTCTGTTTACCGAGG 59.840 50.000 0.00 0.00 0.00 4.63
4724 5229 2.550208 CCGAGGAAGTAGCACCAGTTTT 60.550 50.000 0.00 0.00 0.00 2.43
4732 5237 6.484308 GGAAGTAGCACCAGTTTTTACTGTAA 59.516 38.462 0.00 0.00 36.06 2.41
4733 5238 7.012610 GGAAGTAGCACCAGTTTTTACTGTAAA 59.987 37.037 8.84 8.84 36.06 2.01
4734 5239 7.868906 AGTAGCACCAGTTTTTACTGTAAAA 57.131 32.000 18.94 18.94 36.06 1.52
4735 5240 8.459911 AGTAGCACCAGTTTTTACTGTAAAAT 57.540 30.769 22.27 9.32 37.48 1.82
4750 5255 7.801716 ACTGTAAAATGCTTCAGTGTTTCTA 57.198 32.000 0.00 0.00 39.27 2.10
4752 5257 7.282224 ACTGTAAAATGCTTCAGTGTTTCTACA 59.718 33.333 0.00 0.00 39.27 2.74
4757 5262 7.602517 AATGCTTCAGTGTTTCTACAGATAC 57.397 36.000 0.00 0.00 34.24 2.24
4758 5263 6.096673 TGCTTCAGTGTTTCTACAGATACA 57.903 37.500 0.00 0.00 34.24 2.29
4772 5277 7.436933 TCTACAGATACAATCGCATTTCATCT 58.563 34.615 0.00 0.00 0.00 2.90
4773 5278 8.576442 TCTACAGATACAATCGCATTTCATCTA 58.424 33.333 0.00 0.00 0.00 1.98
4774 5279 7.413475 ACAGATACAATCGCATTTCATCTAC 57.587 36.000 0.00 0.00 0.00 2.59
4775 5280 7.212976 ACAGATACAATCGCATTTCATCTACT 58.787 34.615 0.00 0.00 0.00 2.57
4776 5281 8.360390 ACAGATACAATCGCATTTCATCTACTA 58.640 33.333 0.00 0.00 0.00 1.82
4777 5282 9.363763 CAGATACAATCGCATTTCATCTACTAT 57.636 33.333 0.00 0.00 0.00 2.12
4778 5283 9.579768 AGATACAATCGCATTTCATCTACTATC 57.420 33.333 0.00 0.00 0.00 2.08
4779 5284 9.579768 GATACAATCGCATTTCATCTACTATCT 57.420 33.333 0.00 0.00 0.00 1.98
4781 5286 8.749841 ACAATCGCATTTCATCTACTATCTAC 57.250 34.615 0.00 0.00 0.00 2.59
4782 5287 8.580720 ACAATCGCATTTCATCTACTATCTACT 58.419 33.333 0.00 0.00 0.00 2.57
4786 5291 9.674068 TCGCATTTCATCTACTATCTACTATCT 57.326 33.333 0.00 0.00 0.00 1.98
4841 5349 4.280929 GGGGGCAGATCCAAACAATTATAC 59.719 45.833 0.00 0.00 36.21 1.47
4843 5351 4.280929 GGGCAGATCCAAACAATTATACCC 59.719 45.833 0.00 0.00 36.21 3.69
4859 5367 8.846211 CAATTATACCCGTCCATCTACAAAATT 58.154 33.333 0.00 0.00 0.00 1.82
4918 5485 1.135689 CACGCAATTAAGCCACCTCAC 60.136 52.381 0.00 0.00 0.00 3.51
4920 5487 0.179163 GCAATTAAGCCACCTCACGC 60.179 55.000 0.00 0.00 0.00 5.34
4939 5506 3.636231 CCTGTGCCGTTCCTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
4940 5507 2.358737 CTGTGCCGTTCCTCCCAC 60.359 66.667 0.00 0.00 0.00 4.61
4941 5508 2.847234 TGTGCCGTTCCTCCCACT 60.847 61.111 0.00 0.00 0.00 4.00
4942 5509 2.047179 GTGCCGTTCCTCCCACTC 60.047 66.667 0.00 0.00 0.00 3.51
4943 5510 3.319198 TGCCGTTCCTCCCACTCC 61.319 66.667 0.00 0.00 0.00 3.85
4944 5511 4.097361 GCCGTTCCTCCCACTCCC 62.097 72.222 0.00 0.00 0.00 4.30
4945 5512 2.606519 CCGTTCCTCCCACTCCCA 60.607 66.667 0.00 0.00 0.00 4.37
4976 5543 4.821589 CGTTCCTCCTCCCGCAGC 62.822 72.222 0.00 0.00 0.00 5.25
5089 5855 1.891150 TCTTACCTCCCGTCTGAACAC 59.109 52.381 0.00 0.00 0.00 3.32
5093 5859 1.273098 ACCTCCCGTCTGAACACCTAT 60.273 52.381 0.00 0.00 0.00 2.57
5179 5945 6.777091 CCCAAAGATGATTAGAGAGAGAGAGA 59.223 42.308 0.00 0.00 0.00 3.10
5180 5946 7.040201 CCCAAAGATGATTAGAGAGAGAGAGAG 60.040 44.444 0.00 0.00 0.00 3.20
5190 5956 6.235231 AGAGAGAGAGAGAGATTAACGACT 57.765 41.667 0.00 0.00 0.00 4.18
5207 5973 2.672874 CGACTGGTGTGTATTGGTCATG 59.327 50.000 0.00 0.00 0.00 3.07
5253 6019 4.400961 GTCCTTGGCAGCCTCGCT 62.401 66.667 14.15 0.00 40.77 4.93
5270 6036 3.978723 CTGCACGCTGAGTCCTCCG 62.979 68.421 0.00 0.00 0.00 4.63
5327 6093 2.484417 CCTAGACGCAGCTGGAATGATT 60.484 50.000 17.12 0.00 0.00 2.57
5351 6117 1.533273 AGTACAGCGTGGGGTGAGT 60.533 57.895 0.00 0.00 44.37 3.41
5379 6145 7.862274 ATCTATCTATCTTTCATCACCACCA 57.138 36.000 0.00 0.00 0.00 4.17
5391 6157 0.168788 CACCACCAGCAGCGTAATTG 59.831 55.000 0.00 0.00 0.00 2.32
5396 6162 1.349627 CAGCAGCGTAATTGGCTCG 59.650 57.895 3.14 2.07 39.08 5.03
5460 6226 5.550290 TGTCATGTATCATGTGTGACAACT 58.450 37.500 14.23 0.00 44.19 3.16
5461 6227 5.409214 TGTCATGTATCATGTGTGACAACTG 59.591 40.000 14.23 0.00 44.19 3.16
5462 6228 5.639082 GTCATGTATCATGTGTGACAACTGA 59.361 40.000 9.13 1.49 39.10 3.41
5463 6229 5.639082 TCATGTATCATGTGTGACAACTGAC 59.361 40.000 9.13 0.00 37.14 3.51
5464 6230 4.954875 TGTATCATGTGTGACAACTGACA 58.045 39.130 1.06 0.00 37.14 3.58
5465 6231 5.363939 TGTATCATGTGTGACAACTGACAA 58.636 37.500 1.06 0.00 37.14 3.18
5466 6232 4.818534 ATCATGTGTGACAACTGACAAC 57.181 40.909 1.06 0.00 37.14 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 291 4.716003 GGTTCCTTCTTCACCGGG 57.284 61.111 6.32 0.00 0.00 5.73
497 503 1.867289 GCTGTCGCAGATGACGATGAT 60.867 52.381 10.46 0.00 42.26 2.45
500 506 1.587350 CGCTGTCGCAGATGACGAT 60.587 57.895 10.46 0.00 42.26 3.73
717 727 4.506886 TCGGCCAAACACGATAAATTTT 57.493 36.364 2.24 0.00 33.69 1.82
770 780 9.523730 CAGGCACGTTTTAAAATAATAAAAAGC 57.476 29.630 3.52 0.00 37.59 3.51
777 787 5.859648 CGTTCCAGGCACGTTTTAAAATAAT 59.140 36.000 3.07 0.00 32.80 1.28
834 846 7.899973 AGTCGGTGTAAAAATTAGGTCTAAGA 58.100 34.615 0.00 0.00 0.00 2.10
837 849 7.092716 GTGAGTCGGTGTAAAAATTAGGTCTA 58.907 38.462 0.00 0.00 0.00 2.59
865 878 2.158841 GGCGCTTAAAATTGTCGTCTGA 59.841 45.455 7.64 0.00 0.00 3.27
874 887 1.005450 TCCTCAGGGGCGCTTAAAATT 59.995 47.619 7.64 0.00 34.39 1.82
896 909 3.279434 GTGGTAGTAAGGCCATCTTTGG 58.721 50.000 5.01 0.00 46.66 3.28
897 910 3.279434 GGTGGTAGTAAGGCCATCTTTG 58.721 50.000 5.01 0.00 37.09 2.77
898 911 2.916934 TGGTGGTAGTAAGGCCATCTTT 59.083 45.455 5.01 0.00 36.84 2.52
899 912 2.557869 TGGTGGTAGTAAGGCCATCTT 58.442 47.619 5.01 0.00 36.84 2.40
900 913 2.263895 TGGTGGTAGTAAGGCCATCT 57.736 50.000 5.01 2.17 36.84 2.90
901 914 3.127425 GATGGTGGTAGTAAGGCCATC 57.873 52.381 5.01 6.18 45.60 3.51
902 915 1.774856 GGATGGTGGTAGTAAGGCCAT 59.225 52.381 5.01 0.00 42.04 4.40
903 916 1.209621 GGATGGTGGTAGTAAGGCCA 58.790 55.000 5.01 0.00 0.00 5.36
904 917 1.416772 GAGGATGGTGGTAGTAAGGCC 59.583 57.143 0.00 0.00 0.00 5.19
905 918 1.068741 CGAGGATGGTGGTAGTAAGGC 59.931 57.143 0.00 0.00 0.00 4.35
906 919 1.687123 CCGAGGATGGTGGTAGTAAGG 59.313 57.143 0.00 0.00 0.00 2.69
907 920 2.385803 ACCGAGGATGGTGGTAGTAAG 58.614 52.381 0.00 0.00 41.85 2.34
993 1006 0.962356 AACTCCAAGCCATGCTTCCG 60.962 55.000 0.00 0.00 46.77 4.30
1200 1213 5.977635 TCACTTTGAGGTATACAGATGGTG 58.022 41.667 5.01 6.51 0.00 4.17
1208 1221 9.141400 CAGAACTAGTTTCACTTTGAGGTATAC 57.859 37.037 10.02 0.00 36.57 1.47
1209 1222 7.817962 GCAGAACTAGTTTCACTTTGAGGTATA 59.182 37.037 10.02 0.00 36.57 1.47
1210 1223 6.651225 GCAGAACTAGTTTCACTTTGAGGTAT 59.349 38.462 10.02 0.00 36.57 2.73
1266 1282 4.798924 GCAAGCATTTCCATTGTAACCACA 60.799 41.667 0.00 0.00 0.00 4.17
1267 1283 3.679502 GCAAGCATTTCCATTGTAACCAC 59.320 43.478 0.00 0.00 0.00 4.16
1269 1285 4.192429 AGCAAGCATTTCCATTGTAACC 57.808 40.909 0.00 0.00 0.00 2.85
1270 1286 7.331687 ACATAAAGCAAGCATTTCCATTGTAAC 59.668 33.333 0.00 0.00 0.00 2.50
1271 1287 7.385267 ACATAAAGCAAGCATTTCCATTGTAA 58.615 30.769 0.00 0.00 0.00 2.41
1273 1289 5.797051 ACATAAAGCAAGCATTTCCATTGT 58.203 33.333 0.00 0.00 0.00 2.71
1274 1290 6.730960 AACATAAAGCAAGCATTTCCATTG 57.269 33.333 0.00 0.00 0.00 2.82
1276 1292 6.348704 GCAAAACATAAAGCAAGCATTTCCAT 60.349 34.615 0.00 0.00 0.00 3.41
1277 1293 5.049543 GCAAAACATAAAGCAAGCATTTCCA 60.050 36.000 0.00 0.00 0.00 3.53
1278 1294 5.049543 TGCAAAACATAAAGCAAGCATTTCC 60.050 36.000 0.00 0.00 33.48 3.13
1279 1295 5.988092 TGCAAAACATAAAGCAAGCATTTC 58.012 33.333 0.00 0.00 33.48 2.17
1280 1296 5.759273 TCTGCAAAACATAAAGCAAGCATTT 59.241 32.000 0.00 0.00 36.44 2.32
1291 1307 1.173043 CCGGGCTCTGCAAAACATAA 58.827 50.000 0.00 0.00 0.00 1.90
1292 1308 0.326595 TCCGGGCTCTGCAAAACATA 59.673 50.000 0.00 0.00 0.00 2.29
1293 1309 0.323725 ATCCGGGCTCTGCAAAACAT 60.324 50.000 0.00 0.00 0.00 2.71
1333 1349 3.086600 GGCTGGAGGTGAGAGGGG 61.087 72.222 0.00 0.00 0.00 4.79
1366 1382 1.203287 GGCTTTTGTCCCTTGAGCATC 59.797 52.381 0.00 0.00 35.12 3.91
1381 1397 6.665248 AGATGCTTTTAATTACCAGAGGCTTT 59.335 34.615 0.00 0.00 0.00 3.51
1407 1423 1.330521 GCACAACGCTTCTCACAAAGA 59.669 47.619 0.00 0.00 37.77 2.52
1408 1424 1.597937 GGCACAACGCTTCTCACAAAG 60.598 52.381 0.00 0.00 41.91 2.77
1411 1427 0.880278 GAGGCACAACGCTTCTCACA 60.880 55.000 0.00 0.00 43.23 3.58
1412 1428 1.862806 GAGGCACAACGCTTCTCAC 59.137 57.895 0.00 0.00 43.23 3.51
1416 1432 0.037790 AGAGAGAGGCACAACGCTTC 60.038 55.000 0.00 0.00 46.82 3.86
1418 1434 1.589113 GAGAGAGAGGCACAACGCT 59.411 57.895 0.00 0.00 41.91 5.07
1419 1435 1.803519 CGAGAGAGAGGCACAACGC 60.804 63.158 0.00 0.00 41.28 4.84
1421 1437 0.315568 ACACGAGAGAGAGGCACAAC 59.684 55.000 0.00 0.00 0.00 3.32
1422 1438 0.315251 CACACGAGAGAGAGGCACAA 59.685 55.000 0.00 0.00 0.00 3.33
1438 1471 3.475566 AGCTTAGCAACACTTCTCACA 57.524 42.857 7.07 0.00 0.00 3.58
1472 1510 2.348888 CGGCGGGTCCTAGTCAAGT 61.349 63.158 0.00 0.00 0.00 3.16
1473 1511 2.494918 CGGCGGGTCCTAGTCAAG 59.505 66.667 0.00 0.00 0.00 3.02
1474 1512 3.072468 CCGGCGGGTCCTAGTCAA 61.072 66.667 20.56 0.00 0.00 3.18
1475 1513 4.051167 TCCGGCGGGTCCTAGTCA 62.051 66.667 27.98 0.00 33.83 3.41
1476 1514 3.217743 CTCCGGCGGGTCCTAGTC 61.218 72.222 27.98 0.00 33.83 2.59
1598 1636 0.820226 TGAGCAGATCCTTCTCCGTG 59.180 55.000 0.00 0.00 0.00 4.94
1667 1705 2.264480 CTGGTGGAATCACGGCGA 59.736 61.111 16.62 0.00 44.50 5.54
1731 1952 9.014297 GTATTTTTATCCATGAGAATGTAGGGG 57.986 37.037 0.00 0.00 0.00 4.79
1736 1957 9.685276 TCAGTGTATTTTTATCCATGAGAATGT 57.315 29.630 0.00 0.00 0.00 2.71
1761 1982 7.435068 TGTAGGTGCAAGAGTTATTTCTTTC 57.565 36.000 0.00 0.00 35.28 2.62
1817 2040 3.237268 TGCCACTACCAAACCATTCTT 57.763 42.857 0.00 0.00 0.00 2.52
1875 2116 5.643777 CAGACAATTTTAGACCTACCACTGG 59.356 44.000 0.00 0.00 0.00 4.00
1909 2150 1.196354 GCTGTCATCATAGGCGCATTC 59.804 52.381 10.83 0.00 0.00 2.67
1911 2152 0.107268 TGCTGTCATCATAGGCGCAT 59.893 50.000 10.83 3.98 0.00 4.73
1913 2154 0.305922 GTTGCTGTCATCATAGGCGC 59.694 55.000 0.00 0.00 0.00 6.53
1915 2156 2.871022 CAGAGTTGCTGTCATCATAGGC 59.129 50.000 0.00 0.00 39.85 3.93
1941 2182 0.611714 TCCCTTCTCCTTGGCGTAAC 59.388 55.000 0.00 0.00 0.00 2.50
2084 2333 7.648510 GTGATTATCCTTTTCCTGAGTAGTACG 59.351 40.741 0.00 0.00 0.00 3.67
2119 2368 3.264947 TCATATGCAAGCAGTGACTGTC 58.735 45.455 14.82 6.68 33.43 3.51
2125 2374 2.635714 TGGACTCATATGCAAGCAGTG 58.364 47.619 0.00 2.59 0.00 3.66
2129 2378 4.153835 GCTTCTATGGACTCATATGCAAGC 59.846 45.833 0.00 0.00 36.66 4.01
2225 2474 5.417580 GGATCTAAACAAATGTTGGCCTACA 59.582 40.000 22.33 22.33 38.44 2.74
2453 2702 1.887320 GCTTCACAGCAAGCATAACG 58.113 50.000 1.85 0.00 46.93 3.18
2511 2760 9.053840 GCTTCTCTGTTTAATTATAACCCTACC 57.946 37.037 0.00 0.00 0.00 3.18
2524 2773 6.493115 TGGAATCATTTGGCTTCTCTGTTTAA 59.507 34.615 0.00 0.00 0.00 1.52
2533 2782 2.419159 GCCCTTGGAATCATTTGGCTTC 60.419 50.000 0.00 0.00 34.61 3.86
2583 2832 0.647410 CCGAAGCACAACTAGATGCG 59.353 55.000 0.00 0.00 46.74 4.73
2585 2834 2.416547 CCAACCGAAGCACAACTAGATG 59.583 50.000 0.00 0.00 0.00 2.90
2601 2851 1.210478 TCTAGCTCAAGATGCCCAACC 59.790 52.381 0.00 0.00 0.00 3.77
2602 2852 2.698855 TCTAGCTCAAGATGCCCAAC 57.301 50.000 0.00 0.00 0.00 3.77
2614 2864 7.386573 GCTCCTTTGAATACCTAATTCTAGCTC 59.613 40.741 0.00 0.00 43.83 4.09
2620 2870 9.305925 CAAAATGCTCCTTTGAATACCTAATTC 57.694 33.333 1.02 0.00 43.77 2.17
2632 2882 2.145536 GGGCAACAAAATGCTCCTTTG 58.854 47.619 0.00 4.76 45.68 2.77
2675 2925 9.599866 CATCAGACAATGTTTATGAAGGTACTA 57.400 33.333 0.00 0.00 38.49 1.82
2712 2962 1.896339 TTCTTCACGCAATGTCGCCG 61.896 55.000 0.00 0.00 0.00 6.46
2717 2967 3.190535 GGTATTGGTTCTTCACGCAATGT 59.809 43.478 0.00 0.00 32.04 2.71
2724 2974 1.092348 GGGCGGTATTGGTTCTTCAC 58.908 55.000 0.00 0.00 0.00 3.18
2725 2975 0.988832 AGGGCGGTATTGGTTCTTCA 59.011 50.000 0.00 0.00 0.00 3.02
2750 3000 0.327924 TTCCGGACGGAGGTAGTACA 59.672 55.000 13.64 0.00 46.06 2.90
2767 3017 5.082251 ACTAGAACCACGTCCCTTATTTC 57.918 43.478 0.00 0.00 0.00 2.17
2775 3025 4.361451 TCGAAATACTAGAACCACGTCC 57.639 45.455 0.00 0.00 0.00 4.79
2778 3028 4.030977 CCGTTTCGAAATACTAGAACCACG 59.969 45.833 14.69 8.62 31.72 4.94
2782 3032 8.626093 AATACTCCGTTTCGAAATACTAGAAC 57.374 34.615 14.69 0.00 0.00 3.01
2785 3035 8.403606 ACAAATACTCCGTTTCGAAATACTAG 57.596 34.615 14.69 11.49 0.00 2.57
2786 3036 9.853555 TTACAAATACTCCGTTTCGAAATACTA 57.146 29.630 14.69 0.00 0.00 1.82
2787 3037 8.761575 TTACAAATACTCCGTTTCGAAATACT 57.238 30.769 14.69 0.00 0.00 2.12
2788 3038 9.254421 GTTTACAAATACTCCGTTTCGAAATAC 57.746 33.333 14.69 1.49 0.00 1.89
2791 3041 6.259608 TGGTTTACAAATACTCCGTTTCGAAA 59.740 34.615 6.47 6.47 0.00 3.46
2792 3042 5.757320 TGGTTTACAAATACTCCGTTTCGAA 59.243 36.000 0.00 0.00 0.00 3.71
2793 3043 5.295950 TGGTTTACAAATACTCCGTTTCGA 58.704 37.500 0.00 0.00 0.00 3.71
2794 3044 5.406175 TCTGGTTTACAAATACTCCGTTTCG 59.594 40.000 0.00 0.00 0.00 3.46
2796 3046 8.851541 TTATCTGGTTTACAAATACTCCGTTT 57.148 30.769 0.00 0.00 0.00 3.60
2797 3047 9.457436 AATTATCTGGTTTACAAATACTCCGTT 57.543 29.630 0.00 0.00 0.00 4.44
2818 3084 6.849697 TGGTCCTCTCCTATACCACAAATTAT 59.150 38.462 0.00 0.00 37.09 1.28
2834 3100 5.486526 CAATATATTGCCTCTGGTCCTCTC 58.513 45.833 12.38 0.00 0.00 3.20
2869 3135 4.196626 TGGATGGAAGGTTAACACTACG 57.803 45.455 8.10 0.00 0.00 3.51
2871 3137 5.836024 ACTTGGATGGAAGGTTAACACTA 57.164 39.130 8.10 0.00 0.00 2.74
2881 3147 4.899502 ACAGTCAGTAACTTGGATGGAAG 58.100 43.478 0.00 0.00 35.45 3.46
2884 3150 7.687941 AAAATACAGTCAGTAACTTGGATGG 57.312 36.000 0.00 0.00 35.45 3.51
2956 3223 9.431887 GAACATTAGTCTTCATGTTTACCACTA 57.568 33.333 10.10 0.00 42.46 2.74
2965 3232 9.778741 TTTCTAACAGAACATTAGTCTTCATGT 57.221 29.630 0.00 0.00 33.26 3.21
2976 3243 5.239525 GTCCACAGCTTTCTAACAGAACATT 59.760 40.000 0.00 0.00 33.26 2.71
2982 3249 5.237815 TGTATGTCCACAGCTTTCTAACAG 58.762 41.667 0.00 0.00 0.00 3.16
2988 3255 5.973565 GCATTTATGTATGTCCACAGCTTTC 59.026 40.000 0.00 0.00 0.00 2.62
2989 3256 5.163519 GGCATTTATGTATGTCCACAGCTTT 60.164 40.000 0.00 0.00 0.00 3.51
3097 3527 1.204231 TGTGTCTGCTGAGCATCTCTC 59.796 52.381 7.94 3.44 38.13 3.20
3202 3632 5.931724 TCATTCAAGACGAGTTATTTGCTCA 59.068 36.000 0.00 0.00 33.45 4.26
3227 3658 0.250295 TGGTTGAGTCAAAGAGCCCG 60.250 55.000 7.25 0.00 0.00 6.13
3304 3735 2.208562 TAGGGGAAGGGGAGTGGCAT 62.209 60.000 0.00 0.00 0.00 4.40
3305 3736 2.424989 TTAGGGGAAGGGGAGTGGCA 62.425 60.000 0.00 0.00 0.00 4.92
3391 3847 5.620738 AGACTCCAAGCATTATTCAGCTA 57.379 39.130 0.00 0.00 40.90 3.32
3392 3848 4.500499 AGACTCCAAGCATTATTCAGCT 57.500 40.909 0.00 0.00 44.31 4.24
3394 3850 5.236047 GCAGTAGACTCCAAGCATTATTCAG 59.764 44.000 0.00 0.00 0.00 3.02
3395 3851 5.104776 AGCAGTAGACTCCAAGCATTATTCA 60.105 40.000 0.00 0.00 0.00 2.57
3396 3852 5.363939 AGCAGTAGACTCCAAGCATTATTC 58.636 41.667 0.00 0.00 0.00 1.75
3484 3947 1.327690 TAACACTAGCTCTGGCCCCG 61.328 60.000 0.00 0.00 39.73 5.73
3535 3998 2.049156 TGCGACAGGCTGAACTCG 60.049 61.111 23.66 20.53 44.05 4.18
3666 4135 8.846943 TTTCATGTTCTTTCTGCAGATAAGTA 57.153 30.769 19.04 13.99 0.00 2.24
3667 4136 7.663081 TCTTTCATGTTCTTTCTGCAGATAAGT 59.337 33.333 19.04 5.64 0.00 2.24
3668 4137 8.037382 TCTTTCATGTTCTTTCTGCAGATAAG 57.963 34.615 19.04 21.22 0.00 1.73
3669 4138 7.984422 TCTTTCATGTTCTTTCTGCAGATAA 57.016 32.000 19.04 13.32 0.00 1.75
3708 4177 1.339055 CGGGCTGACCTGAAAATGAGA 60.339 52.381 0.00 0.00 46.41 3.27
3752 4221 4.202264 ACTGTCCAGTAAGTGAAGAACCTG 60.202 45.833 0.00 0.00 40.43 4.00
3803 4273 3.937706 CACTAATCAGGCAAGAGGTGAAG 59.062 47.826 0.00 0.00 0.00 3.02
3819 4289 4.546829 TTAGTTCAACTCGGCCACTAAT 57.453 40.909 2.24 0.00 0.00 1.73
3821 4291 3.656559 GTTTAGTTCAACTCGGCCACTA 58.343 45.455 2.24 0.00 0.00 2.74
3822 4292 2.490991 GTTTAGTTCAACTCGGCCACT 58.509 47.619 2.24 0.00 0.00 4.00
3824 4294 1.202557 ACGTTTAGTTCAACTCGGCCA 60.203 47.619 2.24 0.00 0.00 5.36
3825 4295 1.193874 CACGTTTAGTTCAACTCGGCC 59.806 52.381 0.00 0.00 0.00 6.13
3826 4296 1.398071 GCACGTTTAGTTCAACTCGGC 60.398 52.381 0.00 0.00 0.00 5.54
3827 4297 1.862201 TGCACGTTTAGTTCAACTCGG 59.138 47.619 0.00 0.00 0.00 4.63
3829 4299 4.607235 CGAAATGCACGTTTAGTTCAACTC 59.393 41.667 0.00 0.00 28.16 3.01
3942 4420 2.048222 ACCGACTGTGGCGTGATG 60.048 61.111 0.00 0.00 0.00 3.07
4035 4520 7.711846 TCAACCGATTCTTCTTGAAAAATGAA 58.288 30.769 0.00 0.00 38.29 2.57
4036 4521 7.270757 TCAACCGATTCTTCTTGAAAAATGA 57.729 32.000 0.00 0.00 38.29 2.57
4037 4522 8.025445 AGATCAACCGATTCTTCTTGAAAAATG 58.975 33.333 0.00 0.00 38.29 2.32
4038 4523 8.025445 CAGATCAACCGATTCTTCTTGAAAAAT 58.975 33.333 0.00 0.00 38.29 1.82
4039 4524 7.362662 CAGATCAACCGATTCTTCTTGAAAAA 58.637 34.615 0.00 0.00 38.29 1.94
4040 4525 6.568462 GCAGATCAACCGATTCTTCTTGAAAA 60.568 38.462 0.00 0.00 38.29 2.29
4041 4526 5.106555 GCAGATCAACCGATTCTTCTTGAAA 60.107 40.000 0.00 0.00 38.29 2.69
4054 4546 0.527113 TTTGCCATGCAGATCAACCG 59.473 50.000 0.00 0.00 40.61 4.44
4084 4583 1.081892 CTGAGCACCAGACCATTTCG 58.918 55.000 0.33 0.00 45.78 3.46
4086 4585 1.067295 TCCTGAGCACCAGACCATTT 58.933 50.000 7.59 0.00 45.78 2.32
4098 4597 1.817099 CGTGCTTGGGATCCTGAGC 60.817 63.158 24.25 24.25 35.24 4.26
4391 4890 1.227380 CTGGATGTCGTAGCAGCCC 60.227 63.158 8.59 0.00 43.74 5.19
4394 4893 0.387202 CTCCCTGGATGTCGTAGCAG 59.613 60.000 0.00 0.00 0.00 4.24
4433 4932 3.004524 GCCCTCCGTAGTAGAAGTATGTG 59.995 52.174 0.00 0.00 0.00 3.21
4436 4935 2.176364 TGGCCCTCCGTAGTAGAAGTAT 59.824 50.000 0.00 0.00 34.14 2.12
4482 4981 1.561542 AGAGCCTAACAATGTCAGGGG 59.438 52.381 4.49 0.00 0.00 4.79
4501 5000 2.195922 GCCAAGAAACAACACAGCAAG 58.804 47.619 0.00 0.00 0.00 4.01
4509 5008 2.222707 GCAAACAACGCCAAGAAACAAC 60.223 45.455 0.00 0.00 0.00 3.32
4511 5010 1.203523 AGCAAACAACGCCAAGAAACA 59.796 42.857 0.00 0.00 0.00 2.83
4512 5011 1.921243 AGCAAACAACGCCAAGAAAC 58.079 45.000 0.00 0.00 0.00 2.78
4515 5014 0.527385 GCAAGCAAACAACGCCAAGA 60.527 50.000 0.00 0.00 0.00 3.02
4516 5015 0.528249 AGCAAGCAAACAACGCCAAG 60.528 50.000 0.00 0.00 0.00 3.61
4518 5017 0.108424 AAAGCAAGCAAACAACGCCA 60.108 45.000 0.00 0.00 0.00 5.69
4520 5019 2.804421 AAAAAGCAAGCAAACAACGC 57.196 40.000 0.00 0.00 0.00 4.84
4547 5046 5.416947 ACGGACTACTATCGCAAAAGATTT 58.583 37.500 0.00 0.00 32.39 2.17
4560 5059 4.747265 ATAATGGGGGTACGGACTACTA 57.253 45.455 0.00 0.00 0.00 1.82
4565 5064 2.102925 TCGAAATAATGGGGGTACGGAC 59.897 50.000 0.00 0.00 0.00 4.79
4567 5066 2.103601 AGTCGAAATAATGGGGGTACGG 59.896 50.000 0.00 0.00 0.00 4.02
4568 5067 3.464111 AGTCGAAATAATGGGGGTACG 57.536 47.619 0.00 0.00 0.00 3.67
4569 5068 4.590222 TCCTAGTCGAAATAATGGGGGTAC 59.410 45.833 0.00 0.00 0.00 3.34
4570 5069 4.818447 TCCTAGTCGAAATAATGGGGGTA 58.182 43.478 0.00 0.00 0.00 3.69
4571 5070 3.660959 TCCTAGTCGAAATAATGGGGGT 58.339 45.455 0.00 0.00 0.00 4.95
4572 5071 4.910458 ATCCTAGTCGAAATAATGGGGG 57.090 45.455 0.00 0.00 0.00 5.40
4573 5072 7.182817 TGATATCCTAGTCGAAATAATGGGG 57.817 40.000 0.00 0.00 0.00 4.96
4574 5073 9.102757 CAATGATATCCTAGTCGAAATAATGGG 57.897 37.037 0.00 0.00 0.00 4.00
4585 5084 8.254508 CCTAAGCCTAACAATGATATCCTAGTC 58.745 40.741 0.00 0.00 0.00 2.59
4586 5085 7.735321 ACCTAAGCCTAACAATGATATCCTAGT 59.265 37.037 0.00 0.00 0.00 2.57
4587 5086 8.140112 ACCTAAGCCTAACAATGATATCCTAG 57.860 38.462 0.00 0.00 0.00 3.02
4611 5110 3.914426 TGGATCCAGGAGCTAAAAGAC 57.086 47.619 11.44 0.00 0.00 3.01
4612 5111 5.846164 TCATATGGATCCAGGAGCTAAAAGA 59.154 40.000 21.33 4.81 0.00 2.52
4613 5112 6.119240 TCATATGGATCCAGGAGCTAAAAG 57.881 41.667 21.33 2.64 0.00 2.27
4614 5113 5.513788 GCTCATATGGATCCAGGAGCTAAAA 60.514 44.000 35.47 13.82 41.28 1.52
4629 5130 1.080230 CCCTCGAGCGCTCATATGG 60.080 63.158 34.69 26.78 0.00 2.74
4639 5140 0.827368 ATTCCTCTCAACCCTCGAGC 59.173 55.000 6.99 0.00 0.00 5.03
4704 5209 2.457366 AAACTGGTGCTACTTCCTCG 57.543 50.000 0.00 0.00 0.00 4.63
4706 5211 5.063880 CAGTAAAAACTGGTGCTACTTCCT 58.936 41.667 0.00 0.00 34.28 3.36
4708 5213 7.486802 TTACAGTAAAAACTGGTGCTACTTC 57.513 36.000 10.08 0.00 41.76 3.01
4724 5229 8.220755 AGAAACACTGAAGCATTTTACAGTAA 57.779 30.769 0.00 0.00 40.84 2.24
4732 5237 7.661437 TGTATCTGTAGAAACACTGAAGCATTT 59.339 33.333 0.00 0.00 31.28 2.32
4733 5238 7.161404 TGTATCTGTAGAAACACTGAAGCATT 58.839 34.615 0.00 0.00 31.28 3.56
4734 5239 6.701340 TGTATCTGTAGAAACACTGAAGCAT 58.299 36.000 0.00 0.00 31.28 3.79
4735 5240 6.096673 TGTATCTGTAGAAACACTGAAGCA 57.903 37.500 0.00 0.00 31.28 3.91
4750 5255 7.212976 AGTAGATGAAATGCGATTGTATCTGT 58.787 34.615 0.00 0.00 31.96 3.41
4752 5257 9.579768 GATAGTAGATGAAATGCGATTGTATCT 57.420 33.333 0.00 0.00 33.29 1.98
4757 5262 8.978564 AGTAGATAGTAGATGAAATGCGATTG 57.021 34.615 0.00 0.00 0.00 2.67
4814 5319 1.132881 TGTTTGGATCTGCCCCCTTTT 60.133 47.619 0.00 0.00 34.97 2.27
4841 5349 6.096282 ACCATTAAATTTTGTAGATGGACGGG 59.904 38.462 16.97 0.00 37.91 5.28
4843 5351 7.148154 TGGACCATTAAATTTTGTAGATGGACG 60.148 37.037 16.97 0.00 37.91 4.79
4859 5367 6.969043 ACACAGAAGGATTATGGACCATTAA 58.031 36.000 13.40 5.63 42.67 1.40
4861 5369 5.456921 ACACAGAAGGATTATGGACCATT 57.543 39.130 13.40 0.00 42.67 3.16
4875 5383 4.359706 GCTTGTTGGGTTAAACACAGAAG 58.640 43.478 0.00 0.00 39.70 2.85
4878 5386 2.428890 TGGCTTGTTGGGTTAAACACAG 59.571 45.455 0.00 0.00 39.70 3.66
4879 5387 2.166664 GTGGCTTGTTGGGTTAAACACA 59.833 45.455 0.00 0.00 39.70 3.72
4880 5388 2.796735 CGTGGCTTGTTGGGTTAAACAC 60.797 50.000 0.00 0.00 39.70 3.32
4920 5487 4.410400 GGAGGAACGGCACAGGGG 62.410 72.222 0.00 0.00 0.00 4.79
5089 5855 3.275143 TGTTGTAATTGGGTCGCATAGG 58.725 45.455 0.00 0.00 0.00 2.57
5093 5859 2.552599 TCTGTTGTAATTGGGTCGCA 57.447 45.000 0.00 0.00 0.00 5.10
5179 5945 5.175859 CCAATACACACCAGTCGTTAATCT 58.824 41.667 0.00 0.00 0.00 2.40
5180 5946 4.933400 ACCAATACACACCAGTCGTTAATC 59.067 41.667 0.00 0.00 0.00 1.75
5186 5952 2.448926 TGACCAATACACACCAGTCG 57.551 50.000 0.00 0.00 0.00 4.18
5190 5956 4.015764 CAATCCATGACCAATACACACCA 58.984 43.478 0.00 0.00 0.00 4.17
5253 6019 4.056125 CGGAGGACTCAGCGTGCA 62.056 66.667 1.32 0.00 36.26 4.57
5270 6036 0.540923 ACAGCAGCTTCCATCTCCTC 59.459 55.000 0.00 0.00 0.00 3.71
5327 6093 1.341679 ACCCCACGCTGTACTCTCATA 60.342 52.381 0.00 0.00 0.00 2.15
5377 6143 1.723870 GAGCCAATTACGCTGCTGG 59.276 57.895 4.03 0.00 36.48 4.85
5378 6144 1.349627 CGAGCCAATTACGCTGCTG 59.650 57.895 4.03 0.00 36.48 4.41
5379 6145 1.815421 CCGAGCCAATTACGCTGCT 60.815 57.895 4.03 0.00 36.48 4.24
5391 6157 2.987149 CGATACAATATGTCACCGAGCC 59.013 50.000 0.00 0.00 0.00 4.70
5396 6162 6.363626 GTGTGAGATCGATACAATATGTCACC 59.636 42.308 0.00 0.00 41.02 4.02
5460 6226 1.742831 GTTTGACTGCAGGTGTTGTCA 59.257 47.619 19.93 9.45 37.62 3.58
5461 6227 2.017049 AGTTTGACTGCAGGTGTTGTC 58.983 47.619 19.93 6.62 0.00 3.18
5462 6228 2.128771 AGTTTGACTGCAGGTGTTGT 57.871 45.000 19.93 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.