Multiple sequence alignment - TraesCS7A01G234100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G234100 chr7A 100.000 2540 0 0 1 2540 206013933 206016472 0.000000e+00 4691.0
1 TraesCS7A01G234100 chr7A 94.310 580 32 1 1 579 603520201 603520780 0.000000e+00 887.0
2 TraesCS7A01G234100 chr7A 98.837 258 3 0 1 258 38115507 38115764 6.400000e-126 460.0
3 TraesCS7A01G234100 chr7A 84.010 394 49 7 2024 2403 728848521 728848914 1.440000e-97 366.0
4 TraesCS7A01G234100 chr7A 82.282 412 46 14 2029 2413 609338679 609338268 5.240000e-87 331.0
5 TraesCS7A01G234100 chr7A 90.909 88 8 0 1740 1827 639880860 639880947 4.440000e-23 119.0
6 TraesCS7A01G234100 chr7B 94.031 1156 53 8 582 1736 161239180 161240320 0.000000e+00 1738.0
7 TraesCS7A01G234100 chr7B 84.259 108 16 1 2424 2531 643700963 643701069 1.240000e-18 104.0
8 TraesCS7A01G234100 chr7B 84.615 91 14 0 2419 2509 630480637 630480547 9.680000e-15 91.6
9 TraesCS7A01G234100 chr7D 93.484 1105 56 8 580 1680 196963703 196964795 0.000000e+00 1628.0
10 TraesCS7A01G234100 chr7D 90.181 387 29 4 195 578 458352809 458353189 1.760000e-136 496.0
11 TraesCS7A01G234100 chr7D 83.693 417 40 6 2024 2413 618423625 618424040 3.990000e-98 368.0
12 TraesCS7A01G234100 chr7D 93.103 58 3 1 1679 1736 196998515 196998571 1.620000e-12 84.2
13 TraesCS7A01G234100 chr7D 84.337 83 13 0 1740 1822 465333878 465333796 5.820000e-12 82.4
14 TraesCS7A01G234100 chr7D 95.455 44 2 0 1899 1942 618423498 618423541 1.260000e-08 71.3
15 TraesCS7A01G234100 chr4B 89.081 577 58 2 3 579 616806176 616805605 0.000000e+00 712.0
16 TraesCS7A01G234100 chr4B 80.969 557 87 13 30 579 494025075 494024531 8.400000e-115 424.0
17 TraesCS7A01G234100 chr4B 91.026 156 11 2 31 185 37571289 37571136 9.210000e-50 207.0
18 TraesCS7A01G234100 chr2D 85.789 577 76 4 3 579 591782022 591781452 7.770000e-170 606.0
19 TraesCS7A01G234100 chr2D 82.933 416 44 10 2024 2413 590220610 590220196 1.450000e-92 350.0
20 TraesCS7A01G234100 chr2B 84.276 566 70 9 1075 1640 738164709 738164163 3.720000e-148 534.0
21 TraesCS7A01G234100 chr2B 80.251 557 91 13 30 579 692868824 692868280 3.940000e-108 401.0
22 TraesCS7A01G234100 chr2B 82.555 407 54 9 2022 2413 625181024 625180620 2.420000e-90 342.0
23 TraesCS7A01G234100 chr2B 85.047 107 15 1 2419 2524 170851195 170851301 9.610000e-20 108.0
24 TraesCS7A01G234100 chr2A 85.853 516 54 8 3 510 521574 521070 4.810000e-147 531.0
25 TraesCS7A01G234100 chr2A 81.688 557 83 13 30 579 618999414 618999958 1.790000e-121 446.0
26 TraesCS7A01G234100 chr2A 85.921 277 27 4 2149 2413 642585413 642585689 4.140000e-73 285.0
27 TraesCS7A01G234100 chr2A 86.207 174 15 6 963 1136 165103811 165103975 2.010000e-41 180.0
28 TraesCS7A01G234100 chr3B 85.366 451 52 13 1968 2413 487598952 487599393 2.980000e-124 455.0
29 TraesCS7A01G234100 chr3B 86.380 279 35 3 6 283 13496886 13497162 4.110000e-78 302.0
30 TraesCS7A01G234100 chr3B 89.140 221 24 0 360 580 13497168 13497388 2.490000e-70 276.0
31 TraesCS7A01G234100 chr3B 81.935 155 15 7 1150 1304 203695979 203695838 4.440000e-23 119.0
32 TraesCS7A01G234100 chr3B 85.938 64 8 1 2457 2520 577463317 577463379 1.630000e-07 67.6
33 TraesCS7A01G234100 chr1D 85.748 428 33 10 1191 1618 262304833 262305232 6.490000e-116 427.0
34 TraesCS7A01G234100 chr1D 88.235 119 14 0 2419 2537 286193795 286193913 2.630000e-30 143.0
35 TraesCS7A01G234100 chr1D 84.545 110 8 5 928 1036 463469696 463469797 1.610000e-17 100.0
36 TraesCS7A01G234100 chr5D 91.349 289 25 0 994 1282 384884246 384883958 1.830000e-106 396.0
37 TraesCS7A01G234100 chr5D 83.654 416 41 12 2024 2413 330629157 330629571 1.440000e-97 366.0
38 TraesCS7A01G234100 chr5D 83.213 417 42 10 2024 2413 330595478 330595893 8.640000e-95 357.0
39 TraesCS7A01G234100 chr5D 83.173 416 43 10 2024 2413 209499164 209499578 3.110000e-94 355.0
40 TraesCS7A01G234100 chr5D 84.337 83 13 0 1740 1822 309930361 309930279 5.820000e-12 82.4
41 TraesCS7A01G234100 chr6D 79.492 551 68 19 1899 2413 445855906 445856447 1.450000e-92 350.0
42 TraesCS7A01G234100 chr1A 82.651 415 45 9 2024 2413 446808439 446808027 2.420000e-90 342.0
43 TraesCS7A01G234100 chr1A 79.845 129 19 6 1899 2022 446808524 446808398 1.250000e-13 87.9
44 TraesCS7A01G234100 chr6A 88.087 277 21 4 2149 2413 135769318 135769042 4.080000e-83 318.0
45 TraesCS7A01G234100 chr6A 91.943 211 14 3 2206 2413 518537682 518537472 2.470000e-75 292.0
46 TraesCS7A01G234100 chr6A 80.159 126 16 7 1899 2018 135769608 135769486 4.500000e-13 86.1
47 TraesCS7A01G234100 chr3A 81.556 347 48 10 246 581 155961122 155961463 3.220000e-69 272.0
48 TraesCS7A01G234100 chrUn 78.497 386 54 19 2024 2401 34439455 34439819 2.540000e-55 226.0
49 TraesCS7A01G234100 chrUn 87.395 119 15 0 2419 2537 88211056 88211174 1.230000e-28 137.0
50 TraesCS7A01G234100 chr1B 87.931 174 16 3 963 1136 512051144 512051312 1.540000e-47 200.0
51 TraesCS7A01G234100 chr1B 90.099 101 10 0 2419 2519 397059726 397059626 5.700000e-27 132.0
52 TraesCS7A01G234100 chr5A 90.291 103 10 0 2419 2521 409823279 409823177 4.410000e-28 135.0
53 TraesCS7A01G234100 chr5A 84.615 91 14 0 1740 1830 680716345 680716435 9.680000e-15 91.6
54 TraesCS7A01G234100 chr3D 89.157 83 9 0 1740 1822 461592289 461592207 1.240000e-18 104.0
55 TraesCS7A01G234100 chr3D 87.952 83 10 0 1740 1822 554686055 554686137 5.780000e-17 99.0
56 TraesCS7A01G234100 chr3D 86.585 82 11 0 1740 1821 612529258 612529339 9.680000e-15 91.6
57 TraesCS7A01G234100 chr5B 85.714 84 11 1 1740 1822 650347209 650347126 1.250000e-13 87.9
58 TraesCS7A01G234100 chr4D 86.486 74 10 0 1740 1813 69178300 69178227 5.820000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G234100 chr7A 206013933 206016472 2539 False 4691.00 4691 100.000 1 2540 1 chr7A.!!$F2 2539
1 TraesCS7A01G234100 chr7A 603520201 603520780 579 False 887.00 887 94.310 1 579 1 chr7A.!!$F3 578
2 TraesCS7A01G234100 chr7B 161239180 161240320 1140 False 1738.00 1738 94.031 582 1736 1 chr7B.!!$F1 1154
3 TraesCS7A01G234100 chr7D 196963703 196964795 1092 False 1628.00 1628 93.484 580 1680 1 chr7D.!!$F1 1100
4 TraesCS7A01G234100 chr7D 618423498 618424040 542 False 219.65 368 89.574 1899 2413 2 chr7D.!!$F4 514
5 TraesCS7A01G234100 chr4B 616805605 616806176 571 True 712.00 712 89.081 3 579 1 chr4B.!!$R3 576
6 TraesCS7A01G234100 chr4B 494024531 494025075 544 True 424.00 424 80.969 30 579 1 chr4B.!!$R2 549
7 TraesCS7A01G234100 chr2D 591781452 591782022 570 True 606.00 606 85.789 3 579 1 chr2D.!!$R2 576
8 TraesCS7A01G234100 chr2B 738164163 738164709 546 True 534.00 534 84.276 1075 1640 1 chr2B.!!$R3 565
9 TraesCS7A01G234100 chr2B 692868280 692868824 544 True 401.00 401 80.251 30 579 1 chr2B.!!$R2 549
10 TraesCS7A01G234100 chr2A 521070 521574 504 True 531.00 531 85.853 3 510 1 chr2A.!!$R1 507
11 TraesCS7A01G234100 chr2A 618999414 618999958 544 False 446.00 446 81.688 30 579 1 chr2A.!!$F2 549
12 TraesCS7A01G234100 chr3B 13496886 13497388 502 False 289.00 302 87.760 6 580 2 chr3B.!!$F3 574
13 TraesCS7A01G234100 chr6D 445855906 445856447 541 False 350.00 350 79.492 1899 2413 1 chr6D.!!$F1 514
14 TraesCS7A01G234100 chr6A 135769042 135769608 566 True 202.05 318 84.123 1899 2413 2 chr6A.!!$R2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 972 0.674581 CTCGCCACATCAAAGCCTGA 60.675 55.0 0.0 0.0 38.81 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2468 2626 0.107848 AAGGATACGAACAAGGGGCG 60.108 55.0 0.0 0.0 46.39 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 6.402011 CCGGACATTTCCAAAATTGTTTATGC 60.402 38.462 0.00 0.00 43.00 3.14
189 191 5.804692 TTTCAAAGTTCAACGCTTCAGTA 57.195 34.783 0.00 0.00 0.00 2.74
234 237 8.512138 GCCTTTATTATGTCACTTGTAGTTGTT 58.488 33.333 0.00 0.00 0.00 2.83
312 315 6.321181 TCAGCCTGAGACATTTTTGTTACTTT 59.679 34.615 0.00 0.00 0.00 2.66
453 467 3.142951 CCACGTCAACAATCCCTGTTTA 58.857 45.455 0.00 0.00 46.49 2.01
454 468 3.566322 CCACGTCAACAATCCCTGTTTAA 59.434 43.478 0.00 0.00 46.49 1.52
490 504 4.421058 GTTGAAAATAGACCGGGATTTGC 58.579 43.478 6.32 8.04 0.00 3.68
502 516 2.695359 GGGATTTGCGAGTTCAGTGTA 58.305 47.619 0.00 0.00 0.00 2.90
504 518 2.415512 GGATTTGCGAGTTCAGTGTACC 59.584 50.000 0.00 0.00 0.00 3.34
591 605 1.130561 ACTTTTTCTATTCGCTGGCGC 59.869 47.619 10.28 0.00 39.59 6.53
599 613 1.926511 ATTCGCTGGCGCTCCAAAAG 61.927 55.000 7.64 0.00 42.91 2.27
611 625 0.991920 TCCAAAAGGGGCACTCTAGG 59.008 55.000 0.00 0.00 37.22 3.02
890 907 4.936685 TCTCTATATAGCCAGAGCCAGA 57.063 45.455 4.75 0.00 41.25 3.86
891 908 5.464588 TCTCTATATAGCCAGAGCCAGAT 57.535 43.478 4.75 0.00 41.25 2.90
892 909 5.445069 TCTCTATATAGCCAGAGCCAGATC 58.555 45.833 4.75 0.00 41.25 2.75
893 910 5.044550 TCTCTATATAGCCAGAGCCAGATCA 60.045 44.000 4.75 0.00 41.25 2.92
954 971 1.798735 CTCGCCACATCAAAGCCTG 59.201 57.895 0.00 0.00 0.00 4.85
955 972 0.674581 CTCGCCACATCAAAGCCTGA 60.675 55.000 0.00 0.00 38.81 3.86
975 992 2.251409 TTATCGTCGTCTCCCTCGAT 57.749 50.000 0.00 0.00 43.66 3.59
977 994 1.222766 ATCGTCGTCTCCCTCGATCG 61.223 60.000 9.36 9.36 38.38 3.69
978 995 1.881709 CGTCGTCTCCCTCGATCGA 60.882 63.158 18.32 18.32 39.45 3.59
979 996 1.222766 CGTCGTCTCCCTCGATCGAT 61.223 60.000 19.78 0.00 39.45 3.59
987 1004 0.823769 CCCTCGATCGATCTCCACCA 60.824 60.000 19.78 0.00 0.00 4.17
1560 1577 1.468506 TAGAGCTGCACGGGTGAACA 61.469 55.000 1.02 0.00 0.00 3.18
1570 1587 3.308866 GCACGGGTGAACATATGTACTTC 59.691 47.826 9.21 3.88 0.00 3.01
1635 1653 5.423717 CGTATGCGTGTTCATAGTTTCATC 58.576 41.667 0.00 0.00 30.30 2.92
1636 1654 5.232202 CGTATGCGTGTTCATAGTTTCATCT 59.768 40.000 0.00 0.00 30.30 2.90
1637 1655 6.416750 CGTATGCGTGTTCATAGTTTCATCTA 59.583 38.462 0.00 0.00 30.30 1.98
1638 1656 6.834959 ATGCGTGTTCATAGTTTCATCTAG 57.165 37.500 0.00 0.00 0.00 2.43
1712 1731 1.939934 ACATCAATAATGTGCGGACGG 59.060 47.619 1.60 0.00 47.00 4.79
1731 1750 1.673626 GGGTAACGACGGATGCTCAAA 60.674 52.381 0.00 0.00 37.60 2.69
1732 1751 2.277084 GGTAACGACGGATGCTCAAAT 58.723 47.619 0.00 0.00 0.00 2.32
1733 1752 3.450578 GGTAACGACGGATGCTCAAATA 58.549 45.455 0.00 0.00 0.00 1.40
1734 1753 3.244579 GGTAACGACGGATGCTCAAATAC 59.755 47.826 0.00 0.00 0.00 1.89
1735 1754 2.961526 ACGACGGATGCTCAAATACT 57.038 45.000 0.00 0.00 0.00 2.12
1736 1755 3.247006 ACGACGGATGCTCAAATACTT 57.753 42.857 0.00 0.00 0.00 2.24
1737 1756 3.596214 ACGACGGATGCTCAAATACTTT 58.404 40.909 0.00 0.00 0.00 2.66
1738 1757 3.617263 ACGACGGATGCTCAAATACTTTC 59.383 43.478 0.00 0.00 0.00 2.62
1739 1758 3.865745 CGACGGATGCTCAAATACTTTCT 59.134 43.478 0.00 0.00 0.00 2.52
1740 1759 5.041287 CGACGGATGCTCAAATACTTTCTA 58.959 41.667 0.00 0.00 0.00 2.10
1741 1760 5.051641 CGACGGATGCTCAAATACTTTCTAC 60.052 44.000 0.00 0.00 0.00 2.59
1742 1761 5.978814 ACGGATGCTCAAATACTTTCTACT 58.021 37.500 0.00 0.00 0.00 2.57
1743 1762 6.043411 ACGGATGCTCAAATACTTTCTACTC 58.957 40.000 0.00 0.00 0.00 2.59
1744 1763 5.463724 CGGATGCTCAAATACTTTCTACTCC 59.536 44.000 0.00 0.00 0.00 3.85
1745 1764 5.760743 GGATGCTCAAATACTTTCTACTCCC 59.239 44.000 0.00 0.00 0.00 4.30
1746 1765 6.408662 GGATGCTCAAATACTTTCTACTCCCT 60.409 42.308 0.00 0.00 0.00 4.20
1747 1766 5.978814 TGCTCAAATACTTTCTACTCCCTC 58.021 41.667 0.00 0.00 0.00 4.30
1748 1767 5.483937 TGCTCAAATACTTTCTACTCCCTCA 59.516 40.000 0.00 0.00 0.00 3.86
1749 1768 6.045955 GCTCAAATACTTTCTACTCCCTCAG 58.954 44.000 0.00 0.00 0.00 3.35
1750 1769 6.351456 GCTCAAATACTTTCTACTCCCTCAGT 60.351 42.308 0.00 0.00 39.41 3.41
1751 1770 7.171630 TCAAATACTTTCTACTCCCTCAGTC 57.828 40.000 0.00 0.00 36.43 3.51
1752 1771 6.154706 TCAAATACTTTCTACTCCCTCAGTCC 59.845 42.308 0.00 0.00 36.43 3.85
1753 1772 2.448453 ACTTTCTACTCCCTCAGTCCG 58.552 52.381 0.00 0.00 36.43 4.79
1754 1773 1.751924 CTTTCTACTCCCTCAGTCCGG 59.248 57.143 0.00 0.00 36.43 5.14
1755 1774 0.033405 TTCTACTCCCTCAGTCCGGG 60.033 60.000 0.00 0.00 43.38 5.73
1762 1781 1.497161 CCCTCAGTCCGGGAATAAGT 58.503 55.000 0.00 0.00 44.90 2.24
1763 1782 1.139058 CCCTCAGTCCGGGAATAAGTG 59.861 57.143 0.00 0.00 44.90 3.16
1764 1783 1.831736 CCTCAGTCCGGGAATAAGTGT 59.168 52.381 0.00 0.00 0.00 3.55
1765 1784 3.028850 CCTCAGTCCGGGAATAAGTGTA 58.971 50.000 0.00 0.00 0.00 2.90
1766 1785 3.181478 CCTCAGTCCGGGAATAAGTGTAC 60.181 52.174 0.00 0.00 0.00 2.90
1767 1786 3.700038 CTCAGTCCGGGAATAAGTGTACT 59.300 47.826 0.00 0.00 0.00 2.73
1768 1787 4.091549 TCAGTCCGGGAATAAGTGTACTT 58.908 43.478 0.00 2.51 39.85 2.24
1769 1788 5.263599 TCAGTCCGGGAATAAGTGTACTTA 58.736 41.667 0.00 6.92 42.04 2.24
1771 1790 7.062322 TCAGTCCGGGAATAAGTGTACTTATA 58.938 38.462 15.48 0.00 45.55 0.98
1772 1791 7.727186 TCAGTCCGGGAATAAGTGTACTTATAT 59.273 37.037 15.48 7.93 45.55 0.86
1773 1792 8.027771 CAGTCCGGGAATAAGTGTACTTATATC 58.972 40.741 15.48 14.01 45.55 1.63
1774 1793 7.727186 AGTCCGGGAATAAGTGTACTTATATCA 59.273 37.037 15.48 0.00 45.55 2.15
1775 1794 8.027771 GTCCGGGAATAAGTGTACTTATATCAG 58.972 40.741 15.48 11.52 45.55 2.90
1776 1795 7.727186 TCCGGGAATAAGTGTACTTATATCAGT 59.273 37.037 15.48 2.55 45.55 3.41
1777 1796 8.027771 CCGGGAATAAGTGTACTTATATCAGTC 58.972 40.741 15.48 9.98 45.55 3.51
1778 1797 7.749570 CGGGAATAAGTGTACTTATATCAGTCG 59.250 40.741 15.48 14.07 45.55 4.18
1779 1798 8.574737 GGGAATAAGTGTACTTATATCAGTCGT 58.425 37.037 15.48 0.72 45.55 4.34
1780 1799 9.609950 GGAATAAGTGTACTTATATCAGTCGTC 57.390 37.037 15.48 8.32 45.55 4.20
1781 1800 9.609950 GAATAAGTGTACTTATATCAGTCGTCC 57.390 37.037 15.48 0.00 45.55 4.79
1782 1801 8.921353 ATAAGTGTACTTATATCAGTCGTCCT 57.079 34.615 13.99 0.00 44.74 3.85
1784 1803 8.743085 AAGTGTACTTATATCAGTCGTCCTAA 57.257 34.615 0.00 0.00 33.79 2.69
1785 1804 8.380743 AGTGTACTTATATCAGTCGTCCTAAG 57.619 38.462 0.00 0.00 0.00 2.18
1786 1805 7.992033 AGTGTACTTATATCAGTCGTCCTAAGT 59.008 37.037 0.00 0.00 34.69 2.24
1787 1806 8.281893 GTGTACTTATATCAGTCGTCCTAAGTC 58.718 40.741 0.00 0.00 33.05 3.01
1788 1807 7.989170 TGTACTTATATCAGTCGTCCTAAGTCA 59.011 37.037 0.00 0.00 33.05 3.41
1789 1808 7.876936 ACTTATATCAGTCGTCCTAAGTCAA 57.123 36.000 0.00 0.00 0.00 3.18
1790 1809 8.289939 ACTTATATCAGTCGTCCTAAGTCAAA 57.710 34.615 0.00 0.00 0.00 2.69
1791 1810 8.407064 ACTTATATCAGTCGTCCTAAGTCAAAG 58.593 37.037 0.00 0.00 0.00 2.77
1792 1811 6.777213 ATATCAGTCGTCCTAAGTCAAAGT 57.223 37.500 0.00 0.00 0.00 2.66
1793 1812 4.931661 TCAGTCGTCCTAAGTCAAAGTT 57.068 40.909 0.00 0.00 0.00 2.66
1794 1813 5.272283 TCAGTCGTCCTAAGTCAAAGTTT 57.728 39.130 0.00 0.00 0.00 2.66
1795 1814 5.667466 TCAGTCGTCCTAAGTCAAAGTTTT 58.333 37.500 0.00 0.00 0.00 2.43
1796 1815 6.808829 TCAGTCGTCCTAAGTCAAAGTTTTA 58.191 36.000 0.00 0.00 0.00 1.52
1797 1816 7.439381 TCAGTCGTCCTAAGTCAAAGTTTTAT 58.561 34.615 0.00 0.00 0.00 1.40
1798 1817 8.579006 TCAGTCGTCCTAAGTCAAAGTTTTATA 58.421 33.333 0.00 0.00 0.00 0.98
1799 1818 9.199982 CAGTCGTCCTAAGTCAAAGTTTTATAA 57.800 33.333 0.00 0.00 0.00 0.98
1800 1819 9.939802 AGTCGTCCTAAGTCAAAGTTTTATAAT 57.060 29.630 0.00 0.00 0.00 1.28
1839 1858 9.880157 ATTAGAAAAAGGTAATAACACTAGCGA 57.120 29.630 0.00 0.00 0.00 4.93
1840 1859 9.880157 TTAGAAAAAGGTAATAACACTAGCGAT 57.120 29.630 0.00 0.00 0.00 4.58
1841 1860 8.197988 AGAAAAAGGTAATAACACTAGCGATG 57.802 34.615 0.00 0.00 0.00 3.84
1842 1861 7.822822 AGAAAAAGGTAATAACACTAGCGATGT 59.177 33.333 0.00 0.00 0.00 3.06
1843 1862 7.535489 AAAAGGTAATAACACTAGCGATGTC 57.465 36.000 0.00 0.00 0.00 3.06
1844 1863 6.466885 AAGGTAATAACACTAGCGATGTCT 57.533 37.500 0.00 0.00 0.00 3.41
1845 1864 7.578310 AAGGTAATAACACTAGCGATGTCTA 57.422 36.000 0.00 0.00 0.00 2.59
1846 1865 7.578310 AGGTAATAACACTAGCGATGTCTAA 57.422 36.000 0.00 0.00 0.00 2.10
1847 1866 8.004087 AGGTAATAACACTAGCGATGTCTAAA 57.996 34.615 0.00 0.00 0.00 1.85
1848 1867 7.919621 AGGTAATAACACTAGCGATGTCTAAAC 59.080 37.037 0.00 0.00 0.00 2.01
1849 1868 7.919621 GGTAATAACACTAGCGATGTCTAAACT 59.080 37.037 0.00 0.00 0.00 2.66
1850 1869 9.298774 GTAATAACACTAGCGATGTCTAAACTT 57.701 33.333 0.00 0.00 0.00 2.66
1851 1870 7.757097 ATAACACTAGCGATGTCTAAACTTG 57.243 36.000 0.00 0.00 0.00 3.16
1852 1871 3.927142 ACACTAGCGATGTCTAAACTTGC 59.073 43.478 0.00 0.00 0.00 4.01
1853 1872 3.307242 CACTAGCGATGTCTAAACTTGCC 59.693 47.826 0.00 0.00 0.00 4.52
1854 1873 2.770164 AGCGATGTCTAAACTTGCCT 57.230 45.000 0.00 0.00 0.00 4.75
1855 1874 3.059352 AGCGATGTCTAAACTTGCCTT 57.941 42.857 0.00 0.00 0.00 4.35
1856 1875 3.003480 AGCGATGTCTAAACTTGCCTTC 58.997 45.455 0.00 0.00 0.00 3.46
1857 1876 2.222819 GCGATGTCTAAACTTGCCTTCG 60.223 50.000 0.00 0.00 0.00 3.79
1858 1877 3.250744 CGATGTCTAAACTTGCCTTCGA 58.749 45.455 0.00 0.00 0.00 3.71
1859 1878 3.865745 CGATGTCTAAACTTGCCTTCGAT 59.134 43.478 0.00 0.00 0.00 3.59
1860 1879 4.259970 CGATGTCTAAACTTGCCTTCGATG 60.260 45.833 0.00 0.00 0.00 3.84
1861 1880 4.002906 TGTCTAAACTTGCCTTCGATGT 57.997 40.909 0.00 0.00 0.00 3.06
1862 1881 4.385825 TGTCTAAACTTGCCTTCGATGTT 58.614 39.130 0.00 0.00 0.00 2.71
1863 1882 4.451096 TGTCTAAACTTGCCTTCGATGTTC 59.549 41.667 0.00 0.00 0.00 3.18
1864 1883 4.451096 GTCTAAACTTGCCTTCGATGTTCA 59.549 41.667 0.00 0.00 0.00 3.18
1865 1884 5.122396 GTCTAAACTTGCCTTCGATGTTCAT 59.878 40.000 0.00 0.00 0.00 2.57
1866 1885 4.853924 AAACTTGCCTTCGATGTTCATT 57.146 36.364 0.00 0.00 0.00 2.57
1867 1886 4.853924 AACTTGCCTTCGATGTTCATTT 57.146 36.364 0.00 0.00 0.00 2.32
1868 1887 4.853924 ACTTGCCTTCGATGTTCATTTT 57.146 36.364 0.00 0.00 0.00 1.82
1869 1888 4.549458 ACTTGCCTTCGATGTTCATTTTG 58.451 39.130 0.00 0.00 0.00 2.44
1870 1889 4.278170 ACTTGCCTTCGATGTTCATTTTGA 59.722 37.500 0.00 0.00 0.00 2.69
1871 1890 5.047802 ACTTGCCTTCGATGTTCATTTTGAT 60.048 36.000 0.00 0.00 0.00 2.57
1872 1891 4.735985 TGCCTTCGATGTTCATTTTGATG 58.264 39.130 0.00 0.00 0.00 3.07
1873 1892 4.218200 TGCCTTCGATGTTCATTTTGATGT 59.782 37.500 0.00 0.00 0.00 3.06
1874 1893 4.795278 GCCTTCGATGTTCATTTTGATGTC 59.205 41.667 0.00 0.00 0.00 3.06
1875 1894 5.619757 GCCTTCGATGTTCATTTTGATGTCA 60.620 40.000 0.00 0.00 0.00 3.58
1876 1895 6.025896 CCTTCGATGTTCATTTTGATGTCAG 58.974 40.000 0.00 0.00 0.00 3.51
1877 1896 6.128200 CCTTCGATGTTCATTTTGATGTCAGA 60.128 38.462 0.00 0.00 0.00 3.27
1878 1897 6.799926 TCGATGTTCATTTTGATGTCAGAA 57.200 33.333 0.00 0.00 0.00 3.02
1879 1898 6.602179 TCGATGTTCATTTTGATGTCAGAAC 58.398 36.000 0.00 0.00 36.73 3.01
1880 1899 6.427853 TCGATGTTCATTTTGATGTCAGAACT 59.572 34.615 11.61 2.05 37.03 3.01
1881 1900 7.041167 TCGATGTTCATTTTGATGTCAGAACTT 60.041 33.333 11.61 7.31 37.03 2.66
1882 1901 7.060289 CGATGTTCATTTTGATGTCAGAACTTG 59.940 37.037 11.61 0.00 37.03 3.16
1883 1902 7.332213 TGTTCATTTTGATGTCAGAACTTGA 57.668 32.000 11.61 1.85 37.03 3.02
1884 1903 7.770201 TGTTCATTTTGATGTCAGAACTTGAA 58.230 30.769 11.61 6.41 37.61 2.69
1885 1904 8.249638 TGTTCATTTTGATGTCAGAACTTGAAA 58.750 29.630 11.61 0.00 37.61 2.69
1886 1905 9.086336 GTTCATTTTGATGTCAGAACTTGAAAA 57.914 29.630 0.00 0.00 37.61 2.29
1887 1906 9.650539 TTCATTTTGATGTCAGAACTTGAAAAA 57.349 25.926 1.92 0.00 37.61 1.94
1888 1907 9.820725 TCATTTTGATGTCAGAACTTGAAAAAT 57.179 25.926 0.00 0.00 37.61 1.82
1892 1911 9.515020 TTTGATGTCAGAACTTGAAAAATACAC 57.485 29.630 0.00 0.00 37.61 2.90
1893 1912 7.648142 TGATGTCAGAACTTGAAAAATACACC 58.352 34.615 0.00 0.00 37.61 4.16
1894 1913 6.055231 TGTCAGAACTTGAAAAATACACCG 57.945 37.500 0.00 0.00 37.61 4.94
1895 1914 5.818336 TGTCAGAACTTGAAAAATACACCGA 59.182 36.000 0.00 0.00 37.61 4.69
1896 1915 6.316640 TGTCAGAACTTGAAAAATACACCGAA 59.683 34.615 0.00 0.00 37.61 4.30
1897 1916 6.631636 GTCAGAACTTGAAAAATACACCGAAC 59.368 38.462 0.00 0.00 37.61 3.95
1908 1927 1.670791 ACACCGAACCAAATCACGTT 58.329 45.000 0.00 0.00 0.00 3.99
1911 1930 3.626670 ACACCGAACCAAATCACGTTTAA 59.373 39.130 0.00 0.00 0.00 1.52
1942 1961 2.099141 TTGCTGACTAGACATGGCAC 57.901 50.000 0.00 0.00 0.00 5.01
1966 1994 1.337823 CCCACTTGTAGTGTCGGGAAG 60.338 57.143 6.13 0.00 44.50 3.46
2025 2088 6.901081 AAAAGATGCAAGGCTAAGTTTAGT 57.099 33.333 0.00 0.00 33.32 2.24
2026 2089 5.886960 AAGATGCAAGGCTAAGTTTAGTG 57.113 39.130 0.00 0.00 33.32 2.74
2027 2090 3.691609 AGATGCAAGGCTAAGTTTAGTGC 59.308 43.478 0.00 0.00 33.43 4.40
2028 2091 2.857483 TGCAAGGCTAAGTTTAGTGCA 58.143 42.857 10.03 10.03 37.70 4.57
2029 2092 2.552315 TGCAAGGCTAAGTTTAGTGCAC 59.448 45.455 9.40 9.40 36.19 4.57
2030 2093 2.552315 GCAAGGCTAAGTTTAGTGCACA 59.448 45.455 21.04 1.84 33.20 4.57
2031 2094 3.004315 GCAAGGCTAAGTTTAGTGCACAA 59.996 43.478 21.04 8.60 33.20 3.33
2032 2095 4.537015 CAAGGCTAAGTTTAGTGCACAAC 58.463 43.478 21.04 15.43 33.32 3.32
2033 2096 4.086706 AGGCTAAGTTTAGTGCACAACT 57.913 40.909 21.04 17.53 43.40 3.16
2034 2097 3.815401 AGGCTAAGTTTAGTGCACAACTG 59.185 43.478 21.04 10.67 40.26 3.16
2035 2098 3.813166 GGCTAAGTTTAGTGCACAACTGA 59.187 43.478 21.04 12.77 40.26 3.41
2036 2099 4.274950 GGCTAAGTTTAGTGCACAACTGAA 59.725 41.667 21.04 11.37 40.26 3.02
2037 2100 5.048713 GGCTAAGTTTAGTGCACAACTGAAT 60.049 40.000 21.04 8.54 40.26 2.57
2038 2101 6.148811 GGCTAAGTTTAGTGCACAACTGAATA 59.851 38.462 21.04 9.20 40.26 1.75
2039 2102 7.308348 GGCTAAGTTTAGTGCACAACTGAATAA 60.308 37.037 21.04 3.92 40.26 1.40
2040 2103 8.073768 GCTAAGTTTAGTGCACAACTGAATAAA 58.926 33.333 21.04 10.11 40.26 1.40
2041 2104 9.382244 CTAAGTTTAGTGCACAACTGAATAAAC 57.618 33.333 21.04 20.29 40.26 2.01
2042 2105 7.328277 AGTTTAGTGCACAACTGAATAAACA 57.672 32.000 25.11 1.21 40.26 2.83
2043 2106 7.767261 AGTTTAGTGCACAACTGAATAAACAA 58.233 30.769 25.11 0.66 40.26 2.83
2044 2107 8.247562 AGTTTAGTGCACAACTGAATAAACAAA 58.752 29.630 25.11 1.79 40.26 2.83
2045 2108 9.030301 GTTTAGTGCACAACTGAATAAACAAAT 57.970 29.630 21.04 0.00 40.26 2.32
2048 2111 8.801715 AGTGCACAACTGAATAAACAAATAAG 57.198 30.769 21.04 0.00 37.88 1.73
2049 2112 8.629158 AGTGCACAACTGAATAAACAAATAAGA 58.371 29.630 21.04 0.00 37.88 2.10
2050 2113 9.243637 GTGCACAACTGAATAAACAAATAAGAA 57.756 29.630 13.17 0.00 0.00 2.52
2073 2136 0.036671 AGGCTAAGTTTCGAACCGGG 60.037 55.000 6.32 0.00 0.00 5.73
2074 2137 0.037046 GGCTAAGTTTCGAACCGGGA 60.037 55.000 6.32 0.00 0.00 5.14
2091 2154 3.267597 GAACCAGTGCGCCGCAAAT 62.268 57.895 15.84 1.87 41.47 2.32
2099 2162 2.486504 CGCCGCAAATGACATGCT 59.513 55.556 0.00 0.00 41.64 3.79
2108 2171 3.803021 GCAAATGACATGCTCCAACCAAA 60.803 43.478 0.00 0.00 40.64 3.28
2115 2178 2.659063 GCTCCAACCAAATGCCCCC 61.659 63.158 0.00 0.00 0.00 5.40
2126 2189 0.111639 AATGCCCCCTGTACGTTTGT 59.888 50.000 0.00 0.00 0.00 2.83
2210 2364 5.241949 ACACCCATTTTTCGCATGTTAGTTA 59.758 36.000 0.00 0.00 0.00 2.24
2321 2475 9.872757 AGTGTTCACGTGTTTTAATAAAGTATG 57.127 29.630 16.51 0.00 0.00 2.39
2403 2561 1.571773 ATGGCCTAGTGTTCCCCCAC 61.572 60.000 3.32 0.00 35.53 4.61
2404 2562 2.228480 GGCCTAGTGTTCCCCCACA 61.228 63.158 0.00 0.00 37.82 4.17
2409 2567 3.089284 CCTAGTGTTCCCCCACAATTTC 58.911 50.000 0.00 0.00 37.82 2.17
2413 2571 4.746466 AGTGTTCCCCCACAATTTCATAA 58.254 39.130 0.00 0.00 37.82 1.90
2414 2572 4.526650 AGTGTTCCCCCACAATTTCATAAC 59.473 41.667 0.00 0.00 37.82 1.89
2415 2573 4.282195 GTGTTCCCCCACAATTTCATAACA 59.718 41.667 0.00 0.00 35.38 2.41
2416 2574 4.901849 TGTTCCCCCACAATTTCATAACAA 59.098 37.500 0.00 0.00 0.00 2.83
2417 2575 5.545723 TGTTCCCCCACAATTTCATAACAAT 59.454 36.000 0.00 0.00 0.00 2.71
2418 2576 5.674052 TCCCCCACAATTTCATAACAATG 57.326 39.130 0.00 0.00 0.00 2.82
2419 2577 4.469227 TCCCCCACAATTTCATAACAATGG 59.531 41.667 0.00 0.00 0.00 3.16
2420 2578 4.190772 CCCCACAATTTCATAACAATGGC 58.809 43.478 0.00 0.00 0.00 4.40
2421 2579 4.190772 CCCACAATTTCATAACAATGGCC 58.809 43.478 0.00 0.00 0.00 5.36
2422 2580 4.190772 CCACAATTTCATAACAATGGCCC 58.809 43.478 0.00 0.00 0.00 5.80
2423 2581 3.864583 CACAATTTCATAACAATGGCCCG 59.135 43.478 0.00 0.00 0.00 6.13
2424 2582 3.766591 ACAATTTCATAACAATGGCCCGA 59.233 39.130 0.00 0.00 0.00 5.14
2425 2583 4.221703 ACAATTTCATAACAATGGCCCGAA 59.778 37.500 0.00 0.00 0.00 4.30
2426 2584 3.859411 TTTCATAACAATGGCCCGAAC 57.141 42.857 0.00 0.00 0.00 3.95
2427 2585 2.799126 TCATAACAATGGCCCGAACT 57.201 45.000 0.00 0.00 0.00 3.01
2428 2586 2.639065 TCATAACAATGGCCCGAACTC 58.361 47.619 0.00 0.00 0.00 3.01
2429 2587 1.330521 CATAACAATGGCCCGAACTCG 59.669 52.381 0.00 0.00 39.44 4.18
2430 2588 0.322322 TAACAATGGCCCGAACTCGT 59.678 50.000 0.00 0.00 37.74 4.18
2431 2589 0.322322 AACAATGGCCCGAACTCGTA 59.678 50.000 0.00 0.00 37.74 3.43
2432 2590 0.322322 ACAATGGCCCGAACTCGTAA 59.678 50.000 0.00 0.00 37.74 3.18
2433 2591 1.270947 ACAATGGCCCGAACTCGTAAA 60.271 47.619 0.00 0.00 37.74 2.01
2434 2592 1.807742 CAATGGCCCGAACTCGTAAAA 59.192 47.619 0.00 0.00 37.74 1.52
2435 2593 2.188062 ATGGCCCGAACTCGTAAAAA 57.812 45.000 0.00 0.00 37.74 1.94
2436 2594 1.228533 TGGCCCGAACTCGTAAAAAC 58.771 50.000 0.00 0.00 37.74 2.43
2437 2595 0.518636 GGCCCGAACTCGTAAAAACC 59.481 55.000 0.00 0.00 37.74 3.27
2438 2596 0.164432 GCCCGAACTCGTAAAAACCG 59.836 55.000 0.00 0.00 37.74 4.44
2439 2597 1.782044 CCCGAACTCGTAAAAACCGA 58.218 50.000 0.00 0.00 37.74 4.69
2445 2603 1.504359 CTCGTAAAAACCGAGTGCCA 58.496 50.000 1.87 0.00 45.09 4.92
2446 2604 1.193874 CTCGTAAAAACCGAGTGCCAC 59.806 52.381 1.87 0.00 45.09 5.01
2447 2605 0.938713 CGTAAAAACCGAGTGCCACA 59.061 50.000 0.00 0.00 0.00 4.17
2448 2606 1.333435 CGTAAAAACCGAGTGCCACAC 60.333 52.381 0.00 0.00 34.10 3.82
2450 2608 1.470051 AAAAACCGAGTGCCACACTT 58.530 45.000 1.15 0.00 45.44 3.16
2451 2609 0.738389 AAAACCGAGTGCCACACTTG 59.262 50.000 7.83 7.83 45.44 3.16
2452 2610 1.724582 AAACCGAGTGCCACACTTGC 61.725 55.000 9.12 0.00 45.44 4.01
2453 2611 3.716006 CCGAGTGCCACACTTGCG 61.716 66.667 9.12 5.81 45.44 4.85
2454 2612 2.967076 CGAGTGCCACACTTGCGT 60.967 61.111 1.15 0.00 45.44 5.24
2455 2613 2.939022 GAGTGCCACACTTGCGTC 59.061 61.111 1.15 0.00 45.44 5.19
2456 2614 2.943345 GAGTGCCACACTTGCGTCG 61.943 63.158 1.15 0.00 45.44 5.12
2457 2615 3.269347 GTGCCACACTTGCGTCGT 61.269 61.111 0.00 0.00 0.00 4.34
2458 2616 1.952133 GTGCCACACTTGCGTCGTA 60.952 57.895 0.00 0.00 0.00 3.43
2459 2617 1.663388 TGCCACACTTGCGTCGTAG 60.663 57.895 0.00 0.00 0.00 3.51
2460 2618 3.011760 GCCACACTTGCGTCGTAGC 62.012 63.158 0.00 0.00 37.71 3.58
2461 2619 1.372997 CCACACTTGCGTCGTAGCT 60.373 57.895 0.00 0.00 38.13 3.32
2462 2620 0.109458 CCACACTTGCGTCGTAGCTA 60.109 55.000 0.00 0.00 38.13 3.32
2463 2621 1.260206 CACACTTGCGTCGTAGCTAG 58.740 55.000 12.43 12.43 43.68 3.42
2464 2622 1.135774 CACACTTGCGTCGTAGCTAGA 60.136 52.381 18.25 0.00 41.33 2.43
2465 2623 1.135746 ACACTTGCGTCGTAGCTAGAC 60.136 52.381 18.25 3.55 41.33 2.59
2466 2624 1.130749 CACTTGCGTCGTAGCTAGACT 59.869 52.381 18.25 0.00 41.33 3.24
2467 2625 1.397692 ACTTGCGTCGTAGCTAGACTC 59.602 52.381 18.25 11.54 41.33 3.36
2468 2626 0.731417 TTGCGTCGTAGCTAGACTCC 59.269 55.000 16.31 10.39 36.53 3.85
2469 2627 1.276250 GCGTCGTAGCTAGACTCCG 59.724 63.158 16.31 7.74 36.53 4.63
2470 2628 1.276250 CGTCGTAGCTAGACTCCGC 59.724 63.158 16.31 4.41 36.53 5.54
2471 2629 1.648174 GTCGTAGCTAGACTCCGCC 59.352 63.158 13.09 0.00 35.84 6.13
2472 2630 1.525535 TCGTAGCTAGACTCCGCCC 60.526 63.158 0.00 0.00 0.00 6.13
2473 2631 2.553727 CGTAGCTAGACTCCGCCCC 61.554 68.421 0.00 0.00 0.00 5.80
2474 2632 1.152715 GTAGCTAGACTCCGCCCCT 60.153 63.158 0.00 0.00 0.00 4.79
2475 2633 0.756070 GTAGCTAGACTCCGCCCCTT 60.756 60.000 0.00 0.00 0.00 3.95
2476 2634 0.755698 TAGCTAGACTCCGCCCCTTG 60.756 60.000 0.00 0.00 0.00 3.61
2477 2635 2.359967 GCTAGACTCCGCCCCTTGT 61.360 63.158 0.00 0.00 0.00 3.16
2478 2636 1.900545 GCTAGACTCCGCCCCTTGTT 61.901 60.000 0.00 0.00 0.00 2.83
2479 2637 0.175989 CTAGACTCCGCCCCTTGTTC 59.824 60.000 0.00 0.00 0.00 3.18
2480 2638 1.601419 TAGACTCCGCCCCTTGTTCG 61.601 60.000 0.00 0.00 0.00 3.95
2481 2639 3.236003 GACTCCGCCCCTTGTTCGT 62.236 63.158 0.00 0.00 0.00 3.85
2482 2640 1.880819 GACTCCGCCCCTTGTTCGTA 61.881 60.000 0.00 0.00 0.00 3.43
2483 2641 1.262640 ACTCCGCCCCTTGTTCGTAT 61.263 55.000 0.00 0.00 0.00 3.06
2484 2642 0.529992 CTCCGCCCCTTGTTCGTATC 60.530 60.000 0.00 0.00 0.00 2.24
2485 2643 1.523032 CCGCCCCTTGTTCGTATCC 60.523 63.158 0.00 0.00 0.00 2.59
2486 2644 1.520666 CGCCCCTTGTTCGTATCCT 59.479 57.895 0.00 0.00 0.00 3.24
2487 2645 0.107848 CGCCCCTTGTTCGTATCCTT 60.108 55.000 0.00 0.00 0.00 3.36
2488 2646 1.137479 CGCCCCTTGTTCGTATCCTTA 59.863 52.381 0.00 0.00 0.00 2.69
2489 2647 2.802057 CGCCCCTTGTTCGTATCCTTAG 60.802 54.545 0.00 0.00 0.00 2.18
2490 2648 2.169978 GCCCCTTGTTCGTATCCTTAGT 59.830 50.000 0.00 0.00 0.00 2.24
2491 2649 3.385755 GCCCCTTGTTCGTATCCTTAGTA 59.614 47.826 0.00 0.00 0.00 1.82
2492 2650 4.738839 GCCCCTTGTTCGTATCCTTAGTAC 60.739 50.000 0.00 0.00 0.00 2.73
2493 2651 4.648307 CCCCTTGTTCGTATCCTTAGTACT 59.352 45.833 0.00 0.00 0.00 2.73
2494 2652 5.221204 CCCCTTGTTCGTATCCTTAGTACTC 60.221 48.000 0.00 0.00 0.00 2.59
2495 2653 5.359009 CCCTTGTTCGTATCCTTAGTACTCA 59.641 44.000 0.00 0.00 0.00 3.41
2496 2654 6.040616 CCCTTGTTCGTATCCTTAGTACTCAT 59.959 42.308 0.00 0.00 0.00 2.90
2497 2655 7.417570 CCCTTGTTCGTATCCTTAGTACTCATT 60.418 40.741 0.00 0.00 0.00 2.57
2498 2656 7.435488 CCTTGTTCGTATCCTTAGTACTCATTG 59.565 40.741 0.00 0.00 0.00 2.82
2499 2657 7.400599 TGTTCGTATCCTTAGTACTCATTGT 57.599 36.000 0.00 0.00 0.00 2.71
2500 2658 7.478322 TGTTCGTATCCTTAGTACTCATTGTC 58.522 38.462 0.00 0.00 0.00 3.18
2501 2659 7.121611 TGTTCGTATCCTTAGTACTCATTGTCA 59.878 37.037 0.00 0.00 0.00 3.58
2502 2660 7.260558 TCGTATCCTTAGTACTCATTGTCAG 57.739 40.000 0.00 0.00 0.00 3.51
2503 2661 6.262496 TCGTATCCTTAGTACTCATTGTCAGG 59.738 42.308 0.00 0.00 0.00 3.86
2504 2662 6.262496 CGTATCCTTAGTACTCATTGTCAGGA 59.738 42.308 0.00 0.84 33.72 3.86
2505 2663 7.040340 CGTATCCTTAGTACTCATTGTCAGGAT 60.040 40.741 0.00 8.09 41.72 3.24
2506 2664 6.716934 TCCTTAGTACTCATTGTCAGGATC 57.283 41.667 0.00 0.00 0.00 3.36
2507 2665 5.299531 TCCTTAGTACTCATTGTCAGGATCG 59.700 44.000 0.00 0.00 0.00 3.69
2508 2666 5.067936 CCTTAGTACTCATTGTCAGGATCGT 59.932 44.000 0.00 0.00 0.00 3.73
2509 2667 6.405953 CCTTAGTACTCATTGTCAGGATCGTT 60.406 42.308 0.00 0.00 0.00 3.85
2510 2668 4.748892 AGTACTCATTGTCAGGATCGTTG 58.251 43.478 0.00 0.00 0.00 4.10
2511 2669 2.350522 ACTCATTGTCAGGATCGTTGC 58.649 47.619 0.00 0.00 0.00 4.17
2512 2670 1.667724 CTCATTGTCAGGATCGTTGCC 59.332 52.381 0.00 0.00 0.00 4.52
2513 2671 1.278985 TCATTGTCAGGATCGTTGCCT 59.721 47.619 0.00 0.00 35.75 4.75
2514 2672 1.667724 CATTGTCAGGATCGTTGCCTC 59.332 52.381 0.00 0.00 32.12 4.70
2515 2673 0.389817 TTGTCAGGATCGTTGCCTCG 60.390 55.000 0.00 0.00 32.12 4.63
2516 2674 1.248101 TGTCAGGATCGTTGCCTCGA 61.248 55.000 3.04 3.04 43.86 4.04
2517 2675 0.802607 GTCAGGATCGTTGCCTCGAC 60.803 60.000 2.63 0.00 42.56 4.20
2518 2676 1.215382 CAGGATCGTTGCCTCGACA 59.785 57.895 2.63 0.00 42.56 4.35
2519 2677 0.803768 CAGGATCGTTGCCTCGACAG 60.804 60.000 2.63 0.00 42.56 3.51
2520 2678 1.215647 GGATCGTTGCCTCGACAGT 59.784 57.895 2.63 0.00 42.56 3.55
2521 2679 0.389948 GGATCGTTGCCTCGACAGTT 60.390 55.000 2.63 0.00 42.56 3.16
2522 2680 0.716108 GATCGTTGCCTCGACAGTTG 59.284 55.000 2.63 0.00 42.56 3.16
2523 2681 0.670546 ATCGTTGCCTCGACAGTTGG 60.671 55.000 2.63 0.00 42.56 3.77
2524 2682 2.946762 GTTGCCTCGACAGTTGGC 59.053 61.111 5.71 5.71 46.26 4.52
2531 2689 3.041940 CGACAGTTGGCGTCCACC 61.042 66.667 0.00 0.00 42.66 4.61
2532 2690 2.110213 GACAGTTGGCGTCCACCA 59.890 61.111 0.00 0.00 38.16 4.17
2533 2691 1.302511 GACAGTTGGCGTCCACCAT 60.303 57.895 0.00 0.00 40.13 3.55
2534 2692 1.577328 GACAGTTGGCGTCCACCATG 61.577 60.000 0.00 0.00 40.13 3.66
2535 2693 2.034066 AGTTGGCGTCCACCATGG 59.966 61.111 11.19 11.19 40.13 3.66
2536 2694 3.061848 GTTGGCGTCCACCATGGG 61.062 66.667 18.09 4.89 40.13 4.00
2537 2695 3.253061 TTGGCGTCCACCATGGGA 61.253 61.111 18.09 0.90 40.13 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 4.871933 AGGGGCAAACAAATAGTCAAAG 57.128 40.909 0.00 0.00 0.00 2.77
189 191 2.884639 GGCCCGATGTATTTAAGCACAT 59.115 45.455 0.00 4.24 38.08 3.21
234 237 3.074675 TCCCGCTAGCCAAAAATACAA 57.925 42.857 9.66 0.00 0.00 2.41
312 315 5.011090 AGTCTTCTGTTCATTATAGCGCA 57.989 39.130 11.47 0.00 0.00 6.09
389 403 1.526686 CTGTGCACTCAACTGGGCA 60.527 57.895 19.41 0.00 0.00 5.36
453 467 7.993183 TCTATTTTCAACCTTGAGTGAGTTCTT 59.007 33.333 0.00 0.00 38.61 2.52
454 468 7.442666 GTCTATTTTCAACCTTGAGTGAGTTCT 59.557 37.037 0.00 0.00 38.61 3.01
490 504 3.985279 TGAAAATCGGTACACTGAACTCG 59.015 43.478 0.00 0.00 34.49 4.18
502 516 8.082242 CCTAAACTTCAAATTCTGAAAATCGGT 58.918 33.333 0.00 0.00 43.54 4.69
504 518 8.082242 ACCCTAAACTTCAAATTCTGAAAATCG 58.918 33.333 0.00 0.00 43.54 3.34
591 605 1.065126 CCTAGAGTGCCCCTTTTGGAG 60.065 57.143 0.00 0.00 44.07 3.86
599 613 3.541713 CCTCGCCTAGAGTGCCCC 61.542 72.222 0.00 0.00 45.44 5.80
611 625 0.944386 TCTGCAGTGTTTTTCCTCGC 59.056 50.000 14.67 0.00 0.00 5.03
890 907 3.958147 CTCGGTGCGGTGCCTTGAT 62.958 63.158 0.00 0.00 0.00 2.57
891 908 4.680237 CTCGGTGCGGTGCCTTGA 62.680 66.667 0.00 0.00 0.00 3.02
892 909 4.988598 ACTCGGTGCGGTGCCTTG 62.989 66.667 0.00 0.00 0.00 3.61
893 910 4.250305 AACTCGGTGCGGTGCCTT 62.250 61.111 0.00 0.00 0.00 4.35
943 960 3.804325 ACGACGATAATCAGGCTTTGATG 59.196 43.478 0.00 0.00 45.82 3.07
954 971 2.141517 TCGAGGGAGACGACGATAATC 58.858 52.381 0.00 0.00 34.68 1.75
955 972 2.251409 TCGAGGGAGACGACGATAAT 57.749 50.000 0.00 0.00 34.68 1.28
975 992 1.323271 GCTCAGGTGGTGGAGATCGA 61.323 60.000 0.00 0.00 32.87 3.59
977 994 0.463620 GAGCTCAGGTGGTGGAGATC 59.536 60.000 9.40 0.00 39.09 2.75
978 995 1.326213 CGAGCTCAGGTGGTGGAGAT 61.326 60.000 15.40 0.00 32.87 2.75
979 996 1.979155 CGAGCTCAGGTGGTGGAGA 60.979 63.158 15.40 0.00 32.87 3.71
987 1004 4.479993 GCCATGGCGAGCTCAGGT 62.480 66.667 23.48 0.00 0.00 4.00
1534 1551 0.528684 CCGTGCAGCTCTAGTTAGGC 60.529 60.000 0.00 0.00 0.00 3.93
1560 1577 1.862815 GCACGACGCGGAAGTACATAT 60.863 52.381 12.47 0.00 0.00 1.78
1636 1654 5.434408 TCCGCAGATCAAACTAGAGTACTA 58.566 41.667 0.00 0.00 0.00 1.82
1637 1655 4.270834 TCCGCAGATCAAACTAGAGTACT 58.729 43.478 0.00 0.00 0.00 2.73
1638 1656 4.335874 TCTCCGCAGATCAAACTAGAGTAC 59.664 45.833 0.00 0.00 0.00 2.73
1649 1668 6.265422 TCTTTATTCTACATCTCCGCAGATCA 59.735 38.462 0.00 0.00 37.25 2.92
1712 1731 1.717194 TTTGAGCATCCGTCGTTACC 58.283 50.000 0.00 0.00 0.00 2.85
1723 1742 6.156949 TGAGGGAGTAGAAAGTATTTGAGCAT 59.843 38.462 0.00 0.00 39.27 3.79
1731 1750 4.208746 CGGACTGAGGGAGTAGAAAGTAT 58.791 47.826 0.00 0.00 33.83 2.12
1732 1751 3.618351 CGGACTGAGGGAGTAGAAAGTA 58.382 50.000 0.00 0.00 33.83 2.24
1733 1752 2.448453 CGGACTGAGGGAGTAGAAAGT 58.552 52.381 0.00 0.00 33.83 2.66
1734 1753 1.751924 CCGGACTGAGGGAGTAGAAAG 59.248 57.143 0.00 0.00 33.83 2.62
1735 1754 1.848652 CCGGACTGAGGGAGTAGAAA 58.151 55.000 0.00 0.00 33.83 2.52
1736 1755 3.590643 CCGGACTGAGGGAGTAGAA 57.409 57.895 0.00 0.00 33.83 2.10
1744 1763 1.831736 ACACTTATTCCCGGACTGAGG 59.168 52.381 0.73 0.00 0.00 3.86
1745 1764 3.700038 AGTACACTTATTCCCGGACTGAG 59.300 47.826 0.73 0.00 0.00 3.35
1746 1765 3.705051 AGTACACTTATTCCCGGACTGA 58.295 45.455 0.73 0.00 0.00 3.41
1747 1766 4.467198 AAGTACACTTATTCCCGGACTG 57.533 45.455 0.73 0.00 33.79 3.51
1748 1767 7.727186 TGATATAAGTACACTTATTCCCGGACT 59.273 37.037 17.36 0.00 44.33 3.85
1749 1768 7.889469 TGATATAAGTACACTTATTCCCGGAC 58.111 38.462 17.36 0.00 44.33 4.79
1750 1769 7.727186 ACTGATATAAGTACACTTATTCCCGGA 59.273 37.037 17.36 2.19 44.33 5.14
1751 1770 7.893658 ACTGATATAAGTACACTTATTCCCGG 58.106 38.462 17.36 13.76 44.33 5.73
1752 1771 7.749570 CGACTGATATAAGTACACTTATTCCCG 59.250 40.741 17.36 13.24 44.33 5.14
1753 1772 8.574737 ACGACTGATATAAGTACACTTATTCCC 58.425 37.037 17.36 9.33 44.33 3.97
1754 1773 9.609950 GACGACTGATATAAGTACACTTATTCC 57.390 37.037 17.36 11.21 44.33 3.01
1755 1774 9.609950 GGACGACTGATATAAGTACACTTATTC 57.390 37.037 17.36 14.45 44.33 1.75
1756 1775 9.352191 AGGACGACTGATATAAGTACACTTATT 57.648 33.333 17.36 7.80 44.33 1.40
1758 1777 9.836864 TTAGGACGACTGATATAAGTACACTTA 57.163 33.333 4.39 4.39 42.04 2.24
1759 1778 8.743085 TTAGGACGACTGATATAAGTACACTT 57.257 34.615 0.00 0.00 39.85 3.16
1760 1779 7.992033 ACTTAGGACGACTGATATAAGTACACT 59.008 37.037 0.00 0.00 33.06 3.55
1761 1780 8.152309 ACTTAGGACGACTGATATAAGTACAC 57.848 38.462 0.00 0.00 33.06 2.90
1762 1781 7.989170 TGACTTAGGACGACTGATATAAGTACA 59.011 37.037 0.00 0.00 34.52 2.90
1763 1782 8.375608 TGACTTAGGACGACTGATATAAGTAC 57.624 38.462 0.00 0.00 34.52 2.73
1764 1783 8.969260 TTGACTTAGGACGACTGATATAAGTA 57.031 34.615 0.00 0.00 34.52 2.24
1765 1784 7.876936 TTGACTTAGGACGACTGATATAAGT 57.123 36.000 0.00 0.00 36.46 2.24
1766 1785 8.407064 ACTTTGACTTAGGACGACTGATATAAG 58.593 37.037 0.00 0.00 0.00 1.73
1767 1786 8.289939 ACTTTGACTTAGGACGACTGATATAA 57.710 34.615 0.00 0.00 0.00 0.98
1768 1787 7.876936 ACTTTGACTTAGGACGACTGATATA 57.123 36.000 0.00 0.00 0.00 0.86
1769 1788 6.777213 ACTTTGACTTAGGACGACTGATAT 57.223 37.500 0.00 0.00 0.00 1.63
1770 1789 6.585695 AACTTTGACTTAGGACGACTGATA 57.414 37.500 0.00 0.00 0.00 2.15
1771 1790 5.470047 AACTTTGACTTAGGACGACTGAT 57.530 39.130 0.00 0.00 0.00 2.90
1772 1791 4.931661 AACTTTGACTTAGGACGACTGA 57.068 40.909 0.00 0.00 0.00 3.41
1773 1792 5.986004 AAAACTTTGACTTAGGACGACTG 57.014 39.130 0.00 0.00 0.00 3.51
1774 1793 9.939802 ATTATAAAACTTTGACTTAGGACGACT 57.060 29.630 0.00 0.00 0.00 4.18
1813 1832 9.880157 TCGCTAGTGTTATTACCTTTTTCTAAT 57.120 29.630 2.66 0.00 0.00 1.73
1814 1833 9.880157 ATCGCTAGTGTTATTACCTTTTTCTAA 57.120 29.630 2.66 0.00 0.00 2.10
1815 1834 9.309516 CATCGCTAGTGTTATTACCTTTTTCTA 57.690 33.333 2.66 0.00 0.00 2.10
1816 1835 7.822822 ACATCGCTAGTGTTATTACCTTTTTCT 59.177 33.333 2.66 0.00 0.00 2.52
1817 1836 7.971455 ACATCGCTAGTGTTATTACCTTTTTC 58.029 34.615 2.66 0.00 0.00 2.29
1818 1837 7.822822 AGACATCGCTAGTGTTATTACCTTTTT 59.177 33.333 2.66 0.00 0.00 1.94
1819 1838 7.328737 AGACATCGCTAGTGTTATTACCTTTT 58.671 34.615 2.66 0.00 0.00 2.27
1820 1839 6.875076 AGACATCGCTAGTGTTATTACCTTT 58.125 36.000 2.66 0.00 0.00 3.11
1821 1840 6.466885 AGACATCGCTAGTGTTATTACCTT 57.533 37.500 2.66 0.00 0.00 3.50
1822 1841 7.578310 TTAGACATCGCTAGTGTTATTACCT 57.422 36.000 2.66 0.00 0.00 3.08
1823 1842 7.919621 AGTTTAGACATCGCTAGTGTTATTACC 59.080 37.037 2.66 0.00 0.00 2.85
1824 1843 8.853469 AGTTTAGACATCGCTAGTGTTATTAC 57.147 34.615 2.66 0.00 0.00 1.89
1825 1844 9.297586 CAAGTTTAGACATCGCTAGTGTTATTA 57.702 33.333 2.66 0.00 0.00 0.98
1826 1845 7.201530 GCAAGTTTAGACATCGCTAGTGTTATT 60.202 37.037 2.66 0.00 0.00 1.40
1827 1846 6.255887 GCAAGTTTAGACATCGCTAGTGTTAT 59.744 38.462 2.66 0.00 0.00 1.89
1828 1847 5.575606 GCAAGTTTAGACATCGCTAGTGTTA 59.424 40.000 2.66 0.00 0.00 2.41
1829 1848 4.389077 GCAAGTTTAGACATCGCTAGTGTT 59.611 41.667 2.66 0.00 0.00 3.32
1830 1849 3.927142 GCAAGTTTAGACATCGCTAGTGT 59.073 43.478 2.66 0.00 0.00 3.55
1831 1850 3.307242 GGCAAGTTTAGACATCGCTAGTG 59.693 47.826 0.00 0.00 0.00 2.74
1832 1851 3.195825 AGGCAAGTTTAGACATCGCTAGT 59.804 43.478 0.00 0.00 0.00 2.57
1833 1852 3.786635 AGGCAAGTTTAGACATCGCTAG 58.213 45.455 0.00 0.00 0.00 3.42
1834 1853 3.887621 AGGCAAGTTTAGACATCGCTA 57.112 42.857 0.00 0.00 0.00 4.26
1835 1854 2.770164 AGGCAAGTTTAGACATCGCT 57.230 45.000 0.00 0.00 0.00 4.93
1836 1855 2.222819 CGAAGGCAAGTTTAGACATCGC 60.223 50.000 0.00 0.00 0.00 4.58
1837 1856 3.250744 TCGAAGGCAAGTTTAGACATCG 58.749 45.455 0.00 0.00 0.00 3.84
1838 1857 4.631813 ACATCGAAGGCAAGTTTAGACATC 59.368 41.667 0.00 0.00 0.00 3.06
1839 1858 4.579869 ACATCGAAGGCAAGTTTAGACAT 58.420 39.130 0.00 0.00 0.00 3.06
1840 1859 4.002906 ACATCGAAGGCAAGTTTAGACA 57.997 40.909 0.00 0.00 0.00 3.41
1841 1860 4.451096 TGAACATCGAAGGCAAGTTTAGAC 59.549 41.667 0.00 0.00 0.00 2.59
1842 1861 4.637276 TGAACATCGAAGGCAAGTTTAGA 58.363 39.130 0.00 0.00 0.00 2.10
1843 1862 5.551760 ATGAACATCGAAGGCAAGTTTAG 57.448 39.130 0.00 0.00 0.00 1.85
1844 1863 5.957842 AATGAACATCGAAGGCAAGTTTA 57.042 34.783 0.00 0.00 0.00 2.01
1845 1864 4.853924 AATGAACATCGAAGGCAAGTTT 57.146 36.364 0.00 0.00 0.00 2.66
1846 1865 4.853924 AAATGAACATCGAAGGCAAGTT 57.146 36.364 0.00 0.00 0.00 2.66
1847 1866 4.278170 TCAAAATGAACATCGAAGGCAAGT 59.722 37.500 0.00 0.00 0.00 3.16
1848 1867 4.797471 TCAAAATGAACATCGAAGGCAAG 58.203 39.130 0.00 0.00 0.00 4.01
1849 1868 4.844998 TCAAAATGAACATCGAAGGCAA 57.155 36.364 0.00 0.00 0.00 4.52
1850 1869 4.218200 ACATCAAAATGAACATCGAAGGCA 59.782 37.500 0.00 0.00 36.67 4.75
1851 1870 4.737054 ACATCAAAATGAACATCGAAGGC 58.263 39.130 0.00 0.00 36.67 4.35
1852 1871 5.941733 TGACATCAAAATGAACATCGAAGG 58.058 37.500 0.00 0.00 36.67 3.46
1853 1872 6.834876 TCTGACATCAAAATGAACATCGAAG 58.165 36.000 0.00 0.00 36.67 3.79
1854 1873 6.799926 TCTGACATCAAAATGAACATCGAA 57.200 33.333 0.00 0.00 36.67 3.71
1855 1874 6.427853 AGTTCTGACATCAAAATGAACATCGA 59.572 34.615 11.89 0.00 37.03 3.59
1856 1875 6.605849 AGTTCTGACATCAAAATGAACATCG 58.394 36.000 11.89 0.00 37.03 3.84
1857 1876 8.077991 TCAAGTTCTGACATCAAAATGAACATC 58.922 33.333 11.89 0.00 37.03 3.06
1858 1877 7.944061 TCAAGTTCTGACATCAAAATGAACAT 58.056 30.769 11.89 1.10 37.03 2.71
1859 1878 7.332213 TCAAGTTCTGACATCAAAATGAACA 57.668 32.000 11.89 0.00 37.03 3.18
1860 1879 8.633075 TTTCAAGTTCTGACATCAAAATGAAC 57.367 30.769 0.00 0.00 36.67 3.18
1861 1880 9.650539 TTTTTCAAGTTCTGACATCAAAATGAA 57.349 25.926 0.00 0.00 36.67 2.57
1862 1881 9.820725 ATTTTTCAAGTTCTGACATCAAAATGA 57.179 25.926 0.00 0.00 32.92 2.57
1866 1885 9.515020 GTGTATTTTTCAAGTTCTGACATCAAA 57.485 29.630 0.00 0.00 32.21 2.69
1867 1886 8.134895 GGTGTATTTTTCAAGTTCTGACATCAA 58.865 33.333 0.00 0.00 32.21 2.57
1868 1887 7.519809 CGGTGTATTTTTCAAGTTCTGACATCA 60.520 37.037 0.00 0.00 32.21 3.07
1869 1888 6.797033 CGGTGTATTTTTCAAGTTCTGACATC 59.203 38.462 0.00 0.00 32.21 3.06
1870 1889 6.485313 TCGGTGTATTTTTCAAGTTCTGACAT 59.515 34.615 0.00 0.00 32.21 3.06
1871 1890 5.818336 TCGGTGTATTTTTCAAGTTCTGACA 59.182 36.000 0.00 0.00 32.21 3.58
1872 1891 6.295039 TCGGTGTATTTTTCAAGTTCTGAC 57.705 37.500 0.00 0.00 32.21 3.51
1873 1892 6.238538 GGTTCGGTGTATTTTTCAAGTTCTGA 60.239 38.462 0.00 0.00 0.00 3.27
1874 1893 5.912955 GGTTCGGTGTATTTTTCAAGTTCTG 59.087 40.000 0.00 0.00 0.00 3.02
1875 1894 5.591067 TGGTTCGGTGTATTTTTCAAGTTCT 59.409 36.000 0.00 0.00 0.00 3.01
1876 1895 5.823353 TGGTTCGGTGTATTTTTCAAGTTC 58.177 37.500 0.00 0.00 0.00 3.01
1877 1896 5.838531 TGGTTCGGTGTATTTTTCAAGTT 57.161 34.783 0.00 0.00 0.00 2.66
1878 1897 5.838531 TTGGTTCGGTGTATTTTTCAAGT 57.161 34.783 0.00 0.00 0.00 3.16
1879 1898 6.920758 TGATTTGGTTCGGTGTATTTTTCAAG 59.079 34.615 0.00 0.00 0.00 3.02
1880 1899 6.697892 GTGATTTGGTTCGGTGTATTTTTCAA 59.302 34.615 0.00 0.00 0.00 2.69
1881 1900 6.210078 GTGATTTGGTTCGGTGTATTTTTCA 58.790 36.000 0.00 0.00 0.00 2.69
1882 1901 5.341196 CGTGATTTGGTTCGGTGTATTTTTC 59.659 40.000 0.00 0.00 0.00 2.29
1883 1902 5.216648 CGTGATTTGGTTCGGTGTATTTTT 58.783 37.500 0.00 0.00 0.00 1.94
1884 1903 4.276431 ACGTGATTTGGTTCGGTGTATTTT 59.724 37.500 0.00 0.00 0.00 1.82
1885 1904 3.816523 ACGTGATTTGGTTCGGTGTATTT 59.183 39.130 0.00 0.00 0.00 1.40
1886 1905 3.404899 ACGTGATTTGGTTCGGTGTATT 58.595 40.909 0.00 0.00 0.00 1.89
1887 1906 3.048337 ACGTGATTTGGTTCGGTGTAT 57.952 42.857 0.00 0.00 0.00 2.29
1888 1907 2.529780 ACGTGATTTGGTTCGGTGTA 57.470 45.000 0.00 0.00 0.00 2.90
1889 1908 1.670791 AACGTGATTTGGTTCGGTGT 58.329 45.000 0.00 0.00 0.00 4.16
1890 1909 2.766970 AAACGTGATTTGGTTCGGTG 57.233 45.000 0.00 0.00 0.00 4.94
1891 1910 4.897025 TTTAAACGTGATTTGGTTCGGT 57.103 36.364 0.00 0.00 0.00 4.69
1892 1911 7.024768 ACATATTTAAACGTGATTTGGTTCGG 58.975 34.615 8.25 0.00 0.00 4.30
1893 1912 9.710979 ATACATATTTAAACGTGATTTGGTTCG 57.289 29.630 8.25 0.00 0.00 3.95
1966 1994 1.674057 CACTGACAGGTGGGACTCC 59.326 63.158 7.51 0.00 43.30 3.85
2006 2069 3.440173 TGCACTAAACTTAGCCTTGCATC 59.560 43.478 8.42 0.00 36.19 3.91
2008 2071 2.552315 GTGCACTAAACTTAGCCTTGCA 59.448 45.455 10.32 8.42 37.70 4.08
2009 2072 2.552315 TGTGCACTAAACTTAGCCTTGC 59.448 45.455 19.41 1.01 33.43 4.01
2010 2073 4.275936 AGTTGTGCACTAAACTTAGCCTTG 59.724 41.667 19.41 0.00 32.75 3.61
2011 2074 4.275936 CAGTTGTGCACTAAACTTAGCCTT 59.724 41.667 19.41 0.00 34.41 4.35
2012 2075 3.815401 CAGTTGTGCACTAAACTTAGCCT 59.185 43.478 19.41 0.00 34.41 4.58
2013 2076 3.813166 TCAGTTGTGCACTAAACTTAGCC 59.187 43.478 19.41 0.00 34.41 3.93
2014 2077 5.418310 TTCAGTTGTGCACTAAACTTAGC 57.582 39.130 19.41 0.00 34.41 3.09
2015 2078 9.382244 GTTTATTCAGTTGTGCACTAAACTTAG 57.618 33.333 19.41 9.30 34.41 2.18
2016 2079 8.894731 TGTTTATTCAGTTGTGCACTAAACTTA 58.105 29.630 24.20 14.68 33.78 2.24
2017 2080 7.767261 TGTTTATTCAGTTGTGCACTAAACTT 58.233 30.769 24.20 13.69 33.78 2.66
2018 2081 7.328277 TGTTTATTCAGTTGTGCACTAAACT 57.672 32.000 24.20 20.38 33.78 2.66
2019 2082 7.979115 TTGTTTATTCAGTTGTGCACTAAAC 57.021 32.000 19.41 19.98 33.46 2.01
2022 2085 9.891828 CTTATTTGTTTATTCAGTTGTGCACTA 57.108 29.630 19.41 7.83 32.76 2.74
2023 2086 8.629158 TCTTATTTGTTTATTCAGTTGTGCACT 58.371 29.630 19.41 0.00 35.35 4.40
2024 2087 8.795786 TCTTATTTGTTTATTCAGTTGTGCAC 57.204 30.769 10.75 10.75 0.00 4.57
2025 2088 9.462174 CTTCTTATTTGTTTATTCAGTTGTGCA 57.538 29.630 0.00 0.00 0.00 4.57
2026 2089 9.463443 ACTTCTTATTTGTTTATTCAGTTGTGC 57.537 29.630 0.00 0.00 0.00 4.57
2040 2103 8.718734 CGAAACTTAGCCTTACTTCTTATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
2041 2104 8.932791 TCGAAACTTAGCCTTACTTCTTATTTG 58.067 33.333 0.00 0.00 0.00 2.32
2042 2105 9.498176 TTCGAAACTTAGCCTTACTTCTTATTT 57.502 29.630 0.00 0.00 0.00 1.40
2043 2106 8.933807 GTTCGAAACTTAGCCTTACTTCTTATT 58.066 33.333 0.00 0.00 0.00 1.40
2044 2107 7.548427 GGTTCGAAACTTAGCCTTACTTCTTAT 59.452 37.037 5.79 0.00 0.00 1.73
2045 2108 6.870439 GGTTCGAAACTTAGCCTTACTTCTTA 59.130 38.462 5.79 0.00 0.00 2.10
2046 2109 5.699915 GGTTCGAAACTTAGCCTTACTTCTT 59.300 40.000 5.79 0.00 0.00 2.52
2047 2110 5.236282 GGTTCGAAACTTAGCCTTACTTCT 58.764 41.667 5.79 0.00 0.00 2.85
2048 2111 4.091075 CGGTTCGAAACTTAGCCTTACTTC 59.909 45.833 12.14 0.00 0.00 3.01
2049 2112 3.992427 CGGTTCGAAACTTAGCCTTACTT 59.008 43.478 12.14 0.00 0.00 2.24
2050 2113 3.582780 CGGTTCGAAACTTAGCCTTACT 58.417 45.455 12.14 0.00 0.00 2.24
2073 2136 3.267597 ATTTGCGGCGCACTGGTTC 62.268 57.895 36.57 1.18 38.71 3.62
2074 2137 3.294493 ATTTGCGGCGCACTGGTT 61.294 55.556 36.57 14.56 38.71 3.67
2078 2141 2.334946 ATGTCATTTGCGGCGCACT 61.335 52.632 36.57 22.29 38.71 4.40
2086 2149 1.273048 TGGTTGGAGCATGTCATTTGC 59.727 47.619 0.00 0.00 40.45 3.68
2089 2152 3.618019 GCATTTGGTTGGAGCATGTCATT 60.618 43.478 0.00 0.00 0.00 2.57
2091 2154 1.273048 GCATTTGGTTGGAGCATGTCA 59.727 47.619 0.00 0.00 0.00 3.58
2099 2162 1.229145 CAGGGGGCATTTGGTTGGA 60.229 57.895 0.00 0.00 0.00 3.53
2108 2171 0.111639 AACAAACGTACAGGGGGCAT 59.888 50.000 0.00 0.00 0.00 4.40
2115 2178 6.140108 GTGCATTAAAGACAACAAACGTACAG 59.860 38.462 0.00 0.00 0.00 2.74
2126 2189 4.645762 TGTTGCAGTGCATTAAAGACAA 57.354 36.364 20.50 0.00 38.76 3.18
2403 2561 4.383850 TCGGGCCATTGTTATGAAATTG 57.616 40.909 4.39 0.00 33.37 2.32
2404 2562 4.466015 AGTTCGGGCCATTGTTATGAAATT 59.534 37.500 4.39 0.00 33.37 1.82
2409 2567 1.330521 CGAGTTCGGGCCATTGTTATG 59.669 52.381 4.39 0.00 35.37 1.90
2413 2571 0.322322 TTACGAGTTCGGGCCATTGT 59.678 50.000 4.39 0.00 44.95 2.71
2414 2572 1.444836 TTTACGAGTTCGGGCCATTG 58.555 50.000 4.39 0.00 44.95 2.82
2415 2573 2.188062 TTTTACGAGTTCGGGCCATT 57.812 45.000 4.39 0.00 44.95 3.16
2416 2574 1.808343 GTTTTTACGAGTTCGGGCCAT 59.192 47.619 4.39 0.00 44.95 4.40
2417 2575 1.228533 GTTTTTACGAGTTCGGGCCA 58.771 50.000 4.39 0.00 44.95 5.36
2418 2576 0.518636 GGTTTTTACGAGTTCGGGCC 59.481 55.000 6.48 0.00 44.95 5.80
2419 2577 0.164432 CGGTTTTTACGAGTTCGGGC 59.836 55.000 6.48 0.00 44.95 6.13
2420 2578 1.782044 TCGGTTTTTACGAGTTCGGG 58.218 50.000 6.48 0.00 44.95 5.14
2427 2585 1.219646 GTGGCACTCGGTTTTTACGA 58.780 50.000 11.13 0.00 38.79 3.43
2428 2586 0.938713 TGTGGCACTCGGTTTTTACG 59.061 50.000 19.83 0.00 0.00 3.18
2429 2587 1.944709 AGTGTGGCACTCGGTTTTTAC 59.055 47.619 19.83 5.01 41.21 2.01
2430 2588 2.335316 AGTGTGGCACTCGGTTTTTA 57.665 45.000 19.83 0.00 41.21 1.52
2431 2589 1.134175 CAAGTGTGGCACTCGGTTTTT 59.866 47.619 19.83 2.34 44.62 1.94
2432 2590 0.738389 CAAGTGTGGCACTCGGTTTT 59.262 50.000 19.83 2.72 44.62 2.43
2433 2591 1.724582 GCAAGTGTGGCACTCGGTTT 61.725 55.000 19.83 3.08 44.62 3.27
2434 2592 2.186826 GCAAGTGTGGCACTCGGTT 61.187 57.895 19.83 3.82 44.62 4.44
2435 2593 2.591715 GCAAGTGTGGCACTCGGT 60.592 61.111 19.83 6.17 44.62 4.69
2436 2594 3.716006 CGCAAGTGTGGCACTCGG 61.716 66.667 19.83 13.56 44.62 4.63
2449 2607 0.731417 GGAGTCTAGCTACGACGCAA 59.269 55.000 20.07 0.00 36.53 4.85
2450 2608 2.391469 GGAGTCTAGCTACGACGCA 58.609 57.895 20.07 0.00 36.53 5.24
2456 2614 0.756070 AAGGGGCGGAGTCTAGCTAC 60.756 60.000 10.12 0.00 0.00 3.58
2457 2615 0.755698 CAAGGGGCGGAGTCTAGCTA 60.756 60.000 10.12 0.00 0.00 3.32
2458 2616 2.060980 CAAGGGGCGGAGTCTAGCT 61.061 63.158 10.12 0.00 0.00 3.32
2459 2617 1.900545 AACAAGGGGCGGAGTCTAGC 61.901 60.000 3.12 3.12 0.00 3.42
2460 2618 0.175989 GAACAAGGGGCGGAGTCTAG 59.824 60.000 0.00 0.00 0.00 2.43
2461 2619 1.601419 CGAACAAGGGGCGGAGTCTA 61.601 60.000 0.00 0.00 0.00 2.59
2462 2620 2.943978 CGAACAAGGGGCGGAGTCT 61.944 63.158 0.00 0.00 0.00 3.24
2463 2621 1.880819 TACGAACAAGGGGCGGAGTC 61.881 60.000 0.00 0.00 0.00 3.36
2464 2622 1.262640 ATACGAACAAGGGGCGGAGT 61.263 55.000 0.00 0.00 0.00 3.85
2465 2623 0.529992 GATACGAACAAGGGGCGGAG 60.530 60.000 0.00 0.00 0.00 4.63
2466 2624 1.518774 GATACGAACAAGGGGCGGA 59.481 57.895 0.00 0.00 0.00 5.54
2467 2625 1.523032 GGATACGAACAAGGGGCGG 60.523 63.158 0.00 0.00 0.00 6.13
2468 2626 0.107848 AAGGATACGAACAAGGGGCG 60.108 55.000 0.00 0.00 46.39 6.13
2469 2627 2.169978 ACTAAGGATACGAACAAGGGGC 59.830 50.000 0.00 0.00 46.39 5.80
2470 2628 4.648307 AGTACTAAGGATACGAACAAGGGG 59.352 45.833 0.00 0.00 46.39 4.79
2471 2629 5.359009 TGAGTACTAAGGATACGAACAAGGG 59.641 44.000 0.00 0.00 46.39 3.95
2472 2630 6.446781 TGAGTACTAAGGATACGAACAAGG 57.553 41.667 0.00 0.00 46.39 3.61
2473 2631 7.974501 ACAATGAGTACTAAGGATACGAACAAG 59.025 37.037 0.00 0.00 46.39 3.16
2474 2632 7.833786 ACAATGAGTACTAAGGATACGAACAA 58.166 34.615 0.00 0.00 46.39 2.83
2475 2633 7.121611 TGACAATGAGTACTAAGGATACGAACA 59.878 37.037 0.00 0.00 46.39 3.18
2476 2634 7.478322 TGACAATGAGTACTAAGGATACGAAC 58.522 38.462 0.00 0.00 46.39 3.95
2477 2635 7.201794 CCTGACAATGAGTACTAAGGATACGAA 60.202 40.741 0.00 0.00 46.39 3.85
2478 2636 6.262496 CCTGACAATGAGTACTAAGGATACGA 59.738 42.308 0.00 0.00 46.39 3.43
2479 2637 6.262496 TCCTGACAATGAGTACTAAGGATACG 59.738 42.308 0.00 0.00 46.39 3.06
2480 2638 7.584122 TCCTGACAATGAGTACTAAGGATAC 57.416 40.000 0.00 0.00 0.00 2.24
2481 2639 7.175119 CGATCCTGACAATGAGTACTAAGGATA 59.825 40.741 0.00 0.00 42.07 2.59
2482 2640 6.015856 CGATCCTGACAATGAGTACTAAGGAT 60.016 42.308 0.00 5.60 44.12 3.24
2483 2641 5.299531 CGATCCTGACAATGAGTACTAAGGA 59.700 44.000 0.00 0.79 37.02 3.36
2484 2642 5.067936 ACGATCCTGACAATGAGTACTAAGG 59.932 44.000 0.00 0.00 0.00 2.69
2485 2643 6.137794 ACGATCCTGACAATGAGTACTAAG 57.862 41.667 0.00 0.00 0.00 2.18
2486 2644 6.330278 CAACGATCCTGACAATGAGTACTAA 58.670 40.000 0.00 0.00 0.00 2.24
2487 2645 5.678871 GCAACGATCCTGACAATGAGTACTA 60.679 44.000 0.00 0.00 0.00 1.82
2488 2646 4.748892 CAACGATCCTGACAATGAGTACT 58.251 43.478 0.00 0.00 0.00 2.73
2489 2647 3.307242 GCAACGATCCTGACAATGAGTAC 59.693 47.826 0.00 0.00 0.00 2.73
2490 2648 3.521560 GCAACGATCCTGACAATGAGTA 58.478 45.455 0.00 0.00 0.00 2.59
2491 2649 2.350522 GCAACGATCCTGACAATGAGT 58.649 47.619 0.00 0.00 0.00 3.41
2492 2650 1.667724 GGCAACGATCCTGACAATGAG 59.332 52.381 0.00 0.00 0.00 2.90
2493 2651 1.278985 AGGCAACGATCCTGACAATGA 59.721 47.619 0.00 0.00 46.39 2.57
2494 2652 1.667724 GAGGCAACGATCCTGACAATG 59.332 52.381 0.00 0.00 46.39 2.82
2495 2653 1.740380 CGAGGCAACGATCCTGACAAT 60.740 52.381 0.00 0.00 46.39 2.71
2496 2654 0.389817 CGAGGCAACGATCCTGACAA 60.390 55.000 0.00 0.00 46.39 3.18
2497 2655 1.215382 CGAGGCAACGATCCTGACA 59.785 57.895 0.00 0.00 46.39 3.58
2498 2656 0.802607 GTCGAGGCAACGATCCTGAC 60.803 60.000 9.64 0.12 43.93 3.51
2499 2657 1.248101 TGTCGAGGCAACGATCCTGA 61.248 55.000 9.64 0.00 43.93 3.86
2500 2658 0.803768 CTGTCGAGGCAACGATCCTG 60.804 60.000 9.64 0.42 43.93 3.86
2501 2659 1.251527 ACTGTCGAGGCAACGATCCT 61.252 55.000 9.64 0.00 43.93 3.24
2502 2660 0.389948 AACTGTCGAGGCAACGATCC 60.390 55.000 9.64 0.25 43.93 3.36
2503 2661 0.716108 CAACTGTCGAGGCAACGATC 59.284 55.000 9.64 5.35 43.93 3.69
2504 2662 0.670546 CCAACTGTCGAGGCAACGAT 60.671 55.000 9.64 0.00 43.93 3.73
2505 2663 1.300620 CCAACTGTCGAGGCAACGA 60.301 57.895 2.96 2.96 46.39 3.85
2506 2664 3.244105 CCAACTGTCGAGGCAACG 58.756 61.111 0.00 0.00 46.39 4.10
2510 2668 3.112709 GACGCCAACTGTCGAGGC 61.113 66.667 2.62 2.62 44.89 4.70
2511 2669 2.432628 GGACGCCAACTGTCGAGG 60.433 66.667 0.00 0.00 37.22 4.63
2512 2670 2.022129 GTGGACGCCAACTGTCGAG 61.022 63.158 0.00 0.00 37.22 4.04
2513 2671 2.028484 GTGGACGCCAACTGTCGA 59.972 61.111 0.00 0.00 37.22 4.20
2514 2672 3.041940 GGTGGACGCCAACTGTCG 61.042 66.667 6.66 0.00 38.38 4.35
2515 2673 1.302511 ATGGTGGACGCCAACTGTC 60.303 57.895 8.86 0.00 42.67 3.51
2516 2674 1.600636 CATGGTGGACGCCAACTGT 60.601 57.895 8.86 2.11 42.67 3.55
2517 2675 2.334946 CCATGGTGGACGCCAACTG 61.335 63.158 8.86 3.75 42.67 3.16
2518 2676 2.034066 CCATGGTGGACGCCAACT 59.966 61.111 8.86 0.00 42.67 3.16
2519 2677 3.061848 CCCATGGTGGACGCCAAC 61.062 66.667 11.73 6.94 40.96 3.77
2520 2678 3.253061 TCCCATGGTGGACGCCAA 61.253 61.111 11.73 0.00 40.96 4.52
2521 2679 4.028490 GTCCCATGGTGGACGCCA 62.028 66.667 11.73 7.10 44.98 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.