Multiple sequence alignment - TraesCS7A01G233900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G233900 chr7A 100.000 6192 0 0 1 6192 205998021 206004212 0.000000e+00 11435.0
1 TraesCS7A01G233900 chr7A 91.620 179 6 1 4265 4434 206002219 206002397 8.020000e-59 239.0
2 TraesCS7A01G233900 chr7A 91.620 179 6 1 4199 4377 206002285 206002454 8.020000e-59 239.0
3 TraesCS7A01G233900 chr7A 87.023 131 7 2 4314 4434 206002210 206002340 8.370000e-29 139.0
4 TraesCS7A01G233900 chr7A 87.023 131 7 2 4190 4320 206002334 206002454 8.370000e-29 139.0
5 TraesCS7A01G233900 chr7A 84.211 76 2 2 4371 4436 206002210 206002285 1.440000e-06 65.8
6 TraesCS7A01G233900 chr7A 84.211 76 2 2 4190 4265 206002391 206002456 1.440000e-06 65.8
7 TraesCS7A01G233900 chr7D 95.641 1927 52 8 2450 4354 196903256 196905172 0.000000e+00 3064.0
8 TraesCS7A01G233900 chr7D 95.110 1186 42 6 4291 5464 196905053 196906234 0.000000e+00 1855.0
9 TraesCS7A01G233900 chr7D 90.143 1258 57 18 748 1986 196901761 196902970 0.000000e+00 1574.0
10 TraesCS7A01G233900 chr7D 88.435 735 38 21 5497 6192 196906233 196906959 0.000000e+00 843.0
11 TraesCS7A01G233900 chr7D 94.444 252 6 5 2148 2398 196903021 196903265 1.260000e-101 381.0
12 TraesCS7A01G233900 chr7D 86.260 131 8 2 4314 4434 196905009 196905139 3.890000e-27 134.0
13 TraesCS7A01G233900 chr7D 96.491 57 1 1 2018 2074 22959756 22959701 6.610000e-15 93.5
14 TraesCS7A01G233900 chr7D 93.651 63 3 1 2015 2076 141292183 141292121 6.610000e-15 93.5
15 TraesCS7A01G233900 chr7D 82.895 76 3 2 4371 4436 196905009 196905084 6.700000e-05 60.2
16 TraesCS7A01G233900 chr7B 95.004 1181 34 6 3190 4354 161193903 161195074 0.000000e+00 1831.0
17 TraesCS7A01G233900 chr7B 89.663 1306 67 29 748 2026 161191670 161192934 0.000000e+00 1602.0
18 TraesCS7A01G233900 chr7B 92.298 792 38 6 4265 5034 161194920 161195710 0.000000e+00 1103.0
19 TraesCS7A01G233900 chr7B 89.602 779 33 16 5066 5817 161195705 161196462 0.000000e+00 946.0
20 TraesCS7A01G233900 chr7B 96.267 509 12 4 2148 2655 161192963 161193465 0.000000e+00 828.0
21 TraesCS7A01G233900 chr7B 98.387 434 7 0 2699 3132 161193470 161193903 0.000000e+00 763.0
22 TraesCS7A01G233900 chr7B 96.011 376 7 5 5823 6192 161196500 161196873 6.870000e-169 604.0
23 TraesCS7A01G233900 chr7B 86.466 133 8 2 4314 4436 161194911 161195043 3.010000e-28 137.0
24 TraesCS7A01G233900 chr7B 86.869 99 3 2 4199 4297 161194986 161195074 1.100000e-17 102.0
25 TraesCS7A01G233900 chr7B 95.000 60 1 1 2017 2076 589399033 589399090 6.610000e-15 93.5
26 TraesCS7A01G233900 chr7B 86.885 61 3 5 2108 2165 92046803 92046745 5.180000e-06 63.9
27 TraesCS7A01G233900 chr3A 86.356 623 75 8 1 618 747741110 747740493 0.000000e+00 671.0
28 TraesCS7A01G233900 chr3A 78.390 472 79 21 172 632 210953389 210952930 1.020000e-72 285.0
29 TraesCS7A01G233900 chr3A 94.118 51 1 2 2097 2147 440634998 440635046 6.660000e-10 76.8
30 TraesCS7A01G233900 chr2B 86.232 552 66 10 1 546 211135361 211135908 1.920000e-164 590.0
31 TraesCS7A01G233900 chr1D 80.157 635 111 15 1 628 115365667 115366293 1.570000e-125 460.0
32 TraesCS7A01G233900 chr1D 89.286 56 3 2 2097 2150 370323699 370323645 4.010000e-07 67.6
33 TraesCS7A01G233900 chr2D 100.000 53 0 0 2024 2076 53145726 53145778 1.420000e-16 99.0
34 TraesCS7A01G233900 chr2D 95.082 61 1 2 2016 2076 72212558 72212500 1.840000e-15 95.3
35 TraesCS7A01G233900 chr6D 100.000 52 0 0 2025 2076 168293839 168293788 5.110000e-16 97.1
36 TraesCS7A01G233900 chr6D 91.045 67 4 1 2008 2074 78083178 78083114 8.550000e-14 89.8
37 TraesCS7A01G233900 chr4A 100.000 52 0 0 2025 2076 628492797 628492746 5.110000e-16 97.1
38 TraesCS7A01G233900 chr4A 94.000 50 1 2 2108 2156 69329884 69329836 2.390000e-09 75.0
39 TraesCS7A01G233900 chr4A 93.333 45 3 0 2097 2141 165711743 165711699 4.010000e-07 67.6
40 TraesCS7A01G233900 chr4D 94.915 59 1 2 2016 2074 124628861 124628805 2.380000e-14 91.6
41 TraesCS7A01G233900 chr3B 94.118 51 1 2 2097 2147 422472569 422472521 6.660000e-10 76.8
42 TraesCS7A01G233900 chr1A 97.561 41 1 0 2097 2137 313907508 313907548 3.100000e-08 71.3
43 TraesCS7A01G233900 chr6B 95.349 43 1 1 2107 2148 431701383 431701341 4.010000e-07 67.6
44 TraesCS7A01G233900 chr5D 90.000 50 3 1 2097 2144 538176566 538176615 5.180000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G233900 chr7A 205998021 206004212 6191 False 1760.371429 11435 89.386857 1 6192 7 chr7A.!!$F1 6191
1 TraesCS7A01G233900 chr7D 196901761 196906959 5198 False 1130.171429 3064 90.418286 748 6192 7 chr7D.!!$F1 5444
2 TraesCS7A01G233900 chr7B 161191670 161196873 5203 False 879.555556 1831 92.285222 748 6192 9 chr7B.!!$F2 5444
3 TraesCS7A01G233900 chr3A 747740493 747741110 617 True 671.000000 671 86.356000 1 618 1 chr3A.!!$R2 617
4 TraesCS7A01G233900 chr2B 211135361 211135908 547 False 590.000000 590 86.232000 1 546 1 chr2B.!!$F1 545
5 TraesCS7A01G233900 chr1D 115365667 115366293 626 False 460.000000 460 80.157000 1 628 1 chr1D.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 476 0.039911 ACCCTAACCTCGAGCTCACT 59.960 55.0 15.40 0.00 0.0 3.41 F
1593 1616 0.106967 GAAAGAGGACCTGATGCCCC 60.107 60.0 0.00 0.00 0.0 5.80 F
1599 1622 0.252239 GGACCTGATGCCCCCTTTTT 60.252 55.0 0.00 0.00 0.0 1.94 F
2038 2108 0.257039 TACTGTACTCCCTCCGTCCC 59.743 60.0 0.00 0.00 0.0 4.46 F
2040 2110 0.397254 CTGTACTCCCTCCGTCCCAT 60.397 60.0 0.00 0.00 0.0 4.00 F
2471 2559 0.541863 ACTAGTTAGCATTGCCGCCT 59.458 50.0 4.70 1.04 0.0 5.52 F
4351 4463 0.036010 CGGAGGACCTGCATCAAACT 60.036 55.0 14.03 0.00 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1627 0.178891 AGGGCATCGGGTATCCTCAT 60.179 55.000 0.00 0.00 0.00 2.90 R
2977 3065 0.038166 GTGACCATGGAAAGGAGCCA 59.962 55.000 21.47 0.07 40.24 4.75 R
3453 3559 0.324943 TAAACTGAGCTGGAGTGCCC 59.675 55.000 0.00 0.00 0.00 5.36 R
3517 3623 4.634443 ACTATCACCACCGCAATTTCTTAC 59.366 41.667 0.00 0.00 0.00 2.34 R
4101 4209 7.942341 TCAAACAGGAACTCACTAACCATATTT 59.058 33.333 0.00 0.00 34.60 1.40 R
4380 4492 0.033228 CAGGTCCTCCGCATCTGATC 59.967 60.000 0.00 0.00 39.05 2.92 R
5406 5538 0.460811 CTCACGCAGCAGCATAAGGA 60.461 55.000 0.82 0.00 42.27 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 4.524328 CCAACTATCCAGCTTCACCTTTTT 59.476 41.667 0.00 0.00 0.00 1.94
74 76 8.801299 TGAAAAACCATCATATTCAGTAAGCAA 58.199 29.630 0.00 0.00 0.00 3.91
82 84 7.003939 TCATATTCAGTAAGCAACAATGTCG 57.996 36.000 0.00 0.00 0.00 4.35
84 86 4.990543 TTCAGTAAGCAACAATGTCGAG 57.009 40.909 0.00 0.00 0.00 4.04
93 95 4.037446 AGCAACAATGTCGAGCCTTTAAAA 59.963 37.500 0.00 0.00 0.00 1.52
163 165 7.939039 AGTTGAATTGGATAGAGAACAAGTTCA 59.061 33.333 14.69 0.00 41.84 3.18
226 229 1.063616 CTGCTTTCATGTCCGCATCAG 59.936 52.381 6.14 0.00 31.99 2.90
380 383 2.032681 AGTGTTGCCGCTTCCTCC 59.967 61.111 0.00 0.00 0.00 4.30
392 395 0.885196 CTTCCTCCGATCTCCGATCC 59.115 60.000 0.00 0.00 41.76 3.36
426 429 4.386951 CACCCGTGTCCGCCATGA 62.387 66.667 0.00 0.00 31.20 3.07
463 466 3.052414 ACTCCAAACCAAAACCCTAACCT 60.052 43.478 0.00 0.00 0.00 3.50
465 468 2.295070 CCAAACCAAAACCCTAACCTCG 59.705 50.000 0.00 0.00 0.00 4.63
467 470 2.853235 ACCAAAACCCTAACCTCGAG 57.147 50.000 5.13 5.13 0.00 4.04
471 474 1.640917 AAACCCTAACCTCGAGCTCA 58.359 50.000 15.40 0.00 0.00 4.26
473 476 0.039911 ACCCTAACCTCGAGCTCACT 59.960 55.000 15.40 0.00 0.00 3.41
633 637 3.782992 ACCTAGGGGTAAAAACTCTCGA 58.217 45.455 14.81 0.00 45.32 4.04
634 638 4.162651 ACCTAGGGGTAAAAACTCTCGAA 58.837 43.478 14.81 0.00 45.32 3.71
635 639 4.222366 ACCTAGGGGTAAAAACTCTCGAAG 59.778 45.833 14.81 0.00 45.32 3.79
636 640 3.697619 AGGGGTAAAAACTCTCGAAGG 57.302 47.619 0.00 0.00 0.00 3.46
637 641 3.245441 AGGGGTAAAAACTCTCGAAGGA 58.755 45.455 0.00 0.00 0.00 3.36
638 642 3.261137 AGGGGTAAAAACTCTCGAAGGAG 59.739 47.826 0.37 0.37 41.89 3.69
639 643 3.260128 GGGGTAAAAACTCTCGAAGGAGA 59.740 47.826 8.55 0.00 46.90 3.71
650 654 5.517322 TCTCGAAGGAGAAATAACTAGGC 57.483 43.478 0.00 0.00 46.11 3.93
651 655 5.202004 TCTCGAAGGAGAAATAACTAGGCT 58.798 41.667 0.00 0.00 46.11 4.58
652 656 5.067936 TCTCGAAGGAGAAATAACTAGGCTG 59.932 44.000 0.00 0.00 46.11 4.85
653 657 4.954202 TCGAAGGAGAAATAACTAGGCTGA 59.046 41.667 0.00 0.00 0.00 4.26
654 658 5.598830 TCGAAGGAGAAATAACTAGGCTGAT 59.401 40.000 0.00 0.00 0.00 2.90
655 659 6.098409 TCGAAGGAGAAATAACTAGGCTGATT 59.902 38.462 0.00 0.00 0.00 2.57
656 660 6.763610 CGAAGGAGAAATAACTAGGCTGATTT 59.236 38.462 0.00 0.00 0.00 2.17
657 661 7.254590 CGAAGGAGAAATAACTAGGCTGATTTG 60.255 40.741 0.00 0.00 0.00 2.32
658 662 7.200434 AGGAGAAATAACTAGGCTGATTTGA 57.800 36.000 0.00 0.00 0.00 2.69
659 663 7.278875 AGGAGAAATAACTAGGCTGATTTGAG 58.721 38.462 0.00 0.00 0.00 3.02
660 664 7.051000 GGAGAAATAACTAGGCTGATTTGAGT 58.949 38.462 0.00 0.00 0.00 3.41
661 665 7.554476 GGAGAAATAACTAGGCTGATTTGAGTT 59.446 37.037 0.00 0.00 34.78 3.01
662 666 9.601217 GAGAAATAACTAGGCTGATTTGAGTTA 57.399 33.333 7.54 7.54 37.11 2.24
667 671 9.905713 ATAACTAGGCTGATTTGAGTTATTTCA 57.094 29.630 10.78 0.00 39.24 2.69
668 672 8.635765 AACTAGGCTGATTTGAGTTATTTCAA 57.364 30.769 0.00 0.00 35.38 2.69
669 673 8.273780 ACTAGGCTGATTTGAGTTATTTCAAG 57.726 34.615 0.00 0.00 38.25 3.02
670 674 8.103305 ACTAGGCTGATTTGAGTTATTTCAAGA 58.897 33.333 0.00 0.00 38.25 3.02
671 675 7.765695 AGGCTGATTTGAGTTATTTCAAGAA 57.234 32.000 0.00 0.00 38.25 2.52
672 676 8.181904 AGGCTGATTTGAGTTATTTCAAGAAA 57.818 30.769 0.00 0.00 38.25 2.52
673 677 8.810041 AGGCTGATTTGAGTTATTTCAAGAAAT 58.190 29.630 12.21 12.21 42.95 2.17
674 678 9.080915 GGCTGATTTGAGTTATTTCAAGAAATC 57.919 33.333 11.03 0.00 40.99 2.17
675 679 9.630098 GCTGATTTGAGTTATTTCAAGAAATCA 57.370 29.630 11.03 0.00 40.99 2.57
714 718 8.750515 AAAAATCAACTGAAATTGAATTGGGT 57.249 26.923 0.00 0.00 41.78 4.51
715 719 7.967890 AAATCAACTGAAATTGAATTGGGTC 57.032 32.000 0.00 0.00 41.78 4.46
716 720 5.119931 TCAACTGAAATTGAATTGGGTCG 57.880 39.130 0.00 0.00 35.65 4.79
717 721 4.824537 TCAACTGAAATTGAATTGGGTCGA 59.175 37.500 0.00 0.00 35.65 4.20
718 722 5.476599 TCAACTGAAATTGAATTGGGTCGAT 59.523 36.000 0.00 0.00 35.65 3.59
719 723 5.567138 ACTGAAATTGAATTGGGTCGATC 57.433 39.130 0.00 0.00 0.00 3.69
720 724 5.009631 ACTGAAATTGAATTGGGTCGATCA 58.990 37.500 0.00 0.00 0.00 2.92
721 725 5.476599 ACTGAAATTGAATTGGGTCGATCAA 59.523 36.000 0.00 2.12 36.35 2.57
722 726 6.153340 ACTGAAATTGAATTGGGTCGATCAAT 59.847 34.615 0.00 4.60 42.61 2.57
728 732 9.889128 AATTGAATTGGGTCGATCAATTTTAAT 57.111 25.926 22.01 20.67 45.37 1.40
729 733 9.889128 ATTGAATTGGGTCGATCAATTTTAATT 57.111 25.926 22.01 9.30 42.68 1.40
730 734 8.700722 TGAATTGGGTCGATCAATTTTAATTG 57.299 30.769 22.01 8.55 42.68 2.32
731 735 8.310382 TGAATTGGGTCGATCAATTTTAATTGT 58.690 29.630 22.01 6.14 44.66 2.71
732 736 9.796120 GAATTGGGTCGATCAATTTTAATTGTA 57.204 29.630 22.01 3.47 44.66 2.41
733 737 9.581099 AATTGGGTCGATCAATTTTAATTGTAC 57.419 29.630 18.04 8.73 44.66 2.90
734 738 7.931578 TGGGTCGATCAATTTTAATTGTACT 57.068 32.000 13.28 2.55 44.66 2.73
735 739 9.451002 TTGGGTCGATCAATTTTAATTGTACTA 57.549 29.630 13.28 0.00 44.66 1.82
736 740 9.621629 TGGGTCGATCAATTTTAATTGTACTAT 57.378 29.630 13.28 2.10 44.66 2.12
782 786 9.770097 ATTATACATGAATGATATCGGTCCATC 57.230 33.333 0.00 0.00 0.00 3.51
783 787 5.488262 ACATGAATGATATCGGTCCATCA 57.512 39.130 0.00 0.00 35.72 3.07
789 793 5.595257 ATGATATCGGTCCATCAGATCAG 57.405 43.478 0.00 0.00 34.79 2.90
790 794 3.766051 TGATATCGGTCCATCAGATCAGG 59.234 47.826 0.00 0.00 33.41 3.86
797 801 4.504514 CGGTCCATCAGATCAGGAATCAAT 60.505 45.833 0.00 0.00 36.79 2.57
799 803 5.455755 GGTCCATCAGATCAGGAATCAATGA 60.456 44.000 0.00 0.00 36.79 2.57
807 811 5.990386 AGATCAGGAATCAATGACGAATCAG 59.010 40.000 0.00 0.00 36.05 2.90
814 818 6.238049 GGAATCAATGACGAATCAGAACTCAG 60.238 42.308 0.00 0.00 38.57 3.35
818 822 3.902150 TGACGAATCAGAACTCAGTGAC 58.098 45.455 0.00 0.00 0.00 3.67
827 831 4.136796 CAGAACTCAGTGACCCAAATTCA 58.863 43.478 0.00 0.00 0.00 2.57
828 832 4.580167 CAGAACTCAGTGACCCAAATTCAA 59.420 41.667 0.00 0.00 0.00 2.69
829 833 5.242393 CAGAACTCAGTGACCCAAATTCAAT 59.758 40.000 0.00 0.00 0.00 2.57
830 834 5.474876 AGAACTCAGTGACCCAAATTCAATC 59.525 40.000 0.00 0.00 0.00 2.67
831 835 4.728772 ACTCAGTGACCCAAATTCAATCA 58.271 39.130 0.00 0.00 0.00 2.57
832 836 5.139727 ACTCAGTGACCCAAATTCAATCAA 58.860 37.500 0.00 0.00 0.00 2.57
833 837 5.776716 ACTCAGTGACCCAAATTCAATCAAT 59.223 36.000 0.00 0.00 0.00 2.57
834 838 6.268387 ACTCAGTGACCCAAATTCAATCAATT 59.732 34.615 0.00 0.00 36.12 2.32
836 840 5.121142 CAGTGACCCAAATTCAATCAATTGC 59.879 40.000 0.00 0.00 34.69 3.56
837 841 5.012354 AGTGACCCAAATTCAATCAATTGCT 59.988 36.000 0.00 0.00 34.69 3.91
838 842 5.349543 GTGACCCAAATTCAATCAATTGCTC 59.650 40.000 0.00 0.00 34.69 4.26
839 843 5.246656 TGACCCAAATTCAATCAATTGCTCT 59.753 36.000 0.00 0.00 34.69 4.09
840 844 6.436847 TGACCCAAATTCAATCAATTGCTCTA 59.563 34.615 0.00 0.00 34.69 2.43
841 845 6.633856 ACCCAAATTCAATCAATTGCTCTAC 58.366 36.000 0.00 0.00 34.69 2.59
842 846 6.211184 ACCCAAATTCAATCAATTGCTCTACA 59.789 34.615 0.00 0.00 34.69 2.74
843 847 6.755141 CCCAAATTCAATCAATTGCTCTACAG 59.245 38.462 0.00 0.00 34.69 2.74
861 873 2.882761 ACAGCGGTTCCTTTACTTTTCC 59.117 45.455 0.00 0.00 0.00 3.13
864 876 2.486982 GCGGTTCCTTTACTTTTCCCTC 59.513 50.000 0.00 0.00 0.00 4.30
868 880 5.247084 GGTTCCTTTACTTTTCCCTCTCTC 58.753 45.833 0.00 0.00 0.00 3.20
871 883 4.463186 TCCTTTACTTTTCCCTCTCTCTCG 59.537 45.833 0.00 0.00 0.00 4.04
873 885 5.388408 TTTACTTTTCCCTCTCTCTCGTC 57.612 43.478 0.00 0.00 0.00 4.20
983 995 4.280174 GGCAGATACGGAAATACTACCTCA 59.720 45.833 0.00 0.00 0.00 3.86
1057 1069 2.673341 TCACCTCGCGCTCTGACT 60.673 61.111 5.56 0.00 0.00 3.41
1421 1439 4.283212 TGTTTGTGAAGGAATTTGGGGATC 59.717 41.667 0.00 0.00 0.00 3.36
1505 1528 1.059098 ACTTGTGAGGATGTGCTGGA 58.941 50.000 0.00 0.00 0.00 3.86
1510 1533 4.077300 TGTGAGGATGTGCTGGAATATC 57.923 45.455 0.00 0.00 0.00 1.63
1516 1539 6.043590 TGAGGATGTGCTGGAATATCATACTT 59.956 38.462 0.00 0.00 30.94 2.24
1547 1570 4.025229 TCTGATTTCGTTTCGTTGAAGTGG 60.025 41.667 0.00 0.00 0.00 4.00
1588 1611 5.012893 GTGGATTTTGAAAGAGGACCTGAT 58.987 41.667 0.00 0.00 0.00 2.90
1589 1612 5.012239 TGGATTTTGAAAGAGGACCTGATG 58.988 41.667 0.00 0.00 0.00 3.07
1590 1613 4.142293 GGATTTTGAAAGAGGACCTGATGC 60.142 45.833 0.00 0.00 0.00 3.91
1591 1614 2.496899 TTGAAAGAGGACCTGATGCC 57.503 50.000 0.00 0.00 0.00 4.40
1592 1615 0.620556 TGAAAGAGGACCTGATGCCC 59.379 55.000 0.00 0.00 0.00 5.36
1593 1616 0.106967 GAAAGAGGACCTGATGCCCC 60.107 60.000 0.00 0.00 0.00 5.80
1594 1617 1.575447 AAAGAGGACCTGATGCCCCC 61.575 60.000 0.00 0.00 0.00 5.40
1595 1618 2.367512 GAGGACCTGATGCCCCCT 60.368 66.667 0.00 0.00 0.00 4.79
1596 1619 2.003548 GAGGACCTGATGCCCCCTT 61.004 63.158 0.00 0.00 0.00 3.95
1597 1620 1.544917 AGGACCTGATGCCCCCTTT 60.545 57.895 0.00 0.00 0.00 3.11
1598 1621 1.149133 AGGACCTGATGCCCCCTTTT 61.149 55.000 0.00 0.00 0.00 2.27
1599 1622 0.252239 GGACCTGATGCCCCCTTTTT 60.252 55.000 0.00 0.00 0.00 1.94
1724 1786 8.418597 AGGCTCGTTATCATCCTAGTATTTTA 57.581 34.615 0.00 0.00 0.00 1.52
1821 1883 6.000840 TGGTGAATGCTGTATTAGTGTTCAA 58.999 36.000 0.00 0.00 35.34 2.69
1849 1911 1.968493 GGTGAGGCGTCAGGGATATTA 59.032 52.381 9.83 0.00 31.53 0.98
2029 2099 8.071177 TGGTCTTTAGGTATTTACTGTACTCC 57.929 38.462 0.00 0.00 0.00 3.85
2030 2100 7.124750 TGGTCTTTAGGTATTTACTGTACTCCC 59.875 40.741 0.00 0.00 0.00 4.30
2031 2101 7.344093 GGTCTTTAGGTATTTACTGTACTCCCT 59.656 40.741 0.00 0.00 0.00 4.20
2032 2102 8.412456 GTCTTTAGGTATTTACTGTACTCCCTC 58.588 40.741 0.00 0.00 0.00 4.30
2033 2103 7.562821 TCTTTAGGTATTTACTGTACTCCCTCC 59.437 40.741 0.00 0.00 0.00 4.30
2034 2104 4.213513 AGGTATTTACTGTACTCCCTCCG 58.786 47.826 0.00 0.00 0.00 4.63
2035 2105 3.956848 GGTATTTACTGTACTCCCTCCGT 59.043 47.826 0.00 0.00 0.00 4.69
2036 2106 4.037327 GGTATTTACTGTACTCCCTCCGTC 59.963 50.000 0.00 0.00 0.00 4.79
2037 2107 2.134789 TTACTGTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
2038 2108 0.257039 TACTGTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
2039 2109 1.000019 CTGTACTCCCTCCGTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
2040 2110 0.397254 CTGTACTCCCTCCGTCCCAT 60.397 60.000 0.00 0.00 0.00 4.00
2041 2111 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2042 2112 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2043 2113 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
2044 2114 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
2045 2115 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2046 2116 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2047 2117 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2048 2118 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2049 2119 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2050 2120 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2051 2121 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2052 2122 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2053 2123 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2054 2124 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2055 2125 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2056 2126 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2057 2127 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2081 2151 2.821437 ACTACACTAGTGTCATGGCCT 58.179 47.619 31.11 7.67 43.74 5.19
2082 2152 3.173965 ACTACACTAGTGTCATGGCCTT 58.826 45.455 31.11 6.93 43.74 4.35
2083 2153 3.583086 ACTACACTAGTGTCATGGCCTTT 59.417 43.478 31.11 6.17 43.74 3.11
2084 2154 4.775780 ACTACACTAGTGTCATGGCCTTTA 59.224 41.667 31.11 9.52 43.74 1.85
2085 2155 4.207891 ACACTAGTGTCATGGCCTTTAG 57.792 45.455 22.95 0.00 40.24 1.85
2086 2156 3.055094 ACACTAGTGTCATGGCCTTTAGG 60.055 47.826 22.95 0.00 40.24 2.69
2124 2194 9.701098 TTTTACACTACGCTCTTATATTATGGG 57.299 33.333 0.00 0.00 0.00 4.00
2125 2195 8.640063 TTACACTACGCTCTTATATTATGGGA 57.360 34.615 0.00 0.00 0.00 4.37
2126 2196 6.921914 ACACTACGCTCTTATATTATGGGAC 58.078 40.000 0.00 0.00 0.00 4.46
2127 2197 6.028368 CACTACGCTCTTATATTATGGGACG 58.972 44.000 0.00 0.00 0.00 4.79
2128 2198 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2129 2199 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2130 2200 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2131 2201 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2132 2202 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2133 2203 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2134 2204 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2135 2205 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2355 2443 9.985730 TCTTCAACAATTTCTTCTAAATTGCAT 57.014 25.926 18.36 8.79 46.23 3.96
2407 2495 3.311596 AGTTACACAAGTTTGCGAAGTCC 59.688 43.478 0.00 0.00 0.00 3.85
2410 2498 2.158871 ACACAAGTTTGCGAAGTCCCTA 60.159 45.455 0.00 0.00 0.00 3.53
2466 2554 7.596749 TCTTCACTTAACTAGTTAGCATTGC 57.403 36.000 14.73 0.00 33.85 3.56
2471 2559 0.541863 ACTAGTTAGCATTGCCGCCT 59.458 50.000 4.70 1.04 0.00 5.52
2690 2778 3.535561 ACTTGGTGACTTCACTGACTTG 58.464 45.455 9.20 0.00 45.73 3.16
2695 2783 3.307059 GGTGACTTCACTGACTTGCCTAT 60.307 47.826 9.20 0.00 45.73 2.57
2910 2998 5.073691 AGGTGGAATTTCCTCTCTTTCTGAA 59.926 40.000 16.25 0.00 37.46 3.02
2977 3065 7.554476 GGACTTCTTATGCCATCTTTTCTTACT 59.446 37.037 0.00 0.00 0.00 2.24
3297 3392 5.011023 ACCAGCAATCTTTCGAAAAATTCCT 59.989 36.000 12.41 3.13 0.00 3.36
3298 3393 5.928264 CCAGCAATCTTTCGAAAAATTCCTT 59.072 36.000 12.41 0.00 0.00 3.36
3299 3394 7.090173 CCAGCAATCTTTCGAAAAATTCCTTA 58.910 34.615 12.41 0.00 0.00 2.69
3300 3395 7.274250 CCAGCAATCTTTCGAAAAATTCCTTAG 59.726 37.037 12.41 0.00 0.00 2.18
3301 3396 7.809806 CAGCAATCTTTCGAAAAATTCCTTAGT 59.190 33.333 12.41 0.00 0.00 2.24
3302 3397 9.010029 AGCAATCTTTCGAAAAATTCCTTAGTA 57.990 29.630 12.41 0.00 0.00 1.82
3303 3398 9.620660 GCAATCTTTCGAAAAATTCCTTAGTAA 57.379 29.630 12.41 0.00 0.00 2.24
3438 3544 1.280710 TGTTACGGTGCTGGATGGAAT 59.719 47.619 0.00 0.00 0.00 3.01
3453 3559 5.179045 GATGGAATCATGTAGGTGCTTTG 57.821 43.478 0.00 0.00 44.70 2.77
3672 3780 8.655901 AGAGAAAGGAAGATCTTCACTAGTTTT 58.344 33.333 31.29 20.63 41.20 2.43
3674 3782 8.432805 AGAAAGGAAGATCTTCACTAGTTTTGA 58.567 33.333 31.29 0.00 41.20 2.69
4116 4224 9.307121 CAACTGAGACTAAATATGGTTAGTGAG 57.693 37.037 4.83 2.15 42.94 3.51
4135 4243 5.765182 AGTGAGTTCCTGTTTGATTAGGTTG 59.235 40.000 0.00 0.00 35.54 3.77
4349 4461 1.377202 GCGGAGGACCTGCATCAAA 60.377 57.895 14.03 0.00 36.36 2.69
4350 4462 1.648467 GCGGAGGACCTGCATCAAAC 61.648 60.000 14.03 0.00 36.36 2.93
4351 4463 0.036010 CGGAGGACCTGCATCAAACT 60.036 55.000 14.03 0.00 0.00 2.66
4352 4464 1.457346 GGAGGACCTGCATCAAACTG 58.543 55.000 8.36 0.00 0.00 3.16
4353 4465 1.003580 GGAGGACCTGCATCAAACTGA 59.996 52.381 8.36 0.00 0.00 3.41
4354 4466 2.079925 GAGGACCTGCATCAAACTGAC 58.920 52.381 0.00 0.00 0.00 3.51
4355 4467 1.168714 GGACCTGCATCAAACTGACC 58.831 55.000 0.00 0.00 0.00 4.02
4356 4468 1.545428 GGACCTGCATCAAACTGACCA 60.545 52.381 0.00 0.00 0.00 4.02
4357 4469 2.440409 GACCTGCATCAAACTGACCAT 58.560 47.619 0.00 0.00 0.00 3.55
4358 4470 2.421424 GACCTGCATCAAACTGACCATC 59.579 50.000 0.00 0.00 0.00 3.51
4359 4471 1.747355 CCTGCATCAAACTGACCATCC 59.253 52.381 0.00 0.00 0.00 3.51
4360 4472 2.619849 CCTGCATCAAACTGACCATCCT 60.620 50.000 0.00 0.00 0.00 3.24
4361 4473 2.681848 CTGCATCAAACTGACCATCCTC 59.318 50.000 0.00 0.00 0.00 3.71
4362 4474 2.040145 TGCATCAAACTGACCATCCTCA 59.960 45.455 0.00 0.00 0.00 3.86
4363 4475 3.084039 GCATCAAACTGACCATCCTCAA 58.916 45.455 0.00 0.00 0.00 3.02
4364 4476 3.128242 GCATCAAACTGACCATCCTCAAG 59.872 47.826 0.00 0.00 0.00 3.02
4365 4477 4.582869 CATCAAACTGACCATCCTCAAGA 58.417 43.478 0.00 0.00 0.00 3.02
4366 4478 4.277515 TCAAACTGACCATCCTCAAGAG 57.722 45.455 0.00 0.00 0.00 2.85
4377 4489 1.661341 CCTCAAGAGGTAGTGCATGC 58.339 55.000 11.82 11.82 43.61 4.06
4378 4490 1.661341 CTCAAGAGGTAGTGCATGCC 58.339 55.000 16.68 6.65 0.00 4.40
4379 4491 0.108186 TCAAGAGGTAGTGCATGCCG 60.108 55.000 16.68 0.00 39.02 5.69
4380 4492 1.091771 CAAGAGGTAGTGCATGCCGG 61.092 60.000 16.68 0.00 39.02 6.13
4381 4493 1.264749 AAGAGGTAGTGCATGCCGGA 61.265 55.000 16.68 0.00 39.02 5.14
4382 4494 1.050988 AGAGGTAGTGCATGCCGGAT 61.051 55.000 16.68 0.46 39.02 4.18
4383 4495 0.601311 GAGGTAGTGCATGCCGGATC 60.601 60.000 16.68 0.00 39.02 3.36
4384 4496 1.146041 GGTAGTGCATGCCGGATCA 59.854 57.895 16.68 0.00 0.00 2.92
4385 4497 0.882042 GGTAGTGCATGCCGGATCAG 60.882 60.000 16.68 0.00 0.00 2.90
4386 4498 0.104855 GTAGTGCATGCCGGATCAGA 59.895 55.000 16.68 0.00 0.00 3.27
4387 4499 1.051008 TAGTGCATGCCGGATCAGAT 58.949 50.000 16.68 0.00 0.00 2.90
4388 4500 0.534427 AGTGCATGCCGGATCAGATG 60.534 55.000 16.68 0.00 0.00 2.90
4389 4501 1.895231 TGCATGCCGGATCAGATGC 60.895 57.895 16.68 10.61 41.34 3.91
4390 4502 2.962827 GCATGCCGGATCAGATGCG 61.963 63.158 16.93 16.93 44.12 4.73
4395 4507 3.448194 CGGATCAGATGCGGAGGA 58.552 61.111 16.15 0.00 40.62 3.71
4396 4508 1.006805 CGGATCAGATGCGGAGGAC 60.007 63.158 16.15 0.00 40.62 3.85
4397 4509 1.369321 GGATCAGATGCGGAGGACC 59.631 63.158 0.00 0.00 0.00 4.46
4398 4510 1.118356 GGATCAGATGCGGAGGACCT 61.118 60.000 0.00 0.00 0.00 3.85
4399 4511 0.033228 GATCAGATGCGGAGGACCTG 59.967 60.000 0.00 0.00 0.00 4.00
4400 4512 2.037620 ATCAGATGCGGAGGACCTGC 62.038 60.000 0.00 0.00 36.67 4.85
4401 4513 2.685017 AGATGCGGAGGACCTGCA 60.685 61.111 14.03 11.31 44.47 4.41
4403 4515 2.507944 ATGCGGAGGACCTGCATC 59.492 61.111 14.03 4.65 45.48 3.91
4404 4516 2.369633 ATGCGGAGGACCTGCATCA 61.370 57.895 14.03 10.30 45.48 3.07
4413 4525 1.545428 GGACCTGCATCAAACTGACCA 60.545 52.381 0.00 0.00 0.00 4.02
4485 4597 5.547465 TGACCATCCTATAACAATAAGCCG 58.453 41.667 0.00 0.00 0.00 5.52
4691 4805 3.445096 ACAGTATTTCCTTCAATGGCAGC 59.555 43.478 0.00 0.00 0.00 5.25
4827 4941 4.118410 CTCATCGAGAATCTCCAAGTTGG 58.882 47.826 16.36 16.36 39.43 3.77
4924 5038 3.493350 GCTGACGAGTCATTCCATGGTAT 60.493 47.826 12.58 4.51 39.13 2.73
5053 5168 2.142356 TTGGAAACCCATGCGATGAT 57.858 45.000 0.00 0.00 32.92 2.45
5113 5228 4.685628 CCTGTGTTGTATTGATTTTGTGCC 59.314 41.667 0.00 0.00 0.00 5.01
5193 5308 5.806366 GACTTGTCAGTCTACTCCTAGAC 57.194 47.826 0.00 0.36 46.70 2.59
5350 5477 4.261489 CGTACGCATGGATAGGAACTTAGT 60.261 45.833 0.52 0.00 41.75 2.24
5389 5521 6.746822 CGTGCATCATTGTGTTATGTACATTT 59.253 34.615 14.77 0.00 39.39 2.32
5406 5538 5.261209 ACATTTGTGTGTTGTGTTATGCT 57.739 34.783 0.00 0.00 0.00 3.79
5407 5539 5.280945 ACATTTGTGTGTTGTGTTATGCTC 58.719 37.500 0.00 0.00 0.00 4.26
5408 5540 3.980646 TTGTGTGTTGTGTTATGCTCC 57.019 42.857 0.00 0.00 0.00 4.70
5409 5541 3.207265 TGTGTGTTGTGTTATGCTCCT 57.793 42.857 0.00 0.00 0.00 3.69
5434 5566 1.293963 TGCTGCGTGAGAACAGATGC 61.294 55.000 0.00 0.00 35.90 3.91
5456 5588 6.959701 GCTACGAAAATAGCAAATCATGTC 57.040 37.500 0.00 0.00 45.83 3.06
5508 5640 8.094548 TGTATAAGTGGTCCTGCATAATGATAC 58.905 37.037 0.00 0.00 0.00 2.24
5530 5665 4.019681 ACAGGATCAAGGGTCGTTGATAAA 60.020 41.667 15.87 0.00 45.32 1.40
5532 5667 5.590259 CAGGATCAAGGGTCGTTGATAAAAT 59.410 40.000 15.87 0.00 45.32 1.82
5533 5668 6.765989 CAGGATCAAGGGTCGTTGATAAAATA 59.234 38.462 15.87 0.00 45.32 1.40
5534 5669 6.766467 AGGATCAAGGGTCGTTGATAAAATAC 59.234 38.462 15.87 5.76 45.32 1.89
5535 5670 6.766467 GGATCAAGGGTCGTTGATAAAATACT 59.234 38.462 15.87 0.00 45.32 2.12
5536 5671 7.929785 GGATCAAGGGTCGTTGATAAAATACTA 59.070 37.037 15.87 0.00 45.32 1.82
5537 5672 8.658499 ATCAAGGGTCGTTGATAAAATACTAC 57.342 34.615 14.73 0.00 43.85 2.73
5575 5710 5.105756 TGGGTAAAACGGTAGAAGTACTAGC 60.106 44.000 0.00 0.00 43.60 3.42
5588 5723 6.451393 AGAAGTACTAGCTGAAGAACAAGTG 58.549 40.000 0.00 0.00 0.00 3.16
5617 5753 3.050835 ACTTGTTACCAGTACCAAGGGT 58.949 45.455 16.45 6.75 39.11 4.34
5646 5782 1.202348 TCGGTTTCGGTGAACGTACAA 60.202 47.619 0.00 0.00 44.69 2.41
5647 5783 1.592081 CGGTTTCGGTGAACGTACAAA 59.408 47.619 0.00 0.00 44.69 2.83
5655 5791 4.630940 TCGGTGAACGTACAAATTATTCCC 59.369 41.667 0.00 0.00 44.69 3.97
5658 5794 5.413523 GGTGAACGTACAAATTATTCCCAGT 59.586 40.000 0.00 0.00 0.00 4.00
5774 5916 2.937469 TAAAATGGCGACCAATGCAG 57.063 45.000 2.68 0.00 36.95 4.41
5817 5970 1.374252 GCGCCGGAGTGGGTATATG 60.374 63.158 5.05 0.00 38.63 1.78
5819 5972 0.038526 CGCCGGAGTGGGTATATGTC 60.039 60.000 5.05 0.00 38.63 3.06
5820 5973 1.045407 GCCGGAGTGGGTATATGTCA 58.955 55.000 5.05 0.00 38.63 3.58
5821 5974 1.623811 GCCGGAGTGGGTATATGTCAT 59.376 52.381 5.05 0.00 38.63 3.06
5838 6023 3.230134 GTCATGGAGTAGGAGAGCAGAT 58.770 50.000 0.00 0.00 0.00 2.90
5848 6038 1.619827 GGAGAGCAGATGGAGATGGAG 59.380 57.143 0.00 0.00 0.00 3.86
5850 6040 2.297033 GAGAGCAGATGGAGATGGAGAC 59.703 54.545 0.00 0.00 0.00 3.36
6038 6228 1.083806 TTGATGATCACGTCCAGCGC 61.084 55.000 0.00 0.00 46.11 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.018050 AGGTGAAGCTGGATAGTTGGAAAT 60.018 41.667 0.00 0.00 0.00 2.17
41 43 7.739825 TGAATATGATGGTTTTTCAAACCCAA 58.260 30.769 14.47 0.00 39.54 4.12
54 56 7.340232 ACATTGTTGCTTACTGAATATGATGGT 59.660 33.333 0.00 0.00 0.00 3.55
74 76 4.157840 GGGATTTTAAAGGCTCGACATTGT 59.842 41.667 0.00 0.00 0.00 2.71
82 84 3.447586 GGACCTTGGGATTTTAAAGGCTC 59.552 47.826 0.62 0.00 43.62 4.70
84 86 2.500098 GGGACCTTGGGATTTTAAAGGC 59.500 50.000 0.62 0.00 43.62 4.35
93 95 2.616458 GCACCAGGGACCTTGGGAT 61.616 63.158 25.42 3.70 0.00 3.85
163 165 4.082125 GTTGTTTGGAGGAGGATCAATGT 58.918 43.478 0.00 0.00 36.25 2.71
226 229 2.481289 AACCTTTAGCCAGAGTGCTC 57.519 50.000 0.00 0.00 41.68 4.26
380 383 1.658686 GATCGGGGGATCGGAGATCG 61.659 65.000 4.23 0.00 45.12 3.69
392 395 0.674534 GTGCTAGTAGTGGATCGGGG 59.325 60.000 0.00 0.00 0.00 5.73
440 443 3.707611 GGTTAGGGTTTTGGTTTGGAGTT 59.292 43.478 0.00 0.00 0.00 3.01
441 444 3.052414 AGGTTAGGGTTTTGGTTTGGAGT 60.052 43.478 0.00 0.00 0.00 3.85
463 466 0.895530 CTTGGGGTTAGTGAGCTCGA 59.104 55.000 9.64 0.00 0.00 4.04
465 468 0.253327 CCCTTGGGGTTAGTGAGCTC 59.747 60.000 6.82 6.82 38.25 4.09
467 470 1.378646 GCCCTTGGGGTTAGTGAGC 60.379 63.158 7.91 0.00 46.51 4.26
471 474 1.498176 GGTCTGCCCTTGGGGTTAGT 61.498 60.000 7.91 0.00 46.51 2.24
473 476 3.503099 GGTCTGCCCTTGGGGTTA 58.497 61.111 7.91 0.00 46.51 2.85
488 492 3.364964 TCCTCCCTCCCATCGGGT 61.365 66.667 0.00 0.00 44.74 5.28
513 517 4.993029 AGACTACTGATCTTTCTTCCCG 57.007 45.455 0.00 0.00 0.00 5.14
516 520 4.564769 CCGCAAGACTACTGATCTTTCTTC 59.435 45.833 0.00 0.00 43.02 2.87
620 624 9.205719 AGTTATTTCTCCTTCGAGAGTTTTTAC 57.794 33.333 2.02 0.00 45.86 2.01
626 630 5.068067 GCCTAGTTATTTCTCCTTCGAGAGT 59.932 44.000 2.02 0.00 45.86 3.24
627 631 5.300792 AGCCTAGTTATTTCTCCTTCGAGAG 59.699 44.000 0.00 0.00 45.86 3.20
628 632 5.067936 CAGCCTAGTTATTTCTCCTTCGAGA 59.932 44.000 0.00 0.00 43.62 4.04
629 633 5.067936 TCAGCCTAGTTATTTCTCCTTCGAG 59.932 44.000 0.00 0.00 37.48 4.04
630 634 4.954202 TCAGCCTAGTTATTTCTCCTTCGA 59.046 41.667 0.00 0.00 0.00 3.71
631 635 5.263968 TCAGCCTAGTTATTTCTCCTTCG 57.736 43.478 0.00 0.00 0.00 3.79
632 636 7.770897 TCAAATCAGCCTAGTTATTTCTCCTTC 59.229 37.037 0.00 0.00 0.00 3.46
633 637 7.633789 TCAAATCAGCCTAGTTATTTCTCCTT 58.366 34.615 0.00 0.00 0.00 3.36
634 638 7.092668 ACTCAAATCAGCCTAGTTATTTCTCCT 60.093 37.037 0.00 0.00 0.00 3.69
635 639 7.051000 ACTCAAATCAGCCTAGTTATTTCTCC 58.949 38.462 0.00 0.00 0.00 3.71
636 640 8.499403 AACTCAAATCAGCCTAGTTATTTCTC 57.501 34.615 0.00 0.00 0.00 2.87
641 645 9.905713 TGAAATAACTCAAATCAGCCTAGTTAT 57.094 29.630 0.00 0.00 42.33 1.89
642 646 9.733556 TTGAAATAACTCAAATCAGCCTAGTTA 57.266 29.630 0.00 0.00 37.14 2.24
643 647 8.635765 TTGAAATAACTCAAATCAGCCTAGTT 57.364 30.769 0.00 0.00 32.39 2.24
644 648 8.103305 TCTTGAAATAACTCAAATCAGCCTAGT 58.897 33.333 0.00 0.00 34.96 2.57
645 649 8.498054 TCTTGAAATAACTCAAATCAGCCTAG 57.502 34.615 0.00 0.00 34.96 3.02
646 650 8.862325 TTCTTGAAATAACTCAAATCAGCCTA 57.138 30.769 0.00 0.00 34.96 3.93
647 651 7.765695 TTCTTGAAATAACTCAAATCAGCCT 57.234 32.000 0.00 0.00 34.96 4.58
648 652 8.992835 ATTTCTTGAAATAACTCAAATCAGCC 57.007 30.769 6.79 0.00 34.96 4.85
649 653 9.630098 TGATTTCTTGAAATAACTCAAATCAGC 57.370 29.630 8.38 0.00 34.96 4.26
689 693 8.750515 ACCCAATTCAATTTCAGTTGATTTTT 57.249 26.923 0.00 0.00 37.88 1.94
690 694 7.171337 CGACCCAATTCAATTTCAGTTGATTTT 59.829 33.333 0.00 0.00 37.88 1.82
691 695 6.646240 CGACCCAATTCAATTTCAGTTGATTT 59.354 34.615 0.00 0.00 37.88 2.17
692 696 6.015519 TCGACCCAATTCAATTTCAGTTGATT 60.016 34.615 0.00 0.00 37.88 2.57
693 697 5.476599 TCGACCCAATTCAATTTCAGTTGAT 59.523 36.000 0.00 0.00 37.88 2.57
694 698 4.824537 TCGACCCAATTCAATTTCAGTTGA 59.175 37.500 0.00 0.00 36.38 3.18
695 699 5.119931 TCGACCCAATTCAATTTCAGTTG 57.880 39.130 0.00 0.00 0.00 3.16
696 700 5.476599 TGATCGACCCAATTCAATTTCAGTT 59.523 36.000 0.00 0.00 0.00 3.16
697 701 5.009631 TGATCGACCCAATTCAATTTCAGT 58.990 37.500 0.00 0.00 0.00 3.41
698 702 5.565592 TGATCGACCCAATTCAATTTCAG 57.434 39.130 0.00 0.00 0.00 3.02
699 703 5.973899 TTGATCGACCCAATTCAATTTCA 57.026 34.783 0.00 0.00 0.00 2.69
702 706 9.889128 ATTAAAATTGATCGACCCAATTCAATT 57.111 25.926 20.88 17.54 45.74 2.32
703 707 9.889128 AATTAAAATTGATCGACCCAATTCAAT 57.111 25.926 20.88 19.05 41.71 2.57
704 708 9.149225 CAATTAAAATTGATCGACCCAATTCAA 57.851 29.630 20.88 18.14 46.72 2.69
705 709 8.310382 ACAATTAAAATTGATCGACCCAATTCA 58.690 29.630 20.88 12.98 46.72 2.57
706 710 8.702163 ACAATTAAAATTGATCGACCCAATTC 57.298 30.769 20.88 1.96 46.72 2.17
707 711 9.581099 GTACAATTAAAATTGATCGACCCAATT 57.419 29.630 19.53 17.11 46.72 2.32
708 712 8.966868 AGTACAATTAAAATTGATCGACCCAAT 58.033 29.630 19.53 8.56 46.72 3.16
709 713 8.343168 AGTACAATTAAAATTGATCGACCCAA 57.657 30.769 19.53 4.79 46.72 4.12
710 714 7.931578 AGTACAATTAAAATTGATCGACCCA 57.068 32.000 19.53 0.00 46.72 4.51
770 774 4.053009 TCCTGATCTGATGGACCGATAT 57.947 45.455 0.38 0.00 0.00 1.63
775 779 4.428294 TTGATTCCTGATCTGATGGACC 57.572 45.455 0.38 0.00 35.69 4.46
780 784 5.541953 TCGTCATTGATTCCTGATCTGAT 57.458 39.130 0.38 0.00 35.69 2.90
782 786 5.756833 TGATTCGTCATTGATTCCTGATCTG 59.243 40.000 0.00 0.00 35.69 2.90
783 787 5.922053 TGATTCGTCATTGATTCCTGATCT 58.078 37.500 0.00 0.00 35.69 2.75
789 793 5.582269 TGAGTTCTGATTCGTCATTGATTCC 59.418 40.000 0.00 0.00 0.00 3.01
790 794 6.312426 ACTGAGTTCTGATTCGTCATTGATTC 59.688 38.462 0.00 0.00 0.00 2.52
797 801 3.305403 GGTCACTGAGTTCTGATTCGTCA 60.305 47.826 0.00 0.00 0.00 4.35
799 803 2.028930 GGGTCACTGAGTTCTGATTCGT 60.029 50.000 0.00 0.00 0.00 3.85
807 811 5.241506 TGATTGAATTTGGGTCACTGAGTTC 59.758 40.000 0.00 0.00 0.00 3.01
814 818 5.240121 AGCAATTGATTGAATTTGGGTCAC 58.760 37.500 10.34 0.00 40.14 3.67
818 822 6.632909 TGTAGAGCAATTGATTGAATTTGGG 58.367 36.000 10.34 0.00 40.14 4.12
827 831 2.991250 ACCGCTGTAGAGCAATTGATT 58.009 42.857 12.91 0.00 46.62 2.57
828 832 2.698855 ACCGCTGTAGAGCAATTGAT 57.301 45.000 12.91 1.34 46.62 2.57
829 833 2.346803 GAACCGCTGTAGAGCAATTGA 58.653 47.619 12.91 0.00 46.62 2.57
830 834 1.398390 GGAACCGCTGTAGAGCAATTG 59.602 52.381 12.91 0.00 46.62 2.32
831 835 1.279271 AGGAACCGCTGTAGAGCAATT 59.721 47.619 12.91 5.01 46.62 2.32
832 836 0.905357 AGGAACCGCTGTAGAGCAAT 59.095 50.000 12.91 0.00 46.62 3.56
833 837 0.685097 AAGGAACCGCTGTAGAGCAA 59.315 50.000 12.91 0.00 46.62 3.91
834 838 0.685097 AAAGGAACCGCTGTAGAGCA 59.315 50.000 12.91 0.00 46.62 4.26
836 840 3.870633 AGTAAAGGAACCGCTGTAGAG 57.129 47.619 0.00 0.00 0.00 2.43
837 841 4.612264 AAAGTAAAGGAACCGCTGTAGA 57.388 40.909 0.00 0.00 0.00 2.59
838 842 4.153655 GGAAAAGTAAAGGAACCGCTGTAG 59.846 45.833 0.00 0.00 0.00 2.74
839 843 4.067192 GGAAAAGTAAAGGAACCGCTGTA 58.933 43.478 0.00 0.00 0.00 2.74
840 844 2.882761 GGAAAAGTAAAGGAACCGCTGT 59.117 45.455 0.00 0.00 0.00 4.40
841 845 2.228103 GGGAAAAGTAAAGGAACCGCTG 59.772 50.000 0.00 0.00 0.00 5.18
842 846 2.107726 AGGGAAAAGTAAAGGAACCGCT 59.892 45.455 0.00 0.00 0.00 5.52
843 847 2.486982 GAGGGAAAAGTAAAGGAACCGC 59.513 50.000 0.00 0.00 0.00 5.68
846 858 6.116711 AGAGAGAGGGAAAAGTAAAGGAAC 57.883 41.667 0.00 0.00 0.00 3.62
848 860 4.463186 CGAGAGAGAGGGAAAAGTAAAGGA 59.537 45.833 0.00 0.00 0.00 3.36
861 873 2.003658 GCTGGCTGACGAGAGAGAGG 62.004 65.000 0.00 0.00 0.00 3.69
864 876 2.493973 GGCTGGCTGACGAGAGAG 59.506 66.667 0.00 0.00 0.00 3.20
871 883 1.805945 CTCGTAACGGCTGGCTGAC 60.806 63.158 8.50 0.00 0.00 3.51
873 885 2.509336 CCTCGTAACGGCTGGCTG 60.509 66.667 0.00 0.00 0.00 4.85
1421 1439 0.887387 AACCACAACCAATCCGTCCG 60.887 55.000 0.00 0.00 0.00 4.79
1505 1528 6.149129 TCAGAGTGCGTGAAGTATGATATT 57.851 37.500 0.00 0.00 0.00 1.28
1510 1533 4.259570 CGAAATCAGAGTGCGTGAAGTATG 60.260 45.833 0.00 0.00 0.00 2.39
1516 1539 2.148916 AACGAAATCAGAGTGCGTGA 57.851 45.000 4.25 0.00 35.16 4.35
1547 1570 1.464608 CACACCATCACAATCCACGAC 59.535 52.381 0.00 0.00 0.00 4.34
1598 1621 4.825085 GGCATCGGGTATCCTCATTAAAAA 59.175 41.667 0.00 0.00 0.00 1.94
1599 1622 4.394729 GGCATCGGGTATCCTCATTAAAA 58.605 43.478 0.00 0.00 0.00 1.52
1600 1623 3.244770 GGGCATCGGGTATCCTCATTAAA 60.245 47.826 0.00 0.00 0.00 1.52
1601 1624 2.304761 GGGCATCGGGTATCCTCATTAA 59.695 50.000 0.00 0.00 0.00 1.40
1602 1625 1.906574 GGGCATCGGGTATCCTCATTA 59.093 52.381 0.00 0.00 0.00 1.90
1603 1626 0.693049 GGGCATCGGGTATCCTCATT 59.307 55.000 0.00 0.00 0.00 2.57
1604 1627 0.178891 AGGGCATCGGGTATCCTCAT 60.179 55.000 0.00 0.00 0.00 2.90
1605 1628 1.121407 CAGGGCATCGGGTATCCTCA 61.121 60.000 0.00 0.00 0.00 3.86
1606 1629 0.832135 TCAGGGCATCGGGTATCCTC 60.832 60.000 0.00 0.00 0.00 3.71
1607 1630 0.178891 ATCAGGGCATCGGGTATCCT 60.179 55.000 0.00 0.00 0.00 3.24
1608 1631 1.568504 TATCAGGGCATCGGGTATCC 58.431 55.000 0.00 0.00 0.00 2.59
1609 1632 3.914426 AATATCAGGGCATCGGGTATC 57.086 47.619 0.00 0.00 0.00 2.24
1610 1633 3.330701 ACAAATATCAGGGCATCGGGTAT 59.669 43.478 0.00 0.00 0.00 2.73
1611 1634 2.708861 ACAAATATCAGGGCATCGGGTA 59.291 45.455 0.00 0.00 0.00 3.69
1612 1635 1.494721 ACAAATATCAGGGCATCGGGT 59.505 47.619 0.00 0.00 0.00 5.28
1613 1636 1.881973 CACAAATATCAGGGCATCGGG 59.118 52.381 0.00 0.00 0.00 5.14
1614 1637 2.575532 ACACAAATATCAGGGCATCGG 58.424 47.619 0.00 0.00 0.00 4.18
1615 1638 5.239306 ACAATACACAAATATCAGGGCATCG 59.761 40.000 0.00 0.00 0.00 3.84
1616 1639 6.639632 ACAATACACAAATATCAGGGCATC 57.360 37.500 0.00 0.00 0.00 3.91
1617 1640 7.290061 AGTACAATACACAAATATCAGGGCAT 58.710 34.615 0.00 0.00 0.00 4.40
1821 1883 0.900182 TGACGCCTCACCTCATGTCT 60.900 55.000 0.00 0.00 0.00 3.41
1849 1911 8.196771 ACAACATTATGAACACACAGAAACATT 58.803 29.630 0.00 0.00 0.00 2.71
1942 2012 0.319040 CGATGGTATGGCAGGACTCG 60.319 60.000 0.00 0.00 0.00 4.18
2025 2095 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2026 2096 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2027 2097 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2028 2098 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2029 2099 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2030 2100 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2031 2101 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2032 2102 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2033 2103 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2061 2131 2.821437 AGGCCATGACACTAGTGTAGT 58.179 47.619 27.98 16.50 45.05 2.73
2062 2132 3.895232 AAGGCCATGACACTAGTGTAG 57.105 47.619 27.98 19.35 45.05 2.74
2063 2133 4.161565 CCTAAAGGCCATGACACTAGTGTA 59.838 45.833 27.98 16.29 45.05 2.90
2065 2135 3.535561 CCTAAAGGCCATGACACTAGTG 58.464 50.000 21.44 21.44 0.00 2.74
2066 2136 3.914426 CCTAAAGGCCATGACACTAGT 57.086 47.619 5.01 0.00 0.00 2.57
2098 2168 9.701098 CCCATAATATAAGAGCGTAGTGTAAAA 57.299 33.333 0.00 0.00 0.00 1.52
2099 2169 9.081204 TCCCATAATATAAGAGCGTAGTGTAAA 57.919 33.333 0.00 0.00 0.00 2.01
2100 2170 8.517878 GTCCCATAATATAAGAGCGTAGTGTAA 58.482 37.037 0.00 0.00 0.00 2.41
2101 2171 7.148356 CGTCCCATAATATAAGAGCGTAGTGTA 60.148 40.741 0.00 0.00 0.00 2.90
2102 2172 6.349115 CGTCCCATAATATAAGAGCGTAGTGT 60.349 42.308 0.00 0.00 0.00 3.55
2103 2173 6.028368 CGTCCCATAATATAAGAGCGTAGTG 58.972 44.000 0.00 0.00 0.00 2.74
2104 2174 5.125097 CCGTCCCATAATATAAGAGCGTAGT 59.875 44.000 0.00 0.00 0.00 2.73
2105 2175 5.356190 TCCGTCCCATAATATAAGAGCGTAG 59.644 44.000 0.00 0.00 0.00 3.51
2106 2176 5.255687 TCCGTCCCATAATATAAGAGCGTA 58.744 41.667 0.00 0.00 0.00 4.42
2107 2177 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2108 2178 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2109 2179 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2110 2180 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2111 2181 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2112 2182 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2113 2183 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2114 2184 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2115 2185 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2116 2186 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
2117 2187 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2118 2188 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2119 2189 4.474303 TTATTACTCCCTCCGTCCCATA 57.526 45.455 0.00 0.00 0.00 2.74
2120 2190 3.339713 TTATTACTCCCTCCGTCCCAT 57.660 47.619 0.00 0.00 0.00 4.00
2121 2191 2.852714 TTATTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2122 2192 7.486407 TTATAATTATTACTCCCTCCGTCCC 57.514 40.000 2.68 0.00 0.00 4.46
2201 2289 3.788227 ACAGCACCCACTGAGATAAAA 57.212 42.857 0.00 0.00 40.25 1.52
2202 2290 4.901197 TTACAGCACCCACTGAGATAAA 57.099 40.909 0.00 0.00 40.25 1.40
2203 2291 4.901197 TTTACAGCACCCACTGAGATAA 57.099 40.909 0.00 0.00 40.25 1.75
2204 2292 6.553953 TTATTTACAGCACCCACTGAGATA 57.446 37.500 0.00 0.00 40.25 1.98
2246 2334 6.613679 TCTCAAGGTTATCCCACATATACACA 59.386 38.462 0.00 0.00 34.66 3.72
2407 2495 7.156876 TCCAGCAAAACAATGTTAGAATAGG 57.843 36.000 0.00 0.00 0.00 2.57
2410 2498 7.363793 GGGTATCCAGCAAAACAATGTTAGAAT 60.364 37.037 0.00 0.00 0.00 2.40
2910 2998 4.012374 CACAGCTTCACATGGTTAGGATT 58.988 43.478 0.00 0.00 0.00 3.01
2977 3065 0.038166 GTGACCATGGAAAGGAGCCA 59.962 55.000 21.47 0.07 40.24 4.75
3156 3251 4.574892 TGATCAAGAGGTTTCATTACGCA 58.425 39.130 0.00 0.00 0.00 5.24
3275 3370 7.809806 ACTAAGGAATTTTTCGAAAGATTGCTG 59.190 33.333 33.48 26.78 39.21 4.41
3303 3398 8.833493 GGTAGCACAAATTCGGTAAATACTAAT 58.167 33.333 0.00 0.00 0.00 1.73
3424 3530 2.062971 ACATGATTCCATCCAGCACC 57.937 50.000 0.00 0.00 0.00 5.01
3438 3544 3.264574 GCCCAAAGCACCTACATGA 57.735 52.632 0.00 0.00 42.97 3.07
3453 3559 0.324943 TAAACTGAGCTGGAGTGCCC 59.675 55.000 0.00 0.00 0.00 5.36
3517 3623 4.634443 ACTATCACCACCGCAATTTCTTAC 59.366 41.667 0.00 0.00 0.00 2.34
4101 4209 7.942341 TCAAACAGGAACTCACTAACCATATTT 59.058 33.333 0.00 0.00 34.60 1.40
4116 4224 7.506328 AAGTACAACCTAATCAAACAGGAAC 57.494 36.000 0.00 0.00 35.76 3.62
4349 4461 2.334006 ACCTCTTGAGGATGGTCAGT 57.666 50.000 22.10 0.00 0.00 3.41
4350 4462 3.131933 CACTACCTCTTGAGGATGGTCAG 59.868 52.174 22.10 10.97 34.33 3.51
4351 4463 3.099905 CACTACCTCTTGAGGATGGTCA 58.900 50.000 22.10 1.04 34.33 4.02
4352 4464 2.159028 GCACTACCTCTTGAGGATGGTC 60.159 54.545 22.10 5.68 34.33 4.02
4353 4465 1.834263 GCACTACCTCTTGAGGATGGT 59.166 52.381 22.10 13.66 36.66 3.55
4354 4466 1.833630 TGCACTACCTCTTGAGGATGG 59.166 52.381 22.10 13.12 0.00 3.51
4355 4467 3.464907 CATGCACTACCTCTTGAGGATG 58.535 50.000 22.10 16.45 0.00 3.51
4356 4468 2.158842 GCATGCACTACCTCTTGAGGAT 60.159 50.000 22.10 9.66 0.00 3.24
4357 4469 1.208052 GCATGCACTACCTCTTGAGGA 59.792 52.381 22.10 6.23 0.00 3.71
4358 4470 1.661341 GCATGCACTACCTCTTGAGG 58.339 55.000 14.21 14.58 0.00 3.86
4359 4471 1.661341 GGCATGCACTACCTCTTGAG 58.339 55.000 21.36 0.00 0.00 3.02
4360 4472 0.108186 CGGCATGCACTACCTCTTGA 60.108 55.000 21.36 0.00 0.00 3.02
4361 4473 1.091771 CCGGCATGCACTACCTCTTG 61.092 60.000 21.36 0.00 0.00 3.02
4362 4474 1.221840 CCGGCATGCACTACCTCTT 59.778 57.895 21.36 0.00 0.00 2.85
4363 4475 1.050988 ATCCGGCATGCACTACCTCT 61.051 55.000 21.36 0.00 0.00 3.69
4364 4476 0.601311 GATCCGGCATGCACTACCTC 60.601 60.000 21.36 4.33 0.00 3.85
4365 4477 1.337384 TGATCCGGCATGCACTACCT 61.337 55.000 21.36 0.00 0.00 3.08
4366 4478 0.882042 CTGATCCGGCATGCACTACC 60.882 60.000 21.36 5.87 0.00 3.18
4367 4479 0.104855 TCTGATCCGGCATGCACTAC 59.895 55.000 21.36 7.07 0.00 2.73
4368 4480 1.051008 ATCTGATCCGGCATGCACTA 58.949 50.000 21.36 3.57 0.00 2.74
4369 4481 0.534427 CATCTGATCCGGCATGCACT 60.534 55.000 21.36 0.00 0.00 4.40
4370 4482 1.947013 CATCTGATCCGGCATGCAC 59.053 57.895 21.36 8.08 0.00 4.57
4371 4483 1.895231 GCATCTGATCCGGCATGCA 60.895 57.895 21.36 0.00 41.16 3.96
4372 4484 2.952245 GCATCTGATCCGGCATGC 59.048 61.111 9.90 9.90 35.23 4.06
4373 4485 2.322830 CCGCATCTGATCCGGCATG 61.323 63.158 7.14 0.00 35.14 4.06
4374 4486 2.031616 CCGCATCTGATCCGGCAT 59.968 61.111 7.14 0.00 35.14 4.40
4375 4487 3.153781 TCCGCATCTGATCCGGCA 61.154 61.111 15.12 1.92 41.68 5.69
4376 4488 2.356793 CTCCGCATCTGATCCGGC 60.357 66.667 15.12 1.84 41.68 6.13
4377 4489 2.203082 TCCTCCGCATCTGATCCGG 61.203 63.158 13.82 13.82 43.21 5.14
4378 4490 1.006805 GTCCTCCGCATCTGATCCG 60.007 63.158 0.00 0.00 0.00 4.18
4379 4491 1.118356 AGGTCCTCCGCATCTGATCC 61.118 60.000 0.00 0.00 39.05 3.36
4380 4492 0.033228 CAGGTCCTCCGCATCTGATC 59.967 60.000 0.00 0.00 39.05 2.92
4381 4493 2.037620 GCAGGTCCTCCGCATCTGAT 62.038 60.000 0.00 0.00 39.05 2.90
4382 4494 2.725312 GCAGGTCCTCCGCATCTGA 61.725 63.158 0.00 0.00 39.05 3.27
4383 4495 2.202987 GCAGGTCCTCCGCATCTG 60.203 66.667 0.00 0.00 39.05 2.90
4384 4496 2.068821 ATGCAGGTCCTCCGCATCT 61.069 57.895 10.26 0.00 44.17 2.90
4385 4497 2.507944 ATGCAGGTCCTCCGCATC 59.492 61.111 10.26 0.00 44.17 3.91
4387 4499 2.123248 TTTGATGCAGGTCCTCCGCA 62.123 55.000 6.37 6.37 43.16 5.69
4388 4500 1.377202 TTTGATGCAGGTCCTCCGC 60.377 57.895 0.00 0.00 39.05 5.54
4389 4501 0.036010 AGTTTGATGCAGGTCCTCCG 60.036 55.000 0.00 0.00 39.05 4.63
4390 4502 1.003580 TCAGTTTGATGCAGGTCCTCC 59.996 52.381 0.00 0.00 0.00 4.30
4391 4503 2.079925 GTCAGTTTGATGCAGGTCCTC 58.920 52.381 0.00 0.00 0.00 3.71
4392 4504 1.271597 GGTCAGTTTGATGCAGGTCCT 60.272 52.381 0.00 0.00 0.00 3.85
4393 4505 1.168714 GGTCAGTTTGATGCAGGTCC 58.831 55.000 0.00 0.00 0.00 4.46
4394 4506 1.896220 TGGTCAGTTTGATGCAGGTC 58.104 50.000 0.00 0.00 0.00 3.85
4395 4507 2.440409 GATGGTCAGTTTGATGCAGGT 58.560 47.619 0.00 0.00 0.00 4.00
4396 4508 1.747355 GGATGGTCAGTTTGATGCAGG 59.253 52.381 0.00 0.00 0.00 4.85
4397 4509 2.681848 GAGGATGGTCAGTTTGATGCAG 59.318 50.000 0.00 0.00 0.00 4.41
4398 4510 2.040145 TGAGGATGGTCAGTTTGATGCA 59.960 45.455 0.00 0.00 0.00 3.96
4399 4511 2.715046 TGAGGATGGTCAGTTTGATGC 58.285 47.619 0.00 0.00 0.00 3.91
4400 4512 4.582869 TCTTGAGGATGGTCAGTTTGATG 58.417 43.478 0.00 0.00 0.00 3.07
4401 4513 4.324099 CCTCTTGAGGATGGTCAGTTTGAT 60.324 45.833 11.02 0.00 0.00 2.57
4402 4514 3.008375 CCTCTTGAGGATGGTCAGTTTGA 59.992 47.826 11.02 0.00 0.00 2.69
4403 4515 3.244700 ACCTCTTGAGGATGGTCAGTTTG 60.245 47.826 22.10 0.00 0.00 2.93
4404 4516 2.982488 ACCTCTTGAGGATGGTCAGTTT 59.018 45.455 22.10 0.00 0.00 2.66
4413 4525 4.910304 AGCCATACATTACCTCTTGAGGAT 59.090 41.667 22.10 9.66 0.00 3.24
4433 4545 9.364989 TGAACATAAAATTTGCAGTATTTAGCC 57.635 29.630 8.69 2.15 0.00 3.93
4460 4572 5.940470 GGCTTATTGTTATAGGATGGTCAGG 59.060 44.000 0.00 0.00 0.00 3.86
4485 4597 1.115930 TAGAGGGGCCAGAATCGCTC 61.116 60.000 4.39 0.00 41.43 5.03
4628 4742 3.994392 GGAAACGTCAAGACAGATAAGCA 59.006 43.478 0.72 0.00 0.00 3.91
4691 4805 5.355071 TCAGCAGTATTTTCATTACAGGCAG 59.645 40.000 0.00 0.00 0.00 4.85
4827 4941 2.764439 AGAGGGAAAAACTAGCGGAC 57.236 50.000 0.00 0.00 0.00 4.79
4886 5000 3.431233 CGTCAGCCATATATGTCTGCAAG 59.569 47.826 17.10 8.24 0.00 4.01
4924 5038 2.290323 GCAAGAAGAGGGGTAGAAAGCA 60.290 50.000 0.00 0.00 0.00 3.91
5053 5168 7.573710 AGGATTCTATGCAGTGGTAATACAAA 58.426 34.615 0.00 0.00 0.00 2.83
5113 5228 5.512232 GGACAGCATATCTAGGAAAGGGAAG 60.512 48.000 0.00 0.00 0.00 3.46
5319 5446 1.166989 TCCATGCGTACGTGACTACA 58.833 50.000 17.90 5.26 34.49 2.74
5350 5477 5.491323 TGATGCACGATATATAAACCCCA 57.509 39.130 0.00 0.00 0.00 4.96
5364 5491 5.215239 TGTACATAACACAATGATGCACG 57.785 39.130 0.00 0.00 31.43 5.34
5389 5521 3.207265 AGGAGCATAACACAACACACA 57.793 42.857 0.00 0.00 0.00 3.72
5406 5538 0.460811 CTCACGCAGCAGCATAAGGA 60.461 55.000 0.82 0.00 42.27 3.36
5407 5539 0.460811 TCTCACGCAGCAGCATAAGG 60.461 55.000 0.82 0.00 42.27 2.69
5408 5540 1.061711 GTTCTCACGCAGCAGCATAAG 59.938 52.381 0.82 0.00 42.27 1.73
5409 5541 1.078709 GTTCTCACGCAGCAGCATAA 58.921 50.000 0.82 0.00 42.27 1.90
5434 5566 6.705782 ACGACATGATTTGCTATTTTCGTAG 58.294 36.000 0.00 0.00 35.55 3.51
5508 5640 2.698855 ATCAACGACCCTTGATCCTG 57.301 50.000 0.00 0.00 36.32 3.86
5534 5669 9.257651 GTTTTACCCATACTACAATGCTAGTAG 57.742 37.037 8.56 8.56 43.51 2.57
5535 5670 7.922278 CGTTTTACCCATACTACAATGCTAGTA 59.078 37.037 0.00 5.61 34.43 1.82
5536 5671 6.759827 CGTTTTACCCATACTACAATGCTAGT 59.240 38.462 0.00 2.24 0.00 2.57
5537 5672 6.202188 CCGTTTTACCCATACTACAATGCTAG 59.798 42.308 0.00 0.00 0.00 3.42
5554 5689 6.846350 TCAGCTAGTACTTCTACCGTTTTAC 58.154 40.000 0.00 0.00 0.00 2.01
5575 5710 3.885484 ATTGCGTCACTTGTTCTTCAG 57.115 42.857 0.00 0.00 0.00 3.02
5617 5753 3.474600 TCACCGAAACCGAATAAACCAA 58.525 40.909 0.00 0.00 0.00 3.67
5646 5782 9.457436 ACGTTTACTTATCAACTGGGAATAATT 57.543 29.630 0.00 0.00 0.00 1.40
5655 5791 7.005380 CCGTTTGTACGTTTACTTATCAACTG 58.995 38.462 0.00 0.00 46.20 3.16
5658 5794 5.464722 TGCCGTTTGTACGTTTACTTATCAA 59.535 36.000 0.00 0.00 46.20 2.57
5774 5916 4.735338 GCTGTCAAGTTTAAGTTTCACTGC 59.265 41.667 7.18 7.18 0.00 4.40
5817 5970 2.660572 TCTGCTCTCCTACTCCATGAC 58.339 52.381 0.00 0.00 0.00 3.06
5819 5972 2.299582 CCATCTGCTCTCCTACTCCATG 59.700 54.545 0.00 0.00 0.00 3.66
5820 5973 2.178764 TCCATCTGCTCTCCTACTCCAT 59.821 50.000 0.00 0.00 0.00 3.41
5821 5974 1.570979 TCCATCTGCTCTCCTACTCCA 59.429 52.381 0.00 0.00 0.00 3.86
5838 6023 1.402896 GCCATCCGTCTCCATCTCCA 61.403 60.000 0.00 0.00 0.00 3.86
5848 6038 1.212751 GTTGCCTTTGCCATCCGTC 59.787 57.895 0.00 0.00 36.33 4.79
5850 6040 1.173043 TAAGTTGCCTTTGCCATCCG 58.827 50.000 0.00 0.00 36.33 4.18
5870 6060 2.716217 GTGGCTTCCAGCAGAACTAAT 58.284 47.619 0.00 0.00 44.75 1.73
6037 6227 2.806856 CGATGCAGAAGGTGAGCGC 61.807 63.158 0.00 0.00 0.00 5.92
6038 6228 2.806856 GCGATGCAGAAGGTGAGCG 61.807 63.158 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.