Multiple sequence alignment - TraesCS7A01G233800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G233800 chr7A 100.000 5160 0 0 1273 6432 205488971 205483812 0.000000e+00 9529.0
1 TraesCS7A01G233800 chr7A 100.000 1105 0 0 1 1105 205490243 205489139 0.000000e+00 2041.0
2 TraesCS7A01G233800 chr7A 99.135 925 8 0 1 925 36090916 36089992 0.000000e+00 1664.0
3 TraesCS7A01G233800 chr7A 93.846 65 3 1 2558 2621 205487627 205487563 5.310000e-16 97.1
4 TraesCS7A01G233800 chr7A 93.846 65 3 1 2617 2681 205487686 205487623 5.310000e-16 97.1
5 TraesCS7A01G233800 chr7D 95.907 3714 95 20 1770 5440 195651062 195647363 0.000000e+00 5963.0
6 TraesCS7A01G233800 chr7D 95.861 459 12 2 1273 1730 195651520 195651068 0.000000e+00 736.0
7 TraesCS7A01G233800 chr7D 85.096 416 39 9 6030 6432 195647002 195646597 2.790000e-108 403.0
8 TraesCS7A01G233800 chr7D 98.039 153 3 0 922 1074 195651683 195651531 3.820000e-67 267.0
9 TraesCS7A01G233800 chr7D 93.750 64 4 0 2558 2621 195650211 195650148 5.310000e-16 97.1
10 TraesCS7A01G233800 chr7D 91.304 69 4 2 5769 5836 3598834 3598767 6.870000e-15 93.5
11 TraesCS7A01G233800 chr7B 95.005 3063 86 23 2430 5440 159527937 159524890 0.000000e+00 4747.0
12 TraesCS7A01G233800 chr7B 94.574 1161 32 8 1273 2420 159529130 159527988 0.000000e+00 1766.0
13 TraesCS7A01G233800 chr7B 99.676 925 3 0 1 925 639544688 639545612 0.000000e+00 1692.0
14 TraesCS7A01G233800 chr7B 97.792 770 17 0 161 930 412340896 412340127 0.000000e+00 1328.0
15 TraesCS7A01G233800 chr7B 98.925 93 1 0 922 1014 159529623 159529531 3.990000e-37 167.0
16 TraesCS7A01G233800 chr7B 95.312 64 3 0 2558 2621 159527746 159527683 1.140000e-17 102.0
17 TraesCS7A01G233800 chr7B 93.750 64 3 1 2617 2680 159527805 159527743 1.910000e-15 95.3
18 TraesCS7A01G233800 chr2A 99.677 930 3 0 1 930 34510215 34511144 0.000000e+00 1701.0
19 TraesCS7A01G233800 chr2A 99.139 929 7 1 1 929 181012355 181011428 0.000000e+00 1670.0
20 TraesCS7A01G233800 chr2A 94.681 94 5 0 5679 5772 637677289 637677196 5.200000e-31 147.0
21 TraesCS7A01G233800 chr2A 93.000 100 5 2 5672 5771 604991543 604991640 1.870000e-30 145.0
22 TraesCS7A01G233800 chr4B 99.354 929 5 1 1 929 584946825 584947752 0.000000e+00 1681.0
23 TraesCS7A01G233800 chr4B 86.039 924 126 2 1 924 581529878 581528958 0.000000e+00 989.0
24 TraesCS7A01G233800 chr4B 76.923 377 78 8 4393 4764 193996247 193995875 8.450000e-49 206.0
25 TraesCS7A01G233800 chr4B 97.895 95 2 0 5606 5700 210282887 210282793 1.430000e-36 165.0
26 TraesCS7A01G233800 chr3B 96.017 929 36 1 1 929 14386616 14387543 0.000000e+00 1509.0
27 TraesCS7A01G233800 chr3B 98.925 93 1 0 5608 5700 45520878 45520786 3.990000e-37 167.0
28 TraesCS7A01G233800 chr3B 94.000 100 4 2 5672 5771 125525709 125525806 4.020000e-32 150.0
29 TraesCS7A01G233800 chrUn 100.000 506 0 0 1 506 392184394 392184899 0.000000e+00 935.0
30 TraesCS7A01G233800 chrUn 93.519 108 7 0 5593 5700 30405437 30405330 1.860000e-35 161.0
31 TraesCS7A01G233800 chr2D 86.074 596 81 2 330 925 583906485 583907078 1.960000e-179 640.0
32 TraesCS7A01G233800 chr4A 78.522 433 77 11 4393 4811 396759850 396759420 2.960000e-68 270.0
33 TraesCS7A01G233800 chr4A 93.000 100 5 2 5679 5777 685375275 685375177 1.870000e-30 145.0
34 TraesCS7A01G233800 chr4A 86.567 67 7 2 5771 5836 642847239 642847174 8.950000e-09 73.1
35 TraesCS7A01G233800 chr2B 94.479 163 9 0 5608 5770 425441187 425441349 1.070000e-62 252.0
36 TraesCS7A01G233800 chr2B 87.037 162 17 4 5609 5768 425441347 425441188 5.120000e-41 180.0
37 TraesCS7A01G233800 chr2B 98.925 93 1 0 5608 5700 590923787 590923695 3.990000e-37 167.0
38 TraesCS7A01G233800 chr2B 95.876 97 4 0 5604 5700 692126805 692126901 2.400000e-34 158.0
39 TraesCS7A01G233800 chr6B 96.078 102 4 0 5599 5700 39364840 39364739 3.990000e-37 167.0
40 TraesCS7A01G233800 chr6B 95.122 41 1 1 5798 5837 46851243 46851283 5.380000e-06 63.9
41 TraesCS7A01G233800 chr5A 98.925 93 1 0 5608 5700 581101954 581102046 3.990000e-37 167.0
42 TraesCS7A01G233800 chr5A 93.069 101 5 2 5672 5772 655997670 655997768 5.200000e-31 147.0
43 TraesCS7A01G233800 chr5A 92.857 98 7 0 5691 5788 619719133 619719036 6.720000e-30 143.0
44 TraesCS7A01G233800 chr6A 90.000 70 5 2 5768 5836 158314996 158315064 8.880000e-14 89.8
45 TraesCS7A01G233800 chr6A 86.567 67 7 2 5771 5836 455456065 455456000 8.950000e-09 73.1
46 TraesCS7A01G233800 chr5D 86.765 68 7 2 5771 5837 364733047 364732981 2.490000e-09 75.0
47 TraesCS7A01G233800 chr3A 85.333 75 4 4 5768 5836 142581541 142581614 3.220000e-08 71.3
48 TraesCS7A01G233800 chr3D 85.075 67 8 2 5771 5836 604535212 604535147 4.160000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G233800 chr7A 205483812 205490243 6431 True 2941.05 9529 96.9230 1 6432 4 chr7A.!!$R2 6431
1 TraesCS7A01G233800 chr7A 36089992 36090916 924 True 1664.00 1664 99.1350 1 925 1 chr7A.!!$R1 924
2 TraesCS7A01G233800 chr7D 195646597 195651683 5086 True 1493.22 5963 93.7306 922 6432 5 chr7D.!!$R2 5510
3 TraesCS7A01G233800 chr7B 639544688 639545612 924 False 1692.00 1692 99.6760 1 925 1 chr7B.!!$F1 924
4 TraesCS7A01G233800 chr7B 159524890 159529623 4733 True 1375.46 4747 95.5132 922 5440 5 chr7B.!!$R2 4518
5 TraesCS7A01G233800 chr7B 412340127 412340896 769 True 1328.00 1328 97.7920 161 930 1 chr7B.!!$R1 769
6 TraesCS7A01G233800 chr2A 34510215 34511144 929 False 1701.00 1701 99.6770 1 930 1 chr2A.!!$F1 929
7 TraesCS7A01G233800 chr2A 181011428 181012355 927 True 1670.00 1670 99.1390 1 929 1 chr2A.!!$R1 928
8 TraesCS7A01G233800 chr4B 584946825 584947752 927 False 1681.00 1681 99.3540 1 929 1 chr4B.!!$F1 928
9 TraesCS7A01G233800 chr4B 581528958 581529878 920 True 989.00 989 86.0390 1 924 1 chr4B.!!$R3 923
10 TraesCS7A01G233800 chr3B 14386616 14387543 927 False 1509.00 1509 96.0170 1 929 1 chr3B.!!$F1 928
11 TraesCS7A01G233800 chrUn 392184394 392184899 505 False 935.00 935 100.0000 1 506 1 chrUn.!!$F1 505
12 TraesCS7A01G233800 chr2D 583906485 583907078 593 False 640.00 640 86.0740 330 925 1 chr2D.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 950 1.686052 AGCGGCTCTAAATCTCTCCTG 59.314 52.381 0.00 0.0 0.00 3.86 F
1773 2094 1.065551 AGTTCTCGTTTTGTTGCTGGC 59.934 47.619 0.00 0.0 0.00 4.85 F
1774 2095 1.065551 GTTCTCGTTTTGTTGCTGGCT 59.934 47.619 0.00 0.0 0.00 4.75 F
2334 2667 1.138266 GTCCGTCCATGCTTAGCCTTA 59.862 52.381 0.29 0.0 0.00 2.69 F
4139 4565 2.345244 CGCTGCCAGAGACTTGGT 59.655 61.111 0.00 0.0 40.49 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2897 3278 0.770499 TGGCAGGAACAAGTGGATGA 59.230 50.000 0.00 0.00 0.00 2.92 R
3697 4122 4.040339 TCTGCCATGAAGTTCTGTACAGAA 59.960 41.667 30.07 30.07 44.47 3.02 R
3844 4270 8.729805 AAGTTTCCAACATAATTGCAGAAAAA 57.270 26.923 0.00 0.00 0.00 1.94 R
4287 4713 3.181471 CCTTCAGATTCAGCGAGTGGTAT 60.181 47.826 0.00 0.00 0.00 2.73 R
6181 6688 0.032267 GCCGAGGATACCACTACAGC 59.968 60.000 0.00 0.00 37.17 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
949 950 1.686052 AGCGGCTCTAAATCTCTCCTG 59.314 52.381 0.00 0.00 0.00 3.86
1424 1744 2.696707 ACCGATTAGTTGAATCCCGCTA 59.303 45.455 0.00 0.00 40.94 4.26
1521 1841 3.764434 TCGAGCTTTGTAGAACCTGAGAT 59.236 43.478 0.00 0.00 0.00 2.75
1595 1915 4.332543 GGAATCAGATGTTGCATACGTTCA 59.667 41.667 0.00 0.00 0.00 3.18
1651 1971 6.318900 GCTAGGGTTTTGATTATTACTGCAGT 59.681 38.462 25.12 25.12 0.00 4.40
1666 1986 5.117355 ACTGCAGTGATCAAAGTCAATTG 57.883 39.130 20.97 0.00 0.00 2.32
1745 2066 6.036953 GCATGAACATTCTTCTAGAGTTGGAG 59.963 42.308 0.00 0.00 0.00 3.86
1771 2092 2.097466 ACCAGTTCTCGTTTTGTTGCTG 59.903 45.455 0.00 0.00 0.00 4.41
1772 2093 2.541588 CCAGTTCTCGTTTTGTTGCTGG 60.542 50.000 0.00 0.00 36.68 4.85
1773 2094 1.065551 AGTTCTCGTTTTGTTGCTGGC 59.934 47.619 0.00 0.00 0.00 4.85
1774 2095 1.065551 GTTCTCGTTTTGTTGCTGGCT 59.934 47.619 0.00 0.00 0.00 4.75
1783 2114 4.503741 TTTGTTGCTGGCTTACTGAATC 57.496 40.909 0.00 0.00 0.00 2.52
1801 2132 2.762535 TCTAGTTTCCTTGCCTTCCG 57.237 50.000 0.00 0.00 0.00 4.30
2043 2375 7.370383 ACACTGTTGATGGTTTGATTAATCAC 58.630 34.615 17.76 7.52 36.36 3.06
2272 2605 7.235935 TCTTTTGTCCTTTTAGACGAGGATA 57.764 36.000 0.00 0.00 43.54 2.59
2317 2650 2.029020 TGATGTACAGTGCTGTCTGTCC 60.029 50.000 8.23 3.80 45.79 4.02
2334 2667 1.138266 GTCCGTCCATGCTTAGCCTTA 59.862 52.381 0.29 0.00 0.00 2.69
2479 2853 6.591750 TCCAATTCTATCCCTAATCTCGAC 57.408 41.667 0.00 0.00 0.00 4.20
2538 2913 4.135153 CTCCCTCCACCACGCTCG 62.135 72.222 0.00 0.00 0.00 5.03
2620 2999 7.610305 TGATTTGGAGGAAGGAATTAACTACAC 59.390 37.037 0.00 0.00 0.00 2.90
2662 3041 4.607293 AAAAGAACTCCTTGATTTGGGC 57.393 40.909 0.00 0.00 34.79 5.36
2716 3096 4.538089 AGAGAGAACCCCTAAGCATTTTCT 59.462 41.667 0.00 0.00 0.00 2.52
2948 3337 3.887916 AGGGGGTTTGCTAACTTGTAA 57.112 42.857 10.80 0.00 34.59 2.41
3294 3708 9.476202 GAAATTTATGGCTTTTAACAGACAGTT 57.524 29.630 3.13 0.00 44.27 3.16
3429 3843 6.045955 TCACAAATTACCTTTTTCTTGGTGC 58.954 36.000 0.00 0.00 37.74 5.01
3493 3907 7.072834 ACCCTTCTTCTTTTAACCAAGGTACTA 59.927 37.037 0.00 0.00 38.49 1.82
3616 4032 2.963498 CAGAGCGTGCCAATATGATG 57.037 50.000 0.00 0.00 0.00 3.07
3891 4317 7.722363 ACTTCCACCATTTCTTCGTAAATTTT 58.278 30.769 0.00 0.00 0.00 1.82
4008 4434 4.451435 CGATAAGATCAGACTGCATGCATT 59.549 41.667 22.97 16.79 0.00 3.56
4095 4521 7.231317 TGTGTAATCTTTCTCAGGCTCATTTTT 59.769 33.333 0.00 0.00 0.00 1.94
4139 4565 2.345244 CGCTGCCAGAGACTTGGT 59.655 61.111 0.00 0.00 40.49 3.67
4287 4713 0.251297 CCATCCTGGTTCCAGTGCAA 60.251 55.000 16.33 1.57 31.35 4.08
4296 4722 1.732259 GTTCCAGTGCAATACCACTCG 59.268 52.381 0.00 0.00 43.85 4.18
4334 4760 2.961526 TGAAGTACGAAGGAGATGGC 57.038 50.000 0.00 0.00 0.00 4.40
4610 5036 1.569479 GAAGCAGTCAAGGTCGCACC 61.569 60.000 0.00 0.00 38.99 5.01
4709 5135 0.466372 TTTGCATTGGACACGGTGGA 60.466 50.000 13.48 0.00 0.00 4.02
4775 5201 2.286294 GCGGAGTGATAACTGCATCAAG 59.714 50.000 2.24 0.00 36.71 3.02
4871 5297 2.119655 CAGGAAGAGCATGCTGGGC 61.120 63.158 28.27 11.27 35.36 5.36
4929 5355 2.356667 GGGCCAAGAAGTCTGGGG 59.643 66.667 4.39 0.00 37.55 4.96
4969 5395 0.606673 AAGAGGGCAAAGAAGACGGC 60.607 55.000 0.00 0.00 0.00 5.68
5016 5442 0.325272 TGTTACCATGCCCGCTGTAA 59.675 50.000 0.00 0.00 0.00 2.41
5024 5450 1.312371 TGCCCGCTGTAATTTCTGCC 61.312 55.000 8.07 0.00 0.00 4.85
5027 5453 1.299541 CCGCTGTAATTTCTGCCGAT 58.700 50.000 8.07 0.00 0.00 4.18
5081 5507 2.047560 GTTCCGGACCGTCCCAAG 60.048 66.667 13.94 1.48 31.13 3.61
5281 5707 7.497579 TGTCTGCATAGAGTTGTCAAACTAAAA 59.502 33.333 0.00 0.00 46.84 1.52
5335 5761 5.774630 GGATCTTAGGAGTTTAGTGATCCG 58.225 45.833 0.00 0.00 39.03 4.18
5350 5776 2.223947 TGATCCGGTGTCCATATGAACG 60.224 50.000 3.65 0.00 0.00 3.95
5440 5868 5.915758 GCACATTGTGGTTTACATTTCGTTA 59.084 36.000 18.05 0.00 39.48 3.18
5441 5869 6.584563 GCACATTGTGGTTTACATTTCGTTAT 59.415 34.615 18.05 0.00 39.48 1.89
5442 5870 7.751348 GCACATTGTGGTTTACATTTCGTTATA 59.249 33.333 18.05 0.00 39.48 0.98
5443 5871 9.613957 CACATTGTGGTTTACATTTCGTTATAA 57.386 29.630 9.00 0.00 39.48 0.98
5444 5872 9.615295 ACATTGTGGTTTACATTTCGTTATAAC 57.385 29.630 5.47 5.47 39.48 1.89
5445 5873 9.834628 CATTGTGGTTTACATTTCGTTATAACT 57.165 29.630 13.56 0.00 39.48 2.24
5446 5874 9.834628 ATTGTGGTTTACATTTCGTTATAACTG 57.165 29.630 13.56 7.42 39.48 3.16
5447 5875 7.299586 TGTGGTTTACATTTCGTTATAACTGC 58.700 34.615 13.56 0.00 33.42 4.40
5448 5876 7.041303 TGTGGTTTACATTTCGTTATAACTGCA 60.041 33.333 13.56 0.00 33.42 4.41
5449 5877 7.269724 GTGGTTTACATTTCGTTATAACTGCAC 59.730 37.037 13.56 4.84 0.00 4.57
5450 5878 7.041303 TGGTTTACATTTCGTTATAACTGCACA 60.041 33.333 13.56 0.00 0.00 4.57
5451 5879 7.966204 GGTTTACATTTCGTTATAACTGCACAT 59.034 33.333 13.56 0.00 0.00 3.21
5452 5880 9.337091 GTTTACATTTCGTTATAACTGCACATT 57.663 29.630 13.56 0.00 0.00 2.71
5453 5881 8.888332 TTACATTTCGTTATAACTGCACATTG 57.112 30.769 13.56 5.05 0.00 2.82
5454 5882 6.908825 ACATTTCGTTATAACTGCACATTGT 58.091 32.000 13.56 5.58 0.00 2.71
5455 5883 6.801377 ACATTTCGTTATAACTGCACATTGTG 59.199 34.615 12.54 12.54 36.51 3.33
5456 5884 4.937696 TCGTTATAACTGCACATTGTGG 57.062 40.909 18.05 5.32 33.64 4.17
5457 5885 4.320023 TCGTTATAACTGCACATTGTGGT 58.680 39.130 18.05 5.95 33.64 4.16
5458 5886 5.480205 TCGTTATAACTGCACATTGTGGTA 58.520 37.500 18.05 0.00 33.64 3.25
5459 5887 6.110033 TCGTTATAACTGCACATTGTGGTAT 58.890 36.000 18.05 3.99 33.64 2.73
5460 5888 7.266400 TCGTTATAACTGCACATTGTGGTATA 58.734 34.615 18.05 3.07 33.64 1.47
5461 5889 7.223193 TCGTTATAACTGCACATTGTGGTATAC 59.777 37.037 18.05 0.00 33.64 1.47
5462 5890 7.010645 CGTTATAACTGCACATTGTGGTATACA 59.989 37.037 18.05 6.43 37.56 2.29
5463 5891 8.836413 GTTATAACTGCACATTGTGGTATACAT 58.164 33.333 18.05 4.23 39.48 2.29
5464 5892 7.880160 ATAACTGCACATTGTGGTATACATT 57.120 32.000 18.05 0.00 39.48 2.71
5465 5893 6.588719 AACTGCACATTGTGGTATACATTT 57.411 33.333 18.05 5.30 39.48 2.32
5466 5894 6.194796 ACTGCACATTGTGGTATACATTTC 57.805 37.500 18.05 0.00 39.48 2.17
5467 5895 5.163764 ACTGCACATTGTGGTATACATTTCG 60.164 40.000 18.05 0.00 39.48 3.46
5468 5896 4.697828 TGCACATTGTGGTATACATTTCGT 59.302 37.500 18.05 0.00 39.48 3.85
5469 5897 5.182190 TGCACATTGTGGTATACATTTCGTT 59.818 36.000 18.05 0.00 39.48 3.85
5470 5898 5.737290 GCACATTGTGGTATACATTTCGTTC 59.263 40.000 18.05 0.00 39.48 3.95
5475 5903 5.472148 TGTGGTATACATTTCGTTCGTCTT 58.528 37.500 5.01 0.00 33.42 3.01
5477 5905 6.089820 TGTGGTATACATTTCGTTCGTCTTTC 59.910 38.462 5.01 0.00 33.42 2.62
5492 5920 1.337071 TCTTTCGTCTGCTCGTTGTCT 59.663 47.619 0.00 0.00 0.00 3.41
5525 5953 4.154195 GTGAAATATCGTGAAAGGTGCAGT 59.846 41.667 0.00 0.00 0.00 4.40
5527 5955 1.438651 TATCGTGAAAGGTGCAGTGC 58.561 50.000 8.58 8.58 0.00 4.40
5553 5981 5.057149 CCCGATAATCCGAAAGATGTTCTT 58.943 41.667 0.00 0.00 38.59 2.52
5558 5986 5.824904 AATCCGAAAGATGTTCTTGGATG 57.175 39.130 8.90 0.00 37.93 3.51
5569 5997 6.660521 AGATGTTCTTGGATGTGCAGATTTTA 59.339 34.615 0.00 0.00 0.00 1.52
5570 5998 6.258230 TGTTCTTGGATGTGCAGATTTTAG 57.742 37.500 0.00 0.00 0.00 1.85
5571 5999 5.183713 TGTTCTTGGATGTGCAGATTTTAGG 59.816 40.000 0.00 0.00 0.00 2.69
5572 6000 3.696051 TCTTGGATGTGCAGATTTTAGGC 59.304 43.478 0.00 0.00 0.00 3.93
5573 6001 2.378038 TGGATGTGCAGATTTTAGGCC 58.622 47.619 0.00 0.00 0.00 5.19
5574 6002 2.025037 TGGATGTGCAGATTTTAGGCCT 60.025 45.455 11.78 11.78 0.00 5.19
5575 6003 2.360165 GGATGTGCAGATTTTAGGCCTG 59.640 50.000 17.99 0.00 0.00 4.85
5576 6004 2.584835 TGTGCAGATTTTAGGCCTGT 57.415 45.000 17.99 0.00 0.00 4.00
5577 6005 2.875296 TGTGCAGATTTTAGGCCTGTT 58.125 42.857 17.99 0.00 0.00 3.16
5578 6006 2.819608 TGTGCAGATTTTAGGCCTGTTC 59.180 45.455 17.99 6.74 0.00 3.18
5579 6007 2.083774 TGCAGATTTTAGGCCTGTTCG 58.916 47.619 17.99 4.85 0.00 3.95
5580 6008 1.401905 GCAGATTTTAGGCCTGTTCGG 59.598 52.381 17.99 8.53 0.00 4.30
5581 6009 2.939640 GCAGATTTTAGGCCTGTTCGGA 60.940 50.000 17.99 0.00 33.16 4.55
5582 6010 3.343617 CAGATTTTAGGCCTGTTCGGAA 58.656 45.455 17.99 0.00 33.16 4.30
5583 6011 3.127030 CAGATTTTAGGCCTGTTCGGAAC 59.873 47.826 17.99 13.86 33.16 3.62
5584 6012 2.943036 TTTTAGGCCTGTTCGGAACT 57.057 45.000 17.99 3.86 33.16 3.01
5585 6013 2.467566 TTTAGGCCTGTTCGGAACTC 57.532 50.000 17.99 10.22 33.16 3.01
5586 6014 0.611714 TTAGGCCTGTTCGGAACTCC 59.388 55.000 17.99 17.30 33.16 3.85
5587 6015 0.543410 TAGGCCTGTTCGGAACTCCA 60.543 55.000 17.99 1.20 35.14 3.86
5588 6016 1.671379 GGCCTGTTCGGAACTCCAC 60.671 63.158 20.53 8.40 35.14 4.02
5589 6017 1.070786 GCCTGTTCGGAACTCCACA 59.929 57.895 20.53 1.04 35.14 4.17
5590 6018 0.951040 GCCTGTTCGGAACTCCACAG 60.951 60.000 20.53 10.52 38.84 3.66
5591 6019 0.951040 CCTGTTCGGAACTCCACAGC 60.951 60.000 20.53 0.00 38.20 4.40
5592 6020 0.034059 CTGTTCGGAACTCCACAGCT 59.966 55.000 20.53 0.00 34.59 4.24
5593 6021 0.033504 TGTTCGGAACTCCACAGCTC 59.966 55.000 20.53 0.00 35.14 4.09
5594 6022 0.670854 GTTCGGAACTCCACAGCTCC 60.671 60.000 13.49 0.00 32.11 4.70
5595 6023 0.832135 TTCGGAACTCCACAGCTCCT 60.832 55.000 0.00 0.00 33.17 3.69
5596 6024 1.079543 CGGAACTCCACAGCTCCTG 60.080 63.158 0.00 0.00 33.17 3.86
5597 6025 1.298014 GGAACTCCACAGCTCCTGG 59.702 63.158 0.89 0.89 32.66 4.45
5598 6026 1.194781 GGAACTCCACAGCTCCTGGA 61.195 60.000 9.00 9.00 32.66 3.86
5608 6036 2.977178 CTCCTGGAGCTGCTTCGT 59.023 61.111 11.42 0.00 0.00 3.85
5609 6037 2.193532 CTCCTGGAGCTGCTTCGTA 58.806 57.895 11.42 0.00 0.00 3.43
5610 6038 0.179124 CTCCTGGAGCTGCTTCGTAC 60.179 60.000 11.42 0.00 0.00 3.67
5611 6039 0.612174 TCCTGGAGCTGCTTCGTACT 60.612 55.000 6.82 0.00 0.00 2.73
5612 6040 0.179124 CCTGGAGCTGCTTCGTACTC 60.179 60.000 6.82 0.00 0.00 2.59
5613 6041 4.816990 GGAGCTGCTTCGTACTCC 57.183 61.111 2.53 0.00 41.81 3.85
5614 6042 1.142097 GGAGCTGCTTCGTACTCCC 59.858 63.158 2.53 0.00 42.44 4.30
5615 6043 1.324005 GGAGCTGCTTCGTACTCCCT 61.324 60.000 2.53 0.00 42.44 4.20
5616 6044 0.101579 GAGCTGCTTCGTACTCCCTC 59.898 60.000 2.53 0.00 0.00 4.30
5617 6045 1.142097 GCTGCTTCGTACTCCCTCC 59.858 63.158 0.00 0.00 0.00 4.30
5618 6046 1.433879 CTGCTTCGTACTCCCTCCG 59.566 63.158 0.00 0.00 0.00 4.63
5619 6047 1.303888 TGCTTCGTACTCCCTCCGT 60.304 57.895 0.00 0.00 0.00 4.69
5620 6048 0.896940 TGCTTCGTACTCCCTCCGTT 60.897 55.000 0.00 0.00 0.00 4.44
5621 6049 0.179142 GCTTCGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
5622 6050 0.455005 CTTCGTACTCCCTCCGTTCC 59.545 60.000 0.00 0.00 0.00 3.62
5623 6051 0.251297 TTCGTACTCCCTCCGTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
5624 6052 0.251297 TCGTACTCCCTCCGTTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
5625 6053 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
5626 6054 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
5627 6055 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
5628 6056 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
5629 6057 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5630 6058 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5631 6059 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
5632 6060 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
5633 6061 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
5634 6062 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
5635 6063 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
5636 6064 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
5637 6065 5.334879 CCTCCGTTCCAAATTACTTGTCTTG 60.335 44.000 0.00 0.00 32.65 3.02
5638 6066 4.517453 TCCGTTCCAAATTACTTGTCTTGG 59.483 41.667 0.00 0.00 39.80 3.61
5639 6067 4.517453 CCGTTCCAAATTACTTGTCTTGGA 59.483 41.667 0.00 0.00 44.32 3.53
5640 6068 5.183140 CCGTTCCAAATTACTTGTCTTGGAT 59.817 40.000 3.38 0.00 45.10 3.41
5641 6069 6.294508 CCGTTCCAAATTACTTGTCTTGGATT 60.295 38.462 3.38 0.00 45.10 3.01
5642 6070 7.145323 CGTTCCAAATTACTTGTCTTGGATTT 58.855 34.615 3.38 0.00 45.10 2.17
5643 6071 7.114811 CGTTCCAAATTACTTGTCTTGGATTTG 59.885 37.037 3.38 0.00 45.10 2.32
5644 6072 7.595819 TCCAAATTACTTGTCTTGGATTTGT 57.404 32.000 0.00 0.00 41.83 2.83
5645 6073 7.657336 TCCAAATTACTTGTCTTGGATTTGTC 58.343 34.615 0.00 0.00 41.83 3.18
5646 6074 7.505585 TCCAAATTACTTGTCTTGGATTTGTCT 59.494 33.333 0.00 0.00 41.83 3.41
5647 6075 8.792633 CCAAATTACTTGTCTTGGATTTGTCTA 58.207 33.333 0.00 0.00 40.72 2.59
5648 6076 9.831737 CAAATTACTTGTCTTGGATTTGTCTAG 57.168 33.333 0.00 0.00 32.62 2.43
5649 6077 9.793259 AAATTACTTGTCTTGGATTTGTCTAGA 57.207 29.630 0.00 0.00 0.00 2.43
5650 6078 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
5652 6080 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
5653 6081 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
5654 6082 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
5655 6083 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
5656 6084 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
5657 6085 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
5658 6086 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
5659 6087 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
5660 6088 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
5676 6104 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
5677 6105 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
5678 6106 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
5679 6107 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
5682 6110 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
5686 6114 8.775527 TCTAGACTCATTTTAGTGCTAGATACG 58.224 37.037 0.00 0.00 34.69 3.06
5687 6115 7.336161 AGACTCATTTTAGTGCTAGATACGT 57.664 36.000 0.00 0.00 0.00 3.57
5688 6116 7.419204 AGACTCATTTTAGTGCTAGATACGTC 58.581 38.462 0.00 0.00 0.00 4.34
5689 6117 6.505272 ACTCATTTTAGTGCTAGATACGTCC 58.495 40.000 0.00 0.00 0.00 4.79
5690 6118 5.516996 TCATTTTAGTGCTAGATACGTCCG 58.483 41.667 0.00 0.00 0.00 4.79
5691 6119 4.970662 TTTTAGTGCTAGATACGTCCGT 57.029 40.909 0.00 0.00 0.00 4.69
5692 6120 6.260714 TCATTTTAGTGCTAGATACGTCCGTA 59.739 38.462 1.60 1.60 34.87 4.02
5693 6121 6.624352 TTTTAGTGCTAGATACGTCCGTAT 57.376 37.500 11.81 11.81 43.24 3.06
5706 6134 5.831702 ACGTCCGTATCTAGACTCATTTT 57.168 39.130 0.00 0.00 0.00 1.82
5707 6135 6.932356 ACGTCCGTATCTAGACTCATTTTA 57.068 37.500 0.00 0.00 0.00 1.52
5708 6136 6.957150 ACGTCCGTATCTAGACTCATTTTAG 58.043 40.000 0.00 0.00 0.00 1.85
5709 6137 6.541641 ACGTCCGTATCTAGACTCATTTTAGT 59.458 38.462 0.00 0.00 0.00 2.24
5710 6138 6.851837 CGTCCGTATCTAGACTCATTTTAGTG 59.148 42.308 0.00 0.00 0.00 2.74
5711 6139 6.637658 GTCCGTATCTAGACTCATTTTAGTGC 59.362 42.308 0.00 0.00 0.00 4.40
5712 6140 6.546403 TCCGTATCTAGACTCATTTTAGTGCT 59.454 38.462 0.00 0.00 0.00 4.40
5713 6141 7.718314 TCCGTATCTAGACTCATTTTAGTGCTA 59.282 37.037 0.00 0.00 0.00 3.49
5714 6142 8.018520 CCGTATCTAGACTCATTTTAGTGCTAG 58.981 40.741 0.00 0.00 33.34 3.42
5715 6143 8.775527 CGTATCTAGACTCATTTTAGTGCTAGA 58.224 37.037 0.00 0.00 38.76 2.43
5719 6147 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
5720 6148 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
5721 6149 8.312669 AGACTCATTTTAGTGCTAGATACCTT 57.687 34.615 0.00 0.00 0.00 3.50
5722 6150 8.417884 AGACTCATTTTAGTGCTAGATACCTTC 58.582 37.037 0.00 0.00 0.00 3.46
5723 6151 7.203910 ACTCATTTTAGTGCTAGATACCTTCG 58.796 38.462 0.00 0.00 0.00 3.79
5724 6152 7.108841 TCATTTTAGTGCTAGATACCTTCGT 57.891 36.000 0.00 0.00 0.00 3.85
5725 6153 8.229253 TCATTTTAGTGCTAGATACCTTCGTA 57.771 34.615 0.00 0.00 0.00 3.43
5726 6154 8.857098 TCATTTTAGTGCTAGATACCTTCGTAT 58.143 33.333 0.00 0.00 37.92 3.06
5742 6170 8.749026 ACCTTCGTATCTAGACAAATCTAAGA 57.251 34.615 0.00 0.00 36.98 2.10
5743 6171 8.623030 ACCTTCGTATCTAGACAAATCTAAGAC 58.377 37.037 0.00 0.00 36.98 3.01
5744 6172 8.622157 CCTTCGTATCTAGACAAATCTAAGACA 58.378 37.037 0.00 0.00 36.98 3.41
5747 6175 9.175312 TCGTATCTAGACAAATCTAAGACAAGT 57.825 33.333 0.00 0.00 36.98 3.16
5754 6182 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
5755 6183 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
5756 6184 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
5757 6185 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
5774 6202 3.999046 GGAACGGAAGGAGTAGTTTTCA 58.001 45.455 0.00 0.00 0.00 2.69
5775 6203 4.383173 GGAACGGAAGGAGTAGTTTTCAA 58.617 43.478 0.00 0.00 0.00 2.69
5776 6204 4.212847 GGAACGGAAGGAGTAGTTTTCAAC 59.787 45.833 0.00 0.00 0.00 3.18
5777 6205 4.684484 ACGGAAGGAGTAGTTTTCAACT 57.316 40.909 0.00 0.00 45.40 3.16
5778 6206 4.377897 ACGGAAGGAGTAGTTTTCAACTG 58.622 43.478 0.00 0.00 42.84 3.16
5779 6207 3.186613 CGGAAGGAGTAGTTTTCAACTGC 59.813 47.826 0.00 0.00 42.84 4.40
5780 6208 4.134563 GGAAGGAGTAGTTTTCAACTGCA 58.865 43.478 7.37 0.00 45.20 4.41
5781 6209 4.578928 GGAAGGAGTAGTTTTCAACTGCAA 59.421 41.667 7.37 0.00 45.20 4.08
5782 6210 5.500645 AAGGAGTAGTTTTCAACTGCAAC 57.499 39.130 7.37 0.54 45.20 4.17
5783 6211 4.781934 AGGAGTAGTTTTCAACTGCAACT 58.218 39.130 7.37 0.00 45.20 3.16
5784 6212 4.816925 AGGAGTAGTTTTCAACTGCAACTC 59.183 41.667 7.37 8.04 45.20 3.01
5785 6213 5.096954 GAGTAGTTTTCAACTGCAACTCC 57.903 43.478 7.37 0.00 45.20 3.85
5786 6214 4.523083 AGTAGTTTTCAACTGCAACTCCA 58.477 39.130 7.37 0.00 45.20 3.86
5787 6215 5.133221 AGTAGTTTTCAACTGCAACTCCAT 58.867 37.500 7.37 0.00 45.20 3.41
5788 6216 6.296026 AGTAGTTTTCAACTGCAACTCCATA 58.704 36.000 7.37 0.00 45.20 2.74
5789 6217 6.942576 AGTAGTTTTCAACTGCAACTCCATAT 59.057 34.615 7.37 0.00 45.20 1.78
5790 6218 8.100791 AGTAGTTTTCAACTGCAACTCCATATA 58.899 33.333 7.37 0.00 45.20 0.86
5791 6219 7.759489 AGTTTTCAACTGCAACTCCATATAA 57.241 32.000 0.00 0.00 41.01 0.98
5792 6220 7.593825 AGTTTTCAACTGCAACTCCATATAAC 58.406 34.615 0.00 0.00 41.01 1.89
5793 6221 7.448469 AGTTTTCAACTGCAACTCCATATAACT 59.552 33.333 0.00 0.00 41.01 2.24
5794 6222 6.985188 TTCAACTGCAACTCCATATAACTC 57.015 37.500 0.00 0.00 0.00 3.01
5795 6223 5.428253 TCAACTGCAACTCCATATAACTCC 58.572 41.667 0.00 0.00 0.00 3.85
5796 6224 4.060038 ACTGCAACTCCATATAACTCCG 57.940 45.455 0.00 0.00 0.00 4.63
5797 6225 3.181465 ACTGCAACTCCATATAACTCCGG 60.181 47.826 0.00 0.00 0.00 5.14
5798 6226 2.104111 TGCAACTCCATATAACTCCGGG 59.896 50.000 0.00 0.00 0.00 5.73
5799 6227 2.550208 GCAACTCCATATAACTCCGGGG 60.550 54.545 0.00 0.00 0.00 5.73
5800 6228 2.025636 ACTCCATATAACTCCGGGGG 57.974 55.000 6.13 0.00 0.00 5.40
5801 6229 1.222298 ACTCCATATAACTCCGGGGGT 59.778 52.381 6.13 0.00 0.00 4.95
5802 6230 1.623811 CTCCATATAACTCCGGGGGTG 59.376 57.143 0.00 0.00 0.00 4.61
5803 6231 0.690762 CCATATAACTCCGGGGGTGG 59.309 60.000 0.00 0.00 0.00 4.61
5804 6232 1.724545 CATATAACTCCGGGGGTGGA 58.275 55.000 0.00 0.00 36.37 4.02
5810 6238 3.246112 TCCGGGGGTGGAGTTGTG 61.246 66.667 0.00 0.00 33.05 3.33
5811 6239 4.344865 CCGGGGGTGGAGTTGTGG 62.345 72.222 0.00 0.00 0.00 4.17
5812 6240 3.246112 CGGGGGTGGAGTTGTGGA 61.246 66.667 0.00 0.00 0.00 4.02
5813 6241 2.757077 GGGGGTGGAGTTGTGGAG 59.243 66.667 0.00 0.00 0.00 3.86
5814 6242 2.154074 GGGGGTGGAGTTGTGGAGT 61.154 63.158 0.00 0.00 0.00 3.85
5815 6243 1.073199 GGGGTGGAGTTGTGGAGTG 59.927 63.158 0.00 0.00 0.00 3.51
5816 6244 1.073199 GGGTGGAGTTGTGGAGTGG 59.927 63.158 0.00 0.00 0.00 4.00
5817 6245 1.415672 GGGTGGAGTTGTGGAGTGGA 61.416 60.000 0.00 0.00 0.00 4.02
5818 6246 0.035458 GGTGGAGTTGTGGAGTGGAG 59.965 60.000 0.00 0.00 0.00 3.86
5819 6247 0.035458 GTGGAGTTGTGGAGTGGAGG 59.965 60.000 0.00 0.00 0.00 4.30
5820 6248 0.399949 TGGAGTTGTGGAGTGGAGGT 60.400 55.000 0.00 0.00 0.00 3.85
5821 6249 0.765510 GGAGTTGTGGAGTGGAGGTT 59.234 55.000 0.00 0.00 0.00 3.50
5822 6250 1.270893 GGAGTTGTGGAGTGGAGGTTC 60.271 57.143 0.00 0.00 0.00 3.62
5823 6251 1.694696 GAGTTGTGGAGTGGAGGTTCT 59.305 52.381 0.00 0.00 0.00 3.01
5824 6252 1.694696 AGTTGTGGAGTGGAGGTTCTC 59.305 52.381 0.00 0.00 0.00 2.87
5833 6261 1.079057 GGAGGTTCTCCGAACAGGC 60.079 63.158 8.76 0.00 41.08 4.85
5834 6262 1.079057 GAGGTTCTCCGAACAGGCC 60.079 63.158 0.00 0.00 40.77 5.19
5835 6263 1.536662 AGGTTCTCCGAACAGGCCT 60.537 57.895 0.00 0.00 40.77 5.19
5836 6264 1.128188 AGGTTCTCCGAACAGGCCTT 61.128 55.000 0.00 0.00 40.77 4.35
5837 6265 0.250770 GGTTCTCCGAACAGGCCTTT 60.251 55.000 0.00 0.20 40.77 3.11
5838 6266 1.157585 GTTCTCCGAACAGGCCTTTC 58.842 55.000 0.00 10.02 40.77 2.62
5842 6270 1.004918 CCGAACAGGCCTTTCTCGT 60.005 57.895 20.71 6.95 0.00 4.18
5852 6280 2.863740 GGCCTTTCTCGTTTTGTTTTGG 59.136 45.455 0.00 0.00 0.00 3.28
5853 6281 3.517602 GCCTTTCTCGTTTTGTTTTGGT 58.482 40.909 0.00 0.00 0.00 3.67
5854 6282 3.930229 GCCTTTCTCGTTTTGTTTTGGTT 59.070 39.130 0.00 0.00 0.00 3.67
5880 6308 1.335597 TGCCGCACGTATGTATAGAGC 60.336 52.381 0.00 0.00 0.00 4.09
5896 6324 2.673523 GCATCTGCTCCAGGTGGT 59.326 61.111 7.52 0.00 42.32 4.16
5933 6362 3.792401 TCCATGAGAATTGCGAACGTAT 58.208 40.909 0.00 0.00 0.00 3.06
5995 6430 8.839310 ATAGTCATCTCATAAAAAGGGATTCG 57.161 34.615 0.00 0.00 0.00 3.34
6002 6437 7.198390 TCTCATAAAAAGGGATTCGTAGTACG 58.802 38.462 16.65 16.65 44.19 3.67
6009 6444 5.023533 AGGGATTCGTAGTACGTACTGTA 57.976 43.478 33.23 15.57 43.14 2.74
6085 6587 4.378774 CAATGCACCTGAATTGGAAAACA 58.621 39.130 0.00 0.00 37.41 2.83
6089 6591 5.055812 TGCACCTGAATTGGAAAACATTTC 58.944 37.500 0.00 0.00 39.01 2.17
6092 6594 6.260714 GCACCTGAATTGGAAAACATTTCTTT 59.739 34.615 3.16 0.00 39.20 2.52
6093 6595 7.201723 GCACCTGAATTGGAAAACATTTCTTTT 60.202 33.333 3.16 0.00 39.20 2.27
6094 6596 8.676401 CACCTGAATTGGAAAACATTTCTTTTT 58.324 29.630 3.16 0.00 39.20 1.94
6123 6625 6.196079 AGTGTCAACTTTCTGAAACCTTTC 57.804 37.500 0.00 0.00 34.53 2.62
6130 6637 6.944234 ACTTTCTGAAACCTTTCTTACCAG 57.056 37.500 0.00 0.00 38.02 4.00
6141 6648 4.164221 CCTTTCTTACCAGAGATGGCCTAA 59.836 45.833 3.32 0.00 0.00 2.69
6143 6650 2.693591 TCTTACCAGAGATGGCCTAACG 59.306 50.000 3.32 0.00 0.00 3.18
6151 6658 5.462405 CAGAGATGGCCTAACGTATTACTC 58.538 45.833 3.32 0.00 0.00 2.59
6160 6667 7.138736 GGCCTAACGTATTACTCGTGTAATAA 58.861 38.462 24.19 12.74 46.74 1.40
6161 6668 7.324616 GGCCTAACGTATTACTCGTGTAATAAG 59.675 40.741 26.96 26.96 46.74 1.73
6186 6693 4.910195 AGTTTCACAGATGAATGGCTGTA 58.090 39.130 0.00 0.00 44.36 2.74
6202 6709 1.338337 CTGTAGTGGTATCCTCGGCAG 59.662 57.143 0.00 0.00 0.00 4.85
6206 6718 1.906574 AGTGGTATCCTCGGCAGAAAA 59.093 47.619 0.00 0.00 0.00 2.29
6229 6741 1.197721 AGAAGCAAAATCGCAAGTCCG 59.802 47.619 0.00 0.00 39.48 4.79
6232 6744 1.606668 AGCAAAATCGCAAGTCCGAAA 59.393 42.857 0.00 0.00 41.01 3.46
6242 6754 5.568482 TCGCAAGTCCGAAAAATATGAATG 58.432 37.500 0.00 0.00 33.77 2.67
6243 6755 4.734854 CGCAAGTCCGAAAAATATGAATGG 59.265 41.667 0.00 0.00 0.00 3.16
6248 6760 8.620416 CAAGTCCGAAAAATATGAATGGTATCA 58.380 33.333 0.00 0.00 0.00 2.15
6280 6792 2.764572 AGGGTCCAGAATACAACGGTAG 59.235 50.000 0.00 0.00 31.88 3.18
6288 6800 6.070995 TCCAGAATACAACGGTAGTCATTCTT 60.071 38.462 5.31 0.00 44.77 2.52
6291 6803 7.330946 CAGAATACAACGGTAGTCATTCTTTCA 59.669 37.037 5.31 0.00 44.77 2.69
6292 6804 6.963049 ATACAACGGTAGTCATTCTTTCAC 57.037 37.500 0.00 0.00 31.88 3.18
6293 6805 4.699637 ACAACGGTAGTCATTCTTTCACA 58.300 39.130 0.00 0.00 0.00 3.58
6303 6815 7.740519 AGTCATTCTTTCACAAAACTTTTCG 57.259 32.000 0.00 0.00 0.00 3.46
6307 6819 3.849145 TCTTTCACAAAACTTTTCGCACG 59.151 39.130 0.00 0.00 0.00 5.34
6314 6826 3.889196 AAACTTTTCGCACGAGCATTA 57.111 38.095 5.50 0.00 42.27 1.90
6378 6890 8.553459 TTTGACTCCTTCTGATATTTCAAGTC 57.447 34.615 7.57 7.57 36.17 3.01
6382 6894 7.694093 ACTCCTTCTGATATTTCAAGTCCTTT 58.306 34.615 0.00 0.00 0.00 3.11
6429 6941 2.352814 CCGAGACCCATAGGCTATTTCG 60.353 54.545 3.76 9.14 36.11 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
949 950 0.743345 GGGCACGGTGGTTGACTATC 60.743 60.000 10.60 0.00 0.00 2.08
1424 1744 1.364171 GCGGATCTAGATGGTGCGT 59.636 57.895 10.74 0.00 0.00 5.24
1595 1915 7.039993 ACAGAAAAATAAATGGTTAGCTTCGGT 60.040 33.333 0.00 0.00 0.00 4.69
1651 1971 5.375417 AATCGCACAATTGACTTTGATCA 57.625 34.783 13.59 0.00 0.00 2.92
1666 1986 3.991773 TCGCATATAACCCTAAATCGCAC 59.008 43.478 0.00 0.00 0.00 5.34
1745 2066 1.264288 CAAAACGAGAACTGGTCCAGC 59.736 52.381 19.40 3.48 34.37 4.85
1771 2092 5.065346 GCAAGGAAACTAGATTCAGTAAGCC 59.935 44.000 13.98 0.00 42.68 4.35
1772 2093 5.065346 GGCAAGGAAACTAGATTCAGTAAGC 59.935 44.000 13.98 9.65 42.68 3.09
1773 2094 6.410540 AGGCAAGGAAACTAGATTCAGTAAG 58.589 40.000 13.98 1.58 42.68 2.34
1774 2095 6.374417 AGGCAAGGAAACTAGATTCAGTAA 57.626 37.500 13.98 0.00 42.68 2.24
1783 2114 1.087501 GCGGAAGGCAAGGAAACTAG 58.912 55.000 0.00 0.00 42.68 2.57
1801 2132 4.866486 CCATCCAAACAAGCTTAATCTTGC 59.134 41.667 16.93 0.00 45.43 4.01
2010 2342 2.884639 ACCATCAACAGTGTACTTTGGC 59.115 45.455 0.00 0.00 0.00 4.52
2117 2450 9.736023 CCATAAAAGAAGGCATCTGTTTATTAC 57.264 33.333 0.00 0.00 36.89 1.89
2317 2650 3.006940 TGTTTAAGGCTAAGCATGGACG 58.993 45.455 0.00 0.00 0.00 4.79
2334 2667 4.679662 GCATTCAGCATTCTAGCATGTTT 58.320 39.130 4.26 0.00 44.79 2.83
2409 2742 4.540824 CTTGGTCTAAGCACAAAGAAAGC 58.459 43.478 0.00 0.00 29.61 3.51
2444 2818 7.997803 AGGGATAGAATTGGAAAGAAATCTCTG 59.002 37.037 0.00 0.00 30.03 3.35
2538 2913 6.589523 GCATGTAATCTATGAGATCAGGACAC 59.410 42.308 0.00 0.00 32.89 3.67
2662 3041 2.159517 GCAGTGCAGTTAATTCCTTCCG 60.160 50.000 11.09 0.00 0.00 4.30
2716 3096 2.374170 GGAAGTTTAGGGGTGGAGTGAA 59.626 50.000 0.00 0.00 0.00 3.18
2896 3277 1.144708 TGGCAGGAACAAGTGGATGAA 59.855 47.619 0.00 0.00 0.00 2.57
2897 3278 0.770499 TGGCAGGAACAAGTGGATGA 59.230 50.000 0.00 0.00 0.00 2.92
2948 3337 6.784031 ACAGAGGGAGTATCAAGTTTGAATT 58.216 36.000 0.00 0.00 41.13 2.17
3493 3907 5.299279 CAGAAAGTTATGTCAAGGGTTGTGT 59.701 40.000 0.00 0.00 0.00 3.72
3697 4122 4.040339 TCTGCCATGAAGTTCTGTACAGAA 59.960 41.667 30.07 30.07 44.47 3.02
3844 4270 8.729805 AAGTTTCCAACATAATTGCAGAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
3985 4411 3.387397 TGCATGCAGTCTGATCTTATCG 58.613 45.455 18.46 0.00 0.00 2.92
4008 4434 4.063689 CAATTAGCCAATTGTTTGTGCCA 58.936 39.130 9.17 0.00 44.01 4.92
4042 4468 9.429359 CGCTACAGAAATATAGATTTTCATCCT 57.571 33.333 0.00 0.00 35.33 3.24
4095 4521 7.581213 TTCCAGCTGTTCAATAAGAAAAGAA 57.419 32.000 13.81 0.60 43.17 2.52
4096 4522 7.425606 GTTTCCAGCTGTTCAATAAGAAAAGA 58.574 34.615 13.81 0.00 43.17 2.52
4097 4523 6.642540 GGTTTCCAGCTGTTCAATAAGAAAAG 59.357 38.462 13.81 0.00 43.33 2.27
4139 4565 4.646945 TGGCCTTCAACAACTTCATTACAA 59.353 37.500 3.32 0.00 0.00 2.41
4287 4713 3.181471 CCTTCAGATTCAGCGAGTGGTAT 60.181 47.826 0.00 0.00 0.00 2.73
4296 4722 5.182760 ACTTCATTGAACCTTCAGATTCAGC 59.817 40.000 0.00 0.00 38.61 4.26
4334 4760 6.870769 AGCATTTTCCATCACTCTAAATTGG 58.129 36.000 0.00 0.00 0.00 3.16
4610 5036 2.029518 TGCCTCACACAGCAGTCG 59.970 61.111 0.00 0.00 33.08 4.18
4619 5045 4.248842 CCACCACCGTGCCTCACA 62.249 66.667 0.00 0.00 38.79 3.58
4709 5135 3.133365 AAACTTGCACCGCCTCCCT 62.133 57.895 0.00 0.00 0.00 4.20
4775 5201 3.434319 CGTCTGCCACCACCATGC 61.434 66.667 0.00 0.00 0.00 4.06
4826 5252 0.251341 AGCAGAAATCCACACCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
4871 5297 1.491670 CATCGGCAGTATCACCTTCG 58.508 55.000 0.00 0.00 0.00 3.79
4929 5355 2.202810 CCTCTCGGCCTTCTTCGC 60.203 66.667 0.00 0.00 0.00 4.70
4969 5395 1.694133 GGAGGGACCAGCTGGATCAG 61.694 65.000 39.19 12.80 38.94 2.90
5016 5442 0.396435 TCGGGCATATCGGCAGAAAT 59.604 50.000 0.00 0.00 41.34 2.17
5081 5507 1.001158 GCTATAGCGGTCTCAGGTGAC 60.001 57.143 9.40 0.00 36.31 3.67
5117 5543 2.024414 GGTGGTTGTTGAAGCTGAAGT 58.976 47.619 0.00 0.00 0.00 3.01
5235 5661 4.990526 ACAACCTTCATCTTCATGGAACT 58.009 39.130 0.00 0.00 0.00 3.01
5237 5663 5.005740 CAGACAACCTTCATCTTCATGGAA 58.994 41.667 0.00 0.00 0.00 3.53
5281 5707 5.099042 ACACTTTGTAACAGACTCAACCT 57.901 39.130 0.00 0.00 0.00 3.50
5335 5761 3.187700 GACTCACGTTCATATGGACACC 58.812 50.000 14.59 0.00 0.00 4.16
5350 5776 4.585955 TTAGTCAACTCACAGGACTCAC 57.414 45.455 0.00 0.00 41.74 3.51
5440 5868 7.880160 AATGTATACCACAATGTGCAGTTAT 57.120 32.000 8.05 4.44 41.55 1.89
5441 5869 7.413548 CGAAATGTATACCACAATGTGCAGTTA 60.414 37.037 8.05 0.00 41.55 2.24
5442 5870 6.588719 AAATGTATACCACAATGTGCAGTT 57.411 33.333 8.05 3.01 41.55 3.16
5443 5871 5.163764 CGAAATGTATACCACAATGTGCAGT 60.164 40.000 8.05 4.20 41.55 4.40
5444 5872 5.163764 ACGAAATGTATACCACAATGTGCAG 60.164 40.000 8.05 0.00 41.55 4.41
5445 5873 4.697828 ACGAAATGTATACCACAATGTGCA 59.302 37.500 8.05 0.23 41.55 4.57
5446 5874 5.229921 ACGAAATGTATACCACAATGTGC 57.770 39.130 8.05 0.00 41.55 4.57
5447 5875 5.957220 CGAACGAAATGTATACCACAATGTG 59.043 40.000 6.37 6.37 41.55 3.21
5448 5876 5.640357 ACGAACGAAATGTATACCACAATGT 59.360 36.000 0.00 0.00 41.55 2.71
5449 5877 6.035650 AGACGAACGAAATGTATACCACAATG 59.964 38.462 0.00 0.00 41.55 2.82
5450 5878 6.103997 AGACGAACGAAATGTATACCACAAT 58.896 36.000 0.00 0.00 41.55 2.71
5451 5879 5.472148 AGACGAACGAAATGTATACCACAA 58.528 37.500 0.00 0.00 41.55 3.33
5452 5880 5.063180 AGACGAACGAAATGTATACCACA 57.937 39.130 0.00 0.00 42.69 4.17
5453 5881 6.399204 AAAGACGAACGAAATGTATACCAC 57.601 37.500 0.00 0.00 0.00 4.16
5454 5882 5.286797 CGAAAGACGAACGAAATGTATACCA 59.713 40.000 0.00 0.00 45.77 3.25
5455 5883 5.287035 ACGAAAGACGAACGAAATGTATACC 59.713 40.000 0.00 0.00 45.77 2.73
5456 5884 6.250104 AGACGAAAGACGAACGAAATGTATAC 59.750 38.462 0.14 0.00 45.77 1.47
5457 5885 6.249893 CAGACGAAAGACGAACGAAATGTATA 59.750 38.462 0.14 0.00 45.77 1.47
5458 5886 5.060569 CAGACGAAAGACGAACGAAATGTAT 59.939 40.000 0.14 0.00 45.77 2.29
5459 5887 4.380678 CAGACGAAAGACGAACGAAATGTA 59.619 41.667 0.14 0.00 45.77 2.29
5460 5888 3.181774 CAGACGAAAGACGAACGAAATGT 59.818 43.478 0.14 0.00 45.77 2.71
5461 5889 3.711425 CAGACGAAAGACGAACGAAATG 58.289 45.455 0.14 0.00 45.77 2.32
5462 5890 2.155155 GCAGACGAAAGACGAACGAAAT 59.845 45.455 0.14 0.00 45.77 2.17
5463 5891 1.519758 GCAGACGAAAGACGAACGAAA 59.480 47.619 0.14 0.00 45.77 3.46
5464 5892 1.126079 GCAGACGAAAGACGAACGAA 58.874 50.000 0.14 0.00 45.77 3.85
5465 5893 0.309922 AGCAGACGAAAGACGAACGA 59.690 50.000 0.14 0.00 45.77 3.85
5466 5894 0.703466 GAGCAGACGAAAGACGAACG 59.297 55.000 0.00 0.00 45.77 3.95
5467 5895 0.703466 CGAGCAGACGAAAGACGAAC 59.297 55.000 0.00 0.00 45.77 3.95
5468 5896 0.309922 ACGAGCAGACGAAAGACGAA 59.690 50.000 5.12 0.00 45.77 3.85
5469 5897 0.309922 AACGAGCAGACGAAAGACGA 59.690 50.000 5.12 0.00 45.77 4.20
5475 5903 2.218953 AAAGACAACGAGCAGACGAA 57.781 45.000 5.12 0.00 37.03 3.85
5507 5935 2.009774 GCACTGCACCTTTCACGATAT 58.990 47.619 0.00 0.00 0.00 1.63
5508 5936 1.438651 GCACTGCACCTTTCACGATA 58.561 50.000 0.00 0.00 0.00 2.92
5525 5953 1.070134 CTTTCGGATTATCGGGAGGCA 59.930 52.381 0.04 0.00 0.00 4.75
5527 5955 3.006967 ACATCTTTCGGATTATCGGGAGG 59.993 47.826 0.04 0.00 31.27 4.30
5534 5962 7.012704 CACATCCAAGAACATCTTTCGGATTAT 59.987 37.037 8.48 0.89 33.78 1.28
5553 5981 2.025037 AGGCCTAAAATCTGCACATCCA 60.025 45.455 1.29 0.00 0.00 3.41
5558 5986 2.159517 CGAACAGGCCTAAAATCTGCAC 60.160 50.000 3.98 0.00 32.19 4.57
5569 5997 1.841556 TGGAGTTCCGAACAGGCCT 60.842 57.895 13.69 0.00 40.77 5.19
5570 5998 1.671379 GTGGAGTTCCGAACAGGCC 60.671 63.158 13.69 11.35 40.77 5.19
5571 5999 0.951040 CTGTGGAGTTCCGAACAGGC 60.951 60.000 13.69 2.68 36.77 4.85
5572 6000 0.951040 GCTGTGGAGTTCCGAACAGG 60.951 60.000 13.69 3.69 39.26 4.00
5573 6001 0.034059 AGCTGTGGAGTTCCGAACAG 59.966 55.000 13.69 12.12 40.83 3.16
5574 6002 0.033504 GAGCTGTGGAGTTCCGAACA 59.966 55.000 13.69 0.00 39.43 3.18
5575 6003 0.670854 GGAGCTGTGGAGTTCCGAAC 60.671 60.000 2.81 2.81 39.55 3.95
5576 6004 1.671742 GGAGCTGTGGAGTTCCGAA 59.328 57.895 0.00 0.00 39.55 4.30
5577 6005 3.377656 GGAGCTGTGGAGTTCCGA 58.622 61.111 0.00 0.00 39.55 4.55
5580 6008 2.366469 TCCAGGAGCTGTGGAGTTC 58.634 57.895 9.92 0.00 39.28 3.01
5581 6009 4.648007 TCCAGGAGCTGTGGAGTT 57.352 55.556 9.92 0.00 39.28 3.01
5591 6019 0.179124 GTACGAAGCAGCTCCAGGAG 60.179 60.000 12.81 12.81 0.00 3.69
5592 6020 0.612174 AGTACGAAGCAGCTCCAGGA 60.612 55.000 0.00 0.00 0.00 3.86
5593 6021 0.179124 GAGTACGAAGCAGCTCCAGG 60.179 60.000 0.00 0.00 0.00 4.45
5594 6022 0.179124 GGAGTACGAAGCAGCTCCAG 60.179 60.000 0.00 0.00 45.00 3.86
5595 6023 1.605058 GGGAGTACGAAGCAGCTCCA 61.605 60.000 10.98 0.00 46.84 3.86
5596 6024 1.142097 GGGAGTACGAAGCAGCTCC 59.858 63.158 0.00 0.00 44.93 4.70
5597 6025 0.101579 GAGGGAGTACGAAGCAGCTC 59.898 60.000 0.00 0.00 0.00 4.09
5598 6026 1.324005 GGAGGGAGTACGAAGCAGCT 61.324 60.000 0.00 0.00 0.00 4.24
5599 6027 1.142097 GGAGGGAGTACGAAGCAGC 59.858 63.158 0.00 0.00 0.00 5.25
5600 6028 1.313812 ACGGAGGGAGTACGAAGCAG 61.314 60.000 0.00 0.00 0.00 4.24
5601 6029 0.896940 AACGGAGGGAGTACGAAGCA 60.897 55.000 0.00 0.00 0.00 3.91
5602 6030 0.179142 GAACGGAGGGAGTACGAAGC 60.179 60.000 0.00 0.00 0.00 3.86
5603 6031 0.455005 GGAACGGAGGGAGTACGAAG 59.545 60.000 0.00 0.00 0.00 3.79
5604 6032 0.251297 TGGAACGGAGGGAGTACGAA 60.251 55.000 0.00 0.00 0.00 3.85
5605 6033 0.251297 TTGGAACGGAGGGAGTACGA 60.251 55.000 0.00 0.00 0.00 3.43
5606 6034 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
5607 6035 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
5608 6036 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
5609 6037 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
5610 6038 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
5611 6039 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
5612 6040 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
5613 6041 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
5614 6042 5.334879 CCAAGACAAGTAATTTGGAACGGAG 60.335 44.000 0.00 0.00 42.05 4.63
5615 6043 4.517453 CCAAGACAAGTAATTTGGAACGGA 59.483 41.667 0.00 0.00 42.05 4.69
5616 6044 4.517453 TCCAAGACAAGTAATTTGGAACGG 59.483 41.667 2.52 0.00 44.38 4.44
5617 6045 5.682943 TCCAAGACAAGTAATTTGGAACG 57.317 39.130 2.52 0.00 44.38 3.95
5621 6049 7.661040 AGACAAATCCAAGACAAGTAATTTGG 58.339 34.615 9.60 0.00 41.25 3.28
5622 6050 9.831737 CTAGACAAATCCAAGACAAGTAATTTG 57.168 33.333 0.00 0.00 42.68 2.32
5623 6051 9.793259 TCTAGACAAATCCAAGACAAGTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
5624 6052 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
5626 6054 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
5627 6055 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
5628 6056 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
5629 6057 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
5630 6058 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
5631 6059 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
5632 6060 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
5633 6061 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
5634 6062 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
5635 6063 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
5636 6064 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
5650 6078 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
5651 6079 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
5652 6080 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
5653 6081 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
5656 6084 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
5660 6088 8.775527 CGTATCTAGCACTAAAATGAGTCTAGA 58.224 37.037 11.59 11.59 38.76 2.43
5661 6089 8.561212 ACGTATCTAGCACTAAAATGAGTCTAG 58.439 37.037 0.00 0.00 33.29 2.43
5662 6090 8.447924 ACGTATCTAGCACTAAAATGAGTCTA 57.552 34.615 0.00 0.00 0.00 2.59
5663 6091 7.336161 ACGTATCTAGCACTAAAATGAGTCT 57.664 36.000 0.00 0.00 0.00 3.24
5664 6092 6.637658 GGACGTATCTAGCACTAAAATGAGTC 59.362 42.308 0.00 0.00 0.00 3.36
5665 6093 6.505272 GGACGTATCTAGCACTAAAATGAGT 58.495 40.000 0.00 0.00 0.00 3.41
5666 6094 5.625721 CGGACGTATCTAGCACTAAAATGAG 59.374 44.000 0.00 0.00 0.00 2.90
5667 6095 5.066893 ACGGACGTATCTAGCACTAAAATGA 59.933 40.000 0.00 0.00 0.00 2.57
5668 6096 5.279384 ACGGACGTATCTAGCACTAAAATG 58.721 41.667 0.00 0.00 0.00 2.32
5669 6097 5.511234 ACGGACGTATCTAGCACTAAAAT 57.489 39.130 0.00 0.00 0.00 1.82
5670 6098 4.970662 ACGGACGTATCTAGCACTAAAA 57.029 40.909 0.00 0.00 0.00 1.52
5682 6110 7.507733 AAAATGAGTCTAGATACGGACGTAT 57.492 36.000 16.33 16.33 43.24 3.06
5683 6111 6.932356 AAAATGAGTCTAGATACGGACGTA 57.068 37.500 7.05 7.05 37.52 3.57
5684 6112 5.831702 AAAATGAGTCTAGATACGGACGT 57.168 39.130 1.98 1.98 37.52 4.34
5685 6113 6.851837 CACTAAAATGAGTCTAGATACGGACG 59.148 42.308 0.00 0.00 37.52 4.79
5686 6114 6.637658 GCACTAAAATGAGTCTAGATACGGAC 59.362 42.308 0.00 0.00 0.00 4.79
5687 6115 6.546403 AGCACTAAAATGAGTCTAGATACGGA 59.454 38.462 0.00 0.00 0.00 4.69
5688 6116 6.740110 AGCACTAAAATGAGTCTAGATACGG 58.260 40.000 0.00 0.00 0.00 4.02
5689 6117 8.775527 TCTAGCACTAAAATGAGTCTAGATACG 58.224 37.037 0.00 0.00 34.65 3.06
5693 6121 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
5694 6122 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
5695 6123 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
5696 6124 7.906199 AGGTATCTAGCACTAAAATGAGTCT 57.094 36.000 0.00 0.00 0.00 3.24
5697 6125 7.380065 CGAAGGTATCTAGCACTAAAATGAGTC 59.620 40.741 0.00 0.00 0.00 3.36
5698 6126 7.147880 ACGAAGGTATCTAGCACTAAAATGAGT 60.148 37.037 0.00 0.00 0.00 3.41
5699 6127 7.203910 ACGAAGGTATCTAGCACTAAAATGAG 58.796 38.462 0.00 0.00 0.00 2.90
5700 6128 7.108841 ACGAAGGTATCTAGCACTAAAATGA 57.891 36.000 0.00 0.00 0.00 2.57
5716 6144 9.842775 TCTTAGATTTGTCTAGATACGAAGGTA 57.157 33.333 0.00 0.00 0.00 3.08
5717 6145 8.623030 GTCTTAGATTTGTCTAGATACGAAGGT 58.377 37.037 0.00 0.00 0.00 3.50
5718 6146 8.622157 TGTCTTAGATTTGTCTAGATACGAAGG 58.378 37.037 0.00 0.00 0.00 3.46
5721 6149 9.175312 ACTTGTCTTAGATTTGTCTAGATACGA 57.825 33.333 0.00 0.00 0.00 3.43
5728 6156 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
5729 6157 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
5730 6158 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
5731 6159 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
5732 6160 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
5733 6161 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
5734 6162 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
5735 6163 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
5736 6164 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
5737 6165 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
5738 6166 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
5739 6167 4.261578 TCCGTTCCGAATTACTTGTCTT 57.738 40.909 0.00 0.00 0.00 3.01
5740 6168 3.947910 TCCGTTCCGAATTACTTGTCT 57.052 42.857 0.00 0.00 0.00 3.41
5741 6169 3.370061 CCTTCCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
5742 6170 3.007182 TCCTTCCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
5743 6171 3.592059 TCCTTCCGTTCCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
5744 6172 3.260128 ACTCCTTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
5745 6173 2.830321 ACTCCTTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
5746 6174 3.242549 ACTCCTTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
5747 6175 4.019174 ACTACTCCTTCCGTTCCGAATTA 58.981 43.478 0.00 0.00 0.00 1.40
5748 6176 2.830321 ACTACTCCTTCCGTTCCGAATT 59.170 45.455 0.00 0.00 0.00 2.17
5749 6177 2.454538 ACTACTCCTTCCGTTCCGAAT 58.545 47.619 0.00 0.00 0.00 3.34
5750 6178 1.915141 ACTACTCCTTCCGTTCCGAA 58.085 50.000 0.00 0.00 0.00 4.30
5751 6179 1.915141 AACTACTCCTTCCGTTCCGA 58.085 50.000 0.00 0.00 0.00 4.55
5752 6180 2.738013 AAACTACTCCTTCCGTTCCG 57.262 50.000 0.00 0.00 0.00 4.30
5753 6181 3.999046 TGAAAACTACTCCTTCCGTTCC 58.001 45.455 0.00 0.00 0.00 3.62
5754 6182 5.340010 GTTGAAAACTACTCCTTCCGTTC 57.660 43.478 0.00 0.00 45.32 3.95
5769 6197 7.094377 GGAGTTATATGGAGTTGCAGTTGAAAA 60.094 37.037 0.00 0.00 0.00 2.29
5770 6198 6.374333 GGAGTTATATGGAGTTGCAGTTGAAA 59.626 38.462 0.00 0.00 0.00 2.69
5771 6199 5.880332 GGAGTTATATGGAGTTGCAGTTGAA 59.120 40.000 0.00 0.00 0.00 2.69
5772 6200 5.428253 GGAGTTATATGGAGTTGCAGTTGA 58.572 41.667 0.00 0.00 0.00 3.18
5773 6201 4.271049 CGGAGTTATATGGAGTTGCAGTTG 59.729 45.833 0.00 0.00 0.00 3.16
5774 6202 4.442706 CGGAGTTATATGGAGTTGCAGTT 58.557 43.478 0.00 0.00 0.00 3.16
5775 6203 3.181465 CCGGAGTTATATGGAGTTGCAGT 60.181 47.826 0.00 0.00 0.00 4.40
5776 6204 3.393800 CCGGAGTTATATGGAGTTGCAG 58.606 50.000 0.00 0.00 0.00 4.41
5777 6205 2.104111 CCCGGAGTTATATGGAGTTGCA 59.896 50.000 0.73 0.00 0.00 4.08
5778 6206 2.550208 CCCCGGAGTTATATGGAGTTGC 60.550 54.545 0.73 0.00 0.00 4.17
5779 6207 2.038557 CCCCCGGAGTTATATGGAGTTG 59.961 54.545 0.73 0.00 0.00 3.16
5780 6208 2.335933 CCCCCGGAGTTATATGGAGTT 58.664 52.381 0.73 0.00 0.00 3.01
5781 6209 1.222298 ACCCCCGGAGTTATATGGAGT 59.778 52.381 0.73 0.00 0.00 3.85
5782 6210 1.623811 CACCCCCGGAGTTATATGGAG 59.376 57.143 0.73 0.00 0.00 3.86
5783 6211 1.724545 CACCCCCGGAGTTATATGGA 58.275 55.000 0.73 0.00 0.00 3.41
5784 6212 0.690762 CCACCCCCGGAGTTATATGG 59.309 60.000 0.73 0.00 0.00 2.74
5785 6213 1.623811 CTCCACCCCCGGAGTTATATG 59.376 57.143 0.73 0.00 46.48 1.78
5786 6214 2.025636 CTCCACCCCCGGAGTTATAT 57.974 55.000 0.73 0.00 46.48 0.86
5787 6215 3.545003 CTCCACCCCCGGAGTTATA 57.455 57.895 0.73 0.00 46.48 0.98
5788 6216 4.394102 CTCCACCCCCGGAGTTAT 57.606 61.111 0.73 0.00 46.48 1.89
5793 6221 3.246112 CACAACTCCACCCCCGGA 61.246 66.667 0.73 0.00 0.00 5.14
5794 6222 4.344865 CCACAACTCCACCCCCGG 62.345 72.222 0.00 0.00 0.00 5.73
5795 6223 3.246112 TCCACAACTCCACCCCCG 61.246 66.667 0.00 0.00 0.00 5.73
5796 6224 2.154074 ACTCCACAACTCCACCCCC 61.154 63.158 0.00 0.00 0.00 5.40
5797 6225 1.073199 CACTCCACAACTCCACCCC 59.927 63.158 0.00 0.00 0.00 4.95
5798 6226 1.073199 CCACTCCACAACTCCACCC 59.927 63.158 0.00 0.00 0.00 4.61
5799 6227 0.035458 CTCCACTCCACAACTCCACC 59.965 60.000 0.00 0.00 0.00 4.61
5800 6228 0.035458 CCTCCACTCCACAACTCCAC 59.965 60.000 0.00 0.00 0.00 4.02
5801 6229 0.399949 ACCTCCACTCCACAACTCCA 60.400 55.000 0.00 0.00 0.00 3.86
5802 6230 0.765510 AACCTCCACTCCACAACTCC 59.234 55.000 0.00 0.00 0.00 3.85
5803 6231 1.694696 AGAACCTCCACTCCACAACTC 59.305 52.381 0.00 0.00 0.00 3.01
5804 6232 1.694696 GAGAACCTCCACTCCACAACT 59.305 52.381 0.00 0.00 0.00 3.16
5805 6233 2.171341 GAGAACCTCCACTCCACAAC 57.829 55.000 0.00 0.00 0.00 3.32
5815 6243 1.079057 GCCTGTTCGGAGAACCTCC 60.079 63.158 10.00 2.97 46.44 4.30
5816 6244 1.079057 GGCCTGTTCGGAGAACCTC 60.079 63.158 10.00 0.00 45.90 3.85
5817 6245 1.128188 AAGGCCTGTTCGGAGAACCT 61.128 55.000 5.69 0.00 45.90 3.50
5818 6246 0.250770 AAAGGCCTGTTCGGAGAACC 60.251 55.000 5.69 0.00 45.90 3.62
5819 6247 1.157585 GAAAGGCCTGTTCGGAGAAC 58.842 55.000 5.69 6.01 45.90 3.01
5820 6248 1.002087 GAGAAAGGCCTGTTCGGAGAA 59.998 52.381 5.69 0.00 45.90 2.87
5821 6249 0.608640 GAGAAAGGCCTGTTCGGAGA 59.391 55.000 5.69 0.00 33.16 3.71
5822 6250 0.737715 CGAGAAAGGCCTGTTCGGAG 60.738 60.000 20.28 12.48 33.16 4.63
5823 6251 1.292223 CGAGAAAGGCCTGTTCGGA 59.708 57.895 20.28 0.00 33.16 4.55
5824 6252 0.602905 AACGAGAAAGGCCTGTTCGG 60.603 55.000 27.26 20.29 35.72 4.30
5825 6253 1.226746 AAACGAGAAAGGCCTGTTCG 58.773 50.000 24.16 24.16 37.31 3.95
5826 6254 2.357952 ACAAAACGAGAAAGGCCTGTTC 59.642 45.455 5.69 12.65 0.00 3.18
5827 6255 2.375146 ACAAAACGAGAAAGGCCTGTT 58.625 42.857 5.69 1.98 0.00 3.16
5828 6256 2.052782 ACAAAACGAGAAAGGCCTGT 57.947 45.000 5.69 0.00 0.00 4.00
5829 6257 3.436700 AAACAAAACGAGAAAGGCCTG 57.563 42.857 5.69 0.00 0.00 4.85
5830 6258 3.430236 CCAAAACAAAACGAGAAAGGCCT 60.430 43.478 0.00 0.00 0.00 5.19
5831 6259 2.863740 CCAAAACAAAACGAGAAAGGCC 59.136 45.455 0.00 0.00 0.00 5.19
5832 6260 3.517602 ACCAAAACAAAACGAGAAAGGC 58.482 40.909 0.00 0.00 0.00 4.35
5833 6261 7.764695 AATAACCAAAACAAAACGAGAAAGG 57.235 32.000 0.00 0.00 0.00 3.11
5836 6264 8.756864 GCAATAATAACCAAAACAAAACGAGAA 58.243 29.630 0.00 0.00 0.00 2.87
5837 6265 7.382759 GGCAATAATAACCAAAACAAAACGAGA 59.617 33.333 0.00 0.00 0.00 4.04
5838 6266 7.506474 GGCAATAATAACCAAAACAAAACGAG 58.494 34.615 0.00 0.00 0.00 4.18
5842 6270 5.758296 TGCGGCAATAATAACCAAAACAAAA 59.242 32.000 0.00 0.00 0.00 2.44
5852 6280 4.461992 ACATACGTGCGGCAATAATAAC 57.538 40.909 3.23 0.00 0.00 1.89
5853 6281 7.314393 TCTATACATACGTGCGGCAATAATAA 58.686 34.615 3.23 0.00 0.00 1.40
5854 6282 6.854778 TCTATACATACGTGCGGCAATAATA 58.145 36.000 3.23 0.00 0.00 0.98
5880 6308 1.489481 TCTACCACCTGGAGCAGATG 58.511 55.000 0.00 0.00 38.94 2.90
5988 6423 5.084385 GTACAGTACGTACTACGAATCCC 57.916 47.826 26.95 6.71 46.05 3.85
6002 6437 2.538535 GCTCGCTCGGTAAGTACAGTAC 60.539 54.545 2.05 2.05 0.00 2.73
6009 6444 2.484203 GTCGCTCGCTCGGTAAGT 59.516 61.111 0.00 0.00 0.00 2.24
6012 6447 3.200593 GAGGTCGCTCGCTCGGTA 61.201 66.667 0.00 0.00 0.00 4.02
6099 6601 6.434340 AGAAAGGTTTCAGAAAGTTGACACTT 59.566 34.615 5.30 0.00 41.14 3.16
6100 6602 5.946377 AGAAAGGTTTCAGAAAGTTGACACT 59.054 36.000 5.30 0.00 39.61 3.55
6103 6605 7.148137 TGGTAAGAAAGGTTTCAGAAAGTTGAC 60.148 37.037 5.30 0.00 39.61 3.18
6104 6606 6.887545 TGGTAAGAAAGGTTTCAGAAAGTTGA 59.112 34.615 5.30 0.00 39.61 3.18
6105 6607 7.067008 TCTGGTAAGAAAGGTTTCAGAAAGTTG 59.933 37.037 5.30 0.00 39.61 3.16
6123 6625 2.431057 ACGTTAGGCCATCTCTGGTAAG 59.569 50.000 5.01 0.00 45.10 2.34
6130 6637 4.023365 ACGAGTAATACGTTAGGCCATCTC 60.023 45.833 5.01 0.00 41.18 2.75
6151 6658 9.135843 TCATCTGTGAAACTAACTTATTACACG 57.864 33.333 0.00 0.00 38.04 4.49
6160 6667 5.413833 CAGCCATTCATCTGTGAAACTAACT 59.586 40.000 0.00 0.00 46.67 2.24
6161 6668 5.182001 ACAGCCATTCATCTGTGAAACTAAC 59.818 40.000 0.00 0.00 46.67 2.34
6162 6669 5.316167 ACAGCCATTCATCTGTGAAACTAA 58.684 37.500 0.00 0.00 46.67 2.24
6163 6670 4.910195 ACAGCCATTCATCTGTGAAACTA 58.090 39.130 0.00 0.00 46.67 2.24
6181 6688 0.032267 GCCGAGGATACCACTACAGC 59.968 60.000 0.00 0.00 37.17 4.40
6186 6693 1.568504 TTTCTGCCGAGGATACCACT 58.431 50.000 0.00 0.00 37.17 4.00
6206 6718 4.051237 GGACTTGCGATTTTGCTTCTTTT 58.949 39.130 0.00 0.00 35.36 2.27
6254 6766 5.005094 CCGTTGTATTCTGGACCCTAAAAA 58.995 41.667 0.00 0.00 0.00 1.94
6259 6771 1.652947 ACCGTTGTATTCTGGACCCT 58.347 50.000 0.00 0.00 0.00 4.34
6260 6772 2.498885 ACTACCGTTGTATTCTGGACCC 59.501 50.000 0.00 0.00 0.00 4.46
6261 6773 3.194116 TGACTACCGTTGTATTCTGGACC 59.806 47.826 0.00 0.00 30.26 4.46
6272 6784 5.666969 TTGTGAAAGAATGACTACCGTTG 57.333 39.130 0.00 0.00 0.00 4.10
6273 6785 6.317893 AGTTTTGTGAAAGAATGACTACCGTT 59.682 34.615 0.00 0.00 0.00 4.44
6274 6786 5.820947 AGTTTTGTGAAAGAATGACTACCGT 59.179 36.000 0.00 0.00 0.00 4.83
6275 6787 6.300354 AGTTTTGTGAAAGAATGACTACCG 57.700 37.500 0.00 0.00 0.00 4.02
6280 6792 6.034470 TGCGAAAAGTTTTGTGAAAGAATGAC 59.966 34.615 5.36 0.00 0.00 3.06
6288 6800 3.421741 CTCGTGCGAAAAGTTTTGTGAA 58.578 40.909 5.36 0.00 0.00 3.18
6291 6803 1.131504 TGCTCGTGCGAAAAGTTTTGT 59.868 42.857 5.36 0.00 43.34 2.83
6292 6804 1.821336 TGCTCGTGCGAAAAGTTTTG 58.179 45.000 5.36 0.00 43.34 2.44
6293 6805 2.774439 ATGCTCGTGCGAAAAGTTTT 57.226 40.000 0.00 0.00 43.34 2.43
6303 6815 3.250744 TGACTTAGTGTAATGCTCGTGC 58.749 45.455 1.71 1.71 40.20 5.34
6382 6894 4.461081 CCATTACACTCGGATTGGGAAAAA 59.539 41.667 0.29 0.00 0.00 1.94
6407 6919 2.400467 AATAGCCTATGGGTCTCGGT 57.600 50.000 0.00 0.00 34.28 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.