Multiple sequence alignment - TraesCS7A01G233600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G233600 chr7A 100.000 7892 0 0 1 7892 205458137 205466028 0.000000e+00 14574.0
1 TraesCS7A01G233600 chr7B 93.722 5225 241 34 1799 7002 159510700 159515858 0.000000e+00 7751.0
2 TraesCS7A01G233600 chr7B 86.082 1243 74 33 1 1183 159508853 159510056 0.000000e+00 1245.0
3 TraesCS7A01G233600 chr7B 95.528 492 18 3 7000 7488 159515942 159516432 0.000000e+00 784.0
4 TraesCS7A01G233600 chr7B 93.930 313 19 0 7580 7892 159516432 159516744 2.580000e-129 473.0
5 TraesCS7A01G233600 chr7B 90.547 201 14 3 1586 1786 159510426 159510621 2.180000e-65 261.0
6 TraesCS7A01G233600 chr7D 94.307 3162 153 13 3953 7101 195626181 195629328 0.000000e+00 4817.0
7 TraesCS7A01G233600 chr7D 92.875 2737 135 21 1234 3955 195623409 195626100 0.000000e+00 3919.0
8 TraesCS7A01G233600 chr7D 85.415 1241 77 31 1 1183 195622108 195623302 0.000000e+00 1194.0
9 TraesCS7A01G233600 chr7D 93.137 408 20 5 7086 7488 195629343 195629747 6.820000e-165 592.0
10 TraesCS7A01G233600 chr7D 93.312 314 20 1 7580 7892 195629747 195630060 5.580000e-126 462.0
11 TraesCS7A01G233600 chr7D 93.333 105 7 0 7486 7590 489010784 489010680 1.060000e-33 156.0
12 TraesCS7A01G233600 chr7D 93.269 104 7 0 7484 7587 182833557 182833454 3.810000e-33 154.0
13 TraesCS7A01G233600 chr7D 94.059 101 6 0 7486 7586 592857613 592857513 3.810000e-33 154.0
14 TraesCS7A01G233600 chr6D 95.050 101 4 1 7483 7583 428262038 428262137 2.950000e-34 158.0
15 TraesCS7A01G233600 chr5D 94.118 102 6 0 7485 7586 513514663 513514562 1.060000e-33 156.0
16 TraesCS7A01G233600 chr6A 94.059 101 6 0 7486 7586 23355077 23355177 3.810000e-33 154.0
17 TraesCS7A01G233600 chr3D 91.743 109 7 2 7480 7587 48070905 48071012 4.930000e-32 150.0
18 TraesCS7A01G233600 chr2B 91.589 107 9 0 7477 7583 575876516 575876622 1.770000e-31 148.0
19 TraesCS7A01G233600 chr4B 88.525 122 13 1 7487 7608 555241981 555242101 6.380000e-31 147.0
20 TraesCS7A01G233600 chr2D 100.000 33 0 0 1767 1799 120554703 120554671 2.380000e-05 62.1
21 TraesCS7A01G233600 chr2A 100.000 33 0 0 1767 1799 124382087 124382055 2.380000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G233600 chr7A 205458137 205466028 7891 False 14574.0 14574 100.0000 1 7892 1 chr7A.!!$F1 7891
1 TraesCS7A01G233600 chr7B 159508853 159516744 7891 False 2102.8 7751 91.9618 1 7892 5 chr7B.!!$F1 7891
2 TraesCS7A01G233600 chr7D 195622108 195630060 7952 False 2196.8 4817 91.8092 1 7892 5 chr7D.!!$F1 7891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 1028 0.028747 ATGATCCACCCATCCCTCCA 60.029 55.000 0.0 0.0 0.00 3.86 F
1883 2164 0.035056 CCTTGGAGTTGCCCTGTAGG 60.035 60.000 0.0 0.0 39.47 3.18 F
2866 3147 0.321653 GAGACCAGGTTTGATGCGGT 60.322 55.000 0.0 0.0 0.00 5.68 F
4356 4733 1.668047 GCTGATTGGCTTGTTGACAGC 60.668 52.381 0.0 0.0 41.33 4.40 F
4860 5239 0.178990 GTGACAACTCCTTTGGGGCT 60.179 55.000 0.0 0.0 39.84 5.19 F
5714 6112 0.602905 GTGCTGGTACGGGCATATCC 60.603 60.000 13.1 0.0 41.02 2.59 F
6578 6980 1.655484 CGCCACATTAGATGACAGCA 58.345 50.000 0.0 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2882 3163 1.694150 CCAACACTGAGAACCAGAGGA 59.306 52.381 0.00 0.00 45.78 3.71 R
3484 3774 0.035534 ATTCATGTACCCTGTGCGCA 60.036 50.000 5.66 5.66 0.00 6.09 R
4553 4930 2.309755 TCTTGCATCAGGGAAATCCACT 59.690 45.455 1.22 0.00 38.24 4.00 R
5714 6112 0.092014 CAGCTTCTTCGAACTTCGCG 59.908 55.000 0.00 0.00 40.21 5.87 R
6578 6980 0.039618 ATGGCTTGAACCCGGACAAT 59.960 50.000 0.73 0.00 0.00 2.71 R
6634 7036 0.824109 TACCTCCATGGCAGAGAACG 59.176 55.000 6.96 0.00 40.22 3.95 R
7673 8199 0.888619 CGTGTCAGGTCTGCTCCTAA 59.111 55.000 0.00 0.00 35.87 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 56 2.641321 TCAGCCCCAAGATCATCCTATG 59.359 50.000 0.00 0.00 0.00 2.23
52 61 5.553162 AGCCCCAAGATCATCCTATGAAATA 59.447 40.000 0.00 0.00 43.50 1.40
91 100 4.329462 TCCAAATTAGCCAAAACACACC 57.671 40.909 0.00 0.00 0.00 4.16
129 138 9.547753 GCTTATATTTCTAGACCAGATCAAACA 57.452 33.333 0.00 0.00 31.77 2.83
169 186 8.244113 TCATATGCCATATAAGAACTCTGTACG 58.756 37.037 0.00 0.00 0.00 3.67
176 193 8.691727 CCATATAAGAACTCTGTACGAATTTCG 58.308 37.037 16.84 16.84 46.93 3.46
181 198 0.108041 TCTGTACGAATTTCGGCCCC 60.108 55.000 21.71 7.77 45.59 5.80
183 200 0.036448 TGTACGAATTTCGGCCCCAA 59.964 50.000 21.71 0.00 45.59 4.12
260 285 5.393027 CCACTTGCACTACCAACCATATTTC 60.393 44.000 0.00 0.00 0.00 2.17
347 372 1.068741 AGCTCGTCCACGTTTTCTTCT 59.931 47.619 0.00 0.00 40.80 2.85
363 388 6.975196 TTTCTTCTGATTTGTGGGAATTCA 57.025 33.333 7.93 0.00 0.00 2.57
377 402 0.040425 AATTCAGACGTGCAAACCGC 60.040 50.000 0.00 0.00 42.89 5.68
426 451 0.534203 GGGCTCAAAGTGTTCGGACA 60.534 55.000 0.00 0.00 0.00 4.02
474 499 1.143305 GATGATCGGCGTTGGAGATG 58.857 55.000 6.85 0.00 0.00 2.90
538 563 9.158233 CCAAATCTCATTGAAATAATTGCAACT 57.842 29.630 0.00 0.00 31.84 3.16
573 598 4.944048 ACTTGCCGGGCATAAATAAAATC 58.056 39.130 24.49 0.00 38.76 2.17
575 600 5.128663 ACTTGCCGGGCATAAATAAAATCTT 59.871 36.000 24.49 0.00 38.76 2.40
654 710 2.288825 GGGAGTAAAGTTTTGCAAGCCC 60.289 50.000 0.00 0.00 0.00 5.19
663 719 0.031857 TTTGCAAGCCCGTCAACATG 59.968 50.000 0.00 0.00 0.00 3.21
791 847 2.793317 AAATCAGGCCCCAGCACCAG 62.793 60.000 0.00 0.00 42.56 4.00
840 917 0.319083 ACACGACACCGCTATGGAAA 59.681 50.000 0.00 0.00 42.00 3.13
841 918 1.066430 ACACGACACCGCTATGGAAAT 60.066 47.619 0.00 0.00 42.00 2.17
842 919 1.327460 CACGACACCGCTATGGAAATG 59.673 52.381 0.00 0.00 42.00 2.32
843 920 0.937304 CGACACCGCTATGGAAATGG 59.063 55.000 0.00 0.00 42.00 3.16
844 921 1.472552 CGACACCGCTATGGAAATGGA 60.473 52.381 0.00 0.00 42.00 3.41
865 942 1.378531 TGCAAGTCAACACACCTCAC 58.621 50.000 0.00 0.00 0.00 3.51
899 981 1.392710 CGTCCCCACTACCAGCCTAG 61.393 65.000 0.00 0.00 0.00 3.02
901 983 1.383248 CCCCACTACCAGCCTAGCT 60.383 63.158 0.00 0.00 40.77 3.32
903 985 1.041437 CCCACTACCAGCCTAGCTAC 58.959 60.000 0.00 0.00 36.40 3.58
945 1027 0.403271 CATGATCCACCCATCCCTCC 59.597 60.000 0.00 0.00 0.00 4.30
946 1028 0.028747 ATGATCCACCCATCCCTCCA 60.029 55.000 0.00 0.00 0.00 3.86
947 1029 0.028747 TGATCCACCCATCCCTCCAT 60.029 55.000 0.00 0.00 0.00 3.41
948 1030 0.695347 GATCCACCCATCCCTCCATC 59.305 60.000 0.00 0.00 0.00 3.51
949 1031 0.773700 ATCCACCCATCCCTCCATCC 60.774 60.000 0.00 0.00 0.00 3.51
950 1032 2.822637 CCACCCATCCCTCCATCCG 61.823 68.421 0.00 0.00 0.00 4.18
951 1033 2.072487 CACCCATCCCTCCATCCGT 61.072 63.158 0.00 0.00 0.00 4.69
952 1034 1.766461 ACCCATCCCTCCATCCGTC 60.766 63.158 0.00 0.00 0.00 4.79
953 1035 2.737180 CCATCCCTCCATCCGTCG 59.263 66.667 0.00 0.00 0.00 5.12
1154 1246 1.660917 CTATCTTCTCGTCCCCGCC 59.339 63.158 0.00 0.00 0.00 6.13
1188 1294 2.139118 GGAGTTCAGCTATCCATTCGC 58.861 52.381 0.00 0.00 33.08 4.70
1212 1337 2.544685 CTTGAAGCGATCGTCCAGAAT 58.455 47.619 17.81 0.00 0.00 2.40
1250 1406 3.656559 TGGCGTCACCTACTTTAGAAAC 58.343 45.455 0.00 0.00 40.22 2.78
1253 1409 4.861462 GGCGTCACCTACTTTAGAAACTAC 59.139 45.833 0.00 0.00 34.51 2.73
1254 1410 5.336293 GGCGTCACCTACTTTAGAAACTACT 60.336 44.000 0.00 0.00 34.51 2.57
1255 1411 6.127897 GGCGTCACCTACTTTAGAAACTACTA 60.128 42.308 0.00 0.00 34.51 1.82
1256 1412 7.416101 GGCGTCACCTACTTTAGAAACTACTAT 60.416 40.741 0.00 0.00 34.51 2.12
1387 1585 9.686683 AGGGTAACATATGGATTATGCTATTTC 57.313 33.333 7.80 0.00 41.29 2.17
1473 1671 6.573434 TCATAAAAAGAGCGATGCTTCTAGA 58.427 36.000 0.00 0.00 39.88 2.43
1513 1715 0.807275 TGTGATCATGCGCTCTTCCG 60.807 55.000 9.73 0.00 0.00 4.30
1522 1724 1.696832 GCGCTCTTCCGGTTTAGCAG 61.697 60.000 19.49 14.35 34.60 4.24
1524 1726 1.809684 GCTCTTCCGGTTTAGCAGTT 58.190 50.000 16.28 0.00 35.05 3.16
1531 1733 1.599419 CCGGTTTAGCAGTTGTGTTGC 60.599 52.381 0.00 0.00 41.83 4.17
1535 1737 3.175929 GTTTAGCAGTTGTGTTGCGTTT 58.824 40.909 0.00 0.00 45.98 3.60
1553 1755 5.041287 GCGTTTTTAGCCTATGGAAATTCC 58.959 41.667 4.79 4.79 36.96 3.01
1558 1760 3.303351 AGCCTATGGAAATTCCCTGTG 57.697 47.619 9.87 0.00 35.03 3.66
1571 1773 1.354031 TCCCTGTGGCTGCTTATTGAA 59.646 47.619 0.00 0.00 0.00 2.69
1581 1783 3.253188 GCTGCTTATTGAACAGGTGACAA 59.747 43.478 0.00 0.00 31.94 3.18
1606 1808 4.708421 AGATGCCATGTCTAATGTTTTGCT 59.292 37.500 0.00 0.00 0.00 3.91
1621 1823 6.317789 TGTTTTGCTCAAGGAGTTCTTATG 57.682 37.500 0.00 0.00 33.68 1.90
1749 1964 6.216569 TCTCAGTAATAGACAATCATTCGCC 58.783 40.000 0.00 0.00 0.00 5.54
1750 1965 5.912892 TCAGTAATAGACAATCATTCGCCA 58.087 37.500 0.00 0.00 0.00 5.69
1751 1966 6.345298 TCAGTAATAGACAATCATTCGCCAA 58.655 36.000 0.00 0.00 0.00 4.52
1752 1967 6.479990 TCAGTAATAGACAATCATTCGCCAAG 59.520 38.462 0.00 0.00 0.00 3.61
1753 1968 6.258727 CAGTAATAGACAATCATTCGCCAAGT 59.741 38.462 0.00 0.00 0.00 3.16
1754 1969 7.438160 CAGTAATAGACAATCATTCGCCAAGTA 59.562 37.037 0.00 0.00 0.00 2.24
1755 1970 8.150945 AGTAATAGACAATCATTCGCCAAGTAT 58.849 33.333 0.00 0.00 0.00 2.12
1756 1971 7.426929 AATAGACAATCATTCGCCAAGTATC 57.573 36.000 0.00 0.00 0.00 2.24
1757 1972 4.769688 AGACAATCATTCGCCAAGTATCA 58.230 39.130 0.00 0.00 0.00 2.15
1758 1973 5.185454 AGACAATCATTCGCCAAGTATCAA 58.815 37.500 0.00 0.00 0.00 2.57
1759 1974 5.065218 AGACAATCATTCGCCAAGTATCAAC 59.935 40.000 0.00 0.00 0.00 3.18
1760 1975 4.699735 ACAATCATTCGCCAAGTATCAACA 59.300 37.500 0.00 0.00 0.00 3.33
1761 1976 5.182950 ACAATCATTCGCCAAGTATCAACAA 59.817 36.000 0.00 0.00 0.00 2.83
1762 1977 6.127647 ACAATCATTCGCCAAGTATCAACAAT 60.128 34.615 0.00 0.00 0.00 2.71
1763 1978 5.895636 TCATTCGCCAAGTATCAACAATT 57.104 34.783 0.00 0.00 0.00 2.32
1764 1979 5.639757 TCATTCGCCAAGTATCAACAATTG 58.360 37.500 3.24 3.24 0.00 2.32
1765 1980 3.485947 TCGCCAAGTATCAACAATTGC 57.514 42.857 5.05 0.00 0.00 3.56
1774 1989 6.808321 AGTATCAACAATTGCTACTCCCTA 57.192 37.500 5.05 0.00 37.92 3.53
1875 2156 0.250727 TAGTGCACCCTTGGAGTTGC 60.251 55.000 14.63 0.00 0.00 4.17
1883 2164 0.035056 CCTTGGAGTTGCCCTGTAGG 60.035 60.000 0.00 0.00 39.47 3.18
1894 2175 7.404671 AGTTGCCCTGTAGGTTTATTATTTG 57.595 36.000 0.00 0.00 38.26 2.32
1895 2176 6.951778 AGTTGCCCTGTAGGTTTATTATTTGT 59.048 34.615 0.00 0.00 38.26 2.83
1898 2179 8.196378 TGCCCTGTAGGTTTATTATTTGTTTT 57.804 30.769 0.00 0.00 38.26 2.43
1900 2181 8.092068 GCCCTGTAGGTTTATTATTTGTTTTGT 58.908 33.333 0.00 0.00 38.26 2.83
1946 2227 9.895138 GGTCTATTGAAATGGTAGGTTAAAGTA 57.105 33.333 0.00 0.00 0.00 2.24
2000 2281 8.157476 ACAGTACCAACACAAGATTCTAAAGAT 58.843 33.333 0.00 0.00 0.00 2.40
2054 2335 1.228063 CCATCCGGATTCCAGCCAG 60.228 63.158 16.19 0.02 0.00 4.85
2219 2500 3.964031 CTGCTCTAAGATCCCTACCACTT 59.036 47.826 0.00 0.00 0.00 3.16
2321 2602 6.545666 TGTTTCCTTCAGTTGTTGACATATGT 59.454 34.615 8.43 8.43 34.94 2.29
2379 2660 2.042831 GCTTCAGCTGTTGCCGGAT 61.043 57.895 14.67 0.00 40.80 4.18
2618 2899 9.834628 ATTAATACTTTCATGTGGTTTTGTACG 57.165 29.630 0.00 0.00 0.00 3.67
2619 2900 4.561735 ACTTTCATGTGGTTTTGTACGG 57.438 40.909 0.00 0.00 0.00 4.02
2625 2906 2.877335 TGTGGTTTTGTACGGTTTTGC 58.123 42.857 0.00 0.00 0.00 3.68
2642 2923 6.294286 CGGTTTTGCCCTTGTCTATTTTTCTA 60.294 38.462 0.00 0.00 0.00 2.10
2678 2959 7.639113 TCTTGTGGAAACTATGTTTTTCAGT 57.361 32.000 0.00 0.00 35.08 3.41
2681 2962 6.801575 TGTGGAAACTATGTTTTTCAGTTCC 58.198 36.000 0.00 0.00 35.08 3.62
2866 3147 0.321653 GAGACCAGGTTTGATGCGGT 60.322 55.000 0.00 0.00 0.00 5.68
3210 3493 9.381038 AGAGTAAGGTTGTGGATATATGTACAT 57.619 33.333 13.93 13.93 0.00 2.29
3300 3590 3.713288 TCTAACAACACGTGTCCTTCTG 58.287 45.455 23.61 18.19 40.60 3.02
3305 3595 2.675844 CAACACGTGTCCTTCTGAACAA 59.324 45.455 23.61 0.00 0.00 2.83
3326 3616 8.834749 AACAAGAGTCTCTAACAAGTAAATCC 57.165 34.615 1.88 0.00 0.00 3.01
3338 3628 6.525578 ACAAGTAAATCCATAGACGAGACA 57.474 37.500 0.00 0.00 0.00 3.41
3477 3767 5.704978 TGTGATCCAAATTTGTGAGATTCGA 59.295 36.000 16.73 4.90 0.00 3.71
3484 3774 6.348786 CCAAATTTGTGAGATTCGACATGAGT 60.349 38.462 16.73 0.00 0.00 3.41
3486 3776 2.610433 TGTGAGATTCGACATGAGTGC 58.390 47.619 0.00 0.00 0.00 4.40
3689 3981 7.213678 CCTTGGATCCTGTCTCTATAAAAGAC 58.786 42.308 14.23 7.64 42.83 3.01
3724 4016 6.018589 TCGAACATAGCATCTAATCCTCTG 57.981 41.667 0.00 0.00 0.00 3.35
3951 4245 7.864108 TCTGTTACATGCAAGCTGTAATTAT 57.136 32.000 13.05 0.00 40.22 1.28
3980 4357 9.120538 CCTTACAAGTATGTATTTTATGTGCCT 57.879 33.333 0.00 0.00 41.51 4.75
4218 4595 2.034878 CCTGAGGCTACATCTGCACTA 58.965 52.381 0.00 0.00 0.00 2.74
4313 4690 7.824704 AGTTGCATCGCTAGAATATGAATAG 57.175 36.000 0.00 0.00 0.00 1.73
4356 4733 1.668047 GCTGATTGGCTTGTTGACAGC 60.668 52.381 0.00 0.00 41.33 4.40
4499 4876 5.581874 ACCAAAGCAAGACACAAATGAAAAG 59.418 36.000 0.00 0.00 0.00 2.27
4553 4930 4.140447 AGTTCTATCATATGGAGACCCCCA 60.140 45.833 2.13 0.00 41.05 4.96
4767 5144 7.167468 CAGGGTGAAGTTCTTATTTCGTTTTTG 59.833 37.037 4.17 0.00 0.00 2.44
4796 5175 3.118629 TGCTTCATACCTAGGCTTGTCAG 60.119 47.826 9.30 8.52 0.00 3.51
4812 5191 5.450412 GCTTGTCAGAATTTTTGTGTCTCCA 60.450 40.000 0.00 0.00 0.00 3.86
4860 5239 0.178990 GTGACAACTCCTTTGGGGCT 60.179 55.000 0.00 0.00 39.84 5.19
4871 5250 1.747325 TTTGGGGCTGTGCTTCAAGC 61.747 55.000 1.04 1.04 42.82 4.01
4916 5295 5.560722 TGATGTTGTCCACCTTTCTCTAA 57.439 39.130 0.00 0.00 0.00 2.10
4953 5332 1.917872 TATTGTGGGGTTGTCTTGGC 58.082 50.000 0.00 0.00 0.00 4.52
4979 5358 2.993264 CAAGCACTGGCCCAAGGG 60.993 66.667 0.00 0.00 42.56 3.95
5029 5408 4.136796 CACAATTCTGACTTGGGAACAGA 58.863 43.478 11.70 0.00 44.54 3.41
5033 5412 3.753294 TCTGACTTGGGAACAGAAGTC 57.247 47.619 0.00 0.00 44.56 3.01
5034 5413 3.309296 TCTGACTTGGGAACAGAAGTCT 58.691 45.455 11.90 0.00 44.59 3.24
5035 5414 3.322254 TCTGACTTGGGAACAGAAGTCTC 59.678 47.826 11.90 0.00 44.59 3.36
5036 5415 3.309296 TGACTTGGGAACAGAAGTCTCT 58.691 45.455 11.90 0.00 44.59 3.10
5037 5416 4.480115 TGACTTGGGAACAGAAGTCTCTA 58.520 43.478 11.90 0.00 44.59 2.43
5038 5417 5.087323 TGACTTGGGAACAGAAGTCTCTAT 58.913 41.667 11.90 0.00 44.59 1.98
5039 5418 5.544176 TGACTTGGGAACAGAAGTCTCTATT 59.456 40.000 11.90 0.00 44.59 1.73
5040 5419 6.043854 ACTTGGGAACAGAAGTCTCTATTC 57.956 41.667 0.00 0.00 44.54 1.75
5068 5457 6.723052 AGAGATTTCATTGTGTTCCAAAGGAT 59.277 34.615 0.00 0.00 36.44 3.24
5081 5470 5.102953 TCCAAAGGATTCATGTAGTCCTG 57.897 43.478 14.13 6.57 41.40 3.86
5093 5482 6.223852 TCATGTAGTCCTGAAGAAACTCAAC 58.776 40.000 0.00 0.00 0.00 3.18
5164 5553 8.396272 ACATGCCTAACCTTTATGATATCAAC 57.604 34.615 9.99 0.00 0.00 3.18
5168 5557 6.770785 GCCTAACCTTTATGATATCAACCACA 59.229 38.462 9.99 0.00 0.00 4.17
5205 5597 4.888239 TGTCACCTATTACCTCTCTACTGC 59.112 45.833 0.00 0.00 0.00 4.40
5209 5601 1.776662 ATTACCTCTCTACTGCGCCA 58.223 50.000 4.18 0.00 0.00 5.69
5210 5602 1.552578 TTACCTCTCTACTGCGCCAA 58.447 50.000 4.18 0.00 0.00 4.52
5215 5607 2.200067 CTCTCTACTGCGCCAAATCAG 58.800 52.381 4.18 0.00 36.45 2.90
5242 5634 1.213094 CGGTGTCACCTCACGTGTTC 61.213 60.000 19.82 1.97 43.51 3.18
5245 5637 1.299926 GTCACCTCACGTGTTCGCT 60.300 57.895 16.51 0.00 43.51 4.93
5263 5655 6.653320 TGTTCGCTGACAAATTAGGATTAACT 59.347 34.615 0.00 0.00 0.00 2.24
5264 5656 6.903883 TCGCTGACAAATTAGGATTAACTC 57.096 37.500 0.00 0.00 0.00 3.01
5282 5674 4.308899 ACTCCAGCTATTAGTAAGTGCG 57.691 45.455 0.00 0.00 0.00 5.34
5283 5675 3.053455 CTCCAGCTATTAGTAAGTGCGC 58.947 50.000 0.00 0.00 0.00 6.09
5284 5676 2.693591 TCCAGCTATTAGTAAGTGCGCT 59.306 45.455 9.73 0.00 0.00 5.92
5285 5677 3.887110 TCCAGCTATTAGTAAGTGCGCTA 59.113 43.478 9.73 0.00 0.00 4.26
5328 5725 7.610305 CAGTACAGTATGATTTTACAAAGGGGT 59.390 37.037 0.00 0.00 39.69 4.95
5329 5726 8.828751 AGTACAGTATGATTTTACAAAGGGGTA 58.171 33.333 0.00 0.00 39.69 3.69
5349 5747 7.775561 AGGGGTAATGTCAAAACTCTAATGATC 59.224 37.037 0.00 0.00 0.00 2.92
5375 5773 4.141801 ACACATTATAGTACCCGTGTGCAT 60.142 41.667 11.84 0.00 40.27 3.96
5391 5789 5.335127 GTGTGCATGGATGAAATAACTGTC 58.665 41.667 0.00 0.00 0.00 3.51
5410 5808 2.687935 GTCAAAGGTCAGAAGTTTGGCA 59.312 45.455 5.74 0.00 36.12 4.92
5515 5913 3.499338 TCATTGTCTCCTTGTTTGGCAT 58.501 40.909 0.00 0.00 0.00 4.40
5530 5928 1.824230 TGGCATGACATGTTAAAGGGC 59.176 47.619 16.62 4.14 0.00 5.19
5610 6008 7.825761 TGATTCTAATTGCTCACTCTTCAATGA 59.174 33.333 0.00 0.00 31.53 2.57
5630 6028 7.548427 TCAATGATGACAGAAACTTTGCAAAAA 59.452 29.630 13.84 0.00 0.00 1.94
5714 6112 0.602905 GTGCTGGTACGGGCATATCC 60.603 60.000 13.10 0.00 41.02 2.59
5774 6172 7.904016 TGTGTTGTACAATTCCGGGAGGTTT 62.904 44.000 12.26 0.00 43.69 3.27
5903 6303 6.061022 AGTGGGGTTCATTCTTTTGTTTTT 57.939 33.333 0.00 0.00 0.00 1.94
5906 6306 7.125053 AGTGGGGTTCATTCTTTTGTTTTTCTA 59.875 33.333 0.00 0.00 0.00 2.10
5907 6307 7.931407 GTGGGGTTCATTCTTTTGTTTTTCTAT 59.069 33.333 0.00 0.00 0.00 1.98
5908 6308 8.490311 TGGGGTTCATTCTTTTGTTTTTCTATT 58.510 29.630 0.00 0.00 0.00 1.73
5941 6341 7.055667 TGAGTATAGCTGGAAGTTAATGAGG 57.944 40.000 0.00 0.00 31.88 3.86
5967 6367 8.501580 GTGCTAATTTAGGTCGTTAAAGAAGTT 58.498 33.333 5.61 0.00 0.00 2.66
5994 6394 2.359975 GCTGGGGTTTGCGCTACT 60.360 61.111 9.73 0.00 0.00 2.57
6066 6466 6.183347 TGGATTTTGTGGTGTCCAAAATTTT 58.817 32.000 11.18 0.00 46.84 1.82
6136 6536 3.123273 ACTGGAATGGGCTACAGGTATT 58.877 45.455 0.00 0.00 35.34 1.89
6170 6570 7.857389 CACATCCTTATTTTTCGGATACATGTG 59.143 37.037 9.11 0.00 35.84 3.21
6171 6571 7.556275 ACATCCTTATTTTTCGGATACATGTGT 59.444 33.333 9.11 0.10 35.84 3.72
6203 6605 5.592104 CATGGCATGGACATAATATGCAT 57.408 39.130 19.80 3.79 46.74 3.96
6225 6627 6.202188 GCATATGAAAAATTCTGGGCTGAATG 59.798 38.462 6.97 0.00 36.84 2.67
6227 6629 6.855763 ATGAAAAATTCTGGGCTGAATGTA 57.144 33.333 6.95 0.00 36.84 2.29
6234 6636 4.897509 TCTGGGCTGAATGTAGGATATG 57.102 45.455 0.00 0.00 0.00 1.78
6236 6638 3.584406 CTGGGCTGAATGTAGGATATGGA 59.416 47.826 0.00 0.00 0.00 3.41
6256 6658 4.816385 TGGATTCTGTTTCAGTGACTTCAC 59.184 41.667 0.77 0.77 46.77 3.18
6269 6671 5.607119 GTGACTTCACAAATCGTAATGGT 57.393 39.130 4.43 0.00 45.75 3.55
6270 6672 5.997385 GTGACTTCACAAATCGTAATGGTT 58.003 37.500 4.43 0.00 45.75 3.67
6271 6673 7.124347 GTGACTTCACAAATCGTAATGGTTA 57.876 36.000 4.43 0.00 45.75 2.85
6272 6674 7.234384 GTGACTTCACAAATCGTAATGGTTAG 58.766 38.462 4.43 0.00 45.75 2.34
6277 6679 7.136289 TCACAAATCGTAATGGTTAGTTTCC 57.864 36.000 0.00 0.00 0.00 3.13
6300 6702 5.163612 CCTTATTTAGTTTTCTGCTGAGGGC 60.164 44.000 0.00 0.00 42.22 5.19
6329 6731 6.829229 TTGCATGTCTGAATTCTGAAATCT 57.171 33.333 15.70 0.00 0.00 2.40
6336 6738 8.394971 TGTCTGAATTCTGAAATCTTGCTAAA 57.605 30.769 15.70 0.00 0.00 1.85
6361 6763 3.433709 CGCATTTGAGTGTGTGTTCAAA 58.566 40.909 2.58 2.58 44.60 2.69
6505 6907 4.722700 AAGGCCGGAGCGCACATT 62.723 61.111 11.47 0.00 41.24 2.71
6538 6940 2.431683 GGCCTCACAACAGCTGGA 59.568 61.111 19.93 4.34 0.00 3.86
6578 6980 1.655484 CGCCACATTAGATGACAGCA 58.345 50.000 0.00 0.00 0.00 4.41
6582 6984 3.379372 GCCACATTAGATGACAGCATTGT 59.621 43.478 0.00 0.00 41.18 2.71
7032 7523 4.171754 GACGAAACTATAGGGTGTGTGAC 58.828 47.826 4.43 0.00 0.00 3.67
7043 7534 4.088762 GTGTGACGTGGCATGCCG 62.089 66.667 30.87 21.99 39.42 5.69
7126 7645 2.102588 AGGCGGTCATACATTACAGGAC 59.897 50.000 0.00 0.00 0.00 3.85
7187 7706 2.225017 CCTTTTGCCCTTCCTTAGACCA 60.225 50.000 0.00 0.00 0.00 4.02
7309 7829 0.343372 AGGCTCCCCATAAGTCCAGA 59.657 55.000 0.00 0.00 0.00 3.86
7324 7844 4.087182 AGTCCAGAAATTCCGTACTCAGA 58.913 43.478 0.00 0.00 0.00 3.27
7429 7954 2.125106 CAGTAAGGACGCCCAGGC 60.125 66.667 0.00 0.00 37.85 4.85
7488 8014 2.225068 ATGACCATGCTACGTGCTAC 57.775 50.000 0.00 0.00 43.37 3.58
7489 8015 1.182667 TGACCATGCTACGTGCTACT 58.817 50.000 0.00 0.00 43.37 2.57
7490 8016 1.134367 TGACCATGCTACGTGCTACTC 59.866 52.381 0.00 0.00 43.37 2.59
7491 8017 0.460311 ACCATGCTACGTGCTACTCC 59.540 55.000 0.00 0.00 43.37 3.85
7492 8018 0.249489 CCATGCTACGTGCTACTCCC 60.249 60.000 0.00 0.00 43.37 4.30
7493 8019 0.747255 CATGCTACGTGCTACTCCCT 59.253 55.000 0.00 0.00 43.37 4.20
7494 8020 1.033574 ATGCTACGTGCTACTCCCTC 58.966 55.000 0.00 0.00 43.37 4.30
7495 8021 1.035932 TGCTACGTGCTACTCCCTCC 61.036 60.000 0.00 0.00 43.37 4.30
7496 8022 2.023318 CTACGTGCTACTCCCTCCG 58.977 63.158 0.00 0.00 0.00 4.63
7497 8023 0.747283 CTACGTGCTACTCCCTCCGT 60.747 60.000 0.00 0.00 0.00 4.69
7498 8024 0.322816 TACGTGCTACTCCCTCCGTT 60.323 55.000 0.00 0.00 0.00 4.44
7499 8025 1.139095 CGTGCTACTCCCTCCGTTC 59.861 63.158 0.00 0.00 0.00 3.95
7500 8026 1.516423 GTGCTACTCCCTCCGTTCC 59.484 63.158 0.00 0.00 0.00 3.62
7501 8027 1.077805 TGCTACTCCCTCCGTTCCA 59.922 57.895 0.00 0.00 0.00 3.53
7502 8028 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
7503 8029 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
7504 8030 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
7505 8031 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
7506 8032 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
7507 8033 4.624604 GCTACTCCCTCCGTTCCAAAATAA 60.625 45.833 0.00 0.00 0.00 1.40
7508 8034 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
7509 8035 4.930696 ACTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
7510 8036 4.705023 ACTCCCTCCGTTCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
7511 8037 4.924625 TCCCTCCGTTCCAAAATAAATGA 58.075 39.130 0.00 0.00 0.00 2.57
7512 8038 4.703093 TCCCTCCGTTCCAAAATAAATGAC 59.297 41.667 0.00 0.00 0.00 3.06
7513 8039 4.705023 CCCTCCGTTCCAAAATAAATGACT 59.295 41.667 0.00 0.00 0.00 3.41
7514 8040 5.163652 CCCTCCGTTCCAAAATAAATGACTC 60.164 44.000 0.00 0.00 0.00 3.36
7515 8041 5.414454 CCTCCGTTCCAAAATAAATGACTCA 59.586 40.000 0.00 0.00 0.00 3.41
7516 8042 6.072175 CCTCCGTTCCAAAATAAATGACTCAA 60.072 38.462 0.00 0.00 0.00 3.02
7517 8043 6.674066 TCCGTTCCAAAATAAATGACTCAAC 58.326 36.000 0.00 0.00 0.00 3.18
7518 8044 6.488683 TCCGTTCCAAAATAAATGACTCAACT 59.511 34.615 0.00 0.00 0.00 3.16
7519 8045 7.013846 TCCGTTCCAAAATAAATGACTCAACTT 59.986 33.333 0.00 0.00 0.00 2.66
7520 8046 7.651704 CCGTTCCAAAATAAATGACTCAACTTT 59.348 33.333 0.00 0.00 0.00 2.66
7521 8047 9.672086 CGTTCCAAAATAAATGACTCAACTTTA 57.328 29.630 0.00 0.00 0.00 1.85
7572 8098 9.696917 ACAAAGTTGAATCATCTATTTTGGAAC 57.303 29.630 10.86 0.00 40.04 3.62
7573 8099 8.853345 CAAAGTTGAATCATCTATTTTGGAACG 58.147 33.333 0.00 0.00 35.74 3.95
7574 8100 7.088589 AGTTGAATCATCTATTTTGGAACGG 57.911 36.000 0.00 0.00 0.00 4.44
7575 8101 6.884295 AGTTGAATCATCTATTTTGGAACGGA 59.116 34.615 0.00 0.00 0.00 4.69
7576 8102 6.925610 TGAATCATCTATTTTGGAACGGAG 57.074 37.500 0.00 0.00 0.00 4.63
7577 8103 5.822519 TGAATCATCTATTTTGGAACGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
7578 8104 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
7579 8105 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7586 8112 1.946984 TGGAACGGAGGGAGTACATT 58.053 50.000 0.00 0.00 0.00 2.71
7598 8124 3.629398 GGGAGTACATTGGAGAAAGCATG 59.371 47.826 0.00 0.00 0.00 4.06
7709 8236 4.758674 TGACACGGATACTAGGCATACTAC 59.241 45.833 0.00 0.00 0.00 2.73
7734 8261 6.245724 GCGAACTACCATTACATTTGTACAC 58.754 40.000 0.00 0.00 0.00 2.90
7846 8373 4.314121 GACAGCATATCTAGGGAAAGCAG 58.686 47.826 0.00 0.00 0.00 4.24
7847 8374 3.072944 CAGCATATCTAGGGAAAGCAGC 58.927 50.000 0.00 0.00 0.00 5.25
7855 8382 4.350245 TCTAGGGAAAGCAGCAGTACTTA 58.650 43.478 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.027385 GATGATCTTGGGGCTGAAACC 58.973 52.381 0.00 0.00 0.00 3.27
47 56 8.057011 TGGAAGGTTATAAAGGAAGGGTATTTC 58.943 37.037 0.00 0.00 0.00 2.17
52 61 5.871324 TTGGAAGGTTATAAAGGAAGGGT 57.129 39.130 0.00 0.00 0.00 4.34
129 138 3.490348 GCATATGAAAGCTACCATGGGT 58.510 45.455 18.09 4.30 40.16 4.51
169 186 0.246360 CAAGGTTGGGGCCGAAATTC 59.754 55.000 1.31 0.00 0.00 2.17
176 193 2.223464 TAGGCATCAAGGTTGGGGCC 62.223 60.000 14.19 14.19 43.44 5.80
221 246 3.789459 GCAAGTGGCAAAAATGCACTTTG 60.789 43.478 15.57 15.57 43.97 2.77
236 261 1.909700 ATGGTTGGTAGTGCAAGTGG 58.090 50.000 0.00 0.00 0.00 4.00
281 306 6.285990 GCATCATAAGGCCAATCTGAATTTT 58.714 36.000 5.01 0.00 0.00 1.82
307 332 6.174720 AGCTTCCTACCATCGATCAAATTA 57.825 37.500 0.00 0.00 0.00 1.40
347 372 3.501828 CACGTCTGAATTCCCACAAATCA 59.498 43.478 2.27 0.00 0.00 2.57
377 402 0.036164 TCCACCAAACATCCACGGAG 59.964 55.000 0.00 0.00 0.00 4.63
426 451 1.435577 GTAAATGTCTGGACCGCGTT 58.564 50.000 4.92 0.00 0.00 4.84
436 461 5.109210 TCATCAAATCGCTCGTAAATGTCT 58.891 37.500 0.00 0.00 0.00 3.41
507 532 8.875803 CAATTATTTCAATGAGATTTGGTGGTG 58.124 33.333 0.00 0.00 0.00 4.17
632 657 2.288825 GGCTTGCAAAACTTTACTCCCC 60.289 50.000 0.00 0.00 0.00 4.81
654 710 6.432607 TTCTAGGAGTAGTACATGTTGACG 57.567 41.667 2.30 0.00 0.00 4.35
689 745 2.844348 CTGCCTTTCCCCTAAACTCCTA 59.156 50.000 0.00 0.00 0.00 2.94
692 748 2.572104 TCTCTGCCTTTCCCCTAAACTC 59.428 50.000 0.00 0.00 0.00 3.01
693 749 2.632537 TCTCTGCCTTTCCCCTAAACT 58.367 47.619 0.00 0.00 0.00 2.66
694 750 3.282885 CATCTCTGCCTTTCCCCTAAAC 58.717 50.000 0.00 0.00 0.00 2.01
695 751 2.357154 GCATCTCTGCCTTTCCCCTAAA 60.357 50.000 0.00 0.00 42.88 1.85
696 752 1.212935 GCATCTCTGCCTTTCCCCTAA 59.787 52.381 0.00 0.00 42.88 2.69
697 753 0.839946 GCATCTCTGCCTTTCCCCTA 59.160 55.000 0.00 0.00 42.88 3.53
698 754 1.611965 GCATCTCTGCCTTTCCCCT 59.388 57.895 0.00 0.00 42.88 4.79
745 801 2.064762 GGATTGCGATTCTCCGATCTG 58.935 52.381 0.00 0.00 0.00 2.90
840 917 2.297033 GGTGTGTTGACTTGCATTCCAT 59.703 45.455 0.00 0.00 0.00 3.41
841 918 1.680735 GGTGTGTTGACTTGCATTCCA 59.319 47.619 0.00 0.00 0.00 3.53
842 919 1.956477 AGGTGTGTTGACTTGCATTCC 59.044 47.619 0.00 0.00 0.00 3.01
843 920 2.618241 TGAGGTGTGTTGACTTGCATTC 59.382 45.455 0.00 0.00 0.00 2.67
844 921 2.358898 GTGAGGTGTGTTGACTTGCATT 59.641 45.455 0.00 0.00 0.00 3.56
865 942 1.515521 GGACGGGCAAACAGTGGAAG 61.516 60.000 0.00 0.00 0.00 3.46
899 981 0.725117 GGTTGGTGCGTGTATGTAGC 59.275 55.000 0.00 0.00 0.00 3.58
901 983 0.685660 TGGGTTGGTGCGTGTATGTA 59.314 50.000 0.00 0.00 0.00 2.29
903 985 0.451383 CATGGGTTGGTGCGTGTATG 59.549 55.000 0.00 0.00 0.00 2.39
1097 1189 2.271173 GTACCTTTGGGGCGGAGG 59.729 66.667 0.00 0.00 39.10 4.30
1098 1190 1.078426 CAGTACCTTTGGGGCGGAG 60.078 63.158 0.00 0.00 39.10 4.63
1099 1191 3.074281 CAGTACCTTTGGGGCGGA 58.926 61.111 0.00 0.00 39.10 5.54
1100 1192 1.906105 TAGCAGTACCTTTGGGGCGG 61.906 60.000 0.00 0.00 39.10 6.13
1101 1193 0.743345 GTAGCAGTACCTTTGGGGCG 60.743 60.000 0.00 0.00 39.10 6.13
1102 1194 0.326927 TGTAGCAGTACCTTTGGGGC 59.673 55.000 0.00 0.00 39.10 5.80
1103 1195 1.628846 AGTGTAGCAGTACCTTTGGGG 59.371 52.381 0.00 0.00 41.89 4.96
1154 1246 2.300152 TGAACTCCTCACCTAGTTGCAG 59.700 50.000 0.00 0.00 36.10 4.41
1177 1269 3.608707 GCTTCAAGCATGCGAATGGATAG 60.609 47.826 13.01 11.59 41.89 2.08
1188 1294 0.302890 GGACGATCGCTTCAAGCATG 59.697 55.000 16.60 0.00 42.58 4.06
1212 1337 1.459455 CCAAATGCGTGTTCACCCCA 61.459 55.000 0.00 0.00 0.00 4.96
1215 1340 4.243383 GCCAAATGCGTGTTCACC 57.757 55.556 0.00 0.00 0.00 4.02
1250 1406 8.981724 TCAAAACTGCACTGTAGTTATAGTAG 57.018 34.615 12.33 1.53 37.39 2.57
1253 1409 6.313905 CCCTCAAAACTGCACTGTAGTTATAG 59.686 42.308 12.33 9.87 37.39 1.31
1254 1410 6.014070 TCCCTCAAAACTGCACTGTAGTTATA 60.014 38.462 12.33 1.98 37.39 0.98
1255 1411 5.003804 CCCTCAAAACTGCACTGTAGTTAT 58.996 41.667 12.33 1.98 37.39 1.89
1256 1412 4.101898 TCCCTCAAAACTGCACTGTAGTTA 59.898 41.667 12.33 0.00 37.39 2.24
1387 1585 6.226787 ACTAGTTCCAAGAACACAAGATGAG 58.773 40.000 9.92 0.00 0.00 2.90
1473 1671 9.912634 ATCACATGATTTCGTTAAACTTCAAAT 57.087 25.926 0.00 0.00 0.00 2.32
1513 1715 1.064952 ACGCAACACAACTGCTAAACC 59.935 47.619 0.00 0.00 37.67 3.27
1522 1724 2.804647 AGGCTAAAAACGCAACACAAC 58.195 42.857 0.00 0.00 0.00 3.32
1524 1726 3.057876 CCATAGGCTAAAAACGCAACACA 60.058 43.478 0.00 0.00 0.00 3.72
1531 1733 5.359860 AGGGAATTTCCATAGGCTAAAAACG 59.640 40.000 17.08 0.00 38.64 3.60
1535 1737 5.200483 CACAGGGAATTTCCATAGGCTAAA 58.800 41.667 17.08 0.00 38.64 1.85
1553 1755 2.161855 TGTTCAATAAGCAGCCACAGG 58.838 47.619 0.00 0.00 0.00 4.00
1558 1760 2.162408 GTCACCTGTTCAATAAGCAGCC 59.838 50.000 0.00 0.00 0.00 4.85
1571 1773 0.473755 TGGCATCTGTTGTCACCTGT 59.526 50.000 0.00 0.00 34.22 4.00
1581 1783 5.622914 GCAAAACATTAGACATGGCATCTGT 60.623 40.000 0.00 0.00 0.00 3.41
1606 1808 6.017109 GTGAAAGTTGCATAAGAACTCCTTGA 60.017 38.462 0.00 0.00 36.34 3.02
1718 1920 8.144155 TGATTGTCTATTACTGAGAGTAGACG 57.856 38.462 14.05 0.00 43.64 4.18
1753 1968 5.128171 ACGTAGGGAGTAGCAATTGTTGATA 59.872 40.000 7.40 0.00 0.00 2.15
1754 1969 4.081087 ACGTAGGGAGTAGCAATTGTTGAT 60.081 41.667 7.40 0.00 0.00 2.57
1755 1970 3.259876 ACGTAGGGAGTAGCAATTGTTGA 59.740 43.478 7.40 0.00 0.00 3.18
1756 1971 3.596214 ACGTAGGGAGTAGCAATTGTTG 58.404 45.455 7.40 0.00 0.00 3.33
1757 1972 3.975168 ACGTAGGGAGTAGCAATTGTT 57.025 42.857 7.40 3.27 0.00 2.83
1758 1973 3.369157 GGAACGTAGGGAGTAGCAATTGT 60.369 47.826 7.40 0.00 0.00 2.71
1759 1974 3.195661 GGAACGTAGGGAGTAGCAATTG 58.804 50.000 0.00 0.00 0.00 2.32
1760 1975 2.835764 TGGAACGTAGGGAGTAGCAATT 59.164 45.455 0.00 0.00 0.00 2.32
1761 1976 2.463752 TGGAACGTAGGGAGTAGCAAT 58.536 47.619 0.00 0.00 0.00 3.56
1762 1977 1.927487 TGGAACGTAGGGAGTAGCAA 58.073 50.000 0.00 0.00 0.00 3.91
1763 1978 2.154567 ATGGAACGTAGGGAGTAGCA 57.845 50.000 0.00 0.00 0.00 3.49
1764 1979 4.868314 ATTATGGAACGTAGGGAGTAGC 57.132 45.455 0.00 0.00 0.00 3.58
1765 1980 6.651975 AGAATTATGGAACGTAGGGAGTAG 57.348 41.667 0.00 0.00 0.00 2.57
1774 1989 3.682858 CCACGACAAGAATTATGGAACGT 59.317 43.478 0.00 0.00 0.00 3.99
1820 2101 1.818642 AAGATGTGTCCTGCTTCAGC 58.181 50.000 0.00 0.00 42.50 4.26
1875 2156 9.990360 AACAAAACAAATAATAAACCTACAGGG 57.010 29.630 0.00 0.00 40.27 4.45
1894 2175 7.059488 CACATGTTATGCTCGAGTTAACAAAAC 59.941 37.037 29.75 18.73 38.79 2.43
1895 2176 7.075121 CACATGTTATGCTCGAGTTAACAAAA 58.925 34.615 29.75 17.22 38.79 2.44
1898 2179 4.629634 CCACATGTTATGCTCGAGTTAACA 59.370 41.667 28.94 28.94 39.41 2.41
1900 2181 4.827692 ACCACATGTTATGCTCGAGTTAA 58.172 39.130 15.13 9.78 0.00 2.01
1908 2189 7.201848 CCATTTCAATAGACCACATGTTATGCT 60.202 37.037 0.00 0.00 0.00 3.79
2037 2318 1.895707 GCTGGCTGGAATCCGGATG 60.896 63.158 19.95 6.41 31.56 3.51
2195 2476 2.252714 GGTAGGGATCTTAGAGCAGGG 58.747 57.143 0.00 0.00 0.00 4.45
2219 2500 5.454755 GGATACAATAAGCTTAGGCACTCCA 60.455 44.000 12.54 0.00 41.75 3.86
2321 2602 2.224426 ACGGCTGACACTGTTTATTCCA 60.224 45.455 0.00 0.00 0.00 3.53
2379 2660 6.212840 AGCCATTAATATCCCACATACCAA 57.787 37.500 0.00 0.00 0.00 3.67
2618 2899 5.853936 AGAAAAATAGACAAGGGCAAAACC 58.146 37.500 0.00 0.00 37.93 3.27
2678 2959 5.306937 TGAGTTTACCATCAGAGTTCAGGAA 59.693 40.000 0.00 0.00 0.00 3.36
2681 2962 6.402983 GCAATGAGTTTACCATCAGAGTTCAG 60.403 42.308 0.00 0.00 0.00 3.02
2813 3094 6.207417 CCATGATACCTCCAACAATGTAATCC 59.793 42.308 0.00 0.00 0.00 3.01
2882 3163 1.694150 CCAACACTGAGAACCAGAGGA 59.306 52.381 0.00 0.00 45.78 3.71
3145 3428 6.875726 GCATTGTCTGTAATGATATCCTAGCA 59.124 38.462 0.00 0.00 39.79 3.49
3211 3494 8.862097 ACCCCTCTCTTATATATCTACCAATCT 58.138 37.037 0.00 0.00 0.00 2.40
3214 3497 8.566979 CCTACCCCTCTCTTATATATCTACCAA 58.433 40.741 0.00 0.00 0.00 3.67
3215 3498 7.916064 TCCTACCCCTCTCTTATATATCTACCA 59.084 40.741 0.00 0.00 0.00 3.25
3216 3499 8.347557 TCCTACCCCTCTCTTATATATCTACC 57.652 42.308 0.00 0.00 0.00 3.18
3228 3511 2.227703 TCCTTCATCCTACCCCTCTCT 58.772 52.381 0.00 0.00 0.00 3.10
3266 3549 5.163794 CGTGTTGTTAGAGACACCTGTTTTT 60.164 40.000 1.51 0.00 42.35 1.94
3267 3550 4.331717 CGTGTTGTTAGAGACACCTGTTTT 59.668 41.667 1.51 0.00 42.35 2.43
3268 3551 3.869246 CGTGTTGTTAGAGACACCTGTTT 59.131 43.478 1.51 0.00 42.35 2.83
3269 3552 3.118884 ACGTGTTGTTAGAGACACCTGTT 60.119 43.478 0.00 0.00 42.35 3.16
3270 3553 2.429610 ACGTGTTGTTAGAGACACCTGT 59.570 45.455 0.00 0.00 42.35 4.00
3271 3554 2.794910 CACGTGTTGTTAGAGACACCTG 59.205 50.000 7.58 0.00 42.35 4.00
3272 3555 2.429610 ACACGTGTTGTTAGAGACACCT 59.570 45.455 17.22 0.00 42.35 4.00
3273 3556 2.793232 GACACGTGTTGTTAGAGACACC 59.207 50.000 24.26 0.63 42.35 4.16
3275 3558 2.691526 AGGACACGTGTTGTTAGAGACA 59.308 45.455 24.26 0.00 39.17 3.41
3276 3559 3.366440 AGGACACGTGTTGTTAGAGAC 57.634 47.619 24.26 6.16 39.17 3.36
3278 3561 3.736252 CAGAAGGACACGTGTTGTTAGAG 59.264 47.826 24.26 7.04 39.17 2.43
3279 3562 3.382227 TCAGAAGGACACGTGTTGTTAGA 59.618 43.478 24.26 15.96 39.17 2.10
3280 3563 3.713288 TCAGAAGGACACGTGTTGTTAG 58.287 45.455 24.26 14.16 39.17 2.34
3281 3564 3.804786 TCAGAAGGACACGTGTTGTTA 57.195 42.857 24.26 1.98 39.17 2.41
3282 3565 2.676342 GTTCAGAAGGACACGTGTTGTT 59.324 45.455 24.26 18.54 39.17 2.83
3290 3580 4.038642 AGAGACTCTTGTTCAGAAGGACAC 59.961 45.833 0.00 0.00 0.00 3.67
3300 3590 8.927721 GGATTTACTTGTTAGAGACTCTTGTTC 58.072 37.037 10.96 0.21 0.00 3.18
3305 3595 9.702253 TCTATGGATTTACTTGTTAGAGACTCT 57.298 33.333 10.47 10.47 0.00 3.24
3477 3767 1.826340 TACCCTGTGCGCACTCATGT 61.826 55.000 37.59 28.68 0.00 3.21
3484 3774 0.035534 ATTCATGTACCCTGTGCGCA 60.036 50.000 5.66 5.66 0.00 6.09
3486 3776 1.398041 CACATTCATGTACCCTGTGCG 59.602 52.381 0.00 0.00 39.39 5.34
3568 3860 0.665972 GCTTGAAAAATTCGCGGCCA 60.666 50.000 6.13 0.00 0.00 5.36
3689 3981 7.758980 AGATGCTATGTTCGATTAGCTCAATAG 59.241 37.037 17.93 5.84 41.13 1.73
3724 4016 6.073602 GCAAATCAAATCAAGGTCCAAGAAAC 60.074 38.462 0.00 0.00 0.00 2.78
4008 4385 5.278315 GGTCTTTTACTCACCGCAAGAAAAT 60.278 40.000 0.00 0.00 43.02 1.82
4119 4496 7.603024 AGGCAAACAGTAACTGTAGATAAAGAC 59.397 37.037 0.00 0.00 44.62 3.01
4313 4690 5.220681 GCTTAGTTCATTCGATGACCCTTTC 60.221 44.000 0.00 0.00 39.39 2.62
4356 4733 8.502387 GTTTATATGATAAGGAAGCAGCTTCAG 58.498 37.037 31.68 0.00 41.77 3.02
4553 4930 2.309755 TCTTGCATCAGGGAAATCCACT 59.690 45.455 1.22 0.00 38.24 4.00
4681 5058 4.402056 ACATACCAGATAACCTTCCACG 57.598 45.455 0.00 0.00 0.00 4.94
4767 5144 4.061596 GCCTAGGTATGAAGCATGAGAAC 58.938 47.826 11.31 0.00 0.00 3.01
4796 5175 6.690530 TGGATCATTGGAGACACAAAAATTC 58.309 36.000 0.00 0.00 42.67 2.17
4812 5191 6.821616 ACTATCTTGACCTCTTGGATCATT 57.178 37.500 0.00 0.00 37.04 2.57
4871 5250 2.159421 ACGGTGAAGCGTACTACAGATG 60.159 50.000 5.64 0.00 0.00 2.90
4938 5317 1.515521 CTTCGCCAAGACAACCCCAC 61.516 60.000 0.00 0.00 0.00 4.61
4953 5332 2.671177 CCAGTGCTTGCGGTCTTCG 61.671 63.158 0.00 0.00 42.76 3.79
5011 5390 4.646572 GACTTCTGTTCCCAAGTCAGAAT 58.353 43.478 6.89 0.15 45.38 2.40
5035 5414 9.565213 GGAACACAATGAAATCTCTTTGAATAG 57.435 33.333 1.93 0.00 38.42 1.73
5036 5415 9.076781 TGGAACACAATGAAATCTCTTTGAATA 57.923 29.630 1.93 0.00 38.42 1.75
5037 5416 7.954835 TGGAACACAATGAAATCTCTTTGAAT 58.045 30.769 1.93 0.00 38.42 2.57
5038 5417 7.345422 TGGAACACAATGAAATCTCTTTGAA 57.655 32.000 1.93 0.00 38.42 2.69
5039 5418 6.957920 TGGAACACAATGAAATCTCTTTGA 57.042 33.333 1.93 0.00 38.42 2.69
5040 5419 7.170320 CCTTTGGAACACAATGAAATCTCTTTG 59.830 37.037 0.00 0.00 39.29 2.77
5050 5439 5.539574 ACATGAATCCTTTGGAACACAATGA 59.460 36.000 0.00 0.00 39.29 2.57
5060 5449 5.102953 TCAGGACTACATGAATCCTTTGG 57.897 43.478 12.57 4.95 41.07 3.28
5068 5457 6.419484 TGAGTTTCTTCAGGACTACATGAA 57.581 37.500 0.00 0.00 43.03 2.57
5081 5470 2.737252 CCCAGCTACGTTGAGTTTCTTC 59.263 50.000 0.00 0.00 0.00 2.87
5093 5482 3.543537 AGCTCATCCCCAGCTACG 58.456 61.111 0.00 0.00 45.76 3.51
5128 5517 2.511600 GGCATGTACGCCGAGCTT 60.512 61.111 0.00 0.00 43.52 3.74
5138 5527 9.502091 GTTGATATCATAAAGGTTAGGCATGTA 57.498 33.333 6.17 0.00 0.00 2.29
5164 5553 6.071952 AGGTGACAATAGCAAGTATTTTGTGG 60.072 38.462 0.00 0.00 31.09 4.17
5182 5574 4.888239 GCAGTAGAGAGGTAATAGGTGACA 59.112 45.833 0.00 0.00 0.00 3.58
5205 5597 2.095263 ACCGAACATTTCTGATTTGGCG 60.095 45.455 0.00 0.00 30.91 5.69
5209 5601 4.023193 GGTGACACCGAACATTTCTGATTT 60.023 41.667 9.33 0.00 0.00 2.17
5210 5602 3.502211 GGTGACACCGAACATTTCTGATT 59.498 43.478 9.33 0.00 0.00 2.57
5215 5607 2.223377 GTGAGGTGACACCGAACATTTC 59.777 50.000 18.93 9.61 44.90 2.17
5242 5634 6.049263 GGAGTTAATCCTAATTTGTCAGCG 57.951 41.667 0.00 0.00 45.64 5.18
5263 5655 2.693591 AGCGCACTTACTAATAGCTGGA 59.306 45.455 11.47 0.00 31.76 3.86
5264 5656 3.099267 AGCGCACTTACTAATAGCTGG 57.901 47.619 11.47 0.00 31.76 4.85
5270 5662 8.033626 AGACTAAAACTTAGCGCACTTACTAAT 58.966 33.333 11.47 0.00 0.00 1.73
5271 5663 7.373493 AGACTAAAACTTAGCGCACTTACTAA 58.627 34.615 11.47 0.00 0.00 2.24
5274 5666 7.752557 ATAGACTAAAACTTAGCGCACTTAC 57.247 36.000 11.47 0.00 0.00 2.34
5282 5674 8.932791 TGTACTGCAAATAGACTAAAACTTAGC 58.067 33.333 0.00 0.00 0.00 3.09
5284 5676 9.991906 ACTGTACTGCAAATAGACTAAAACTTA 57.008 29.630 0.00 0.00 0.00 2.24
5285 5677 8.904099 ACTGTACTGCAAATAGACTAAAACTT 57.096 30.769 0.00 0.00 0.00 2.66
5349 5747 5.461078 GCACACGGGTACTATAATGTGTAAG 59.539 44.000 0.00 3.74 38.40 2.34
5367 5765 4.142622 ACAGTTATTTCATCCATGCACACG 60.143 41.667 0.00 0.00 0.00 4.49
5375 5773 6.303054 TGACCTTTGACAGTTATTTCATCCA 58.697 36.000 0.00 0.00 0.00 3.41
5391 5789 4.326504 AATGCCAAACTTCTGACCTTTG 57.673 40.909 1.05 1.05 0.00 2.77
5515 5913 1.801771 CGAACGCCCTTTAACATGTCA 59.198 47.619 0.00 0.00 0.00 3.58
5530 5928 5.269459 AGAACTGAAATGAATGACGAACG 57.731 39.130 0.00 0.00 0.00 3.95
5598 5996 6.798315 AGTTTCTGTCATCATTGAAGAGTG 57.202 37.500 0.00 0.00 32.48 3.51
5651 6049 4.226761 CCTCACCGATTTGTTGCTTTAAC 58.773 43.478 0.00 0.00 39.80 2.01
5714 6112 0.092014 CAGCTTCTTCGAACTTCGCG 59.908 55.000 0.00 0.00 40.21 5.87
5774 6172 2.742116 GCCCCTTCCAGCCATACGA 61.742 63.158 0.00 0.00 0.00 3.43
5876 6276 6.195600 ACAAAAGAATGAACCCCACTACTA 57.804 37.500 0.00 0.00 0.00 1.82
5881 6281 6.112734 AGAAAAACAAAAGAATGAACCCCAC 58.887 36.000 0.00 0.00 0.00 4.61
5882 6282 6.306643 AGAAAAACAAAAGAATGAACCCCA 57.693 33.333 0.00 0.00 0.00 4.96
5903 6303 9.237187 CCAGCTATACTCAAGTCAGATAATAGA 57.763 37.037 0.00 0.00 0.00 1.98
5906 6306 8.484214 TTCCAGCTATACTCAAGTCAGATAAT 57.516 34.615 0.00 0.00 0.00 1.28
5907 6307 7.561722 ACTTCCAGCTATACTCAAGTCAGATAA 59.438 37.037 0.00 0.00 0.00 1.75
5908 6308 7.063593 ACTTCCAGCTATACTCAAGTCAGATA 58.936 38.462 0.00 0.00 0.00 1.98
5910 6310 5.265191 ACTTCCAGCTATACTCAAGTCAGA 58.735 41.667 0.00 0.00 0.00 3.27
5941 6341 8.026341 ACTTCTTTAACGACCTAAATTAGCAC 57.974 34.615 0.00 0.00 0.00 4.40
5967 6367 0.555769 AAACCCCAGCAAGAACAGGA 59.444 50.000 0.00 0.00 0.00 3.86
6136 6536 6.127758 CCGAAAAATAAGGATGTGGTGAATCA 60.128 38.462 0.00 0.00 0.00 2.57
6199 6601 4.710865 TCAGCCCAGAATTTTTCATATGCA 59.289 37.500 0.00 0.00 0.00 3.96
6203 6605 6.855763 ACATTCAGCCCAGAATTTTTCATA 57.144 33.333 0.00 0.00 36.13 2.15
6215 6617 3.597182 TCCATATCCTACATTCAGCCCA 58.403 45.455 0.00 0.00 0.00 5.36
6217 6619 5.879223 CAGAATCCATATCCTACATTCAGCC 59.121 44.000 0.00 0.00 0.00 4.85
6218 6620 6.471146 ACAGAATCCATATCCTACATTCAGC 58.529 40.000 0.00 0.00 0.00 4.26
6225 6627 7.439655 GTCACTGAAACAGAATCCATATCCTAC 59.560 40.741 5.76 0.00 35.18 3.18
6227 6629 6.157645 AGTCACTGAAACAGAATCCATATCCT 59.842 38.462 5.76 0.00 35.18 3.24
6234 6636 4.816385 TGTGAAGTCACTGAAACAGAATCC 59.184 41.667 12.43 0.00 46.55 3.01
6236 6638 6.757897 TTTGTGAAGTCACTGAAACAGAAT 57.242 33.333 12.43 0.00 46.55 2.40
6267 6669 9.622004 GCAGAAAACTAAATAAGGAAACTAACC 57.378 33.333 0.00 0.00 42.68 2.85
6270 6672 9.787435 TCAGCAGAAAACTAAATAAGGAAACTA 57.213 29.630 0.00 0.00 42.68 2.24
6272 6674 8.023706 CCTCAGCAGAAAACTAAATAAGGAAAC 58.976 37.037 0.00 0.00 0.00 2.78
6277 6679 5.884771 GCCCTCAGCAGAAAACTAAATAAG 58.115 41.667 0.00 0.00 42.97 1.73
6300 6702 6.617879 TCAGAATTCAGACATGCAAATCTTG 58.382 36.000 8.44 0.00 0.00 3.02
6336 6738 2.229792 ACACACACTCAAATGCGGAAT 58.770 42.857 0.00 0.00 0.00 3.01
6505 6907 1.300620 GCCCATATGCGCGACTACA 60.301 57.895 12.10 0.00 0.00 2.74
6538 6940 2.230940 CGTCTTTGCGCCGATCGAT 61.231 57.895 18.66 0.00 41.67 3.59
6578 6980 0.039618 ATGGCTTGAACCCGGACAAT 59.960 50.000 0.73 0.00 0.00 2.71
6582 6984 1.976474 GCAATGGCTTGAACCCGGA 60.976 57.895 0.73 0.00 36.96 5.14
6610 7012 3.998672 TCAGGGTTGACGCCGACC 61.999 66.667 0.00 0.00 44.62 4.79
6619 7021 2.932614 GAGAACGATGATGTCAGGGTTG 59.067 50.000 6.29 0.00 0.00 3.77
6634 7036 0.824109 TACCTCCATGGCAGAGAACG 59.176 55.000 6.96 0.00 40.22 3.95
6675 7081 5.721960 AGACACCATATCTGTTACTTGAGGT 59.278 40.000 0.00 0.00 0.00 3.85
6945 7351 8.341903 TCAGTAACAATTTACATGTGACAACAG 58.658 33.333 9.11 0.00 40.25 3.16
7008 7499 2.165030 ACACACCCTATAGTTTCGTCGG 59.835 50.000 0.00 0.00 0.00 4.79
7043 7534 2.432628 CGCCTGGACCAACGAGAC 60.433 66.667 10.35 0.00 0.00 3.36
7126 7645 3.302365 AGTGAAAAACATTGATGGGCG 57.698 42.857 0.00 0.00 0.00 6.13
7187 7706 4.873187 ATGAAACACATGGGCTCATTAGCT 60.873 41.667 0.00 0.00 42.14 3.32
7276 7796 7.588866 ATGGGGAGCCTCTCATATTTTTATA 57.411 36.000 0.00 0.00 31.08 0.98
7286 7806 1.692762 GGACTTATGGGGAGCCTCTCA 60.693 57.143 0.00 0.00 31.08 3.27
7309 7829 4.330944 TGTGTGTCTGAGTACGGAATTT 57.669 40.909 0.00 0.00 32.84 1.82
7324 7844 2.305928 TGCTGTTGCCTTTATGTGTGT 58.694 42.857 0.00 0.00 38.71 3.72
7429 7954 9.057089 ACGAATTATTAATCCAGAAGCTTTAGG 57.943 33.333 0.00 6.07 0.00 2.69
7488 8014 4.947388 TCATTTATTTTGGAACGGAGGGAG 59.053 41.667 0.00 0.00 0.00 4.30
7489 8015 4.703093 GTCATTTATTTTGGAACGGAGGGA 59.297 41.667 0.00 0.00 0.00 4.20
7490 8016 4.705023 AGTCATTTATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
7491 8017 5.414454 TGAGTCATTTATTTTGGAACGGAGG 59.586 40.000 0.00 0.00 0.00 4.30
7492 8018 6.494893 TGAGTCATTTATTTTGGAACGGAG 57.505 37.500 0.00 0.00 0.00 4.63
7493 8019 6.488683 AGTTGAGTCATTTATTTTGGAACGGA 59.511 34.615 0.00 0.00 0.00 4.69
7494 8020 6.677913 AGTTGAGTCATTTATTTTGGAACGG 58.322 36.000 0.00 0.00 0.00 4.44
7495 8021 8.574196 AAAGTTGAGTCATTTATTTTGGAACG 57.426 30.769 0.00 0.00 0.00 3.95
7546 8072 9.696917 GTTCCAAAATAGATGATTCAACTTTGT 57.303 29.630 1.47 0.00 0.00 2.83
7547 8073 8.853345 CGTTCCAAAATAGATGATTCAACTTTG 58.147 33.333 1.47 1.65 0.00 2.77
7548 8074 8.028938 CCGTTCCAAAATAGATGATTCAACTTT 58.971 33.333 1.47 0.00 0.00 2.66
7549 8075 7.393234 TCCGTTCCAAAATAGATGATTCAACTT 59.607 33.333 1.47 0.00 0.00 2.66
7550 8076 6.884295 TCCGTTCCAAAATAGATGATTCAACT 59.116 34.615 1.83 1.83 0.00 3.16
7551 8077 7.083875 TCCGTTCCAAAATAGATGATTCAAC 57.916 36.000 0.00 0.00 0.00 3.18
7552 8078 6.318648 CCTCCGTTCCAAAATAGATGATTCAA 59.681 38.462 0.00 0.00 0.00 2.69
7553 8079 5.822519 CCTCCGTTCCAAAATAGATGATTCA 59.177 40.000 0.00 0.00 0.00 2.57
7554 8080 5.239525 CCCTCCGTTCCAAAATAGATGATTC 59.760 44.000 0.00 0.00 0.00 2.52
7555 8081 5.104109 TCCCTCCGTTCCAAAATAGATGATT 60.104 40.000 0.00 0.00 0.00 2.57
7556 8082 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
7557 8083 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7558 8084 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7559 8085 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7560 8086 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7561 8087 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7562 8088 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
7563 8089 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
7564 8090 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
7565 8091 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
7566 8092 1.946984 ATGTACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
7567 8093 1.553248 CAATGTACTCCCTCCGTTCCA 59.447 52.381 0.00 0.00 0.00 3.53
7568 8094 1.134491 CCAATGTACTCCCTCCGTTCC 60.134 57.143 0.00 0.00 0.00 3.62
7569 8095 1.829222 TCCAATGTACTCCCTCCGTTC 59.171 52.381 0.00 0.00 0.00 3.95
7570 8096 1.831736 CTCCAATGTACTCCCTCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
7571 8097 1.006758 TCTCCAATGTACTCCCTCCGT 59.993 52.381 0.00 0.00 0.00 4.69
7572 8098 1.776662 TCTCCAATGTACTCCCTCCG 58.223 55.000 0.00 0.00 0.00 4.63
7573 8099 3.682999 GCTTTCTCCAATGTACTCCCTCC 60.683 52.174 0.00 0.00 0.00 4.30
7574 8100 3.055094 TGCTTTCTCCAATGTACTCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
7575 8101 2.912956 TGCTTTCTCCAATGTACTCCCT 59.087 45.455 0.00 0.00 0.00 4.20
7576 8102 3.350219 TGCTTTCTCCAATGTACTCCC 57.650 47.619 0.00 0.00 0.00 4.30
7577 8103 3.065925 GCATGCTTTCTCCAATGTACTCC 59.934 47.826 11.37 0.00 0.00 3.85
7578 8104 3.691118 TGCATGCTTTCTCCAATGTACTC 59.309 43.478 20.33 0.00 0.00 2.59
7579 8105 3.689347 TGCATGCTTTCTCCAATGTACT 58.311 40.909 20.33 0.00 0.00 2.73
7586 8112 2.423446 TATGCTGCATGCTTTCTCCA 57.577 45.000 24.59 7.06 43.37 3.86
7673 8199 0.888619 CGTGTCAGGTCTGCTCCTAA 59.111 55.000 0.00 0.00 35.87 2.69
7709 8236 4.593597 ACAAATGTAATGGTAGTTCGCG 57.406 40.909 0.00 0.00 0.00 5.87
7734 8261 2.421424 GCCTTACTTGCCTCTGACAATG 59.579 50.000 0.00 0.00 0.00 2.82
7759 8286 3.121030 CCTCTTGAACGCCGCTGG 61.121 66.667 0.00 0.00 0.00 4.85
7840 8367 7.921786 TGTATTGATTAAGTACTGCTGCTTT 57.078 32.000 0.00 0.00 0.00 3.51
7846 8373 7.957484 CACACACTTGTATTGATTAAGTACTGC 59.043 37.037 0.00 0.00 33.63 4.40
7847 8374 9.203421 TCACACACTTGTATTGATTAAGTACTG 57.797 33.333 0.00 0.00 33.63 2.74
7855 8382 6.293407 CCTCGTTTCACACACTTGTATTGATT 60.293 38.462 0.00 0.00 33.30 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.