Multiple sequence alignment - TraesCS7A01G233300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G233300 chr7A 100.000 3493 0 0 1 3493 205123515 205127007 0.000000e+00 6451.0
1 TraesCS7A01G233300 chr7A 88.945 1185 75 17 560 1719 204668619 204667466 0.000000e+00 1411.0
2 TraesCS7A01G233300 chr7A 82.588 626 47 19 1779 2378 204666697 204666108 2.420000e-136 496.0
3 TraesCS7A01G233300 chr7A 79.383 519 51 28 2432 2916 204666103 204665607 7.280000e-82 315.0
4 TraesCS7A01G233300 chr7A 86.624 157 17 3 3217 3373 71320671 71320823 1.670000e-38 171.0
5 TraesCS7A01G233300 chr7B 90.724 1477 72 27 260 1719 158936386 158937814 0.000000e+00 1908.0
6 TraesCS7A01G233300 chr7B 86.088 1186 78 43 392 1554 158555820 158554699 0.000000e+00 1195.0
7 TraesCS7A01G233300 chr7B 89.834 905 41 23 2136 3029 158939003 158939867 0.000000e+00 1114.0
8 TraesCS7A01G233300 chr7B 91.828 673 27 11 1724 2378 158938304 158938966 0.000000e+00 913.0
9 TraesCS7A01G233300 chr7B 83.813 278 35 7 1779 2049 158553781 158553507 4.470000e-64 255.0
10 TraesCS7A01G233300 chr7B 96.528 144 5 0 1 144 158928347 158928490 4.510000e-59 239.0
11 TraesCS7A01G233300 chr7B 82.759 290 11 8 2105 2378 158553157 158552891 4.540000e-54 222.0
12 TraesCS7A01G233300 chr7B 95.489 133 6 0 144 276 158933530 158933662 2.730000e-51 213.0
13 TraesCS7A01G233300 chr7B 88.333 60 6 1 209 268 158555918 158555860 1.740000e-08 71.3
14 TraesCS7A01G233300 chr7D 95.261 1034 29 6 638 1660 195279115 195280139 0.000000e+00 1620.0
15 TraesCS7A01G233300 chr7D 92.618 718 25 12 1657 2356 195280219 195280926 0.000000e+00 1007.0
16 TraesCS7A01G233300 chr7D 91.511 695 21 12 1726 2390 194793299 194792613 0.000000e+00 922.0
17 TraesCS7A01G233300 chr7D 91.038 703 30 11 660 1350 194794963 194794282 0.000000e+00 918.0
18 TraesCS7A01G233300 chr7D 81.770 757 59 36 778 1511 194792589 194791889 8.470000e-156 560.0
19 TraesCS7A01G233300 chr7D 90.049 412 22 11 1321 1719 194794230 194793825 1.860000e-142 516.0
20 TraesCS7A01G233300 chr7D 85.470 468 25 19 2414 2875 195280938 195281368 6.880000e-122 448.0
21 TraesCS7A01G233300 chr7D 79.764 509 46 27 2430 2916 194788206 194787733 2.020000e-82 316.0
22 TraesCS7A01G233300 chr7D 95.187 187 9 0 412 598 195278932 195279118 2.640000e-76 296.0
23 TraesCS7A01G233300 chr7D 85.252 278 33 6 1779 2053 194790689 194790417 2.650000e-71 279.0
24 TraesCS7A01G233300 chr7D 94.022 184 11 0 1 184 195276585 195276768 2.650000e-71 279.0
25 TraesCS7A01G233300 chr7D 89.286 168 9 1 2924 3091 195281371 195281529 5.910000e-48 202.0
26 TraesCS7A01G233300 chr7D 92.806 139 8 2 392 529 194795227 194795090 2.130000e-47 200.0
27 TraesCS7A01G233300 chr7D 100.000 37 0 0 280 316 194795264 194795228 6.260000e-08 69.4
28 TraesCS7A01G233300 chr2D 80.501 359 48 8 3106 3454 208856295 208855949 4.470000e-64 255.0
29 TraesCS7A01G233300 chr2D 93.506 77 5 0 317 393 270480463 270480387 7.920000e-22 115.0
30 TraesCS7A01G233300 chr4D 96.000 75 3 0 316 390 482160669 482160743 4.730000e-24 122.0
31 TraesCS7A01G233300 chr6B 90.323 93 7 2 306 398 396438748 396438658 1.700000e-23 121.0
32 TraesCS7A01G233300 chr6B 93.023 43 1 2 3453 3493 20495129 20495087 1.050000e-05 62.1
33 TraesCS7A01G233300 chr6B 93.023 43 1 2 3453 3493 20505746 20505704 1.050000e-05 62.1
34 TraesCS7A01G233300 chr1B 95.946 74 3 0 317 390 401618962 401619035 1.700000e-23 121.0
35 TraesCS7A01G233300 chr4B 94.521 73 4 0 318 390 270831745 270831673 2.850000e-21 113.0
36 TraesCS7A01G233300 chr3D 93.333 75 5 0 316 390 550194670 550194744 1.020000e-20 111.0
37 TraesCS7A01G233300 chr3D 100.000 37 0 0 3457 3493 297593107 297593143 6.260000e-08 69.4
38 TraesCS7A01G233300 chr1A 93.506 77 2 3 317 390 236718474 236718398 1.020000e-20 111.0
39 TraesCS7A01G233300 chr6D 93.243 74 5 0 317 390 458975439 458975366 3.690000e-20 110.0
40 TraesCS7A01G233300 chr2B 95.745 47 2 0 3206 3252 166666073 166666119 3.740000e-10 76.8
41 TraesCS7A01G233300 chr5B 93.478 46 3 0 3448 3493 160146187 160146232 6.260000e-08 69.4
42 TraesCS7A01G233300 chr5B 93.333 45 2 1 3448 3492 160146055 160146098 8.090000e-07 65.8
43 TraesCS7A01G233300 chr1D 100.000 37 0 0 3457 3493 374739553 374739589 6.260000e-08 69.4
44 TraesCS7A01G233300 chr3A 87.500 56 5 2 3440 3493 671627462 671627407 2.910000e-06 63.9
45 TraesCS7A01G233300 chr6A 87.273 55 5 2 3441 3493 104983943 104983997 1.050000e-05 62.1
46 TraesCS7A01G233300 chr4A 87.273 55 5 2 3441 3493 614364120 614364066 1.050000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G233300 chr7A 205123515 205127007 3492 False 6451.000000 6451 100.000000 1 3493 1 chr7A.!!$F2 3492
1 TraesCS7A01G233300 chr7A 204665607 204668619 3012 True 740.666667 1411 83.638667 560 2916 3 chr7A.!!$R1 2356
2 TraesCS7A01G233300 chr7B 158933530 158939867 6337 False 1037.000000 1908 91.968750 144 3029 4 chr7B.!!$F2 2885
3 TraesCS7A01G233300 chr7B 158552891 158555918 3027 True 435.825000 1195 85.248250 209 2378 4 chr7B.!!$R1 2169
4 TraesCS7A01G233300 chr7D 195276585 195281529 4944 False 642.000000 1620 91.974000 1 3091 6 chr7D.!!$F1 3090
5 TraesCS7A01G233300 chr7D 194787733 194795264 7531 True 472.550000 922 89.023750 280 2916 8 chr7D.!!$R1 2636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 5416 0.842635 GGTGATGCAGATTCTCCCCT 59.157 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2542 13244 0.106268 TGGCTTCAGGCTGGAAAACA 60.106 50.0 15.73 1.99 41.69 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.003519 AGAAAATTCATTCAGCGTACGC 57.996 40.909 32.17 32.17 42.33 4.42
58 59 3.544285 CGTACGCTTGCTTTCTAAGAGAG 59.456 47.826 0.52 0.00 0.00 3.20
94 95 1.430632 CCAGCACTGCGGCTTTATG 59.569 57.895 0.00 0.00 42.71 1.90
243 485 4.790718 AAAGTCCAACCAAGAAGTACCT 57.209 40.909 0.00 0.00 0.00 3.08
268 3249 4.581868 CCATTTGGGCATCACTCAAAAAT 58.418 39.130 0.00 0.00 34.63 1.82
270 3251 6.350906 CCATTTGGGCATCACTCAAAAATAT 58.649 36.000 0.00 0.00 34.63 1.28
272 3253 7.986320 CCATTTGGGCATCACTCAAAAATATTA 59.014 33.333 0.00 0.00 34.63 0.98
273 3254 8.819974 CATTTGGGCATCACTCAAAAATATTAC 58.180 33.333 0.00 0.00 34.63 1.89
274 3255 7.716799 TTGGGCATCACTCAAAAATATTACT 57.283 32.000 0.00 0.00 0.00 2.24
276 3257 8.815565 TGGGCATCACTCAAAAATATTACTTA 57.184 30.769 0.00 0.00 0.00 2.24
382 3373 6.913673 GCCAAAACGTCTTACATTTAGAAACA 59.086 34.615 0.00 0.00 0.00 2.83
389 3380 8.027771 ACGTCTTACATTTAGAAACAGAGGTAG 58.972 37.037 0.00 0.00 0.00 3.18
455 5218 3.957591 TCAGCTTGCCATTTTTGCATA 57.042 38.095 0.00 0.00 38.76 3.14
553 5316 2.501492 GCCTCTGCCATTGAGCAAT 58.499 52.632 2.25 0.00 43.52 3.56
636 5399 2.681778 CAGCAGACCCGAGGAGGT 60.682 66.667 0.00 0.00 45.12 3.85
653 5416 0.842635 GGTGATGCAGATTCTCCCCT 59.157 55.000 0.00 0.00 0.00 4.79
755 5549 1.878775 GCTTGTCGCTGATTTGCCT 59.121 52.632 0.00 0.00 35.14 4.75
867 5662 1.682854 CATTGCCACCACTCTTGTTGT 59.317 47.619 0.00 0.00 0.00 3.32
929 5729 8.564574 CGTAGTAGCACTAGTAGTAGTAGTAGT 58.435 40.741 15.79 16.38 43.52 2.73
1165 5969 1.594331 GGAGCTGGAAAAAGACGTGT 58.406 50.000 0.00 0.00 0.00 4.49
1208 6015 1.006571 GCAGCAGCAGCAACAACAT 60.007 52.632 4.63 0.00 45.49 2.71
1323 6147 5.525199 GCACATGCATCATCACATAATTGA 58.475 37.500 0.00 0.00 41.59 2.57
1366 6278 2.636412 GCAAAGGGAAAGGGCGGTC 61.636 63.158 0.00 0.00 0.00 4.79
1700 6737 7.661027 ACATATTTTTGTTCCTTCACCCATTTG 59.339 33.333 0.00 0.00 0.00 2.32
1856 10026 4.152647 AGGACAGCGTCAGAATATATCCA 58.847 43.478 10.14 0.00 33.68 3.41
2068 10256 3.551496 TTGCGGGCTCAGTCCCTTG 62.551 63.158 0.00 0.00 44.30 3.61
2148 10640 3.568430 TGTTCTCTCGCATATGGACGTAT 59.432 43.478 4.56 0.00 0.00 3.06
2260 12650 3.173965 CCTTCACTGGAAAGACCCTCTA 58.826 50.000 0.00 0.00 38.00 2.43
2292 12700 3.197766 TGTCGGCATCTCTTCCTTTACAT 59.802 43.478 0.00 0.00 0.00 2.29
2338 13020 4.158394 TGTGAGCCAAGCATTTCTATTTCC 59.842 41.667 0.00 0.00 0.00 3.13
2390 13072 3.635373 CCATGCCTATATCAATCCATGGC 59.365 47.826 6.96 0.00 42.00 4.40
2441 13124 4.529897 TCCGGAACATAGCTAGACTAACA 58.470 43.478 0.00 0.00 33.57 2.41
2537 13239 2.063378 ACAGCTAGCCTCCTGCCTC 61.063 63.158 12.13 0.00 42.71 4.70
2538 13240 1.761667 CAGCTAGCCTCCTGCCTCT 60.762 63.158 12.13 0.00 42.71 3.69
2539 13241 1.761667 AGCTAGCCTCCTGCCTCTG 60.762 63.158 12.13 0.00 42.71 3.35
2540 13242 2.820973 CTAGCCTCCTGCCTCTGC 59.179 66.667 0.00 0.00 42.71 4.26
2541 13243 2.765807 TAGCCTCCTGCCTCTGCC 60.766 66.667 0.00 0.00 42.71 4.85
2542 13244 3.323394 TAGCCTCCTGCCTCTGCCT 62.323 63.158 0.00 0.00 42.71 4.75
2543 13245 4.486503 GCCTCCTGCCTCTGCCTG 62.487 72.222 0.00 0.00 36.33 4.85
2544 13246 3.007920 CCTCCTGCCTCTGCCTGT 61.008 66.667 0.00 0.00 36.33 4.00
2545 13247 2.600729 CCTCCTGCCTCTGCCTGTT 61.601 63.158 0.00 0.00 36.33 3.16
2553 13255 1.246737 CCTCTGCCTGTTTTCCAGCC 61.247 60.000 0.00 0.00 40.06 4.85
2558 13260 0.600057 GCCTGTTTTCCAGCCTGAAG 59.400 55.000 0.00 0.00 40.06 3.02
2566 13268 0.545309 TCCAGCCTGAAGCCAGTACT 60.545 55.000 0.00 0.00 45.47 2.73
2567 13269 0.392193 CCAGCCTGAAGCCAGTACTG 60.392 60.000 16.34 16.34 45.47 2.74
2568 13270 1.023513 CAGCCTGAAGCCAGTACTGC 61.024 60.000 17.86 12.64 45.47 4.40
2569 13271 1.197430 AGCCTGAAGCCAGTACTGCT 61.197 55.000 17.86 14.67 45.47 4.24
2570 13272 0.742635 GCCTGAAGCCAGTACTGCTC 60.743 60.000 17.86 12.99 38.34 4.26
2671 13391 3.197265 CAATGATGATGGCACTACGACA 58.803 45.455 0.00 0.00 0.00 4.35
2788 13511 2.307098 GAGCCATGTCCCCAGCTATATT 59.693 50.000 0.00 0.00 35.23 1.28
2835 13573 3.788766 CGCTTGTACGCTGGTGCC 61.789 66.667 0.00 0.00 35.36 5.01
2958 13699 3.295093 TGACATTTCTTGGCTTTGGACA 58.705 40.909 0.00 0.00 32.91 4.02
3012 13753 1.626686 TCATGGCGTGTCCCAAAAAT 58.373 45.000 6.60 0.00 38.61 1.82
3044 13785 5.382664 TCTACATAAACCTTGGGGAATCC 57.617 43.478 0.00 0.00 36.25 3.01
3045 13786 4.791334 TCTACATAAACCTTGGGGAATCCA 59.209 41.667 0.09 0.00 45.43 3.41
3046 13787 4.625225 ACATAAACCTTGGGGAATCCAT 57.375 40.909 0.09 0.00 46.52 3.41
3116 13857 3.685435 GGTGGACCCATTGCAGTG 58.315 61.111 1.49 1.49 0.00 3.66
3117 13858 2.639327 GGTGGACCCATTGCAGTGC 61.639 63.158 8.58 8.58 0.00 4.40
3118 13859 2.672651 TGGACCCATTGCAGTGCG 60.673 61.111 11.20 0.00 0.00 5.34
3119 13860 4.120331 GGACCCATTGCAGTGCGC 62.120 66.667 11.20 0.00 42.89 6.09
3120 13861 4.120331 GACCCATTGCAGTGCGCC 62.120 66.667 11.20 0.00 41.33 6.53
3126 13867 3.976000 TTGCAGTGCGCCGCAAAT 61.976 55.556 15.84 1.87 44.71 2.32
3127 13868 2.621061 TTGCAGTGCGCCGCAAATA 61.621 52.632 15.84 0.00 44.71 1.40
3128 13869 2.576847 GCAGTGCGCCGCAAATAC 60.577 61.111 15.84 0.01 41.47 1.89
3129 13870 2.100216 CAGTGCGCCGCAAATACC 59.900 61.111 15.84 0.00 41.47 2.73
3130 13871 2.359354 AGTGCGCCGCAAATACCA 60.359 55.556 15.84 0.00 41.47 3.25
3131 13872 2.100216 GTGCGCCGCAAATACCAG 59.900 61.111 15.84 0.00 41.47 4.00
3132 13873 3.130819 TGCGCCGCAAATACCAGG 61.131 61.111 10.46 0.00 34.76 4.45
3133 13874 3.887868 GCGCCGCAAATACCAGGG 61.888 66.667 3.15 0.00 0.00 4.45
3134 13875 2.437716 CGCCGCAAATACCAGGGT 60.438 61.111 0.00 0.00 0.00 4.34
3135 13876 1.153329 CGCCGCAAATACCAGGGTA 60.153 57.895 0.00 0.00 34.87 3.69
3136 13877 0.745128 CGCCGCAAATACCAGGGTAA 60.745 55.000 1.69 0.00 33.99 2.85
3137 13878 1.465794 GCCGCAAATACCAGGGTAAA 58.534 50.000 1.69 0.00 33.99 2.01
3138 13879 1.819903 GCCGCAAATACCAGGGTAAAA 59.180 47.619 1.69 0.00 33.99 1.52
3139 13880 2.231721 GCCGCAAATACCAGGGTAAAAA 59.768 45.455 1.69 0.00 33.99 1.94
3160 13901 6.716898 AAAATCGTAAAAAGGTAGGAGACG 57.283 37.500 0.00 0.00 0.00 4.18
3161 13902 5.649782 AATCGTAAAAAGGTAGGAGACGA 57.350 39.130 0.00 0.00 41.48 4.20
3162 13903 5.848833 ATCGTAAAAAGGTAGGAGACGAT 57.151 39.130 0.00 0.00 42.07 3.73
3163 13904 4.990257 TCGTAAAAAGGTAGGAGACGATG 58.010 43.478 0.00 0.00 33.33 3.84
3164 13905 4.110482 CGTAAAAAGGTAGGAGACGATGG 58.890 47.826 0.00 0.00 0.00 3.51
3165 13906 2.693267 AAAAGGTAGGAGACGATGGC 57.307 50.000 0.00 0.00 0.00 4.40
3166 13907 1.867363 AAAGGTAGGAGACGATGGCT 58.133 50.000 0.00 0.00 0.00 4.75
3167 13908 1.115467 AAGGTAGGAGACGATGGCTG 58.885 55.000 0.00 0.00 0.00 4.85
3168 13909 0.757188 AGGTAGGAGACGATGGCTGG 60.757 60.000 0.00 0.00 0.00 4.85
3169 13910 1.068250 GTAGGAGACGATGGCTGGC 59.932 63.158 0.00 0.00 0.00 4.85
3170 13911 1.381191 TAGGAGACGATGGCTGGCA 60.381 57.895 6.31 6.31 0.00 4.92
3171 13912 0.975556 TAGGAGACGATGGCTGGCAA 60.976 55.000 8.35 0.00 0.00 4.52
3172 13913 1.153086 GGAGACGATGGCTGGCAAT 60.153 57.895 8.35 0.00 0.00 3.56
3173 13914 1.162800 GGAGACGATGGCTGGCAATC 61.163 60.000 8.35 6.69 0.00 2.67
3174 13915 0.462581 GAGACGATGGCTGGCAATCA 60.463 55.000 8.35 0.00 0.00 2.57
3175 13916 0.745845 AGACGATGGCTGGCAATCAC 60.746 55.000 8.35 1.04 0.00 3.06
3176 13917 1.002257 ACGATGGCTGGCAATCACA 60.002 52.632 8.35 0.00 0.00 3.58
3177 13918 1.028330 ACGATGGCTGGCAATCACAG 61.028 55.000 8.35 0.00 38.95 3.66
3178 13919 1.721664 CGATGGCTGGCAATCACAGG 61.722 60.000 8.35 0.00 36.48 4.00
3179 13920 0.394762 GATGGCTGGCAATCACAGGA 60.395 55.000 8.35 0.00 36.48 3.86
3180 13921 0.682209 ATGGCTGGCAATCACAGGAC 60.682 55.000 8.35 0.00 36.48 3.85
3181 13922 1.001641 GGCTGGCAATCACAGGACT 60.002 57.895 0.00 0.00 36.48 3.85
3182 13923 1.310933 GGCTGGCAATCACAGGACTG 61.311 60.000 0.00 0.00 36.48 3.51
3183 13924 1.310933 GCTGGCAATCACAGGACTGG 61.311 60.000 4.14 0.00 36.48 4.00
3184 13925 1.303561 TGGCAATCACAGGACTGGC 60.304 57.895 4.14 0.00 45.01 4.85
3185 13926 1.001641 GGCAATCACAGGACTGGCT 60.002 57.895 4.14 0.00 41.95 4.75
3186 13927 0.253044 GGCAATCACAGGACTGGCTA 59.747 55.000 4.14 0.00 41.95 3.93
3187 13928 1.373570 GCAATCACAGGACTGGCTAC 58.626 55.000 4.14 0.00 34.19 3.58
3188 13929 1.065854 GCAATCACAGGACTGGCTACT 60.066 52.381 4.14 0.00 34.19 2.57
3189 13930 2.616510 GCAATCACAGGACTGGCTACTT 60.617 50.000 4.14 0.00 34.19 2.24
3190 13931 3.005554 CAATCACAGGACTGGCTACTTG 58.994 50.000 4.14 0.00 34.19 3.16
3191 13932 1.717032 TCACAGGACTGGCTACTTGT 58.283 50.000 4.14 0.00 34.19 3.16
3192 13933 1.344438 TCACAGGACTGGCTACTTGTG 59.656 52.381 4.14 12.17 42.58 3.33
3193 13934 0.035458 ACAGGACTGGCTACTTGTGC 59.965 55.000 4.14 0.00 34.19 4.57
3194 13935 1.016130 CAGGACTGGCTACTTGTGCG 61.016 60.000 0.00 0.00 0.00 5.34
3195 13936 2.391389 GGACTGGCTACTTGTGCGC 61.391 63.158 0.00 0.00 0.00 6.09
3196 13937 1.667830 GACTGGCTACTTGTGCGCA 60.668 57.895 5.66 5.66 0.00 6.09
3197 13938 1.901650 GACTGGCTACTTGTGCGCAC 61.902 60.000 33.11 33.11 0.00 5.34
3198 13939 1.669115 CTGGCTACTTGTGCGCACT 60.669 57.895 37.59 22.54 0.00 4.40
3199 13940 1.630244 CTGGCTACTTGTGCGCACTC 61.630 60.000 37.59 16.60 0.00 3.51
3200 13941 2.730672 GGCTACTTGTGCGCACTCG 61.731 63.158 37.59 29.14 39.07 4.18
3210 13951 2.798689 CGCACTCGCTAGTAGCCA 59.201 61.111 16.51 2.58 38.18 4.75
3211 13952 1.586564 CGCACTCGCTAGTAGCCAC 60.587 63.158 16.51 1.09 38.18 5.01
3212 13953 1.810532 GCACTCGCTAGTAGCCACT 59.189 57.895 16.51 0.00 38.18 4.00
3213 13954 1.022735 GCACTCGCTAGTAGCCACTA 58.977 55.000 16.51 0.00 38.18 2.74
3214 13955 1.268640 GCACTCGCTAGTAGCCACTAC 60.269 57.143 16.51 0.27 38.18 2.73
3215 13956 1.003759 CACTCGCTAGTAGCCACTACG 60.004 57.143 16.51 1.46 41.37 3.51
3216 13957 1.134580 ACTCGCTAGTAGCCACTACGA 60.135 52.381 16.51 13.08 41.37 3.43
3217 13958 2.144730 CTCGCTAGTAGCCACTACGAT 58.855 52.381 16.51 0.00 41.37 3.73
3218 13959 1.871676 TCGCTAGTAGCCACTACGATG 59.128 52.381 16.51 0.00 41.37 3.84
3219 13960 1.069159 CGCTAGTAGCCACTACGATGG 60.069 57.143 16.51 0.00 41.37 3.51
3220 13961 2.228059 GCTAGTAGCCACTACGATGGA 58.772 52.381 11.33 0.00 43.02 3.41
3221 13962 2.621998 GCTAGTAGCCACTACGATGGAA 59.378 50.000 11.33 0.00 43.02 3.53
3222 13963 3.304794 GCTAGTAGCCACTACGATGGAAG 60.305 52.174 11.33 0.71 43.02 3.46
3223 13964 3.014304 AGTAGCCACTACGATGGAAGA 57.986 47.619 8.93 0.00 43.02 2.87
3224 13965 2.952978 AGTAGCCACTACGATGGAAGAG 59.047 50.000 8.93 0.00 43.02 2.85
3225 13966 0.461961 AGCCACTACGATGGAAGAGC 59.538 55.000 8.93 0.00 43.02 4.09
3226 13967 0.461961 GCCACTACGATGGAAGAGCT 59.538 55.000 8.93 0.00 43.02 4.09
3227 13968 1.537135 GCCACTACGATGGAAGAGCTC 60.537 57.143 5.27 5.27 43.02 4.09
3228 13969 1.268794 CCACTACGATGGAAGAGCTCG 60.269 57.143 8.37 0.00 43.02 5.03
3229 13970 1.025812 ACTACGATGGAAGAGCTCGG 58.974 55.000 8.37 0.00 36.74 4.63
3230 13971 1.025812 CTACGATGGAAGAGCTCGGT 58.974 55.000 8.37 0.00 36.74 4.69
3231 13972 1.405821 CTACGATGGAAGAGCTCGGTT 59.594 52.381 8.37 0.00 36.74 4.44
3232 13973 0.108615 ACGATGGAAGAGCTCGGTTG 60.109 55.000 8.37 0.77 36.74 3.77
3233 13974 0.173481 CGATGGAAGAGCTCGGTTGA 59.827 55.000 8.37 0.00 0.00 3.18
3234 13975 1.646189 GATGGAAGAGCTCGGTTGAC 58.354 55.000 8.37 0.00 0.00 3.18
3235 13976 0.250513 ATGGAAGAGCTCGGTTGACC 59.749 55.000 8.37 7.40 0.00 4.02
3236 13977 1.118965 TGGAAGAGCTCGGTTGACCA 61.119 55.000 8.37 9.80 35.14 4.02
3237 13978 0.034896 GGAAGAGCTCGGTTGACCAA 59.965 55.000 8.37 0.00 35.14 3.67
3238 13979 1.339151 GGAAGAGCTCGGTTGACCAAT 60.339 52.381 8.37 0.00 35.14 3.16
3239 13980 1.734465 GAAGAGCTCGGTTGACCAATG 59.266 52.381 8.37 0.00 35.14 2.82
3240 13981 0.687354 AGAGCTCGGTTGACCAATGT 59.313 50.000 8.37 0.00 35.14 2.71
3241 13982 1.899814 AGAGCTCGGTTGACCAATGTA 59.100 47.619 8.37 0.00 35.14 2.29
3242 13983 2.000447 GAGCTCGGTTGACCAATGTAC 59.000 52.381 0.00 0.00 35.14 2.90
3243 13984 1.346395 AGCTCGGTTGACCAATGTACA 59.654 47.619 0.00 0.00 35.14 2.90
3244 13985 1.732259 GCTCGGTTGACCAATGTACAG 59.268 52.381 0.33 0.00 35.14 2.74
3245 13986 1.732259 CTCGGTTGACCAATGTACAGC 59.268 52.381 0.33 0.00 35.14 4.40
3246 13987 0.442310 CGGTTGACCAATGTACAGCG 59.558 55.000 0.33 0.00 35.14 5.18
3247 13988 0.802494 GGTTGACCAATGTACAGCGG 59.198 55.000 10.98 10.98 35.64 5.52
3248 13989 1.609580 GGTTGACCAATGTACAGCGGA 60.610 52.381 17.87 0.00 35.64 5.54
3249 13990 2.147958 GTTGACCAATGTACAGCGGAA 58.852 47.619 17.87 5.24 0.00 4.30
3250 13991 1.803334 TGACCAATGTACAGCGGAAC 58.197 50.000 17.87 12.02 0.00 3.62
3251 13992 1.070914 TGACCAATGTACAGCGGAACA 59.929 47.619 17.87 13.90 0.00 3.18
3252 13993 1.463444 GACCAATGTACAGCGGAACAC 59.537 52.381 17.87 5.16 0.00 3.32
3253 13994 1.071699 ACCAATGTACAGCGGAACACT 59.928 47.619 17.87 0.00 0.00 3.55
3254 13995 2.300723 ACCAATGTACAGCGGAACACTA 59.699 45.455 17.87 0.00 0.00 2.74
3255 13996 3.244284 ACCAATGTACAGCGGAACACTAA 60.244 43.478 17.87 0.00 0.00 2.24
3256 13997 3.749088 CCAATGTACAGCGGAACACTAAA 59.251 43.478 7.44 0.00 0.00 1.85
3257 13998 4.214545 CCAATGTACAGCGGAACACTAAAA 59.785 41.667 7.44 0.00 0.00 1.52
3258 13999 5.278071 CCAATGTACAGCGGAACACTAAAAA 60.278 40.000 7.44 0.00 0.00 1.94
3259 14000 5.607119 ATGTACAGCGGAACACTAAAAAG 57.393 39.130 0.33 0.00 0.00 2.27
3260 14001 4.695396 TGTACAGCGGAACACTAAAAAGA 58.305 39.130 0.00 0.00 0.00 2.52
3261 14002 5.117584 TGTACAGCGGAACACTAAAAAGAA 58.882 37.500 0.00 0.00 0.00 2.52
3262 14003 4.547406 ACAGCGGAACACTAAAAAGAAC 57.453 40.909 0.00 0.00 0.00 3.01
3263 14004 4.196971 ACAGCGGAACACTAAAAAGAACT 58.803 39.130 0.00 0.00 0.00 3.01
3264 14005 5.362263 ACAGCGGAACACTAAAAAGAACTA 58.638 37.500 0.00 0.00 0.00 2.24
3265 14006 5.818857 ACAGCGGAACACTAAAAAGAACTAA 59.181 36.000 0.00 0.00 0.00 2.24
3266 14007 6.316890 ACAGCGGAACACTAAAAAGAACTAAA 59.683 34.615 0.00 0.00 0.00 1.85
3267 14008 6.851330 CAGCGGAACACTAAAAAGAACTAAAG 59.149 38.462 0.00 0.00 0.00 1.85
3268 14009 6.764560 AGCGGAACACTAAAAAGAACTAAAGA 59.235 34.615 0.00 0.00 0.00 2.52
3269 14010 7.281549 AGCGGAACACTAAAAAGAACTAAAGAA 59.718 33.333 0.00 0.00 0.00 2.52
3270 14011 7.911727 GCGGAACACTAAAAAGAACTAAAGAAA 59.088 33.333 0.00 0.00 0.00 2.52
3271 14012 9.777575 CGGAACACTAAAAAGAACTAAAGAAAA 57.222 29.630 0.00 0.00 0.00 2.29
3371 14112 6.581171 TTTTTGACCAAGGCAAACAATTTT 57.419 29.167 0.00 0.00 35.20 1.82
3372 14113 7.687941 TTTTTGACCAAGGCAAACAATTTTA 57.312 28.000 0.00 0.00 35.20 1.52
3373 14114 7.872113 TTTTGACCAAGGCAAACAATTTTAT 57.128 28.000 0.00 0.00 35.20 1.40
3374 14115 6.857777 TTGACCAAGGCAAACAATTTTATG 57.142 33.333 0.00 0.00 0.00 1.90
3375 14116 6.166984 TGACCAAGGCAAACAATTTTATGA 57.833 33.333 0.00 0.00 0.00 2.15
3376 14117 6.767456 TGACCAAGGCAAACAATTTTATGAT 58.233 32.000 0.00 0.00 0.00 2.45
3377 14118 7.901029 TGACCAAGGCAAACAATTTTATGATA 58.099 30.769 0.00 0.00 0.00 2.15
3378 14119 8.538701 TGACCAAGGCAAACAATTTTATGATAT 58.461 29.630 0.00 0.00 0.00 1.63
3379 14120 9.382275 GACCAAGGCAAACAATTTTATGATATT 57.618 29.630 0.00 0.00 0.00 1.28
3380 14121 9.165035 ACCAAGGCAAACAATTTTATGATATTG 57.835 29.630 0.13 0.13 37.67 1.90
3381 14122 8.124199 CCAAGGCAAACAATTTTATGATATTGC 58.876 33.333 0.00 0.00 37.28 3.56
3382 14123 7.467557 AGGCAAACAATTTTATGATATTGCG 57.532 32.000 0.00 0.00 38.03 4.85
3383 14124 7.264221 AGGCAAACAATTTTATGATATTGCGA 58.736 30.769 0.00 0.00 38.03 5.10
3384 14125 7.763528 AGGCAAACAATTTTATGATATTGCGAA 59.236 29.630 0.00 0.00 38.03 4.70
3385 14126 7.845622 GGCAAACAATTTTATGATATTGCGAAC 59.154 33.333 0.00 0.00 38.03 3.95
3386 14127 8.379161 GCAAACAATTTTATGATATTGCGAACA 58.621 29.630 1.39 0.00 35.63 3.18
3399 14140 9.515020 TGATATTGCGAACAAATTTAGGATTTC 57.485 29.630 0.00 0.00 39.77 2.17
3400 14141 8.871686 ATATTGCGAACAAATTTAGGATTTCC 57.128 30.769 0.00 0.00 39.77 3.13
3401 14142 5.713792 TGCGAACAAATTTAGGATTTCCA 57.286 34.783 0.00 0.00 38.89 3.53
3402 14143 6.090483 TGCGAACAAATTTAGGATTTCCAA 57.910 33.333 0.00 0.00 38.89 3.53
3403 14144 6.516718 TGCGAACAAATTTAGGATTTCCAAA 58.483 32.000 0.00 0.00 38.89 3.28
3404 14145 6.986817 TGCGAACAAATTTAGGATTTCCAAAA 59.013 30.769 0.00 0.00 38.89 2.44
3405 14146 7.042389 TGCGAACAAATTTAGGATTTCCAAAAC 60.042 33.333 0.00 0.00 38.89 2.43
3406 14147 7.498225 CGAACAAATTTAGGATTTCCAAAACG 58.502 34.615 0.00 0.00 38.89 3.60
3407 14148 6.779115 ACAAATTTAGGATTTCCAAAACGC 57.221 33.333 0.00 0.00 38.89 4.84
3408 14149 6.521162 ACAAATTTAGGATTTCCAAAACGCT 58.479 32.000 0.00 0.00 38.89 5.07
3409 14150 6.989759 ACAAATTTAGGATTTCCAAAACGCTT 59.010 30.769 0.00 0.00 38.89 4.68
3410 14151 7.497579 ACAAATTTAGGATTTCCAAAACGCTTT 59.502 29.630 0.00 0.00 38.89 3.51
3411 14152 8.341903 CAAATTTAGGATTTCCAAAACGCTTTT 58.658 29.630 0.00 0.00 38.89 2.27
3412 14153 9.549078 AAATTTAGGATTTCCAAAACGCTTTTA 57.451 25.926 0.00 0.00 38.89 1.52
3413 14154 9.549078 AATTTAGGATTTCCAAAACGCTTTTAA 57.451 25.926 0.00 0.00 38.89 1.52
3414 14155 8.943909 TTTAGGATTTCCAAAACGCTTTTAAA 57.056 26.923 0.00 0.00 38.89 1.52
3415 14156 8.943909 TTAGGATTTCCAAAACGCTTTTAAAA 57.056 26.923 0.00 0.00 38.89 1.52
3416 14157 7.851387 AGGATTTCCAAAACGCTTTTAAAAA 57.149 28.000 1.66 0.00 38.89 1.94
3480 14221 8.925161 ATGAGAACAAATTTTGAAACGAAGAA 57.075 26.923 15.81 0.00 0.00 2.52
3481 14222 8.168681 TGAGAACAAATTTTGAAACGAAGAAC 57.831 30.769 15.81 0.00 0.00 3.01
3482 14223 7.810282 TGAGAACAAATTTTGAAACGAAGAACA 59.190 29.630 15.81 0.61 0.00 3.18
3483 14224 8.527567 AGAACAAATTTTGAAACGAAGAACAA 57.472 26.923 15.81 0.00 0.00 2.83
3484 14225 9.150348 AGAACAAATTTTGAAACGAAGAACAAT 57.850 25.926 15.81 0.00 0.00 2.71
3485 14226 9.753669 GAACAAATTTTGAAACGAAGAACAATT 57.246 25.926 15.81 0.00 0.00 2.32
3487 14228 9.753669 ACAAATTTTGAAACGAAGAACAATTTC 57.246 25.926 15.81 0.00 0.00 2.17
3488 14229 9.752274 CAAATTTTGAAACGAAGAACAATTTCA 57.248 25.926 2.88 0.00 38.85 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.308371 TGAATTTTCTTCCCGACAAAGTAC 57.692 37.500 0.00 0.00 0.00 2.73
58 59 3.242316 GCTGGGAATTTCGACGTACATTC 60.242 47.826 0.00 1.73 0.00 2.67
94 95 8.718102 TCTACTTGAAGAATATTTAGCACCAC 57.282 34.615 0.00 0.00 0.00 4.16
141 142 2.919666 AAATGCGCACACATCCTTAC 57.080 45.000 14.90 0.00 0.00 2.34
204 446 8.073467 TGGACTTTTAAAACTTCAAGTGGATT 57.927 30.769 0.00 0.00 29.43 3.01
205 447 7.654022 TGGACTTTTAAAACTTCAAGTGGAT 57.346 32.000 0.00 0.00 29.43 3.41
347 3338 7.259161 TGTAAGACGTTTTGGCAGTTTAAATT 58.741 30.769 0.83 0.00 0.00 1.82
363 3354 6.756221 ACCTCTGTTTCTAAATGTAAGACGT 58.244 36.000 0.00 0.00 0.00 4.34
382 3373 6.329460 GGGGACATAAAGTTATTCCTACCTCT 59.671 42.308 9.89 0.00 0.00 3.69
389 3380 7.560262 AGCTTTAAGGGGACATAAAGTTATTCC 59.440 37.037 7.02 0.00 39.68 3.01
515 5278 4.969359 AGGCCTCTAATACTTTAAGCAGGA 59.031 41.667 0.00 0.00 0.00 3.86
553 5316 2.960384 TCGTTGAGACTAGTTGGTTCCA 59.040 45.455 0.00 0.00 0.00 3.53
562 5325 4.576873 TCTGCCTATCTTCGTTGAGACTAG 59.423 45.833 0.00 0.00 0.00 2.57
613 5376 2.363018 TCGGGTCTGCTGGAGGAG 60.363 66.667 0.00 0.00 34.56 3.69
620 5383 2.522198 ATCACCTCCTCGGGTCTGCT 62.522 60.000 0.00 0.00 37.52 4.24
701 5491 7.035612 GCCACAAGAAGAAAGAAAGAAAGAAA 58.964 34.615 0.00 0.00 0.00 2.52
755 5549 4.927049 AGGTGTTAGTAGCAGTACCAGTA 58.073 43.478 0.00 0.00 0.00 2.74
867 5662 2.823154 GGGCTTGGCTTGTGTTTGTATA 59.177 45.455 0.00 0.00 0.00 1.47
929 5729 5.731957 TGCAATGACCACTGTTACTACTA 57.268 39.130 0.00 0.00 0.00 1.82
930 5730 4.617253 TGCAATGACCACTGTTACTACT 57.383 40.909 0.00 0.00 0.00 2.57
931 5731 5.163754 GGATTGCAATGACCACTGTTACTAC 60.164 44.000 18.59 0.00 0.00 2.73
942 5742 3.356290 ACTAAGGTGGATTGCAATGACC 58.644 45.455 18.59 20.80 0.00 4.02
1117 5921 1.276421 CTTCTTCACATCCTCCACCGT 59.724 52.381 0.00 0.00 0.00 4.83
1165 5969 3.861113 GCACCGTTTGTATGAATCTCGTA 59.139 43.478 0.00 0.00 0.00 3.43
1208 6015 4.344865 GGCTGGAACCGCCCTTGA 62.345 66.667 12.97 0.00 41.73 3.02
1240 6048 3.961408 ACTACTTACTACCTCTGCCCATG 59.039 47.826 0.00 0.00 0.00 3.66
1689 6726 1.142060 ACGGTCAGTCAAATGGGTGAA 59.858 47.619 0.00 0.00 0.00 3.18
1694 6731 1.338674 TGGCTACGGTCAGTCAAATGG 60.339 52.381 0.00 0.00 0.00 3.16
1700 6737 1.204941 AGTGATTGGCTACGGTCAGTC 59.795 52.381 0.00 0.00 34.92 3.51
1856 10026 6.440647 TGAGGTTAGTTATCAGATGGACTGTT 59.559 38.462 10.16 0.00 45.86 3.16
1963 10148 7.037586 TGTTATTCTGGACAAATTAGTCTCCCT 60.038 37.037 0.00 0.00 38.57 4.20
2068 10256 1.195674 GTCGAAAGGACAGCAAGCTTC 59.804 52.381 0.00 0.00 45.36 3.86
2238 12628 1.003696 GAGGGTCTTTCCAGTGAAGGG 59.996 57.143 0.00 0.00 38.11 3.95
2260 12650 2.808543 GAGATGCCGACAGAAACAAAGT 59.191 45.455 0.00 0.00 0.00 2.66
2292 12700 5.527214 CAGTGTAACAAGTCTGAATGTTCCA 59.473 40.000 11.87 6.19 41.43 3.53
2338 13020 5.299148 TGGCTGAAAATGAAATCCACAAAG 58.701 37.500 0.00 0.00 0.00 2.77
2390 13072 5.598416 AGGGAACTGAAAAACTGAAAAGG 57.402 39.130 0.00 0.00 41.13 3.11
2441 13124 5.938710 GGAAAAAGGAGAGAATAAACCGAGT 59.061 40.000 0.00 0.00 0.00 4.18
2542 13244 0.106268 TGGCTTCAGGCTGGAAAACA 60.106 50.000 15.73 1.99 41.69 2.83
2543 13245 0.600057 CTGGCTTCAGGCTGGAAAAC 59.400 55.000 15.73 0.00 41.69 2.43
2544 13246 0.185901 ACTGGCTTCAGGCTGGAAAA 59.814 50.000 15.73 0.35 42.60 2.29
2545 13247 1.064003 TACTGGCTTCAGGCTGGAAA 58.936 50.000 15.73 1.15 42.60 3.13
2553 13255 3.636300 AGATAGAGCAGTACTGGCTTCAG 59.364 47.826 23.95 0.00 42.78 3.02
2558 13260 3.886505 AGTGTAGATAGAGCAGTACTGGC 59.113 47.826 23.95 15.67 0.00 4.85
2566 13268 8.648693 TGTGTATCTAGTAGTGTAGATAGAGCA 58.351 37.037 0.00 0.96 40.92 4.26
2567 13269 9.661563 ATGTGTATCTAGTAGTGTAGATAGAGC 57.338 37.037 0.00 0.00 40.92 4.09
2611 13324 1.615883 AGCTAGCTACATGACCGGATG 59.384 52.381 17.69 4.70 0.00 3.51
2671 13391 9.667107 TTGATTATGTCTCGGACTTTATTCTTT 57.333 29.630 5.77 0.00 33.15 2.52
2788 13511 2.188829 CGATACCTCCGGCGGTACA 61.189 63.158 25.28 7.05 42.01 2.90
2835 13573 1.587054 GACAGGGAGACAGACCACG 59.413 63.158 0.00 0.00 0.00 4.94
2875 13616 9.280174 GACCGGAATTTCCATTAGACAAATATA 57.720 33.333 9.46 0.00 35.91 0.86
2876 13617 7.998964 AGACCGGAATTTCCATTAGACAAATAT 59.001 33.333 9.46 0.00 35.91 1.28
2958 13699 0.874607 GAATTCCCTATGACGCGCGT 60.875 55.000 38.52 38.52 0.00 6.01
3012 13753 9.144298 CCCAAGGTTTATGTAGATCTACTCTAA 57.856 37.037 28.53 22.26 38.20 2.10
3044 13785 7.260603 GTCCATTCTGGTTTTCTTGGAATATG 58.739 38.462 0.00 0.00 39.03 1.78
3045 13786 6.095440 CGTCCATTCTGGTTTTCTTGGAATAT 59.905 38.462 0.00 0.00 39.03 1.28
3046 13787 5.414454 CGTCCATTCTGGTTTTCTTGGAATA 59.586 40.000 0.00 0.00 39.03 1.75
3053 13794 1.534729 GCCGTCCATTCTGGTTTTCT 58.465 50.000 0.00 0.00 39.03 2.52
3099 13840 2.639327 GCACTGCAATGGGTCCACC 61.639 63.158 0.00 0.00 40.81 4.61
3100 13841 2.964978 GCACTGCAATGGGTCCAC 59.035 61.111 0.00 0.00 0.00 4.02
3101 13842 2.672651 CGCACTGCAATGGGTCCA 60.673 61.111 3.78 0.00 0.00 4.02
3102 13843 4.120331 GCGCACTGCAATGGGTCC 62.120 66.667 13.92 0.00 45.45 4.46
3112 13853 2.100216 GGTATTTGCGGCGCACTG 59.900 61.111 36.57 0.00 38.71 3.66
3113 13854 2.359354 TGGTATTTGCGGCGCACT 60.359 55.556 36.57 26.18 38.71 4.40
3114 13855 2.100216 CTGGTATTTGCGGCGCAC 59.900 61.111 36.57 22.84 38.71 5.34
3115 13856 3.130819 CCTGGTATTTGCGGCGCA 61.131 61.111 33.07 33.07 36.47 6.09
3116 13857 3.887868 CCCTGGTATTTGCGGCGC 61.888 66.667 27.44 27.44 0.00 6.53
3117 13858 0.745128 TTACCCTGGTATTTGCGGCG 60.745 55.000 0.51 0.51 0.00 6.46
3118 13859 1.465794 TTTACCCTGGTATTTGCGGC 58.534 50.000 0.00 0.00 0.00 6.53
3136 13877 6.930722 TCGTCTCCTACCTTTTTACGATTTTT 59.069 34.615 0.00 0.00 33.44 1.94
3137 13878 6.458210 TCGTCTCCTACCTTTTTACGATTTT 58.542 36.000 0.00 0.00 33.44 1.82
3138 13879 6.029346 TCGTCTCCTACCTTTTTACGATTT 57.971 37.500 0.00 0.00 33.44 2.17
3139 13880 5.649782 TCGTCTCCTACCTTTTTACGATT 57.350 39.130 0.00 0.00 33.44 3.34
3140 13881 5.451520 CCATCGTCTCCTACCTTTTTACGAT 60.452 44.000 0.00 0.00 46.15 3.73
3141 13882 4.142315 CCATCGTCTCCTACCTTTTTACGA 60.142 45.833 0.00 0.00 41.45 3.43
3142 13883 4.110482 CCATCGTCTCCTACCTTTTTACG 58.890 47.826 0.00 0.00 0.00 3.18
3143 13884 3.869832 GCCATCGTCTCCTACCTTTTTAC 59.130 47.826 0.00 0.00 0.00 2.01
3144 13885 3.773119 AGCCATCGTCTCCTACCTTTTTA 59.227 43.478 0.00 0.00 0.00 1.52
3145 13886 2.572104 AGCCATCGTCTCCTACCTTTTT 59.428 45.455 0.00 0.00 0.00 1.94
3146 13887 2.093447 CAGCCATCGTCTCCTACCTTTT 60.093 50.000 0.00 0.00 0.00 2.27
3147 13888 1.482593 CAGCCATCGTCTCCTACCTTT 59.517 52.381 0.00 0.00 0.00 3.11
3148 13889 1.115467 CAGCCATCGTCTCCTACCTT 58.885 55.000 0.00 0.00 0.00 3.50
3149 13890 0.757188 CCAGCCATCGTCTCCTACCT 60.757 60.000 0.00 0.00 0.00 3.08
3150 13891 1.742768 CCAGCCATCGTCTCCTACC 59.257 63.158 0.00 0.00 0.00 3.18
3151 13892 1.068250 GCCAGCCATCGTCTCCTAC 59.932 63.158 0.00 0.00 0.00 3.18
3152 13893 0.975556 TTGCCAGCCATCGTCTCCTA 60.976 55.000 0.00 0.00 0.00 2.94
3153 13894 1.630126 ATTGCCAGCCATCGTCTCCT 61.630 55.000 0.00 0.00 0.00 3.69
3154 13895 1.153086 ATTGCCAGCCATCGTCTCC 60.153 57.895 0.00 0.00 0.00 3.71
3155 13896 0.462581 TGATTGCCAGCCATCGTCTC 60.463 55.000 0.00 0.00 0.00 3.36
3156 13897 0.745845 GTGATTGCCAGCCATCGTCT 60.746 55.000 0.00 0.00 0.00 4.18
3157 13898 1.026182 TGTGATTGCCAGCCATCGTC 61.026 55.000 0.00 0.00 0.00 4.20
3158 13899 1.002257 TGTGATTGCCAGCCATCGT 60.002 52.632 0.00 0.00 0.00 3.73
3159 13900 1.721664 CCTGTGATTGCCAGCCATCG 61.722 60.000 0.00 0.00 0.00 3.84
3160 13901 0.394762 TCCTGTGATTGCCAGCCATC 60.395 55.000 0.00 0.00 0.00 3.51
3161 13902 0.682209 GTCCTGTGATTGCCAGCCAT 60.682 55.000 0.00 0.00 0.00 4.40
3162 13903 1.303561 GTCCTGTGATTGCCAGCCA 60.304 57.895 0.00 0.00 0.00 4.75
3163 13904 1.001641 AGTCCTGTGATTGCCAGCC 60.002 57.895 0.00 0.00 0.00 4.85
3164 13905 1.310933 CCAGTCCTGTGATTGCCAGC 61.311 60.000 0.00 0.00 0.00 4.85
3165 13906 1.310933 GCCAGTCCTGTGATTGCCAG 61.311 60.000 0.00 0.00 0.00 4.85
3166 13907 1.303561 GCCAGTCCTGTGATTGCCA 60.304 57.895 0.00 0.00 0.00 4.92
3167 13908 0.253044 TAGCCAGTCCTGTGATTGCC 59.747 55.000 0.00 0.00 0.00 4.52
3168 13909 1.065854 AGTAGCCAGTCCTGTGATTGC 60.066 52.381 0.00 0.00 0.00 3.56
3169 13910 3.005554 CAAGTAGCCAGTCCTGTGATTG 58.994 50.000 0.00 0.00 0.00 2.67
3170 13911 2.639839 ACAAGTAGCCAGTCCTGTGATT 59.360 45.455 0.00 0.00 0.00 2.57
3171 13912 2.027745 CACAAGTAGCCAGTCCTGTGAT 60.028 50.000 0.00 0.00 0.00 3.06
3172 13913 1.344438 CACAAGTAGCCAGTCCTGTGA 59.656 52.381 0.00 0.00 0.00 3.58
3173 13914 1.800805 CACAAGTAGCCAGTCCTGTG 58.199 55.000 0.00 0.00 0.00 3.66
3174 13915 0.035458 GCACAAGTAGCCAGTCCTGT 59.965 55.000 0.00 0.00 0.00 4.00
3175 13916 1.016130 CGCACAAGTAGCCAGTCCTG 61.016 60.000 0.00 0.00 0.00 3.86
3176 13917 1.293498 CGCACAAGTAGCCAGTCCT 59.707 57.895 0.00 0.00 0.00 3.85
3177 13918 2.391389 GCGCACAAGTAGCCAGTCC 61.391 63.158 0.30 0.00 0.00 3.85
3178 13919 1.667830 TGCGCACAAGTAGCCAGTC 60.668 57.895 5.66 0.00 0.00 3.51
3179 13920 1.961277 GTGCGCACAAGTAGCCAGT 60.961 57.895 34.52 0.00 0.00 4.00
3180 13921 1.630244 GAGTGCGCACAAGTAGCCAG 61.630 60.000 39.21 0.00 0.00 4.85
3181 13922 1.667830 GAGTGCGCACAAGTAGCCA 60.668 57.895 39.21 0.00 0.00 4.75
3182 13923 2.730672 CGAGTGCGCACAAGTAGCC 61.731 63.158 39.21 18.22 0.00 3.93
3183 13924 2.772189 CGAGTGCGCACAAGTAGC 59.228 61.111 39.21 20.11 0.00 3.58
3193 13934 2.670761 TAGTGGCTACTAGCGAGTGCG 61.671 57.143 10.02 1.94 43.62 5.34
3194 13935 1.022735 TAGTGGCTACTAGCGAGTGC 58.977 55.000 10.02 10.68 43.62 4.40
3195 13936 1.003759 CGTAGTGGCTACTAGCGAGTG 60.004 57.143 19.70 1.20 43.62 3.51
3196 13937 1.134580 TCGTAGTGGCTACTAGCGAGT 60.135 52.381 21.63 4.47 43.62 4.18
3197 13938 1.579698 TCGTAGTGGCTACTAGCGAG 58.420 55.000 21.63 11.12 43.62 5.03
3198 13939 1.871676 CATCGTAGTGGCTACTAGCGA 59.128 52.381 24.96 24.96 43.62 4.93
3199 13940 1.069159 CCATCGTAGTGGCTACTAGCG 60.069 57.143 10.60 15.88 43.62 4.26
3200 13941 2.228059 TCCATCGTAGTGGCTACTAGC 58.772 52.381 10.60 5.14 39.96 3.42
3201 13942 4.135306 TCTTCCATCGTAGTGGCTACTAG 58.865 47.826 10.60 5.40 39.96 2.57
3202 13943 4.135306 CTCTTCCATCGTAGTGGCTACTA 58.865 47.826 5.74 5.74 39.19 1.82
3203 13944 2.952978 CTCTTCCATCGTAGTGGCTACT 59.047 50.000 8.18 8.18 39.19 2.57
3204 13945 2.544069 GCTCTTCCATCGTAGTGGCTAC 60.544 54.545 0.00 0.00 39.19 3.58
3205 13946 1.681793 GCTCTTCCATCGTAGTGGCTA 59.318 52.381 0.38 0.00 39.19 3.93
3206 13947 0.461961 GCTCTTCCATCGTAGTGGCT 59.538 55.000 0.38 0.00 39.19 4.75
3207 13948 0.461961 AGCTCTTCCATCGTAGTGGC 59.538 55.000 0.00 0.00 39.19 5.01
3208 13949 1.268794 CGAGCTCTTCCATCGTAGTGG 60.269 57.143 12.85 0.00 40.76 4.00
3209 13950 1.268794 CCGAGCTCTTCCATCGTAGTG 60.269 57.143 12.85 0.00 34.71 2.74
3210 13951 1.025812 CCGAGCTCTTCCATCGTAGT 58.974 55.000 12.85 0.00 34.71 2.73
3211 13952 1.025812 ACCGAGCTCTTCCATCGTAG 58.974 55.000 12.85 0.00 34.71 3.51
3212 13953 1.134367 CAACCGAGCTCTTCCATCGTA 59.866 52.381 12.85 0.00 34.71 3.43
3213 13954 0.108615 CAACCGAGCTCTTCCATCGT 60.109 55.000 12.85 0.00 34.71 3.73
3214 13955 0.173481 TCAACCGAGCTCTTCCATCG 59.827 55.000 12.85 0.00 36.24 3.84
3215 13956 1.646189 GTCAACCGAGCTCTTCCATC 58.354 55.000 12.85 0.00 0.00 3.51
3216 13957 0.250513 GGTCAACCGAGCTCTTCCAT 59.749 55.000 12.85 0.00 36.68 3.41
3217 13958 1.118965 TGGTCAACCGAGCTCTTCCA 61.119 55.000 12.85 8.02 40.44 3.53
3218 13959 0.034896 TTGGTCAACCGAGCTCTTCC 59.965 55.000 12.85 5.60 40.44 3.46
3219 13960 1.734465 CATTGGTCAACCGAGCTCTTC 59.266 52.381 12.85 0.00 40.44 2.87
3220 13961 1.072331 ACATTGGTCAACCGAGCTCTT 59.928 47.619 12.85 0.00 40.44 2.85
3221 13962 0.687354 ACATTGGTCAACCGAGCTCT 59.313 50.000 12.85 0.00 40.44 4.09
3222 13963 2.000447 GTACATTGGTCAACCGAGCTC 59.000 52.381 2.73 2.73 40.44 4.09
3223 13964 1.346395 TGTACATTGGTCAACCGAGCT 59.654 47.619 0.00 0.00 40.44 4.09
3224 13965 1.732259 CTGTACATTGGTCAACCGAGC 59.268 52.381 0.00 0.00 39.43 5.03
3225 13966 1.732259 GCTGTACATTGGTCAACCGAG 59.268 52.381 0.00 0.00 39.43 4.63
3226 13967 1.803334 GCTGTACATTGGTCAACCGA 58.197 50.000 0.00 0.00 39.43 4.69
3227 13968 0.442310 CGCTGTACATTGGTCAACCG 59.558 55.000 0.00 0.00 39.43 4.44
3228 13969 0.802494 CCGCTGTACATTGGTCAACC 59.198 55.000 0.00 0.00 0.00 3.77
3229 13970 1.803334 TCCGCTGTACATTGGTCAAC 58.197 50.000 11.94 0.00 0.00 3.18
3230 13971 2.147958 GTTCCGCTGTACATTGGTCAA 58.852 47.619 11.94 0.13 0.00 3.18
3231 13972 1.070914 TGTTCCGCTGTACATTGGTCA 59.929 47.619 11.94 10.09 0.00 4.02
3232 13973 1.463444 GTGTTCCGCTGTACATTGGTC 59.537 52.381 11.94 8.22 0.00 4.02
3233 13974 1.071699 AGTGTTCCGCTGTACATTGGT 59.928 47.619 11.94 0.00 0.00 3.67
3234 13975 1.808411 AGTGTTCCGCTGTACATTGG 58.192 50.000 0.00 1.11 0.00 3.16
3235 13976 5.351233 TTTTAGTGTTCCGCTGTACATTG 57.649 39.130 0.00 0.00 0.00 2.82
3236 13977 5.761234 TCTTTTTAGTGTTCCGCTGTACATT 59.239 36.000 0.00 0.00 0.00 2.71
3237 13978 5.302360 TCTTTTTAGTGTTCCGCTGTACAT 58.698 37.500 0.00 0.00 0.00 2.29
3238 13979 4.695396 TCTTTTTAGTGTTCCGCTGTACA 58.305 39.130 0.00 0.00 0.00 2.90
3239 13980 5.235831 AGTTCTTTTTAGTGTTCCGCTGTAC 59.764 40.000 0.00 0.00 0.00 2.90
3240 13981 5.362263 AGTTCTTTTTAGTGTTCCGCTGTA 58.638 37.500 0.00 0.00 0.00 2.74
3241 13982 4.196971 AGTTCTTTTTAGTGTTCCGCTGT 58.803 39.130 0.00 0.00 0.00 4.40
3242 13983 4.813296 AGTTCTTTTTAGTGTTCCGCTG 57.187 40.909 0.00 0.00 0.00 5.18
3243 13984 6.764560 TCTTTAGTTCTTTTTAGTGTTCCGCT 59.235 34.615 0.00 0.00 0.00 5.52
3244 13985 6.951643 TCTTTAGTTCTTTTTAGTGTTCCGC 58.048 36.000 0.00 0.00 0.00 5.54
3245 13986 9.777575 TTTTCTTTAGTTCTTTTTAGTGTTCCG 57.222 29.630 0.00 0.00 0.00 4.30
3348 14089 6.581171 AAAATTGTTTGCCTTGGTCAAAAA 57.419 29.167 9.55 4.08 35.49 1.94
3349 14090 7.554118 TCATAAAATTGTTTGCCTTGGTCAAAA 59.446 29.630 9.55 0.00 35.49 2.44
3350 14091 7.050377 TCATAAAATTGTTTGCCTTGGTCAAA 58.950 30.769 5.57 5.57 0.00 2.69
3351 14092 6.586344 TCATAAAATTGTTTGCCTTGGTCAA 58.414 32.000 0.00 0.00 0.00 3.18
3352 14093 6.166984 TCATAAAATTGTTTGCCTTGGTCA 57.833 33.333 0.00 0.00 0.00 4.02
3353 14094 8.947055 ATATCATAAAATTGTTTGCCTTGGTC 57.053 30.769 0.00 0.00 0.00 4.02
3354 14095 9.165035 CAATATCATAAAATTGTTTGCCTTGGT 57.835 29.630 0.00 0.00 0.00 3.67
3355 14096 8.124199 GCAATATCATAAAATTGTTTGCCTTGG 58.876 33.333 0.00 0.00 35.86 3.61
3356 14097 7.847078 CGCAATATCATAAAATTGTTTGCCTTG 59.153 33.333 0.00 0.00 35.90 3.61
3357 14098 7.763528 TCGCAATATCATAAAATTGTTTGCCTT 59.236 29.630 0.00 0.00 35.90 4.35
3358 14099 7.264221 TCGCAATATCATAAAATTGTTTGCCT 58.736 30.769 0.00 0.00 35.90 4.75
3359 14100 7.462109 TCGCAATATCATAAAATTGTTTGCC 57.538 32.000 0.00 0.00 35.90 4.52
3360 14101 8.379161 TGTTCGCAATATCATAAAATTGTTTGC 58.621 29.630 0.00 0.00 35.86 3.68
3373 14114 9.515020 GAAATCCTAAATTTGTTCGCAATATCA 57.485 29.630 0.00 0.00 36.91 2.15
3374 14115 8.968242 GGAAATCCTAAATTTGTTCGCAATATC 58.032 33.333 0.00 0.00 36.91 1.63
3375 14116 8.474025 TGGAAATCCTAAATTTGTTCGCAATAT 58.526 29.630 0.00 0.00 35.38 1.28
3376 14117 7.831753 TGGAAATCCTAAATTTGTTCGCAATA 58.168 30.769 0.00 0.00 35.38 1.90
3377 14118 6.696411 TGGAAATCCTAAATTTGTTCGCAAT 58.304 32.000 0.00 0.00 35.38 3.56
3378 14119 6.090483 TGGAAATCCTAAATTTGTTCGCAA 57.910 33.333 0.00 0.00 36.82 4.85
3379 14120 5.713792 TGGAAATCCTAAATTTGTTCGCA 57.286 34.783 0.00 0.00 36.82 5.10
3380 14121 7.287950 GTTTTGGAAATCCTAAATTTGTTCGC 58.712 34.615 11.29 0.00 41.37 4.70
3381 14122 7.498225 CGTTTTGGAAATCCTAAATTTGTTCG 58.502 34.615 11.29 6.44 41.37 3.95
3382 14123 7.170828 AGCGTTTTGGAAATCCTAAATTTGTTC 59.829 33.333 11.29 0.00 41.37 3.18
3383 14124 6.989759 AGCGTTTTGGAAATCCTAAATTTGTT 59.010 30.769 11.29 2.56 41.37 2.83
3384 14125 6.521162 AGCGTTTTGGAAATCCTAAATTTGT 58.479 32.000 11.29 0.00 41.37 2.83
3385 14126 7.420184 AAGCGTTTTGGAAATCCTAAATTTG 57.580 32.000 11.29 6.96 41.37 2.32
3386 14127 8.445275 AAAAGCGTTTTGGAAATCCTAAATTT 57.555 26.923 11.29 6.51 41.37 1.82
3387 14128 9.549078 TTAAAAGCGTTTTGGAAATCCTAAATT 57.451 25.926 11.29 5.33 41.37 1.82
3388 14129 9.549078 TTTAAAAGCGTTTTGGAAATCCTAAAT 57.451 25.926 11.29 0.00 41.37 1.40
3389 14130 8.943909 TTTAAAAGCGTTTTGGAAATCCTAAA 57.056 26.923 2.19 5.18 38.16 1.85
3390 14131 8.943909 TTTTAAAAGCGTTTTGGAAATCCTAA 57.056 26.923 2.19 0.00 36.82 2.69
3391 14132 8.943909 TTTTTAAAAGCGTTTTGGAAATCCTA 57.056 26.923 2.19 0.00 36.82 2.94
3392 14133 7.851387 TTTTTAAAAGCGTTTTGGAAATCCT 57.149 28.000 2.19 0.00 36.82 3.24
3455 14196 8.807581 GTTCTTCGTTTCAAAATTTGTTCTCAT 58.192 29.630 5.56 0.00 0.00 2.90
3456 14197 7.810282 TGTTCTTCGTTTCAAAATTTGTTCTCA 59.190 29.630 5.56 0.00 0.00 3.27
3457 14198 8.168681 TGTTCTTCGTTTCAAAATTTGTTCTC 57.831 30.769 5.56 0.00 0.00 2.87
3458 14199 8.527567 TTGTTCTTCGTTTCAAAATTTGTTCT 57.472 26.923 5.56 0.00 0.00 3.01
3459 14200 9.753669 AATTGTTCTTCGTTTCAAAATTTGTTC 57.246 25.926 5.56 0.00 0.00 3.18
3461 14202 9.753669 GAAATTGTTCTTCGTTTCAAAATTTGT 57.246 25.926 5.56 0.00 32.36 2.83
3462 14203 9.752274 TGAAATTGTTCTTCGTTTCAAAATTTG 57.248 25.926 0.00 0.00 37.56 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.