Multiple sequence alignment - TraesCS7A01G231900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G231900 chr7A 100.000 4793 0 0 1 4793 202855892 202851100 0.000000e+00 8852.0
1 TraesCS7A01G231900 chr7A 85.172 290 38 5 2137 2422 203863648 203863936 4.690000e-75 292.0
2 TraesCS7A01G231900 chr7A 82.895 152 26 0 3076 3227 203864477 203864628 2.330000e-28 137.0
3 TraesCS7A01G231900 chrUn 91.000 3811 186 69 168 3888 92298447 92294704 0.000000e+00 4992.0
4 TraesCS7A01G231900 chrUn 94.900 451 13 7 3870 4319 357738688 357739129 0.000000e+00 697.0
5 TraesCS7A01G231900 chrUn 94.143 461 16 8 3880 4337 293302527 293302979 0.000000e+00 691.0
6 TraesCS7A01G231900 chrUn 94.143 461 16 8 3880 4337 293307924 293308376 0.000000e+00 691.0
7 TraesCS7A01G231900 chrUn 94.143 461 16 8 3880 4337 299835363 299835815 0.000000e+00 691.0
8 TraesCS7A01G231900 chrUn 94.143 461 16 8 3880 4337 299840105 299840557 0.000000e+00 691.0
9 TraesCS7A01G231900 chrUn 94.143 461 16 8 3880 4337 338437746 338438198 0.000000e+00 691.0
10 TraesCS7A01G231900 chrUn 79.435 496 64 22 4314 4791 92294719 92294244 2.780000e-82 316.0
11 TraesCS7A01G231900 chrUn 95.181 166 5 1 9 171 92298673 92298508 4.760000e-65 259.0
12 TraesCS7A01G231900 chrUn 84.868 152 23 0 3076 3227 478426568 478426417 2.310000e-33 154.0
13 TraesCS7A01G231900 chr7B 90.686 3060 147 61 896 3888 156755658 156752670 0.000000e+00 3945.0
14 TraesCS7A01G231900 chr7B 84.828 290 39 5 2137 2422 158075302 158075590 2.180000e-73 287.0
15 TraesCS7A01G231900 chr7B 86.522 230 13 11 326 552 156756085 156755871 2.230000e-58 237.0
16 TraesCS7A01G231900 chr7B 84.868 152 23 0 3076 3227 158076128 158076279 2.310000e-33 154.0
17 TraesCS7A01G231900 chr7B 96.721 61 1 1 832 891 156755747 156755687 3.050000e-17 100.0
18 TraesCS7A01G231900 chr2A 95.536 448 12 5 3872 4319 37947479 37947040 0.000000e+00 710.0
19 TraesCS7A01G231900 chr2A 95.056 445 13 6 3870 4313 739922609 739923045 0.000000e+00 691.0
20 TraesCS7A01G231900 chr5B 95.154 454 12 7 3870 4322 418324612 418324168 0.000000e+00 708.0
21 TraesCS7A01G231900 chr5B 94.934 454 16 4 3868 4321 688124146 688123700 0.000000e+00 704.0
22 TraesCS7A01G231900 chr5B 84.615 247 36 2 2171 2416 589229725 589229480 1.330000e-60 244.0
23 TraesCS7A01G231900 chr1B 96.322 435 8 5 3878 4312 3212412 3211986 0.000000e+00 708.0
24 TraesCS7A01G231900 chr1B 89.333 75 7 1 659 733 392728873 392728800 5.110000e-15 93.5
25 TraesCS7A01G231900 chr1B 86.667 60 5 3 3113 3171 687276748 687276691 4.000000e-06 63.9
26 TraesCS7A01G231900 chr3A 95.143 453 13 6 3870 4322 662558744 662559187 0.000000e+00 706.0
27 TraesCS7A01G231900 chr3A 94.900 451 14 6 3868 4317 28226301 28225859 0.000000e+00 697.0
28 TraesCS7A01G231900 chr1A 95.122 451 10 9 3873 4320 243603119 243602678 0.000000e+00 701.0
29 TraesCS7A01G231900 chr2B 93.737 463 19 7 3850 4312 746684840 746685292 0.000000e+00 686.0
30 TraesCS7A01G231900 chr2B 84.211 76 12 0 660 735 434694953 434695028 1.850000e-09 75.0
31 TraesCS7A01G231900 chr4B 94.789 403 12 6 3919 4320 664323134 664322740 1.890000e-173 619.0
32 TraesCS7A01G231900 chr4B 83.923 311 38 8 2141 2442 486207210 486206903 2.180000e-73 287.0
33 TraesCS7A01G231900 chr4D 83.951 324 39 11 2136 2448 394967793 394968114 1.010000e-76 298.0
34 TraesCS7A01G231900 chr4D 83.168 101 17 0 3069 3169 116271041 116271141 5.110000e-15 93.5
35 TraesCS7A01G231900 chr7D 85.172 290 38 5 2137 2422 194224549 194224837 4.690000e-75 292.0
36 TraesCS7A01G231900 chr7D 84.868 152 23 0 3076 3227 194225368 194225519 2.310000e-33 154.0
37 TraesCS7A01G231900 chr4A 83.281 317 41 10 2136 2442 76627411 76627725 1.020000e-71 281.0
38 TraesCS7A01G231900 chr4A 85.149 101 15 0 3069 3169 460239343 460239243 2.360000e-18 104.0
39 TraesCS7A01G231900 chr3B 90.179 112 11 0 3626 3737 4326418 4326529 3.870000e-31 147.0
40 TraesCS7A01G231900 chr2D 88.158 76 9 0 660 735 378360279 378360204 1.840000e-14 91.6
41 TraesCS7A01G231900 chr1D 85.526 76 11 0 660 735 60323701 60323626 3.980000e-11 80.5
42 TraesCS7A01G231900 chr1D 86.486 74 9 1 660 732 432337460 432337533 3.980000e-11 80.5
43 TraesCS7A01G231900 chr3D 84.416 77 10 2 660 735 495320631 495320556 1.850000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G231900 chr7A 202851100 202855892 4792 True 8852.000000 8852 100.000000 1 4793 1 chr7A.!!$R1 4792
1 TraesCS7A01G231900 chr7A 203863648 203864628 980 False 214.500000 292 84.033500 2137 3227 2 chr7A.!!$F1 1090
2 TraesCS7A01G231900 chrUn 92294244 92298673 4429 True 1855.666667 4992 88.538667 9 4791 3 chrUn.!!$R2 4782
3 TraesCS7A01G231900 chr7B 156752670 156756085 3415 True 1427.333333 3945 91.309667 326 3888 3 chr7B.!!$R1 3562
4 TraesCS7A01G231900 chr7B 158075302 158076279 977 False 220.500000 287 84.848000 2137 3227 2 chr7B.!!$F1 1090
5 TraesCS7A01G231900 chr7D 194224549 194225519 970 False 223.000000 292 85.020000 2137 3227 2 chr7D.!!$F1 1090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 739 0.110486 ACCATGGCCCGAATATCCAC 59.890 55.0 13.04 0.0 31.94 4.02 F
2474 2649 0.608640 ACCACGATCTCCACTTCACC 59.391 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2494 2675 0.324943 AGACGCACCAGTAAGCCATT 59.675 50.0 0.0 0.0 0.00 3.16 R
4079 4302 0.036732 TGGCGATCTTGTCCAAGCTT 59.963 50.0 0.0 0.0 38.28 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.249189 TGGTTCGGGCCTTGCTCT 61.249 61.111 0.84 0.00 0.00 4.09
61 62 1.522580 GCCTTGCTCTGATCCGTCC 60.523 63.158 0.00 0.00 0.00 4.79
87 88 3.738281 CGTCCGCTATCTTTTGTGATCCT 60.738 47.826 0.00 0.00 0.00 3.24
88 89 3.557595 GTCCGCTATCTTTTGTGATCCTG 59.442 47.826 0.00 0.00 0.00 3.86
159 163 4.213270 TGTGAATCGATTGTTCAGAACCAC 59.787 41.667 16.96 13.65 36.35 4.16
171 175 2.558795 TCAGAACCACTACTGTCTGCTC 59.441 50.000 0.00 0.00 35.84 4.26
179 247 5.304614 ACCACTACTGTCTGCTCTTTTCTTA 59.695 40.000 0.00 0.00 0.00 2.10
181 249 6.312426 CCACTACTGTCTGCTCTTTTCTTATG 59.688 42.308 0.00 0.00 0.00 1.90
188 256 4.637534 TCTGCTCTTTTCTTATGGTGATGC 59.362 41.667 0.00 0.00 0.00 3.91
189 257 3.696051 TGCTCTTTTCTTATGGTGATGCC 59.304 43.478 0.00 0.00 37.90 4.40
192 260 5.105595 GCTCTTTTCTTATGGTGATGCCTTT 60.106 40.000 0.00 0.00 38.35 3.11
262 330 6.439058 CCTGGGGATTATTTTGTTCCTTGTTA 59.561 38.462 0.00 0.00 0.00 2.41
366 434 6.549912 AAGTTTCCACGTAATTAGTTGGTC 57.450 37.500 10.71 5.22 0.00 4.02
373 444 6.040878 CCACGTAATTAGTTGGTCCTCTTAG 58.959 44.000 0.00 0.00 0.00 2.18
463 535 2.622942 GGAAGTGGAACAAGTGCATCAA 59.377 45.455 0.00 0.00 44.16 2.57
545 620 1.150081 GATGGAGTGGAGGCCCATG 59.850 63.158 0.00 0.00 45.68 3.66
556 631 4.287067 GTGGAGGCCCATGATCTAATCTAA 59.713 45.833 0.00 0.00 45.68 2.10
573 652 9.944376 TCTAATCTAATTCTAATACACCATGCC 57.056 33.333 0.00 0.00 0.00 4.40
631 710 6.070767 CCAAGAGGTCATCTTAAACTGGACTA 60.071 42.308 0.00 0.00 46.91 2.59
647 726 3.973973 TGGACTAGGATTTCCTACCATGG 59.026 47.826 11.19 11.19 46.48 3.66
656 735 2.038863 TCCTACCATGGCCCGAATAT 57.961 50.000 13.04 0.00 0.00 1.28
659 738 1.628340 CTACCATGGCCCGAATATCCA 59.372 52.381 13.04 0.00 0.00 3.41
660 739 0.110486 ACCATGGCCCGAATATCCAC 59.890 55.000 13.04 0.00 31.94 4.02
679 763 3.181497 CCACGTCAGATTTTTAGGCATGG 60.181 47.826 0.00 0.00 0.00 3.66
688 772 3.502191 TTTTAGGCATGGCAAATCGAC 57.498 42.857 22.64 0.00 0.00 4.20
695 779 2.250188 CATGGCAAATCGACCGTTTTC 58.750 47.619 0.00 0.00 0.00 2.29
699 783 2.420722 GGCAAATCGACCGTTTTCCATA 59.579 45.455 0.00 0.00 0.00 2.74
758 842 9.350357 GTTCGTAATAATGTGTCTTGAACTCTA 57.650 33.333 0.00 0.00 32.60 2.43
801 885 5.046159 CACAAACTAGTGGGGTCACCTTATA 60.046 44.000 0.00 0.00 44.64 0.98
891 978 6.639563 TCAGACCTTTTCCTTTTCTTTTTGG 58.360 36.000 0.00 0.00 0.00 3.28
892 979 6.439058 TCAGACCTTTTCCTTTTCTTTTTGGA 59.561 34.615 0.00 0.00 0.00 3.53
894 981 7.278646 CAGACCTTTTCCTTTTCTTTTTGGAAG 59.721 37.037 0.00 0.00 39.39 3.46
895 982 7.180229 AGACCTTTTCCTTTTCTTTTTGGAAGA 59.820 33.333 0.00 0.00 39.39 2.87
916 1025 9.643693 GGAAGAATGTTTTTGTATGTGATGAAT 57.356 29.630 0.00 0.00 0.00 2.57
1158 1304 0.614979 CTTCCGACCCTCCTCCTTCA 60.615 60.000 0.00 0.00 0.00 3.02
1167 1313 1.658686 CTCCTCCTTCACCCTCGTCG 61.659 65.000 0.00 0.00 0.00 5.12
1350 1496 1.442526 CGCCTCCACCTGATGCATTC 61.443 60.000 0.00 0.00 34.59 2.67
1430 1579 2.113986 GCCTGATAATGCCCCGCT 59.886 61.111 0.00 0.00 0.00 5.52
1477 1626 2.581354 CTTCTCCCACTCAGGCGG 59.419 66.667 0.00 0.00 35.39 6.13
2004 2153 2.979197 GAACCAGCAGCAGCAGCAG 61.979 63.158 12.92 3.65 45.49 4.24
2474 2649 0.608640 ACCACGATCTCCACTTCACC 59.391 55.000 0.00 0.00 0.00 4.02
2478 2653 2.100989 ACGATCTCCACTTCACCTACC 58.899 52.381 0.00 0.00 0.00 3.18
2494 2675 2.489971 CTACCAACTTCTTGAACGGCA 58.510 47.619 0.00 0.00 0.00 5.69
2501 2682 1.270550 CTTCTTGAACGGCAATGGCTT 59.729 47.619 5.02 0.00 40.87 4.35
2504 2685 1.812571 CTTGAACGGCAATGGCTTACT 59.187 47.619 5.02 0.00 40.87 2.24
2522 2703 2.076863 ACTGGTGCGTCTAAATTGCTC 58.923 47.619 0.00 0.00 0.00 4.26
2624 2810 1.009829 CCTGCACGAGGATTGTAAGC 58.990 55.000 0.00 0.00 46.33 3.09
2627 2813 0.375106 GCACGAGGATTGTAAGCTGC 59.625 55.000 0.00 0.00 0.00 5.25
2629 2815 2.350522 CACGAGGATTGTAAGCTGCTT 58.649 47.619 19.93 19.93 0.00 3.91
2631 2817 3.932710 CACGAGGATTGTAAGCTGCTTAA 59.067 43.478 22.58 11.52 0.00 1.85
2637 2823 4.859245 GGATTGTAAGCTGCTTAACTTTGC 59.141 41.667 22.58 10.48 0.00 3.68
2638 2824 5.335976 GGATTGTAAGCTGCTTAACTTTGCT 60.336 40.000 22.58 4.95 35.30 3.91
2639 2825 4.749245 TGTAAGCTGCTTAACTTTGCTC 57.251 40.909 22.58 9.15 33.10 4.26
2640 2826 3.502211 TGTAAGCTGCTTAACTTTGCTCC 59.498 43.478 22.58 8.49 33.10 4.70
2642 2828 3.703001 AGCTGCTTAACTTTGCTCCTA 57.297 42.857 0.00 0.00 0.00 2.94
2643 2829 3.339141 AGCTGCTTAACTTTGCTCCTAC 58.661 45.455 0.00 0.00 0.00 3.18
2645 2831 2.673368 CTGCTTAACTTTGCTCCTACGG 59.327 50.000 0.00 0.00 0.00 4.02
2646 2832 2.300723 TGCTTAACTTTGCTCCTACGGA 59.699 45.455 0.00 0.00 0.00 4.69
2671 2857 1.181786 CTGTTGGTGTGTGTTGGGTT 58.818 50.000 0.00 0.00 0.00 4.11
2679 2865 4.466370 TGGTGTGTGTTGGGTTGAAATTTA 59.534 37.500 0.00 0.00 0.00 1.40
2693 2879 7.329471 GGGTTGAAATTTACAGCTGAATTTCTC 59.671 37.037 32.31 27.05 45.62 2.87
2694 2880 7.867403 GGTTGAAATTTACAGCTGAATTTCTCA 59.133 33.333 32.31 23.75 45.62 3.27
2695 2881 9.415544 GTTGAAATTTACAGCTGAATTTCTCAT 57.584 29.630 32.31 14.29 45.62 2.90
2700 2886 4.698583 ACAGCTGAATTTCTCATTGCTC 57.301 40.909 23.35 0.00 34.26 4.26
2702 2888 4.395542 ACAGCTGAATTTCTCATTGCTCTC 59.604 41.667 23.35 0.00 34.26 3.20
2797 2995 0.392706 TTCGAAGCTCAGGTTCTGCA 59.607 50.000 14.56 0.00 37.82 4.41
2798 2996 0.319900 TCGAAGCTCAGGTTCTGCAC 60.320 55.000 14.56 0.00 37.82 4.57
2799 2997 0.320247 CGAAGCTCAGGTTCTGCACT 60.320 55.000 14.56 0.00 37.82 4.40
2800 2998 1.875576 CGAAGCTCAGGTTCTGCACTT 60.876 52.381 14.56 0.00 37.82 3.16
2802 3000 1.055040 AGCTCAGGTTCTGCACTTCT 58.945 50.000 0.00 0.00 0.00 2.85
2803 3001 1.419387 AGCTCAGGTTCTGCACTTCTT 59.581 47.619 0.00 0.00 0.00 2.52
2804 3002 2.634940 AGCTCAGGTTCTGCACTTCTTA 59.365 45.455 0.00 0.00 0.00 2.10
2805 3003 2.739379 GCTCAGGTTCTGCACTTCTTAC 59.261 50.000 0.00 0.00 0.00 2.34
2806 3004 3.803715 GCTCAGGTTCTGCACTTCTTACA 60.804 47.826 0.00 0.00 0.00 2.41
2807 3005 3.728845 TCAGGTTCTGCACTTCTTACAC 58.271 45.455 0.00 0.00 0.00 2.90
2810 3008 2.224314 GGTTCTGCACTTCTTACACTGC 59.776 50.000 0.00 0.00 0.00 4.40
2811 3009 2.872245 GTTCTGCACTTCTTACACTGCA 59.128 45.455 0.00 0.00 37.30 4.41
2812 3010 3.192541 TCTGCACTTCTTACACTGCAA 57.807 42.857 0.00 0.00 39.10 4.08
2813 3011 3.540617 TCTGCACTTCTTACACTGCAAA 58.459 40.909 0.00 0.00 39.10 3.68
2814 3012 3.561310 TCTGCACTTCTTACACTGCAAAG 59.439 43.478 0.00 0.00 39.10 2.77
2815 3013 2.033299 TGCACTTCTTACACTGCAAAGC 59.967 45.455 0.00 0.00 36.71 3.51
2817 3015 3.851105 GCACTTCTTACACTGCAAAGCTG 60.851 47.826 0.00 0.00 0.00 4.24
2818 3016 3.561310 CACTTCTTACACTGCAAAGCTGA 59.439 43.478 2.86 0.00 0.00 4.26
2819 3017 4.035558 CACTTCTTACACTGCAAAGCTGAA 59.964 41.667 2.86 0.00 0.00 3.02
2820 3018 4.035675 ACTTCTTACACTGCAAAGCTGAAC 59.964 41.667 2.86 0.00 0.00 3.18
2821 3019 3.808728 TCTTACACTGCAAAGCTGAACT 58.191 40.909 2.86 0.00 0.00 3.01
2822 3020 3.561310 TCTTACACTGCAAAGCTGAACTG 59.439 43.478 2.86 0.00 0.00 3.16
2824 3022 0.318445 CACTGCAAAGCTGAACTGCC 60.318 55.000 2.86 0.00 35.13 4.85
2827 3025 1.370900 GCAAAGCTGAACTGCCGTG 60.371 57.895 0.00 0.00 0.00 4.94
2828 3026 1.785041 GCAAAGCTGAACTGCCGTGA 61.785 55.000 0.00 0.00 0.00 4.35
2832 3030 0.108424 AGCTGAACTGCCGTGATCTC 60.108 55.000 0.00 0.00 0.00 2.75
2850 3048 7.222872 GTGATCTCTCTGAATAAATGGATGGT 58.777 38.462 0.00 0.00 0.00 3.55
2851 3049 8.370940 GTGATCTCTCTGAATAAATGGATGGTA 58.629 37.037 0.00 0.00 0.00 3.25
2880 3094 3.746492 AGTTACTGACGAAACCTGAATGC 59.254 43.478 0.00 0.00 0.00 3.56
2981 3195 1.308998 GATGGGCACATTCGGGTAAG 58.691 55.000 1.18 0.00 37.47 2.34
3036 3252 2.097541 CGTCGACAGAAAACGAGGAAAC 60.098 50.000 17.16 0.00 43.71 2.78
3056 3278 6.407475 AAACATTGTCAAAACTCTGTTTGC 57.593 33.333 11.57 0.00 38.31 3.68
3058 3280 2.187351 TGTCAAAACTCTGTTTGCGC 57.813 45.000 0.00 0.00 38.20 6.09
3169 3391 2.503061 CTGGAGCTCATCACCGGG 59.497 66.667 17.19 0.00 0.00 5.73
3234 3456 2.298163 TCGTGGAGTGGGTAAGAAAGAC 59.702 50.000 0.00 0.00 0.00 3.01
3239 3461 2.943036 GTGGGTAAGAAAGACCACCA 57.057 50.000 0.00 0.00 45.85 4.17
3253 3475 4.266543 ACCAGCAGCAGCAGCACT 62.267 61.111 12.92 0.00 45.49 4.40
3268 3490 1.346365 GCACTGACTGCAATGCAATG 58.654 50.000 9.92 0.48 45.92 2.82
3375 3597 3.775654 GAGGAGCTGGTGGACCCG 61.776 72.222 0.00 0.00 35.15 5.28
3484 3706 0.828022 CAAGATGGGGCAGGTACGTA 59.172 55.000 0.00 0.00 0.00 3.57
3485 3707 1.120530 AAGATGGGGCAGGTACGTAG 58.879 55.000 0.00 0.00 0.00 3.51
3520 3742 2.885266 GGAAGAAGAACCACCTCCAAAC 59.115 50.000 0.00 0.00 0.00 2.93
3536 3758 5.581085 CCTCCAAACTAACTAACCTTCGATG 59.419 44.000 0.00 0.00 0.00 3.84
3663 3885 4.021925 GTGCAGCCCGGGAAGAGT 62.022 66.667 29.31 0.00 0.00 3.24
3799 4021 2.279517 GGGATCTGTAGCCACGCG 60.280 66.667 3.53 3.53 30.46 6.01
3805 4027 0.958876 TCTGTAGCCACGCGAGAAGA 60.959 55.000 15.93 2.60 0.00 2.87
3862 4085 6.808008 TGTTTCTGTTCATCTCTTGATTCC 57.192 37.500 0.00 0.00 33.34 3.01
3866 4089 8.355913 GTTTCTGTTCATCTCTTGATTCCTTTT 58.644 33.333 0.00 0.00 33.34 2.27
3868 4091 9.573166 TTCTGTTCATCTCTTGATTCCTTTTTA 57.427 29.630 0.00 0.00 33.34 1.52
3869 4092 9.745018 TCTGTTCATCTCTTGATTCCTTTTTAT 57.255 29.630 0.00 0.00 33.34 1.40
3903 4126 5.738619 GTGAATTCCACTTTTTACCCCAT 57.261 39.130 2.27 0.00 42.44 4.00
3904 4127 6.844097 GTGAATTCCACTTTTTACCCCATA 57.156 37.500 2.27 0.00 42.44 2.74
3905 4128 7.418337 GTGAATTCCACTTTTTACCCCATAT 57.582 36.000 2.27 0.00 42.44 1.78
3906 4129 7.847096 GTGAATTCCACTTTTTACCCCATATT 58.153 34.615 2.27 0.00 42.44 1.28
3907 4130 8.318412 GTGAATTCCACTTTTTACCCCATATTT 58.682 33.333 2.27 0.00 42.44 1.40
3908 4131 9.548631 TGAATTCCACTTTTTACCCCATATTTA 57.451 29.630 2.27 0.00 0.00 1.40
3912 4135 9.992442 TTCCACTTTTTACCCCATATTTATACA 57.008 29.630 0.00 0.00 0.00 2.29
3919 4142 9.848710 TTTTACCCCATATTTATACATTCGTGA 57.151 29.630 0.00 0.00 0.00 4.35
3920 4143 8.836268 TTACCCCATATTTATACATTCGTGAC 57.164 34.615 0.00 0.00 0.00 3.67
3921 4144 6.833041 ACCCCATATTTATACATTCGTGACA 58.167 36.000 0.00 0.00 0.00 3.58
3922 4145 6.708949 ACCCCATATTTATACATTCGTGACAC 59.291 38.462 0.00 0.00 0.00 3.67
3923 4146 6.934645 CCCCATATTTATACATTCGTGACACT 59.065 38.462 3.68 0.00 0.00 3.55
3924 4147 8.092068 CCCCATATTTATACATTCGTGACACTA 58.908 37.037 3.68 0.00 0.00 2.74
3925 4148 9.483916 CCCATATTTATACATTCGTGACACTAA 57.516 33.333 3.68 0.00 0.00 2.24
3931 4154 8.876275 TTATACATTCGTGACACTAATTACCC 57.124 34.615 3.68 0.00 0.00 3.69
3932 4155 4.510571 ACATTCGTGACACTAATTACCCC 58.489 43.478 3.68 0.00 0.00 4.95
3933 4156 4.224370 ACATTCGTGACACTAATTACCCCT 59.776 41.667 3.68 0.00 0.00 4.79
3934 4157 4.895668 TTCGTGACACTAATTACCCCTT 57.104 40.909 3.68 0.00 0.00 3.95
3935 4158 4.460948 TCGTGACACTAATTACCCCTTC 57.539 45.455 3.68 0.00 0.00 3.46
3936 4159 3.119388 TCGTGACACTAATTACCCCTTCG 60.119 47.826 3.68 0.00 0.00 3.79
3937 4160 3.119388 CGTGACACTAATTACCCCTTCGA 60.119 47.826 3.68 0.00 0.00 3.71
3938 4161 4.430908 GTGACACTAATTACCCCTTCGAG 58.569 47.826 0.00 0.00 0.00 4.04
3939 4162 4.081807 GTGACACTAATTACCCCTTCGAGT 60.082 45.833 0.00 0.00 0.00 4.18
3940 4163 4.081862 TGACACTAATTACCCCTTCGAGTG 60.082 45.833 0.00 0.00 38.96 3.51
3941 4164 4.091549 ACACTAATTACCCCTTCGAGTGA 58.908 43.478 6.16 0.00 37.01 3.41
3942 4165 4.529377 ACACTAATTACCCCTTCGAGTGAA 59.471 41.667 6.16 0.00 37.01 3.18
3943 4166 5.012354 ACACTAATTACCCCTTCGAGTGAAA 59.988 40.000 6.16 0.00 37.01 2.69
3944 4167 5.935789 CACTAATTACCCCTTCGAGTGAAAA 59.064 40.000 0.00 0.00 35.87 2.29
3945 4168 6.598064 CACTAATTACCCCTTCGAGTGAAAAT 59.402 38.462 0.00 0.00 35.87 1.82
3946 4169 7.120726 CACTAATTACCCCTTCGAGTGAAAATT 59.879 37.037 0.00 0.00 35.87 1.82
3947 4170 6.510879 AATTACCCCTTCGAGTGAAAATTC 57.489 37.500 0.00 0.00 32.66 2.17
3948 4171 2.423577 ACCCCTTCGAGTGAAAATTCG 58.576 47.619 0.00 0.00 38.13 3.34
3949 4172 2.224450 ACCCCTTCGAGTGAAAATTCGT 60.224 45.455 0.00 0.00 37.99 3.85
3950 4173 2.415512 CCCCTTCGAGTGAAAATTCGTC 59.584 50.000 0.00 0.00 37.99 4.20
3951 4174 3.326747 CCCTTCGAGTGAAAATTCGTCT 58.673 45.455 0.00 0.00 37.99 4.18
3952 4175 4.491676 CCCTTCGAGTGAAAATTCGTCTA 58.508 43.478 0.00 0.00 37.99 2.59
3953 4176 4.563184 CCCTTCGAGTGAAAATTCGTCTAG 59.437 45.833 0.00 0.00 37.99 2.43
3954 4177 5.399858 CCTTCGAGTGAAAATTCGTCTAGA 58.600 41.667 0.00 0.00 37.99 2.43
3955 4178 5.862323 CCTTCGAGTGAAAATTCGTCTAGAA 59.138 40.000 0.00 10.52 37.13 2.10
3970 4193 9.853177 ATTCGTCTAGAATATCCCTTTTGAAAT 57.147 29.630 0.00 0.00 46.99 2.17
3971 4194 8.888579 TCGTCTAGAATATCCCTTTTGAAATC 57.111 34.615 0.00 0.00 0.00 2.17
3972 4195 8.705594 TCGTCTAGAATATCCCTTTTGAAATCT 58.294 33.333 0.00 0.00 0.00 2.40
3973 4196 9.331282 CGTCTAGAATATCCCTTTTGAAATCTT 57.669 33.333 0.00 0.00 0.00 2.40
3977 4200 8.899887 AGAATATCCCTTTTGAAATCTTTGGA 57.100 30.769 0.00 0.00 0.00 3.53
3978 4201 8.753133 AGAATATCCCTTTTGAAATCTTTGGAC 58.247 33.333 0.00 0.00 0.00 4.02
3979 4202 5.745312 ATCCCTTTTGAAATCTTTGGACC 57.255 39.130 0.00 0.00 0.00 4.46
3980 4203 3.901222 TCCCTTTTGAAATCTTTGGACCC 59.099 43.478 0.00 0.00 0.00 4.46
3981 4204 3.903714 CCCTTTTGAAATCTTTGGACCCT 59.096 43.478 0.00 0.00 0.00 4.34
3982 4205 4.347876 CCCTTTTGAAATCTTTGGACCCTT 59.652 41.667 0.00 0.00 0.00 3.95
3983 4206 5.299949 CCTTTTGAAATCTTTGGACCCTTG 58.700 41.667 0.00 0.00 0.00 3.61
3984 4207 5.163311 CCTTTTGAAATCTTTGGACCCTTGT 60.163 40.000 0.00 0.00 0.00 3.16
3985 4208 5.948742 TTTGAAATCTTTGGACCCTTGTT 57.051 34.783 0.00 0.00 0.00 2.83
3986 4209 5.948742 TTGAAATCTTTGGACCCTTGTTT 57.051 34.783 0.00 0.00 0.00 2.83
3987 4210 5.948742 TGAAATCTTTGGACCCTTGTTTT 57.051 34.783 0.00 0.00 0.00 2.43
3988 4211 6.306643 TGAAATCTTTGGACCCTTGTTTTT 57.693 33.333 0.00 0.00 0.00 1.94
4006 4229 4.939399 TGATGCGTGTCCATCAGG 57.061 55.556 1.03 0.00 44.79 3.86
4007 4230 1.982430 TGATGCGTGTCCATCAGGT 59.018 52.632 1.03 0.00 44.79 4.00
4008 4231 1.190643 TGATGCGTGTCCATCAGGTA 58.809 50.000 1.03 0.00 44.79 3.08
4009 4232 1.552792 TGATGCGTGTCCATCAGGTAA 59.447 47.619 1.03 0.00 44.79 2.85
4010 4233 2.205074 GATGCGTGTCCATCAGGTAAG 58.795 52.381 0.00 0.00 40.96 2.34
4011 4234 0.249120 TGCGTGTCCATCAGGTAAGG 59.751 55.000 0.00 0.00 35.89 2.69
4012 4235 0.249398 GCGTGTCCATCAGGTAAGGT 59.751 55.000 0.00 0.00 35.89 3.50
4013 4236 2.007049 GCGTGTCCATCAGGTAAGGTG 61.007 57.143 0.00 0.00 35.89 4.00
4014 4237 1.275291 CGTGTCCATCAGGTAAGGTGT 59.725 52.381 0.00 0.00 35.89 4.16
4015 4238 2.699954 GTGTCCATCAGGTAAGGTGTG 58.300 52.381 0.00 0.00 35.89 3.82
4016 4239 2.301870 GTGTCCATCAGGTAAGGTGTGA 59.698 50.000 0.00 0.00 35.89 3.58
4017 4240 2.567169 TGTCCATCAGGTAAGGTGTGAG 59.433 50.000 0.00 0.00 35.89 3.51
4018 4241 2.093447 GTCCATCAGGTAAGGTGTGAGG 60.093 54.545 0.00 0.00 35.89 3.86
4019 4242 1.909302 CCATCAGGTAAGGTGTGAGGT 59.091 52.381 0.00 0.00 0.00 3.85
4020 4243 2.355108 CCATCAGGTAAGGTGTGAGGTG 60.355 54.545 0.00 0.00 0.00 4.00
4021 4244 2.391926 TCAGGTAAGGTGTGAGGTGA 57.608 50.000 0.00 0.00 0.00 4.02
4022 4245 2.902608 TCAGGTAAGGTGTGAGGTGAT 58.097 47.619 0.00 0.00 0.00 3.06
4023 4246 2.567169 TCAGGTAAGGTGTGAGGTGATG 59.433 50.000 0.00 0.00 0.00 3.07
4024 4247 1.279271 AGGTAAGGTGTGAGGTGATGC 59.721 52.381 0.00 0.00 0.00 3.91
4025 4248 1.679032 GGTAAGGTGTGAGGTGATGCC 60.679 57.143 0.00 0.00 37.58 4.40
4026 4249 0.618458 TAAGGTGTGAGGTGATGCCC 59.382 55.000 0.00 0.00 38.26 5.36
4027 4250 1.136329 AAGGTGTGAGGTGATGCCCT 61.136 55.000 0.00 0.00 38.26 5.19
4028 4251 1.377725 GGTGTGAGGTGATGCCCTG 60.378 63.158 0.00 0.00 38.26 4.45
4029 4252 1.376466 GTGTGAGGTGATGCCCTGT 59.624 57.895 0.00 0.00 38.26 4.00
4030 4253 0.613260 GTGTGAGGTGATGCCCTGTA 59.387 55.000 0.00 0.00 38.26 2.74
4031 4254 1.210478 GTGTGAGGTGATGCCCTGTAT 59.790 52.381 0.00 0.00 38.26 2.29
4032 4255 1.486310 TGTGAGGTGATGCCCTGTATC 59.514 52.381 0.00 0.00 38.26 2.24
4033 4256 1.131638 TGAGGTGATGCCCTGTATCC 58.868 55.000 0.00 0.00 38.26 2.59
4034 4257 1.131638 GAGGTGATGCCCTGTATCCA 58.868 55.000 0.00 0.00 38.26 3.41
4035 4258 1.490490 GAGGTGATGCCCTGTATCCAA 59.510 52.381 0.00 0.00 38.26 3.53
4036 4259 1.922447 AGGTGATGCCCTGTATCCAAA 59.078 47.619 0.00 0.00 38.26 3.28
4037 4260 2.311542 AGGTGATGCCCTGTATCCAAAA 59.688 45.455 0.00 0.00 38.26 2.44
4038 4261 3.096092 GGTGATGCCCTGTATCCAAAAA 58.904 45.455 0.00 0.00 0.00 1.94
4039 4262 3.119137 GGTGATGCCCTGTATCCAAAAAC 60.119 47.826 0.00 0.00 0.00 2.43
4040 4263 3.509575 GTGATGCCCTGTATCCAAAAACA 59.490 43.478 0.00 0.00 0.00 2.83
4041 4264 4.160252 GTGATGCCCTGTATCCAAAAACAT 59.840 41.667 0.00 0.00 0.00 2.71
4042 4265 4.160065 TGATGCCCTGTATCCAAAAACATG 59.840 41.667 0.00 0.00 0.00 3.21
4043 4266 3.505386 TGCCCTGTATCCAAAAACATGT 58.495 40.909 0.00 0.00 0.00 3.21
4044 4267 3.257873 TGCCCTGTATCCAAAAACATGTG 59.742 43.478 0.00 0.00 0.00 3.21
4045 4268 3.368323 GCCCTGTATCCAAAAACATGTGG 60.368 47.826 0.00 0.00 36.13 4.17
4047 4270 4.082245 CCCTGTATCCAAAAACATGTGGAC 60.082 45.833 0.00 0.00 46.53 4.02
4048 4271 4.379394 CCTGTATCCAAAAACATGTGGACG 60.379 45.833 0.00 0.00 46.53 4.79
4049 4272 3.504134 TGTATCCAAAAACATGTGGACGG 59.496 43.478 0.00 0.00 46.53 4.79
4050 4273 0.671251 TCCAAAAACATGTGGACGGC 59.329 50.000 0.00 0.00 39.04 5.68
4051 4274 0.319469 CCAAAAACATGTGGACGGCC 60.319 55.000 0.00 0.00 37.03 6.13
4052 4275 0.387202 CAAAAACATGTGGACGGCCA 59.613 50.000 5.41 5.41 43.47 5.36
4060 4283 2.847234 TGGACGGCCACAAGGAGT 60.847 61.111 5.41 0.00 39.92 3.85
4072 4295 3.866651 CACAAGGAGTGGAACAGATAGG 58.133 50.000 0.00 0.00 44.69 2.57
4073 4296 2.237392 ACAAGGAGTGGAACAGATAGGC 59.763 50.000 0.00 0.00 41.80 3.93
4074 4297 2.237143 CAAGGAGTGGAACAGATAGGCA 59.763 50.000 0.00 0.00 41.80 4.75
4075 4298 2.551270 AGGAGTGGAACAGATAGGCAA 58.449 47.619 0.00 0.00 41.80 4.52
4076 4299 2.503356 AGGAGTGGAACAGATAGGCAAG 59.497 50.000 0.00 0.00 41.80 4.01
4077 4300 2.501723 GGAGTGGAACAGATAGGCAAGA 59.498 50.000 0.00 0.00 41.80 3.02
4078 4301 3.431486 GGAGTGGAACAGATAGGCAAGAG 60.431 52.174 0.00 0.00 41.80 2.85
4079 4302 3.445008 AGTGGAACAGATAGGCAAGAGA 58.555 45.455 0.00 0.00 41.80 3.10
4080 4303 3.840666 AGTGGAACAGATAGGCAAGAGAA 59.159 43.478 0.00 0.00 41.80 2.87
4081 4304 4.081198 AGTGGAACAGATAGGCAAGAGAAG 60.081 45.833 0.00 0.00 41.80 2.85
4082 4305 3.202097 GGAACAGATAGGCAAGAGAAGC 58.798 50.000 0.00 0.00 0.00 3.86
4083 4306 3.118445 GGAACAGATAGGCAAGAGAAGCT 60.118 47.826 0.00 0.00 0.00 3.74
4084 4307 4.512484 GAACAGATAGGCAAGAGAAGCTT 58.488 43.478 0.00 0.00 37.29 3.74
4095 4318 3.244033 AGAGAAGCTTGGACAAGATCG 57.756 47.619 15.76 0.00 40.79 3.69
4096 4319 1.663135 GAGAAGCTTGGACAAGATCGC 59.337 52.381 15.76 10.28 40.79 4.58
4097 4320 0.729690 GAAGCTTGGACAAGATCGCC 59.270 55.000 15.76 0.00 40.79 5.54
4098 4321 0.036732 AAGCTTGGACAAGATCGCCA 59.963 50.000 15.76 0.00 40.79 5.69
4099 4322 0.036732 AGCTTGGACAAGATCGCCAA 59.963 50.000 15.76 10.49 40.79 4.52
4100 4323 1.098050 GCTTGGACAAGATCGCCAAT 58.902 50.000 15.76 0.00 40.59 3.16
4101 4324 1.202222 GCTTGGACAAGATCGCCAATG 60.202 52.381 15.76 7.99 40.59 2.82
4102 4325 2.358957 CTTGGACAAGATCGCCAATGA 58.641 47.619 6.19 0.00 40.59 2.57
4103 4326 2.715749 TGGACAAGATCGCCAATGAT 57.284 45.000 0.00 0.00 0.00 2.45
4104 4327 2.291365 TGGACAAGATCGCCAATGATG 58.709 47.619 0.00 0.00 0.00 3.07
4105 4328 1.002033 GGACAAGATCGCCAATGATGC 60.002 52.381 0.00 0.00 0.00 3.91
4106 4329 1.002033 GACAAGATCGCCAATGATGCC 60.002 52.381 0.00 0.00 0.00 4.40
4107 4330 0.313043 CAAGATCGCCAATGATGCCC 59.687 55.000 0.00 0.00 0.00 5.36
4108 4331 0.184451 AAGATCGCCAATGATGCCCT 59.816 50.000 0.00 0.00 0.00 5.19
4109 4332 0.250640 AGATCGCCAATGATGCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
4110 4333 1.228367 ATCGCCAATGATGCCCTCC 60.228 57.895 0.00 0.00 0.00 4.30
4111 4334 3.282157 CGCCAATGATGCCCTCCG 61.282 66.667 0.00 0.00 0.00 4.63
4112 4335 2.192979 GCCAATGATGCCCTCCGA 59.807 61.111 0.00 0.00 0.00 4.55
4113 4336 1.228367 GCCAATGATGCCCTCCGAT 60.228 57.895 0.00 0.00 0.00 4.18
4114 4337 1.239968 GCCAATGATGCCCTCCGATC 61.240 60.000 0.00 0.00 0.00 3.69
4115 4338 0.607489 CCAATGATGCCCTCCGATCC 60.607 60.000 0.00 0.00 0.00 3.36
4116 4339 0.399454 CAATGATGCCCTCCGATCCT 59.601 55.000 0.00 0.00 0.00 3.24
4117 4340 1.143813 AATGATGCCCTCCGATCCTT 58.856 50.000 0.00 0.00 0.00 3.36
4118 4341 2.030027 ATGATGCCCTCCGATCCTTA 57.970 50.000 0.00 0.00 0.00 2.69
4119 4342 1.048601 TGATGCCCTCCGATCCTTAC 58.951 55.000 0.00 0.00 0.00 2.34
4120 4343 1.048601 GATGCCCTCCGATCCTTACA 58.951 55.000 0.00 0.00 0.00 2.41
4121 4344 1.001406 GATGCCCTCCGATCCTTACAG 59.999 57.143 0.00 0.00 0.00 2.74
4122 4345 0.325296 TGCCCTCCGATCCTTACAGT 60.325 55.000 0.00 0.00 0.00 3.55
4123 4346 0.831307 GCCCTCCGATCCTTACAGTT 59.169 55.000 0.00 0.00 0.00 3.16
4124 4347 1.209747 GCCCTCCGATCCTTACAGTTT 59.790 52.381 0.00 0.00 0.00 2.66
4125 4348 2.355818 GCCCTCCGATCCTTACAGTTTT 60.356 50.000 0.00 0.00 0.00 2.43
4126 4349 3.872630 GCCCTCCGATCCTTACAGTTTTT 60.873 47.826 0.00 0.00 0.00 1.94
4149 4372 4.733972 TTTACGAATCAATGACGCAACA 57.266 36.364 0.00 0.00 0.00 3.33
4150 4373 4.937696 TTACGAATCAATGACGCAACAT 57.062 36.364 0.00 0.00 0.00 2.71
4151 4374 3.121559 ACGAATCAATGACGCAACATG 57.878 42.857 0.00 0.00 0.00 3.21
4152 4375 2.483877 ACGAATCAATGACGCAACATGT 59.516 40.909 0.00 0.00 0.00 3.21
4153 4376 3.093574 CGAATCAATGACGCAACATGTC 58.906 45.455 0.00 0.00 36.88 3.06
4154 4377 2.811902 ATCAATGACGCAACATGTCG 57.188 45.000 0.00 1.40 39.22 4.35
4155 4378 1.789506 TCAATGACGCAACATGTCGA 58.210 45.000 13.28 0.00 39.22 4.20
4156 4379 2.345876 TCAATGACGCAACATGTCGAT 58.654 42.857 13.28 0.00 39.22 3.59
4157 4380 2.348362 TCAATGACGCAACATGTCGATC 59.652 45.455 13.28 7.86 39.22 3.69
4158 4381 1.290203 ATGACGCAACATGTCGATCC 58.710 50.000 13.28 3.70 39.22 3.36
4159 4382 0.246360 TGACGCAACATGTCGATCCT 59.754 50.000 13.28 0.00 39.22 3.24
4160 4383 1.474879 TGACGCAACATGTCGATCCTA 59.525 47.619 13.28 0.00 39.22 2.94
4161 4384 2.100749 TGACGCAACATGTCGATCCTAT 59.899 45.455 13.28 0.00 39.22 2.57
4162 4385 2.726760 GACGCAACATGTCGATCCTATC 59.273 50.000 13.28 0.00 0.00 2.08
4178 4401 7.548196 GATCCTATCGACCATAAACAAACAA 57.452 36.000 0.00 0.00 0.00 2.83
4179 4402 7.931578 ATCCTATCGACCATAAACAAACAAA 57.068 32.000 0.00 0.00 0.00 2.83
4180 4403 7.747155 TCCTATCGACCATAAACAAACAAAA 57.253 32.000 0.00 0.00 0.00 2.44
4181 4404 8.343168 TCCTATCGACCATAAACAAACAAAAT 57.657 30.769 0.00 0.00 0.00 1.82
4182 4405 8.240682 TCCTATCGACCATAAACAAACAAAATG 58.759 33.333 0.00 0.00 0.00 2.32
4183 4406 8.026607 CCTATCGACCATAAACAAACAAAATGT 58.973 33.333 0.00 0.00 0.00 2.71
4186 4409 9.751542 ATCGACCATAAACAAACAAAATGTAAA 57.248 25.926 0.00 0.00 0.00 2.01
4187 4410 9.582431 TCGACCATAAACAAACAAAATGTAAAA 57.418 25.926 0.00 0.00 0.00 1.52
4188 4411 9.626332 CGACCATAAACAAACAAAATGTAAAAC 57.374 29.630 0.00 0.00 0.00 2.43
4191 4414 9.928236 CCATAAACAAACAAAATGTAAAACTGG 57.072 29.630 0.00 0.00 0.00 4.00
4192 4415 9.928236 CATAAACAAACAAAATGTAAAACTGGG 57.072 29.630 0.00 0.00 0.00 4.45
4193 4416 9.892130 ATAAACAAACAAAATGTAAAACTGGGA 57.108 25.926 0.00 0.00 0.00 4.37
4194 4417 8.800370 AAACAAACAAAATGTAAAACTGGGAT 57.200 26.923 0.00 0.00 0.00 3.85
4195 4418 9.892130 AAACAAACAAAATGTAAAACTGGGATA 57.108 25.926 0.00 0.00 0.00 2.59
4196 4419 9.892130 AACAAACAAAATGTAAAACTGGGATAA 57.108 25.926 0.00 0.00 0.00 1.75
4197 4420 9.892130 ACAAACAAAATGTAAAACTGGGATAAA 57.108 25.926 0.00 0.00 0.00 1.40
4200 4423 8.896320 ACAAAATGTAAAACTGGGATAAAACC 57.104 30.769 0.00 0.00 0.00 3.27
4201 4424 7.654116 ACAAAATGTAAAACTGGGATAAAACCG 59.346 33.333 0.00 0.00 0.00 4.44
4202 4425 6.904463 AATGTAAAACTGGGATAAAACCGT 57.096 33.333 0.00 0.00 0.00 4.83
4203 4426 5.945466 TGTAAAACTGGGATAAAACCGTC 57.055 39.130 0.00 0.00 0.00 4.79
4204 4427 5.623169 TGTAAAACTGGGATAAAACCGTCT 58.377 37.500 0.00 0.00 0.00 4.18
4205 4428 6.063404 TGTAAAACTGGGATAAAACCGTCTT 58.937 36.000 0.00 0.00 0.00 3.01
4206 4429 7.222872 TGTAAAACTGGGATAAAACCGTCTTA 58.777 34.615 0.00 0.00 0.00 2.10
4207 4430 7.718753 TGTAAAACTGGGATAAAACCGTCTTAA 59.281 33.333 0.00 0.00 0.00 1.85
4208 4431 7.585579 AAAACTGGGATAAAACCGTCTTAAA 57.414 32.000 0.00 0.00 0.00 1.52
4209 4432 7.585579 AAACTGGGATAAAACCGTCTTAAAA 57.414 32.000 0.00 0.00 0.00 1.52
4210 4433 6.812879 ACTGGGATAAAACCGTCTTAAAAG 57.187 37.500 0.00 0.00 0.00 2.27
4211 4434 6.301486 ACTGGGATAAAACCGTCTTAAAAGT 58.699 36.000 0.00 0.00 0.00 2.66
4212 4435 6.429078 ACTGGGATAAAACCGTCTTAAAAGTC 59.571 38.462 0.00 0.00 0.00 3.01
4213 4436 6.536447 TGGGATAAAACCGTCTTAAAAGTCT 58.464 36.000 0.00 0.00 0.00 3.24
4214 4437 6.652062 TGGGATAAAACCGTCTTAAAAGTCTC 59.348 38.462 0.00 0.00 0.00 3.36
4215 4438 6.093219 GGGATAAAACCGTCTTAAAAGTCTCC 59.907 42.308 0.00 0.00 0.00 3.71
4216 4439 6.652062 GGATAAAACCGTCTTAAAAGTCTCCA 59.348 38.462 0.00 0.00 0.00 3.86
4217 4440 7.173735 GGATAAAACCGTCTTAAAAGTCTCCAA 59.826 37.037 0.00 0.00 0.00 3.53
4218 4441 6.762702 AAAACCGTCTTAAAAGTCTCCAAA 57.237 33.333 0.00 0.00 0.00 3.28
4219 4442 6.762702 AAACCGTCTTAAAAGTCTCCAAAA 57.237 33.333 0.00 0.00 0.00 2.44
4220 4443 6.954487 AACCGTCTTAAAAGTCTCCAAAAT 57.046 33.333 0.00 0.00 0.00 1.82
4221 4444 6.555812 ACCGTCTTAAAAGTCTCCAAAATC 57.444 37.500 0.00 0.00 0.00 2.17
4222 4445 6.296803 ACCGTCTTAAAAGTCTCCAAAATCT 58.703 36.000 0.00 0.00 0.00 2.40
4223 4446 6.204882 ACCGTCTTAAAAGTCTCCAAAATCTG 59.795 38.462 0.00 0.00 0.00 2.90
4224 4447 6.426937 CCGTCTTAAAAGTCTCCAAAATCTGA 59.573 38.462 0.00 0.00 0.00 3.27
4225 4448 7.291567 CGTCTTAAAAGTCTCCAAAATCTGAC 58.708 38.462 0.00 0.00 0.00 3.51
4226 4449 7.042051 CGTCTTAAAAGTCTCCAAAATCTGACA 60.042 37.037 0.00 0.00 32.41 3.58
4227 4450 8.787852 GTCTTAAAAGTCTCCAAAATCTGACAT 58.212 33.333 0.00 0.00 32.41 3.06
4228 4451 9.354673 TCTTAAAAGTCTCCAAAATCTGACATT 57.645 29.630 0.00 0.00 32.41 2.71
4229 4452 9.971922 CTTAAAAGTCTCCAAAATCTGACATTT 57.028 29.630 0.00 0.00 35.50 2.32
4230 4453 9.965824 TTAAAAGTCTCCAAAATCTGACATTTC 57.034 29.630 0.00 0.00 34.03 2.17
4231 4454 7.587037 AAAGTCTCCAAAATCTGACATTTCA 57.413 32.000 0.00 0.00 32.41 2.69
4232 4455 6.566197 AGTCTCCAAAATCTGACATTTCAC 57.434 37.500 0.00 0.00 32.41 3.18
4233 4456 6.064060 AGTCTCCAAAATCTGACATTTCACA 58.936 36.000 0.00 0.00 32.41 3.58
4234 4457 6.547141 AGTCTCCAAAATCTGACATTTCACAA 59.453 34.615 0.00 0.00 32.41 3.33
4235 4458 7.068593 AGTCTCCAAAATCTGACATTTCACAAA 59.931 33.333 0.00 0.00 32.41 2.83
4236 4459 7.869429 GTCTCCAAAATCTGACATTTCACAAAT 59.131 33.333 0.00 0.00 0.00 2.32
4251 4474 3.078594 ACAAATGTGACAAAGTTCCGC 57.921 42.857 0.00 0.00 0.00 5.54
4252 4475 2.687935 ACAAATGTGACAAAGTTCCGCT 59.312 40.909 0.00 0.00 0.00 5.52
4253 4476 3.880490 ACAAATGTGACAAAGTTCCGCTA 59.120 39.130 0.00 0.00 0.00 4.26
4254 4477 4.336993 ACAAATGTGACAAAGTTCCGCTAA 59.663 37.500 0.00 0.00 0.00 3.09
4255 4478 5.163602 ACAAATGTGACAAAGTTCCGCTAAA 60.164 36.000 0.00 0.00 0.00 1.85
4256 4479 5.705609 AATGTGACAAAGTTCCGCTAAAT 57.294 34.783 0.00 0.00 0.00 1.40
4257 4480 6.811253 AATGTGACAAAGTTCCGCTAAATA 57.189 33.333 0.00 0.00 0.00 1.40
4258 4481 5.856126 TGTGACAAAGTTCCGCTAAATAG 57.144 39.130 0.00 0.00 0.00 1.73
4259 4482 4.693566 TGTGACAAAGTTCCGCTAAATAGG 59.306 41.667 0.00 0.00 0.00 2.57
4260 4483 4.094442 GTGACAAAGTTCCGCTAAATAGGG 59.906 45.833 0.00 0.00 36.17 3.53
4261 4484 4.259356 GACAAAGTTCCGCTAAATAGGGT 58.741 43.478 4.14 0.00 34.77 4.34
4262 4485 5.046448 TGACAAAGTTCCGCTAAATAGGGTA 60.046 40.000 4.14 0.00 34.77 3.69
4263 4486 5.807909 ACAAAGTTCCGCTAAATAGGGTAA 58.192 37.500 4.14 0.00 34.77 2.85
4264 4487 6.420638 ACAAAGTTCCGCTAAATAGGGTAAT 58.579 36.000 4.14 0.00 34.77 1.89
4265 4488 7.567458 ACAAAGTTCCGCTAAATAGGGTAATA 58.433 34.615 4.14 0.00 34.77 0.98
4266 4489 8.215736 ACAAAGTTCCGCTAAATAGGGTAATAT 58.784 33.333 4.14 0.00 34.77 1.28
4267 4490 8.504005 CAAAGTTCCGCTAAATAGGGTAATATG 58.496 37.037 4.14 0.00 34.77 1.78
4268 4491 7.312415 AGTTCCGCTAAATAGGGTAATATGT 57.688 36.000 4.14 0.00 34.77 2.29
4269 4492 7.159372 AGTTCCGCTAAATAGGGTAATATGTG 58.841 38.462 4.14 0.00 34.77 3.21
4270 4493 6.675413 TCCGCTAAATAGGGTAATATGTGT 57.325 37.500 4.14 0.00 34.77 3.72
4271 4494 6.694447 TCCGCTAAATAGGGTAATATGTGTC 58.306 40.000 4.14 0.00 34.77 3.67
4272 4495 6.268158 TCCGCTAAATAGGGTAATATGTGTCA 59.732 38.462 4.14 0.00 34.77 3.58
4273 4496 6.367969 CCGCTAAATAGGGTAATATGTGTCAC 59.632 42.308 0.00 0.00 34.77 3.67
4274 4497 6.926826 CGCTAAATAGGGTAATATGTGTCACA 59.073 38.462 8.40 8.40 0.00 3.58
4275 4498 7.439955 CGCTAAATAGGGTAATATGTGTCACAA 59.560 37.037 10.28 0.06 0.00 3.33
4276 4499 9.116067 GCTAAATAGGGTAATATGTGTCACAAA 57.884 33.333 10.28 0.00 0.00 2.83
4279 4502 9.474313 AAATAGGGTAATATGTGTCACAAATGT 57.526 29.630 10.28 0.00 0.00 2.71
4281 4504 7.859325 AGGGTAATATGTGTCACAAATGTAC 57.141 36.000 10.28 9.69 0.00 2.90
4282 4505 7.398829 AGGGTAATATGTGTCACAAATGTACA 58.601 34.615 10.28 0.00 0.00 2.90
4283 4506 7.885922 AGGGTAATATGTGTCACAAATGTACAA 59.114 33.333 10.28 0.00 31.29 2.41
4284 4507 7.966204 GGGTAATATGTGTCACAAATGTACAAC 59.034 37.037 10.28 0.00 31.29 3.32
4285 4508 8.726988 GGTAATATGTGTCACAAATGTACAACT 58.273 33.333 10.28 0.00 31.29 3.16
4288 4511 8.840833 ATATGTGTCACAAATGTACAACTACA 57.159 30.769 10.28 0.90 37.28 2.74
4289 4512 6.986904 TGTGTCACAAATGTACAACTACAA 57.013 33.333 2.31 0.00 36.43 2.41
4290 4513 7.010697 TGTGTCACAAATGTACAACTACAAG 57.989 36.000 2.31 0.00 36.43 3.16
4291 4514 6.037720 TGTGTCACAAATGTACAACTACAAGG 59.962 38.462 2.31 0.00 36.43 3.61
4292 4515 6.037830 GTGTCACAAATGTACAACTACAAGGT 59.962 38.462 0.00 0.00 36.43 3.50
4293 4516 7.225145 GTGTCACAAATGTACAACTACAAGGTA 59.775 37.037 0.00 0.00 36.43 3.08
4294 4517 7.769507 TGTCACAAATGTACAACTACAAGGTAA 59.230 33.333 0.00 0.00 36.43 2.85
4295 4518 8.614346 GTCACAAATGTACAACTACAAGGTAAA 58.386 33.333 0.00 0.00 36.43 2.01
4296 4519 9.175312 TCACAAATGTACAACTACAAGGTAAAA 57.825 29.630 0.00 0.00 36.43 1.52
4297 4520 9.790389 CACAAATGTACAACTACAAGGTAAAAA 57.210 29.630 0.00 0.00 36.43 1.94
4382 4605 5.125417 CCTTTGATGTGTACATTAACAGGGG 59.875 44.000 0.00 0.32 36.57 4.79
4383 4606 4.919774 TGATGTGTACATTAACAGGGGT 57.080 40.909 0.00 0.00 36.57 4.95
4384 4607 6.375830 TTGATGTGTACATTAACAGGGGTA 57.624 37.500 0.00 0.00 36.57 3.69
4399 4622 0.850784 GGGTATATGCCCACAGGGTT 59.149 55.000 22.99 0.00 46.51 4.11
4457 4680 2.370281 TTCTCATCTGCTCACGGAAC 57.630 50.000 0.00 0.00 33.99 3.62
4461 4684 3.509967 TCTCATCTGCTCACGGAACTAAA 59.490 43.478 0.00 0.00 33.99 1.85
4469 4692 4.753107 TGCTCACGGAACTAAAAACTAAGG 59.247 41.667 0.00 0.00 0.00 2.69
4470 4693 4.378149 GCTCACGGAACTAAAAACTAAGGC 60.378 45.833 0.00 0.00 0.00 4.35
4471 4694 4.067192 TCACGGAACTAAAAACTAAGGCC 58.933 43.478 0.00 0.00 0.00 5.19
4472 4695 4.070009 CACGGAACTAAAAACTAAGGCCT 58.930 43.478 0.00 0.00 0.00 5.19
4473 4696 4.153655 CACGGAACTAAAAACTAAGGCCTC 59.846 45.833 5.23 0.00 0.00 4.70
4475 4698 3.688185 GGAACTAAAAACTAAGGCCTCGG 59.312 47.826 5.23 4.26 0.00 4.63
4476 4699 4.564199 GGAACTAAAAACTAAGGCCTCGGA 60.564 45.833 5.23 0.00 0.00 4.55
4479 4702 3.713826 AAAAACTAAGGCCTCGGATGA 57.286 42.857 5.23 0.00 0.00 2.92
4480 4703 3.713826 AAAACTAAGGCCTCGGATGAA 57.286 42.857 5.23 0.00 0.00 2.57
4481 4704 2.693267 AACTAAGGCCTCGGATGAAC 57.307 50.000 5.23 0.00 0.00 3.18
4482 4705 1.568504 ACTAAGGCCTCGGATGAACA 58.431 50.000 5.23 0.00 0.00 3.18
4484 4707 1.482593 CTAAGGCCTCGGATGAACAGT 59.517 52.381 5.23 0.00 0.00 3.55
4486 4709 1.568504 AGGCCTCGGATGAACAGTAA 58.431 50.000 0.00 0.00 0.00 2.24
4488 4711 2.505819 AGGCCTCGGATGAACAGTAAAT 59.494 45.455 0.00 0.00 0.00 1.40
4489 4712 3.054361 AGGCCTCGGATGAACAGTAAATT 60.054 43.478 0.00 0.00 0.00 1.82
4490 4713 3.312697 GGCCTCGGATGAACAGTAAATTC 59.687 47.826 0.00 0.00 0.00 2.17
4491 4714 3.312697 GCCTCGGATGAACAGTAAATTCC 59.687 47.826 0.00 0.00 0.00 3.01
4492 4715 3.555956 CCTCGGATGAACAGTAAATTCCG 59.444 47.826 2.89 2.89 45.62 4.30
4495 4718 5.539582 CGGATGAACAGTAAATTCCGAAA 57.460 39.130 3.17 0.00 46.84 3.46
4496 4719 5.933790 CGGATGAACAGTAAATTCCGAAAA 58.066 37.500 3.17 0.00 46.84 2.29
4497 4720 6.375377 CGGATGAACAGTAAATTCCGAAAAA 58.625 36.000 3.17 0.00 46.84 1.94
4522 4745 5.131594 ACTACTCCCTTCGAAAGTTGTAC 57.868 43.478 11.99 0.00 29.33 2.90
4525 4748 5.388408 ACTCCCTTCGAAAGTTGTACTAG 57.612 43.478 0.00 0.00 0.00 2.57
4528 4751 5.075493 TCCCTTCGAAAGTTGTACTAGAGT 58.925 41.667 0.00 0.00 0.00 3.24
4531 4754 6.214399 CCTTCGAAAGTTGTACTAGAGTTGT 58.786 40.000 0.00 0.00 0.00 3.32
4541 4764 9.998106 AGTTGTACTAGAGTTGTGACAATTAAT 57.002 29.630 0.00 0.00 0.00 1.40
4548 4771 9.778993 CTAGAGTTGTGACAATTAATTTGGATG 57.221 33.333 0.00 0.00 39.80 3.51
4549 4772 7.092716 AGAGTTGTGACAATTAATTTGGATGC 58.907 34.615 0.00 0.00 39.80 3.91
4551 4774 5.635417 TGTGACAATTAATTTGGATGCGA 57.365 34.783 0.00 0.00 39.80 5.10
4561 4784 7.595819 TTAATTTGGATGCGAAGGGAATAAT 57.404 32.000 0.00 0.00 0.00 1.28
4563 4786 5.930837 TTTGGATGCGAAGGGAATAATTT 57.069 34.783 0.00 0.00 0.00 1.82
4564 4787 5.930837 TTGGATGCGAAGGGAATAATTTT 57.069 34.783 0.00 0.00 0.00 1.82
4630 4853 8.682936 TGTTTTATACACCCATGCAAAATTTT 57.317 26.923 0.00 0.00 0.00 1.82
4756 4989 9.054922 ACAAATGTGATTTCATCCGAAAAATTT 57.945 25.926 0.00 0.00 44.12 1.82
4762 4995 2.323959 TCATCCGAAAAATTTGCACGC 58.676 42.857 0.00 0.00 0.00 5.34
4763 4996 2.057316 CATCCGAAAAATTTGCACGCA 58.943 42.857 0.00 0.00 0.00 5.24
4765 4998 2.057316 TCCGAAAAATTTGCACGCATG 58.943 42.857 0.00 0.00 0.00 4.06
4766 4999 1.791785 CCGAAAAATTTGCACGCATGT 59.208 42.857 0.00 0.00 0.00 3.21
4767 5000 2.983136 CCGAAAAATTTGCACGCATGTA 59.017 40.909 0.00 0.00 0.00 2.29
4768 5001 3.181545 CCGAAAAATTTGCACGCATGTAC 60.182 43.478 0.00 0.00 0.00 2.90
4792 5025 3.323751 AAACATCAATGCTTCTTGCCC 57.676 42.857 0.00 0.00 42.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.527583 GAGGCTGAGGCTGAGGCG 62.528 72.222 20.86 0.00 38.98 5.52
2 3 3.388703 CTGAGGCTGAGGCTGAGGC 62.389 68.421 19.63 19.63 38.98 4.70
3 4 2.901813 CTGAGGCTGAGGCTGAGG 59.098 66.667 15.18 0.00 38.98 3.86
52 53 3.458163 GGACGCCTGGACGGATCA 61.458 66.667 13.50 0.00 37.37 2.92
61 62 0.652592 CAAAAGATAGCGGACGCCTG 59.347 55.000 13.63 0.00 43.17 4.85
87 88 1.000521 ATCCACGGACGGTACCTCA 60.001 57.895 10.90 0.00 0.00 3.86
88 89 1.732308 GATCCACGGACGGTACCTC 59.268 63.158 10.90 6.58 0.00 3.85
159 163 6.312426 CACCATAAGAAAAGAGCAGACAGTAG 59.688 42.308 0.00 0.00 0.00 2.57
171 175 6.690530 TGAAAAGGCATCACCATAAGAAAAG 58.309 36.000 0.00 0.00 43.14 2.27
179 247 4.571919 CAAACATGAAAAGGCATCACCAT 58.428 39.130 0.00 0.00 43.14 3.55
181 249 2.738314 GCAAACATGAAAAGGCATCACC 59.262 45.455 0.00 0.00 39.61 4.02
229 297 7.625498 ACAAAATAATCCCCAGGAAAAGAAA 57.375 32.000 0.00 0.00 34.34 2.52
366 434 0.039617 CCAGCTCGATCGCTAAGAGG 60.040 60.000 11.09 5.17 38.41 3.69
373 444 1.135867 GATTCTTCCAGCTCGATCGC 58.864 55.000 11.09 0.00 0.00 4.58
463 535 7.288810 TGAATGTAGGATTTCAGCAAAAAGT 57.711 32.000 0.00 0.00 0.00 2.66
556 631 5.456763 GGAGAAGGGCATGGTGTATTAGAAT 60.457 44.000 0.00 0.00 0.00 2.40
568 647 0.035056 AGAAACGGGAGAAGGGCATG 60.035 55.000 0.00 0.00 0.00 4.06
597 676 4.670765 AGATGACCTCTTGGCTGAAAATT 58.329 39.130 0.00 0.00 36.63 1.82
598 677 4.313020 AGATGACCTCTTGGCTGAAAAT 57.687 40.909 0.00 0.00 36.63 1.82
602 681 4.287067 AGTTTAAGATGACCTCTTGGCTGA 59.713 41.667 3.47 0.00 44.12 4.26
607 686 5.799213 AGTCCAGTTTAAGATGACCTCTTG 58.201 41.667 3.47 0.00 44.12 3.02
647 726 0.387929 TCTGACGTGGATATTCGGGC 59.612 55.000 0.00 0.00 0.00 6.13
656 735 3.410631 TGCCTAAAAATCTGACGTGGA 57.589 42.857 0.00 0.00 0.00 4.02
659 738 2.423538 GCCATGCCTAAAAATCTGACGT 59.576 45.455 0.00 0.00 0.00 4.34
660 739 2.423185 TGCCATGCCTAAAAATCTGACG 59.577 45.455 0.00 0.00 0.00 4.35
679 763 2.629639 ATGGAAAACGGTCGATTTGC 57.370 45.000 9.76 9.76 0.00 3.68
712 796 5.163764 CGAACTAAATTTGCCATACTCAGCA 60.164 40.000 0.00 0.00 37.18 4.41
758 842 7.446625 AGTTTGTGCAGTATTTTCTCTTGATCT 59.553 33.333 0.00 0.00 0.00 2.75
773 857 0.843984 ACCCCACTAGTTTGTGCAGT 59.156 50.000 0.00 0.00 36.68 4.40
801 885 6.126968 CCAAATAAATTCTTCAGGCCAAGGAT 60.127 38.462 5.01 0.00 0.00 3.24
922 1031 8.623903 GCACCATGTCTTCAAATGAGAATATAA 58.376 33.333 0.00 0.00 0.00 0.98
929 1038 4.713824 ATGCACCATGTCTTCAAATGAG 57.286 40.909 0.00 0.00 0.00 2.90
931 1040 4.992319 ACAAATGCACCATGTCTTCAAATG 59.008 37.500 0.00 0.00 0.00 2.32
1158 1304 0.677414 GAGAAGAGGACGACGAGGGT 60.677 60.000 0.00 0.00 0.00 4.34
1167 1313 2.579738 GGCGGTGGAGAAGAGGAC 59.420 66.667 0.00 0.00 0.00 3.85
1194 1340 1.381327 TGGGTCCGAGGGAGATGAC 60.381 63.158 0.00 0.00 29.39 3.06
1413 1562 2.113986 AGCGGGGCATTATCAGGC 59.886 61.111 0.00 0.00 0.00 4.85
1430 1579 4.823419 CCGCGTTATCCGGTGGCA 62.823 66.667 4.92 0.00 40.84 4.92
1591 1740 3.345808 CGCATAATCCACGGCGGG 61.346 66.667 13.24 7.16 45.27 6.13
2004 2153 0.741221 GGTACTGGTACTGCTGCTGC 60.741 60.000 8.89 8.89 36.36 5.25
2005 2154 0.608130 TGGTACTGGTACTGCTGCTG 59.392 55.000 10.19 4.89 36.36 4.41
2006 2155 0.898320 CTGGTACTGGTACTGCTGCT 59.102 55.000 10.19 0.00 36.36 4.24
2007 2156 0.741221 GCTGGTACTGGTACTGCTGC 60.741 60.000 10.19 0.00 36.36 5.25
2008 2157 0.608130 TGCTGGTACTGGTACTGCTG 59.392 55.000 19.97 0.00 36.88 4.41
2474 2649 2.489971 TGCCGTTCAAGAAGTTGGTAG 58.510 47.619 0.00 0.00 34.09 3.18
2478 2653 2.664916 CCATTGCCGTTCAAGAAGTTG 58.335 47.619 0.00 0.00 38.22 3.16
2494 2675 0.324943 AGACGCACCAGTAAGCCATT 59.675 50.000 0.00 0.00 0.00 3.16
2501 2682 3.056107 AGAGCAATTTAGACGCACCAGTA 60.056 43.478 0.00 0.00 0.00 2.74
2504 2685 2.076100 CAGAGCAATTTAGACGCACCA 58.924 47.619 0.00 0.00 0.00 4.17
2522 2703 4.437587 CCCCCTCCCTGCAAGCAG 62.438 72.222 14.91 14.91 43.26 4.24
2602 2788 3.741388 GCTTACAATCCTCGTGCAGGTAT 60.741 47.826 6.26 0.00 43.95 2.73
2624 2810 3.999229 CGTAGGAGCAAAGTTAAGCAG 57.001 47.619 3.43 0.00 0.00 4.24
2640 2826 2.818432 ACACCAACAGAGTACTCCGTAG 59.182 50.000 19.38 12.41 0.00 3.51
2642 2828 1.340248 CACACCAACAGAGTACTCCGT 59.660 52.381 19.38 12.75 0.00 4.69
2643 2829 1.340248 ACACACCAACAGAGTACTCCG 59.660 52.381 19.38 12.02 0.00 4.63
2645 2831 3.454371 ACACACACCAACAGAGTACTC 57.546 47.619 15.41 15.41 0.00 2.59
2646 2832 3.531538 CAACACACACCAACAGAGTACT 58.468 45.455 0.00 0.00 0.00 2.73
2649 2835 1.681780 CCCAACACACACCAACAGAGT 60.682 52.381 0.00 0.00 0.00 3.24
2652 2838 1.135141 CAACCCAACACACACCAACAG 60.135 52.381 0.00 0.00 0.00 3.16
2654 2840 1.178276 TCAACCCAACACACACCAAC 58.822 50.000 0.00 0.00 0.00 3.77
2671 2857 9.414295 CAATGAGAAATTCAGCTGTAAATTTCA 57.586 29.630 33.23 24.04 46.79 2.69
2679 2865 4.333690 AGAGCAATGAGAAATTCAGCTGT 58.666 39.130 14.67 0.00 37.43 4.40
2693 2879 2.805671 TGTACAACAACCGAGAGCAATG 59.194 45.455 0.00 0.00 0.00 2.82
2694 2880 3.120321 TGTACAACAACCGAGAGCAAT 57.880 42.857 0.00 0.00 0.00 3.56
2695 2881 2.605837 TGTACAACAACCGAGAGCAA 57.394 45.000 0.00 0.00 0.00 3.91
2700 2886 4.562082 TGACCTATTGTACAACAACCGAG 58.438 43.478 11.22 1.98 41.40 4.63
2702 2888 4.331717 GGATGACCTATTGTACAACAACCG 59.668 45.833 11.22 0.00 41.40 4.44
2797 2995 3.808728 TCAGCTTTGCAGTGTAAGAAGT 58.191 40.909 10.23 0.00 0.00 3.01
2798 2996 4.274459 AGTTCAGCTTTGCAGTGTAAGAAG 59.726 41.667 10.23 0.81 0.00 2.85
2799 2997 4.035558 CAGTTCAGCTTTGCAGTGTAAGAA 59.964 41.667 10.23 1.43 0.00 2.52
2800 2998 3.561310 CAGTTCAGCTTTGCAGTGTAAGA 59.439 43.478 10.23 0.00 0.00 2.10
2802 3000 2.033299 GCAGTTCAGCTTTGCAGTGTAA 59.967 45.455 4.82 0.00 37.75 2.41
2803 3001 1.603802 GCAGTTCAGCTTTGCAGTGTA 59.396 47.619 4.82 0.00 37.75 2.90
2804 3002 0.383231 GCAGTTCAGCTTTGCAGTGT 59.617 50.000 4.82 0.00 37.75 3.55
2805 3003 0.318445 GGCAGTTCAGCTTTGCAGTG 60.318 55.000 10.35 0.00 39.54 3.66
2806 3004 1.789078 CGGCAGTTCAGCTTTGCAGT 61.789 55.000 10.35 0.00 39.54 4.40
2807 3005 1.081641 CGGCAGTTCAGCTTTGCAG 60.082 57.895 10.35 4.04 39.54 4.41
2810 3008 0.877071 ATCACGGCAGTTCAGCTTTG 59.123 50.000 0.00 0.00 34.17 2.77
2811 3009 1.160137 GATCACGGCAGTTCAGCTTT 58.840 50.000 0.00 0.00 34.17 3.51
2812 3010 0.322975 AGATCACGGCAGTTCAGCTT 59.677 50.000 0.00 0.00 34.17 3.74
2813 3011 0.108424 GAGATCACGGCAGTTCAGCT 60.108 55.000 0.00 0.00 34.17 4.24
2814 3012 0.108424 AGAGATCACGGCAGTTCAGC 60.108 55.000 0.00 0.00 0.00 4.26
2815 3013 1.476085 AGAGAGATCACGGCAGTTCAG 59.524 52.381 0.00 0.00 0.00 3.02
2817 3015 1.474478 TCAGAGAGATCACGGCAGTTC 59.526 52.381 0.00 0.00 0.00 3.01
2818 3016 1.550327 TCAGAGAGATCACGGCAGTT 58.450 50.000 0.00 0.00 0.00 3.16
2819 3017 1.550327 TTCAGAGAGATCACGGCAGT 58.450 50.000 0.00 0.00 0.00 4.40
2820 3018 2.886862 ATTCAGAGAGATCACGGCAG 57.113 50.000 0.00 0.00 0.00 4.85
2821 3019 4.736126 TTTATTCAGAGAGATCACGGCA 57.264 40.909 0.00 0.00 0.00 5.69
2822 3020 4.450419 CCATTTATTCAGAGAGATCACGGC 59.550 45.833 0.00 0.00 0.00 5.68
2824 3022 6.368243 CCATCCATTTATTCAGAGAGATCACG 59.632 42.308 0.00 0.00 0.00 4.35
2827 3025 9.956640 ATTACCATCCATTTATTCAGAGAGATC 57.043 33.333 0.00 0.00 0.00 2.75
2828 3026 9.736414 CATTACCATCCATTTATTCAGAGAGAT 57.264 33.333 0.00 0.00 0.00 2.75
2832 3030 9.123902 TGAACATTACCATCCATTTATTCAGAG 57.876 33.333 0.00 0.00 0.00 3.35
2850 3048 6.422701 CAGGTTTCGTCAGTAACTGAACATTA 59.577 38.462 0.00 0.00 42.46 1.90
2851 3049 5.236478 CAGGTTTCGTCAGTAACTGAACATT 59.764 40.000 0.00 0.00 42.46 2.71
2880 3094 2.201732 CCTGGATTACGATGAACACGG 58.798 52.381 0.00 0.00 34.93 4.94
2981 3195 7.755591 TGAATGAGTCTGCAAAGATGATTTAC 58.244 34.615 0.00 0.00 0.00 2.01
3036 3252 3.061006 GCGCAAACAGAGTTTTGACAATG 60.061 43.478 0.30 0.00 38.54 2.82
3056 3278 1.070577 CCTGTTCGTTTTCAGTCAGCG 60.071 52.381 0.00 0.00 0.00 5.18
3058 3280 4.369182 AGTACCTGTTCGTTTTCAGTCAG 58.631 43.478 0.00 0.00 0.00 3.51
3239 3461 2.668889 GTCAGTGCTGCTGCTGCT 60.669 61.111 27.67 11.56 44.66 4.24
3253 3475 0.038067 GTGGCATTGCATTGCAGTCA 60.038 50.000 28.93 17.89 44.59 3.41
3254 3476 0.245539 AGTGGCATTGCATTGCAGTC 59.754 50.000 28.93 19.35 44.59 3.51
3255 3477 0.037697 CAGTGGCATTGCATTGCAGT 60.038 50.000 28.93 17.37 44.59 4.40
3256 3478 0.037697 ACAGTGGCATTGCATTGCAG 60.038 50.000 28.93 19.14 44.59 4.41
3257 3479 1.254954 TACAGTGGCATTGCATTGCA 58.745 45.000 28.93 7.38 44.59 4.08
3268 3490 0.530744 TCAGTGACGGATACAGTGGC 59.469 55.000 0.00 0.00 38.67 5.01
3485 3707 4.424566 TTCCTCGCCCGCACGTAC 62.425 66.667 0.00 0.00 0.00 3.67
3520 3742 3.385111 AGGCTCCATCGAAGGTTAGTTAG 59.615 47.826 6.57 0.00 0.00 2.34
3536 3758 2.435059 GAGACGTTGCCAGGCTCC 60.435 66.667 14.15 1.58 0.00 4.70
3663 3885 2.032634 GGCGGCGTTGAACATCTGA 61.033 57.895 9.37 0.00 0.00 3.27
3799 4021 4.815846 GCTCTCATGGATCCTTTTCTTCTC 59.184 45.833 14.23 0.00 0.00 2.87
3805 4027 3.022406 GCAAGCTCTCATGGATCCTTTT 58.978 45.455 14.23 0.00 0.00 2.27
3881 4104 5.738619 ATGGGGTAAAAAGTGGAATTCAC 57.261 39.130 7.93 4.02 46.39 3.18
3882 4105 8.442660 AAATATGGGGTAAAAAGTGGAATTCA 57.557 30.769 7.93 0.00 0.00 2.57
3886 4109 9.992442 TGTATAAATATGGGGTAAAAAGTGGAA 57.008 29.630 0.00 0.00 0.00 3.53
3893 4116 9.848710 TCACGAATGTATAAATATGGGGTAAAA 57.151 29.630 0.00 0.00 0.00 1.52
3894 4117 9.275398 GTCACGAATGTATAAATATGGGGTAAA 57.725 33.333 0.00 0.00 0.00 2.01
3895 4118 8.430431 TGTCACGAATGTATAAATATGGGGTAA 58.570 33.333 0.00 0.00 0.00 2.85
3896 4119 7.874016 GTGTCACGAATGTATAAATATGGGGTA 59.126 37.037 0.00 0.00 0.00 3.69
3897 4120 6.708949 GTGTCACGAATGTATAAATATGGGGT 59.291 38.462 0.00 0.00 0.00 4.95
3898 4121 6.934645 AGTGTCACGAATGTATAAATATGGGG 59.065 38.462 0.00 0.00 0.00 4.96
3899 4122 7.962964 AGTGTCACGAATGTATAAATATGGG 57.037 36.000 0.00 0.00 0.00 4.00
3905 4128 9.316730 GGGTAATTAGTGTCACGAATGTATAAA 57.683 33.333 11.50 0.00 0.00 1.40
3906 4129 7.927629 GGGGTAATTAGTGTCACGAATGTATAA 59.072 37.037 11.50 0.00 0.00 0.98
3907 4130 7.288389 AGGGGTAATTAGTGTCACGAATGTATA 59.712 37.037 11.50 0.00 0.00 1.47
3908 4131 6.099269 AGGGGTAATTAGTGTCACGAATGTAT 59.901 38.462 11.50 0.43 0.00 2.29
3909 4132 5.422970 AGGGGTAATTAGTGTCACGAATGTA 59.577 40.000 11.50 4.92 0.00 2.29
3910 4133 4.224370 AGGGGTAATTAGTGTCACGAATGT 59.776 41.667 11.50 5.71 0.00 2.71
3911 4134 4.766375 AGGGGTAATTAGTGTCACGAATG 58.234 43.478 11.50 0.00 0.00 2.67
3912 4135 5.425630 GAAGGGGTAATTAGTGTCACGAAT 58.574 41.667 5.57 5.57 0.00 3.34
3913 4136 4.618927 CGAAGGGGTAATTAGTGTCACGAA 60.619 45.833 0.72 0.72 0.00 3.85
3914 4137 3.119388 CGAAGGGGTAATTAGTGTCACGA 60.119 47.826 0.00 0.00 0.00 4.35
3915 4138 3.119388 TCGAAGGGGTAATTAGTGTCACG 60.119 47.826 0.00 0.00 0.00 4.35
3916 4139 4.081807 ACTCGAAGGGGTAATTAGTGTCAC 60.082 45.833 0.00 0.00 0.00 3.67
3917 4140 4.081862 CACTCGAAGGGGTAATTAGTGTCA 60.082 45.833 0.00 0.00 0.00 3.58
3918 4141 4.159135 TCACTCGAAGGGGTAATTAGTGTC 59.841 45.833 0.00 0.00 35.51 3.67
3919 4142 4.091549 TCACTCGAAGGGGTAATTAGTGT 58.908 43.478 0.00 0.00 35.51 3.55
3920 4143 4.730949 TCACTCGAAGGGGTAATTAGTG 57.269 45.455 0.00 0.00 35.36 2.74
3921 4144 5.750352 TTTCACTCGAAGGGGTAATTAGT 57.250 39.130 0.00 0.00 31.28 2.24
3922 4145 7.465513 CGAATTTTCACTCGAAGGGGTAATTAG 60.466 40.741 0.00 0.00 37.23 1.73
3923 4146 6.314400 CGAATTTTCACTCGAAGGGGTAATTA 59.686 38.462 0.00 0.00 37.23 1.40
3924 4147 5.123344 CGAATTTTCACTCGAAGGGGTAATT 59.877 40.000 0.00 0.00 37.23 1.40
3925 4148 4.634443 CGAATTTTCACTCGAAGGGGTAAT 59.366 41.667 0.00 0.00 37.23 1.89
3926 4149 3.998341 CGAATTTTCACTCGAAGGGGTAA 59.002 43.478 0.00 0.00 37.23 2.85
3927 4150 3.007182 ACGAATTTTCACTCGAAGGGGTA 59.993 43.478 0.00 0.00 38.43 3.69
3928 4151 2.224450 ACGAATTTTCACTCGAAGGGGT 60.224 45.455 0.00 0.00 38.43 4.95
3929 4152 2.415512 GACGAATTTTCACTCGAAGGGG 59.584 50.000 0.00 0.00 38.43 4.79
3930 4153 3.326747 AGACGAATTTTCACTCGAAGGG 58.673 45.455 0.00 0.00 38.43 3.95
3931 4154 5.399858 TCTAGACGAATTTTCACTCGAAGG 58.600 41.667 0.00 0.00 38.43 3.46
3932 4155 6.929587 TTCTAGACGAATTTTCACTCGAAG 57.070 37.500 0.00 0.00 38.43 3.79
3933 4156 9.234384 GATATTCTAGACGAATTTTCACTCGAA 57.766 33.333 0.00 0.00 42.26 3.71
3934 4157 7.861372 GGATATTCTAGACGAATTTTCACTCGA 59.139 37.037 0.00 0.00 42.26 4.04
3935 4158 7.115095 GGGATATTCTAGACGAATTTTCACTCG 59.885 40.741 0.00 0.00 42.26 4.18
3936 4159 8.145122 AGGGATATTCTAGACGAATTTTCACTC 58.855 37.037 0.00 0.00 42.26 3.51
3937 4160 8.024145 AGGGATATTCTAGACGAATTTTCACT 57.976 34.615 0.00 0.00 42.26 3.41
3938 4161 8.664211 AAGGGATATTCTAGACGAATTTTCAC 57.336 34.615 0.00 0.00 42.26 3.18
3939 4162 9.681062 AAAAGGGATATTCTAGACGAATTTTCA 57.319 29.630 0.00 0.00 42.26 2.69
3940 4163 9.937175 CAAAAGGGATATTCTAGACGAATTTTC 57.063 33.333 0.00 0.00 42.26 2.29
3941 4164 9.681062 TCAAAAGGGATATTCTAGACGAATTTT 57.319 29.630 0.00 0.00 42.26 1.82
3942 4165 9.681062 TTCAAAAGGGATATTCTAGACGAATTT 57.319 29.630 0.00 0.00 42.26 1.82
3943 4166 9.681062 TTTCAAAAGGGATATTCTAGACGAATT 57.319 29.630 0.00 0.00 42.26 2.17
3944 4167 9.853177 ATTTCAAAAGGGATATTCTAGACGAAT 57.147 29.630 0.00 0.00 44.35 3.34
3945 4168 9.326413 GATTTCAAAAGGGATATTCTAGACGAA 57.674 33.333 0.00 0.00 35.78 3.85
3946 4169 8.705594 AGATTTCAAAAGGGATATTCTAGACGA 58.294 33.333 0.00 0.00 0.00 4.20
3947 4170 8.894768 AGATTTCAAAAGGGATATTCTAGACG 57.105 34.615 0.00 0.00 0.00 4.18
3951 4174 9.989296 TCCAAAGATTTCAAAAGGGATATTCTA 57.011 29.630 0.00 0.00 0.00 2.10
3952 4175 8.753133 GTCCAAAGATTTCAAAAGGGATATTCT 58.247 33.333 0.00 0.00 0.00 2.40
3953 4176 7.981789 GGTCCAAAGATTTCAAAAGGGATATTC 59.018 37.037 0.00 0.00 0.00 1.75
3954 4177 7.092891 GGGTCCAAAGATTTCAAAAGGGATATT 60.093 37.037 0.00 0.00 0.00 1.28
3955 4178 6.384015 GGGTCCAAAGATTTCAAAAGGGATAT 59.616 38.462 0.00 0.00 0.00 1.63
3956 4179 5.719563 GGGTCCAAAGATTTCAAAAGGGATA 59.280 40.000 0.00 0.00 0.00 2.59
3957 4180 4.532126 GGGTCCAAAGATTTCAAAAGGGAT 59.468 41.667 0.00 0.00 0.00 3.85
3958 4181 3.901222 GGGTCCAAAGATTTCAAAAGGGA 59.099 43.478 0.00 0.00 0.00 4.20
3959 4182 3.903714 AGGGTCCAAAGATTTCAAAAGGG 59.096 43.478 0.00 0.00 0.00 3.95
3960 4183 5.163311 ACAAGGGTCCAAAGATTTCAAAAGG 60.163 40.000 0.00 0.00 0.00 3.11
3961 4184 5.917462 ACAAGGGTCCAAAGATTTCAAAAG 58.083 37.500 0.00 0.00 0.00 2.27
3962 4185 5.948742 ACAAGGGTCCAAAGATTTCAAAA 57.051 34.783 0.00 0.00 0.00 2.44
3963 4186 5.948742 AACAAGGGTCCAAAGATTTCAAA 57.051 34.783 0.00 0.00 0.00 2.69
3964 4187 5.948742 AAACAAGGGTCCAAAGATTTCAA 57.051 34.783 0.00 0.00 0.00 2.69
3965 4188 5.948742 AAAACAAGGGTCCAAAGATTTCA 57.051 34.783 0.00 0.00 0.00 2.69
3985 4208 2.228582 CCTGATGGACACGCATCAAAAA 59.771 45.455 0.00 0.00 37.37 1.94
3986 4209 1.811965 CCTGATGGACACGCATCAAAA 59.188 47.619 0.00 0.00 37.37 2.44
3987 4210 1.271325 ACCTGATGGACACGCATCAAA 60.271 47.619 0.00 0.00 37.37 2.69
3988 4211 0.324614 ACCTGATGGACACGCATCAA 59.675 50.000 0.00 0.00 37.37 2.57
3989 4212 1.190643 TACCTGATGGACACGCATCA 58.809 50.000 0.00 0.00 36.52 3.07
3990 4213 2.205074 CTTACCTGATGGACACGCATC 58.795 52.381 0.00 0.00 37.04 3.91
3991 4214 1.134401 CCTTACCTGATGGACACGCAT 60.134 52.381 0.00 0.00 37.04 4.73
3992 4215 0.249120 CCTTACCTGATGGACACGCA 59.751 55.000 0.00 0.00 37.04 5.24
3993 4216 0.249398 ACCTTACCTGATGGACACGC 59.751 55.000 0.00 0.00 37.04 5.34
3994 4217 1.275291 ACACCTTACCTGATGGACACG 59.725 52.381 0.00 0.00 37.04 4.49
3995 4218 2.301870 TCACACCTTACCTGATGGACAC 59.698 50.000 0.00 0.00 37.04 3.67
3996 4219 2.567169 CTCACACCTTACCTGATGGACA 59.433 50.000 0.00 0.00 37.04 4.02
3997 4220 2.093447 CCTCACACCTTACCTGATGGAC 60.093 54.545 0.00 0.00 37.04 4.02
3998 4221 2.187958 CCTCACACCTTACCTGATGGA 58.812 52.381 0.00 0.00 37.04 3.41
3999 4222 1.909302 ACCTCACACCTTACCTGATGG 59.091 52.381 0.00 0.00 39.83 3.51
4000 4223 2.567169 TCACCTCACACCTTACCTGATG 59.433 50.000 0.00 0.00 0.00 3.07
4001 4224 2.902608 TCACCTCACACCTTACCTGAT 58.097 47.619 0.00 0.00 0.00 2.90
4002 4225 2.391926 TCACCTCACACCTTACCTGA 57.608 50.000 0.00 0.00 0.00 3.86
4003 4226 2.936993 GCATCACCTCACACCTTACCTG 60.937 54.545 0.00 0.00 0.00 4.00
4004 4227 1.279271 GCATCACCTCACACCTTACCT 59.721 52.381 0.00 0.00 0.00 3.08
4005 4228 1.679032 GGCATCACCTCACACCTTACC 60.679 57.143 0.00 0.00 34.51 2.85
4006 4229 1.679032 GGGCATCACCTCACACCTTAC 60.679 57.143 0.00 0.00 39.10 2.34
4007 4230 0.618458 GGGCATCACCTCACACCTTA 59.382 55.000 0.00 0.00 39.10 2.69
4008 4231 1.136329 AGGGCATCACCTCACACCTT 61.136 55.000 0.00 0.00 35.43 3.50
4009 4232 1.539869 AGGGCATCACCTCACACCT 60.540 57.895 0.00 0.00 35.43 4.00
4010 4233 1.377725 CAGGGCATCACCTCACACC 60.378 63.158 0.00 0.00 39.34 4.16
4011 4234 0.613260 TACAGGGCATCACCTCACAC 59.387 55.000 0.00 0.00 39.34 3.82
4012 4235 1.486310 GATACAGGGCATCACCTCACA 59.514 52.381 0.00 0.00 39.34 3.58
4013 4236 1.202698 GGATACAGGGCATCACCTCAC 60.203 57.143 0.00 0.00 39.34 3.51
4014 4237 1.131638 GGATACAGGGCATCACCTCA 58.868 55.000 0.00 0.00 39.34 3.86
4015 4238 1.131638 TGGATACAGGGCATCACCTC 58.868 55.000 0.00 0.00 46.17 3.85
4016 4239 3.340064 TGGATACAGGGCATCACCT 57.660 52.632 0.00 0.00 46.17 4.00
4028 4251 3.672241 GCCGTCCACATGTTTTTGGATAC 60.672 47.826 6.10 0.00 43.85 2.24
4029 4252 2.490115 GCCGTCCACATGTTTTTGGATA 59.510 45.455 6.10 0.00 43.85 2.59
4030 4253 1.272212 GCCGTCCACATGTTTTTGGAT 59.728 47.619 6.10 0.00 43.85 3.41
4031 4254 0.671251 GCCGTCCACATGTTTTTGGA 59.329 50.000 0.00 0.00 39.72 3.53
4032 4255 0.319469 GGCCGTCCACATGTTTTTGG 60.319 55.000 0.00 0.00 0.00 3.28
4033 4256 0.387202 TGGCCGTCCACATGTTTTTG 59.613 50.000 0.00 0.00 37.47 2.44
4034 4257 2.814023 TGGCCGTCCACATGTTTTT 58.186 47.368 0.00 0.00 37.47 1.94
4035 4258 4.589046 TGGCCGTCCACATGTTTT 57.411 50.000 0.00 0.00 37.47 2.43
4043 4266 2.847234 ACTCCTTGTGGCCGTCCA 60.847 61.111 0.00 0.00 40.85 4.02
4044 4267 2.358737 CACTCCTTGTGGCCGTCC 60.359 66.667 0.00 0.00 42.68 4.79
4051 4274 3.866651 CCTATCTGTTCCACTCCTTGTG 58.133 50.000 0.00 0.00 45.80 3.33
4052 4275 2.237392 GCCTATCTGTTCCACTCCTTGT 59.763 50.000 0.00 0.00 0.00 3.16
4053 4276 2.237143 TGCCTATCTGTTCCACTCCTTG 59.763 50.000 0.00 0.00 0.00 3.61
4054 4277 2.551270 TGCCTATCTGTTCCACTCCTT 58.449 47.619 0.00 0.00 0.00 3.36
4055 4278 2.254152 TGCCTATCTGTTCCACTCCT 57.746 50.000 0.00 0.00 0.00 3.69
4056 4279 2.501723 TCTTGCCTATCTGTTCCACTCC 59.498 50.000 0.00 0.00 0.00 3.85
4057 4280 3.449018 TCTCTTGCCTATCTGTTCCACTC 59.551 47.826 0.00 0.00 0.00 3.51
4058 4281 3.445008 TCTCTTGCCTATCTGTTCCACT 58.555 45.455 0.00 0.00 0.00 4.00
4059 4282 3.895232 TCTCTTGCCTATCTGTTCCAC 57.105 47.619 0.00 0.00 0.00 4.02
4060 4283 3.369892 GCTTCTCTTGCCTATCTGTTCCA 60.370 47.826 0.00 0.00 0.00 3.53
4061 4284 3.118445 AGCTTCTCTTGCCTATCTGTTCC 60.118 47.826 0.00 0.00 0.00 3.62
4062 4285 4.135747 AGCTTCTCTTGCCTATCTGTTC 57.864 45.455 0.00 0.00 0.00 3.18
4063 4286 4.260170 CAAGCTTCTCTTGCCTATCTGTT 58.740 43.478 0.00 0.00 44.85 3.16
4064 4287 3.871485 CAAGCTTCTCTTGCCTATCTGT 58.129 45.455 0.00 0.00 44.85 3.41
4074 4297 3.594134 CGATCTTGTCCAAGCTTCTCTT 58.406 45.455 0.00 0.00 38.28 2.85
4075 4298 2.676463 GCGATCTTGTCCAAGCTTCTCT 60.676 50.000 0.00 0.00 38.28 3.10
4076 4299 1.663135 GCGATCTTGTCCAAGCTTCTC 59.337 52.381 0.00 0.00 38.28 2.87
4077 4300 1.677217 GGCGATCTTGTCCAAGCTTCT 60.677 52.381 0.00 0.00 38.28 2.85
4078 4301 0.729690 GGCGATCTTGTCCAAGCTTC 59.270 55.000 0.00 1.93 38.28 3.86
4079 4302 0.036732 TGGCGATCTTGTCCAAGCTT 59.963 50.000 0.00 0.00 38.28 3.74
4080 4303 0.036732 TTGGCGATCTTGTCCAAGCT 59.963 50.000 2.09 0.00 38.28 3.74
4081 4304 1.098050 ATTGGCGATCTTGTCCAAGC 58.902 50.000 2.09 0.00 42.43 4.01
4082 4305 2.358957 TCATTGGCGATCTTGTCCAAG 58.641 47.619 0.47 0.47 42.43 3.61
4083 4306 2.488204 TCATTGGCGATCTTGTCCAA 57.512 45.000 7.67 7.67 43.20 3.53
4084 4307 2.291365 CATCATTGGCGATCTTGTCCA 58.709 47.619 0.00 0.00 0.00 4.02
4085 4308 1.002033 GCATCATTGGCGATCTTGTCC 60.002 52.381 0.00 0.00 0.00 4.02
4086 4309 1.002033 GGCATCATTGGCGATCTTGTC 60.002 52.381 0.00 0.00 38.79 3.18
4087 4310 1.027357 GGCATCATTGGCGATCTTGT 58.973 50.000 0.00 0.00 38.79 3.16
4088 4311 3.859650 GGCATCATTGGCGATCTTG 57.140 52.632 0.00 0.00 38.79 3.02
4096 4319 0.607489 GGATCGGAGGGCATCATTGG 60.607 60.000 0.08 0.00 0.00 3.16
4097 4320 0.399454 AGGATCGGAGGGCATCATTG 59.601 55.000 0.08 0.00 0.00 2.82
4098 4321 1.143813 AAGGATCGGAGGGCATCATT 58.856 50.000 0.08 0.00 0.00 2.57
4099 4322 1.625818 GTAAGGATCGGAGGGCATCAT 59.374 52.381 0.08 0.00 0.00 2.45
4100 4323 1.048601 GTAAGGATCGGAGGGCATCA 58.951 55.000 0.08 0.00 0.00 3.07
4101 4324 1.001406 CTGTAAGGATCGGAGGGCATC 59.999 57.143 0.00 0.00 0.00 3.91
4102 4325 1.051812 CTGTAAGGATCGGAGGGCAT 58.948 55.000 0.00 0.00 0.00 4.40
4103 4326 0.325296 ACTGTAAGGATCGGAGGGCA 60.325 55.000 0.00 0.00 39.30 5.36
4104 4327 0.831307 AACTGTAAGGATCGGAGGGC 59.169 55.000 0.00 0.00 39.30 5.19
4105 4328 3.629142 AAAACTGTAAGGATCGGAGGG 57.371 47.619 0.00 0.00 39.30 4.30
4126 4349 5.511571 TGTTGCGTCATTGATTCGTAAAAA 58.488 33.333 2.65 0.00 32.13 1.94
4127 4350 5.096954 TGTTGCGTCATTGATTCGTAAAA 57.903 34.783 2.65 0.00 32.13 1.52
4128 4351 4.733972 TGTTGCGTCATTGATTCGTAAA 57.266 36.364 2.65 0.00 32.13 2.01
4129 4352 4.153296 ACATGTTGCGTCATTGATTCGTAA 59.847 37.500 0.00 0.00 0.00 3.18
4130 4353 3.682377 ACATGTTGCGTCATTGATTCGTA 59.318 39.130 0.00 0.00 0.00 3.43
4131 4354 2.483877 ACATGTTGCGTCATTGATTCGT 59.516 40.909 0.00 0.00 0.00 3.85
4132 4355 3.093574 GACATGTTGCGTCATTGATTCG 58.906 45.455 0.00 0.00 33.43 3.34
4133 4356 3.093574 CGACATGTTGCGTCATTGATTC 58.906 45.455 0.00 0.00 32.72 2.52
4134 4357 2.741517 TCGACATGTTGCGTCATTGATT 59.258 40.909 8.34 0.00 32.72 2.57
4135 4358 2.345876 TCGACATGTTGCGTCATTGAT 58.654 42.857 8.34 0.00 32.72 2.57
4136 4359 1.789506 TCGACATGTTGCGTCATTGA 58.210 45.000 8.34 0.00 32.72 2.57
4137 4360 2.537529 GGATCGACATGTTGCGTCATTG 60.538 50.000 8.34 0.00 32.72 2.82
4138 4361 1.665679 GGATCGACATGTTGCGTCATT 59.334 47.619 8.34 0.00 32.72 2.57
4139 4362 1.134699 AGGATCGACATGTTGCGTCAT 60.135 47.619 8.34 4.18 32.72 3.06
4140 4363 0.246360 AGGATCGACATGTTGCGTCA 59.754 50.000 8.34 0.00 32.72 4.35
4141 4364 2.203800 TAGGATCGACATGTTGCGTC 57.796 50.000 8.34 8.66 0.00 5.19
4142 4365 2.743938 GATAGGATCGACATGTTGCGT 58.256 47.619 8.34 0.00 0.00 5.24
4154 4377 7.548196 TTGTTTGTTTATGGTCGATAGGATC 57.452 36.000 0.00 0.00 0.00 3.36
4155 4378 7.931578 TTTGTTTGTTTATGGTCGATAGGAT 57.068 32.000 0.00 0.00 0.00 3.24
4156 4379 7.747155 TTTTGTTTGTTTATGGTCGATAGGA 57.253 32.000 0.00 0.00 0.00 2.94
4157 4380 8.026607 ACATTTTGTTTGTTTATGGTCGATAGG 58.973 33.333 0.00 0.00 0.00 2.57
4158 4381 8.964420 ACATTTTGTTTGTTTATGGTCGATAG 57.036 30.769 0.00 0.00 0.00 2.08
4160 4383 9.751542 TTTACATTTTGTTTGTTTATGGTCGAT 57.248 25.926 0.00 0.00 0.00 3.59
4161 4384 9.582431 TTTTACATTTTGTTTGTTTATGGTCGA 57.418 25.926 0.00 0.00 0.00 4.20
4162 4385 9.626332 GTTTTACATTTTGTTTGTTTATGGTCG 57.374 29.630 0.00 0.00 0.00 4.79
4165 4388 9.928236 CCAGTTTTACATTTTGTTTGTTTATGG 57.072 29.630 0.00 0.00 0.00 2.74
4166 4389 9.928236 CCCAGTTTTACATTTTGTTTGTTTATG 57.072 29.630 0.00 0.00 0.00 1.90
4167 4390 9.892130 TCCCAGTTTTACATTTTGTTTGTTTAT 57.108 25.926 0.00 0.00 0.00 1.40
4168 4391 9.892130 ATCCCAGTTTTACATTTTGTTTGTTTA 57.108 25.926 0.00 0.00 0.00 2.01
4169 4392 8.800370 ATCCCAGTTTTACATTTTGTTTGTTT 57.200 26.923 0.00 0.00 0.00 2.83
4170 4393 9.892130 TTATCCCAGTTTTACATTTTGTTTGTT 57.108 25.926 0.00 0.00 0.00 2.83
4171 4394 9.892130 TTTATCCCAGTTTTACATTTTGTTTGT 57.108 25.926 0.00 0.00 0.00 2.83
4174 4397 9.332502 GGTTTTATCCCAGTTTTACATTTTGTT 57.667 29.630 0.00 0.00 0.00 2.83
4175 4398 7.654116 CGGTTTTATCCCAGTTTTACATTTTGT 59.346 33.333 0.00 0.00 0.00 2.83
4176 4399 7.654116 ACGGTTTTATCCCAGTTTTACATTTTG 59.346 33.333 0.00 0.00 0.00 2.44
4177 4400 7.728148 ACGGTTTTATCCCAGTTTTACATTTT 58.272 30.769 0.00 0.00 0.00 1.82
4178 4401 7.231925 AGACGGTTTTATCCCAGTTTTACATTT 59.768 33.333 0.00 0.00 0.00 2.32
4179 4402 6.717997 AGACGGTTTTATCCCAGTTTTACATT 59.282 34.615 0.00 0.00 0.00 2.71
4180 4403 6.243148 AGACGGTTTTATCCCAGTTTTACAT 58.757 36.000 0.00 0.00 0.00 2.29
4181 4404 5.623169 AGACGGTTTTATCCCAGTTTTACA 58.377 37.500 0.00 0.00 0.00 2.41
4182 4405 6.564709 AAGACGGTTTTATCCCAGTTTTAC 57.435 37.500 0.00 0.00 0.00 2.01
4183 4406 8.688747 TTTAAGACGGTTTTATCCCAGTTTTA 57.311 30.769 0.00 0.00 0.00 1.52
4184 4407 7.585579 TTTAAGACGGTTTTATCCCAGTTTT 57.414 32.000 0.00 0.00 0.00 2.43
4185 4408 7.286087 ACTTTTAAGACGGTTTTATCCCAGTTT 59.714 33.333 0.00 0.00 0.00 2.66
4186 4409 6.774170 ACTTTTAAGACGGTTTTATCCCAGTT 59.226 34.615 0.00 0.00 0.00 3.16
4187 4410 6.301486 ACTTTTAAGACGGTTTTATCCCAGT 58.699 36.000 0.00 0.00 0.00 4.00
4188 4411 6.653740 AGACTTTTAAGACGGTTTTATCCCAG 59.346 38.462 0.00 0.00 0.00 4.45
4189 4412 6.536447 AGACTTTTAAGACGGTTTTATCCCA 58.464 36.000 0.00 0.00 0.00 4.37
4190 4413 6.093219 GGAGACTTTTAAGACGGTTTTATCCC 59.907 42.308 0.00 0.00 0.00 3.85
4191 4414 6.652062 TGGAGACTTTTAAGACGGTTTTATCC 59.348 38.462 0.00 0.00 0.00 2.59
4192 4415 7.662604 TGGAGACTTTTAAGACGGTTTTATC 57.337 36.000 0.00 0.00 0.00 1.75
4193 4416 8.454570 TTTGGAGACTTTTAAGACGGTTTTAT 57.545 30.769 0.00 0.00 0.00 1.40
4194 4417 7.862512 TTTGGAGACTTTTAAGACGGTTTTA 57.137 32.000 0.00 0.00 0.00 1.52
4195 4418 6.762702 TTTGGAGACTTTTAAGACGGTTTT 57.237 33.333 0.00 0.00 0.00 2.43
4196 4419 6.762702 TTTTGGAGACTTTTAAGACGGTTT 57.237 33.333 0.00 0.00 0.00 3.27
4197 4420 6.771267 AGATTTTGGAGACTTTTAAGACGGTT 59.229 34.615 0.00 0.00 0.00 4.44
4198 4421 6.204882 CAGATTTTGGAGACTTTTAAGACGGT 59.795 38.462 0.00 0.00 0.00 4.83
4199 4422 6.426937 TCAGATTTTGGAGACTTTTAAGACGG 59.573 38.462 0.00 0.00 0.00 4.79
4200 4423 7.042051 TGTCAGATTTTGGAGACTTTTAAGACG 60.042 37.037 0.00 0.00 32.41 4.18
4201 4424 8.154649 TGTCAGATTTTGGAGACTTTTAAGAC 57.845 34.615 0.00 0.00 32.41 3.01
4202 4425 8.924511 ATGTCAGATTTTGGAGACTTTTAAGA 57.075 30.769 0.00 0.00 32.41 2.10
4203 4426 9.971922 AAATGTCAGATTTTGGAGACTTTTAAG 57.028 29.630 0.00 0.00 36.91 1.85
4204 4427 9.965824 GAAATGTCAGATTTTGGAGACTTTTAA 57.034 29.630 0.00 0.00 38.01 1.52
4205 4428 9.130661 TGAAATGTCAGATTTTGGAGACTTTTA 57.869 29.630 0.00 0.00 38.01 1.52
4206 4429 7.922811 GTGAAATGTCAGATTTTGGAGACTTTT 59.077 33.333 0.00 0.00 39.50 2.27
4207 4430 7.068593 TGTGAAATGTCAGATTTTGGAGACTTT 59.931 33.333 0.00 0.00 33.27 2.66
4208 4431 6.547141 TGTGAAATGTCAGATTTTGGAGACTT 59.453 34.615 0.00 0.00 33.27 3.01
4209 4432 6.064060 TGTGAAATGTCAGATTTTGGAGACT 58.936 36.000 0.00 0.00 33.27 3.24
4210 4433 6.317789 TGTGAAATGTCAGATTTTGGAGAC 57.682 37.500 0.00 0.00 33.27 3.36
4211 4434 6.957920 TTGTGAAATGTCAGATTTTGGAGA 57.042 33.333 0.00 0.00 33.27 3.71
4212 4435 8.014322 CATTTGTGAAATGTCAGATTTTGGAG 57.986 34.615 0.00 0.00 42.53 3.86
4213 4436 7.949903 CATTTGTGAAATGTCAGATTTTGGA 57.050 32.000 0.00 0.00 42.53 3.53
4230 4453 2.788786 GCGGAACTTTGTCACATTTGTG 59.211 45.455 4.29 4.29 46.91 3.33
4231 4454 2.687935 AGCGGAACTTTGTCACATTTGT 59.312 40.909 0.00 0.00 0.00 2.83
4232 4455 3.354089 AGCGGAACTTTGTCACATTTG 57.646 42.857 0.00 0.00 0.00 2.32
4233 4456 5.508200 TTTAGCGGAACTTTGTCACATTT 57.492 34.783 0.00 0.00 0.00 2.32
4234 4457 5.705609 ATTTAGCGGAACTTTGTCACATT 57.294 34.783 0.00 0.00 0.00 2.71
4235 4458 5.354234 CCTATTTAGCGGAACTTTGTCACAT 59.646 40.000 0.00 0.00 0.00 3.21
4236 4459 4.693566 CCTATTTAGCGGAACTTTGTCACA 59.306 41.667 0.00 0.00 0.00 3.58
4237 4460 4.094442 CCCTATTTAGCGGAACTTTGTCAC 59.906 45.833 0.00 0.00 0.00 3.67
4238 4461 4.258543 CCCTATTTAGCGGAACTTTGTCA 58.741 43.478 0.00 0.00 0.00 3.58
4239 4462 4.259356 ACCCTATTTAGCGGAACTTTGTC 58.741 43.478 0.00 0.00 0.00 3.18
4240 4463 4.296621 ACCCTATTTAGCGGAACTTTGT 57.703 40.909 0.00 0.00 0.00 2.83
4241 4464 6.937436 ATTACCCTATTTAGCGGAACTTTG 57.063 37.500 0.00 0.00 0.00 2.77
4242 4465 8.215736 ACATATTACCCTATTTAGCGGAACTTT 58.784 33.333 0.00 0.00 0.00 2.66
4243 4466 7.660208 CACATATTACCCTATTTAGCGGAACTT 59.340 37.037 0.00 0.00 0.00 2.66
4244 4467 7.159372 CACATATTACCCTATTTAGCGGAACT 58.841 38.462 0.00 0.00 0.00 3.01
4245 4468 6.932960 ACACATATTACCCTATTTAGCGGAAC 59.067 38.462 0.00 0.00 0.00 3.62
4246 4469 7.069877 ACACATATTACCCTATTTAGCGGAA 57.930 36.000 0.00 0.00 0.00 4.30
4247 4470 6.268158 TGACACATATTACCCTATTTAGCGGA 59.732 38.462 0.00 0.00 0.00 5.54
4248 4471 6.367969 GTGACACATATTACCCTATTTAGCGG 59.632 42.308 0.00 0.00 0.00 5.52
4249 4472 6.926826 TGTGACACATATTACCCTATTTAGCG 59.073 38.462 3.56 0.00 0.00 4.26
4250 4473 8.671384 TTGTGACACATATTACCCTATTTAGC 57.329 34.615 9.55 0.00 0.00 3.09
4253 4476 9.474313 ACATTTGTGACACATATTACCCTATTT 57.526 29.630 9.55 0.00 0.00 1.40
4255 4478 9.555727 GTACATTTGTGACACATATTACCCTAT 57.444 33.333 9.55 0.00 0.00 2.57
4256 4479 8.541234 TGTACATTTGTGACACATATTACCCTA 58.459 33.333 9.55 0.00 0.00 3.53
4257 4480 7.398829 TGTACATTTGTGACACATATTACCCT 58.601 34.615 9.55 0.00 0.00 4.34
4258 4481 7.618502 TGTACATTTGTGACACATATTACCC 57.381 36.000 9.55 0.00 0.00 3.69
4259 4482 8.726988 AGTTGTACATTTGTGACACATATTACC 58.273 33.333 9.55 1.21 0.00 2.85
4262 4485 9.278978 TGTAGTTGTACATTTGTGACACATATT 57.721 29.630 9.55 4.46 34.02 1.28
4263 4486 8.840833 TGTAGTTGTACATTTGTGACACATAT 57.159 30.769 9.55 7.43 34.02 1.78
4264 4487 8.664211 TTGTAGTTGTACATTTGTGACACATA 57.336 30.769 9.55 5.01 38.98 2.29
4265 4488 7.255104 CCTTGTAGTTGTACATTTGTGACACAT 60.255 37.037 9.55 0.00 38.98 3.21
4266 4489 6.037720 CCTTGTAGTTGTACATTTGTGACACA 59.962 38.462 3.56 3.56 38.98 3.72
4267 4490 6.037830 ACCTTGTAGTTGTACATTTGTGACAC 59.962 38.462 0.00 0.00 38.98 3.67
4268 4491 6.116806 ACCTTGTAGTTGTACATTTGTGACA 58.883 36.000 0.00 0.00 38.98 3.58
4269 4492 6.613755 ACCTTGTAGTTGTACATTTGTGAC 57.386 37.500 0.00 0.00 38.98 3.67
4270 4493 8.734218 TTTACCTTGTAGTTGTACATTTGTGA 57.266 30.769 0.00 0.00 38.98 3.58
4271 4494 9.790389 TTTTTACCTTGTAGTTGTACATTTGTG 57.210 29.630 0.00 0.00 38.98 3.33
4337 4560 5.373222 AGGCACAAACATACAGTAAGACAA 58.627 37.500 0.00 0.00 0.00 3.18
4440 4663 3.510388 TTAGTTCCGTGAGCAGATGAG 57.490 47.619 0.00 0.00 0.00 2.90
4451 4674 4.321718 GAGGCCTTAGTTTTTAGTTCCGT 58.678 43.478 6.77 0.00 0.00 4.69
4457 4680 4.766375 TCATCCGAGGCCTTAGTTTTTAG 58.234 43.478 6.77 0.00 0.00 1.85
4461 4684 2.304761 TGTTCATCCGAGGCCTTAGTTT 59.695 45.455 6.77 0.00 0.00 2.66
4469 4692 3.312697 GGAATTTACTGTTCATCCGAGGC 59.687 47.826 0.00 0.00 0.00 4.70
4494 4717 7.718314 ACAACTTTCGAAGGGAGTAGTATTTTT 59.282 33.333 12.29 0.00 0.00 1.94
4495 4718 7.222161 ACAACTTTCGAAGGGAGTAGTATTTT 58.778 34.615 12.29 0.00 0.00 1.82
4496 4719 6.766429 ACAACTTTCGAAGGGAGTAGTATTT 58.234 36.000 12.29 0.00 0.00 1.40
4497 4720 6.356186 ACAACTTTCGAAGGGAGTAGTATT 57.644 37.500 12.29 0.00 0.00 1.89
4499 4722 6.006449 AGTACAACTTTCGAAGGGAGTAGTA 58.994 40.000 12.29 4.30 0.00 1.82
4501 4724 5.388408 AGTACAACTTTCGAAGGGAGTAG 57.612 43.478 12.29 1.44 0.00 2.57
4502 4725 6.240894 TCTAGTACAACTTTCGAAGGGAGTA 58.759 40.000 12.29 10.43 0.00 2.59
4503 4726 5.075493 TCTAGTACAACTTTCGAAGGGAGT 58.925 41.667 12.29 11.37 0.00 3.85
4504 4727 5.183522 ACTCTAGTACAACTTTCGAAGGGAG 59.816 44.000 12.29 8.03 0.00 4.30
4505 4728 5.075493 ACTCTAGTACAACTTTCGAAGGGA 58.925 41.667 12.29 0.00 0.00 4.20
4506 4729 5.388408 ACTCTAGTACAACTTTCGAAGGG 57.612 43.478 12.29 5.53 0.00 3.95
4507 4730 6.144080 CACAACTCTAGTACAACTTTCGAAGG 59.856 42.308 5.63 5.63 0.00 3.46
4508 4731 6.916387 TCACAACTCTAGTACAACTTTCGAAG 59.084 38.462 0.00 0.00 0.00 3.79
4509 4732 6.694411 GTCACAACTCTAGTACAACTTTCGAA 59.306 38.462 0.00 0.00 0.00 3.71
4510 4733 6.183360 TGTCACAACTCTAGTACAACTTTCGA 60.183 38.462 0.00 0.00 0.00 3.71
4511 4734 5.975344 TGTCACAACTCTAGTACAACTTTCG 59.025 40.000 0.00 0.00 0.00 3.46
4512 4735 7.766219 TTGTCACAACTCTAGTACAACTTTC 57.234 36.000 0.00 0.00 0.00 2.62
4522 4745 9.778993 CATCCAAATTAATTGTCACAACTCTAG 57.221 33.333 0.39 0.00 37.32 2.43
4525 4748 6.033831 CGCATCCAAATTAATTGTCACAACTC 59.966 38.462 0.39 0.00 37.32 3.01
4528 4751 6.018589 TCGCATCCAAATTAATTGTCACAA 57.981 33.333 0.39 0.00 37.32 3.33
4531 4754 5.394005 CCCTTCGCATCCAAATTAATTGTCA 60.394 40.000 0.39 0.00 37.32 3.58
4541 4764 5.930837 AAATTATTCCCTTCGCATCCAAA 57.069 34.783 0.00 0.00 0.00 3.28
4595 4818 7.589958 TGGGTGTATAAAACAACTCAATGTT 57.410 32.000 0.00 0.00 45.78 2.71
4597 4820 6.531240 GCATGGGTGTATAAAACAACTCAATG 59.469 38.462 0.00 0.00 45.78 2.82
4599 4822 5.536538 TGCATGGGTGTATAAAACAACTCAA 59.463 36.000 0.00 0.00 45.78 3.02
4600 4823 5.073428 TGCATGGGTGTATAAAACAACTCA 58.927 37.500 0.00 0.00 45.78 3.41
4601 4824 5.637006 TGCATGGGTGTATAAAACAACTC 57.363 39.130 0.00 0.00 45.78 3.01
4602 4825 6.412362 TTTGCATGGGTGTATAAAACAACT 57.588 33.333 0.00 0.00 45.78 3.16
4603 4826 7.665561 ATTTTGCATGGGTGTATAAAACAAC 57.334 32.000 0.00 0.00 45.78 3.32
4606 4829 8.947304 CAAAATTTTGCATGGGTGTATAAAAC 57.053 30.769 17.48 0.00 0.00 2.43
4643 4866 6.718454 TTTTTGTCCACACTTTCACAAATG 57.282 33.333 0.00 0.00 38.27 2.32
4714 4942 4.653341 ACATTTGTGGAGATGTGGGAAAAA 59.347 37.500 0.00 0.00 35.31 1.94
4717 4945 3.156293 CACATTTGTGGAGATGTGGGAA 58.844 45.455 8.24 0.00 45.81 3.97
4742 4975 2.287849 TGCGTGCAAATTTTTCGGATGA 60.288 40.909 0.00 0.00 0.00 2.92
4748 4981 4.963237 TGTACATGCGTGCAAATTTTTC 57.037 36.364 5.64 0.00 34.53 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.