Multiple sequence alignment - TraesCS7A01G231700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G231700 chr7A 100.000 5495 0 0 1 5495 202735725 202741219 0.000000e+00 10148.0
1 TraesCS7A01G231700 chr7A 87.835 485 32 10 275 754 701636450 701635988 1.350000e-150 544.0
2 TraesCS7A01G231700 chr7A 97.727 88 2 0 5408 5495 108784000 108784087 9.530000e-33 152.0
3 TraesCS7A01G231700 chr7A 77.841 176 28 8 5201 5369 151859133 151859304 1.260000e-16 99.0
4 TraesCS7A01G231700 chr7A 97.436 39 0 1 4666 4704 731461090 731461053 1.280000e-06 65.8
5 TraesCS7A01G231700 chr7B 93.729 4098 162 36 778 4819 156681014 156685072 0.000000e+00 6056.0
6 TraesCS7A01G231700 chr7B 89.753 527 46 5 4859 5385 156685075 156685593 0.000000e+00 667.0
7 TraesCS7A01G231700 chr7B 85.667 300 28 5 341 636 3328963 3329251 8.950000e-78 302.0
8 TraesCS7A01G231700 chr7D 92.117 3349 131 64 778 4056 193208687 193211972 0.000000e+00 4599.0
9 TraesCS7A01G231700 chr7D 89.970 668 53 8 4154 4812 193212386 193213048 0.000000e+00 850.0
10 TraesCS7A01G231700 chr7D 85.146 478 35 15 4907 5368 193213065 193213522 1.800000e-124 457.0
11 TraesCS7A01G231700 chr2A 90.144 487 34 9 275 756 753247598 753247121 6.050000e-174 621.0
12 TraesCS7A01G231700 chr2A 89.712 486 32 6 274 754 525735062 525734590 6.090000e-169 604.0
13 TraesCS7A01G231700 chr1A 88.776 490 37 8 271 755 458449328 458449804 7.930000e-163 584.0
14 TraesCS7A01G231700 chr1A 96.591 88 3 0 5408 5495 60293498 60293411 4.440000e-31 147.0
15 TraesCS7A01G231700 chr1A 76.571 175 34 4 3 170 453123207 453123033 7.580000e-14 89.8
16 TraesCS7A01G231700 chr5A 88.477 486 33 10 275 755 412183972 412183505 2.870000e-157 566.0
17 TraesCS7A01G231700 chr5A 84.412 417 21 17 339 755 134097879 134098251 2.420000e-98 370.0
18 TraesCS7A01G231700 chr1B 86.992 492 35 14 269 755 614339691 614339224 1.360000e-145 527.0
19 TraesCS7A01G231700 chr1B 97.727 88 2 0 5408 5495 27083521 27083608 9.530000e-33 152.0
20 TraesCS7A01G231700 chr1B 96.591 88 3 0 5408 5495 569979308 569979395 4.440000e-31 147.0
21 TraesCS7A01G231700 chr1B 80.233 172 34 0 277 448 553657920 553657749 4.470000e-26 130.0
22 TraesCS7A01G231700 chr4A 86.531 490 30 10 273 757 630878295 630878753 1.770000e-139 507.0
23 TraesCS7A01G231700 chr4A 91.020 245 14 4 268 504 292923737 292923493 1.910000e-84 324.0
24 TraesCS7A01G231700 chr4A 97.727 88 2 0 5408 5495 587210300 587210213 9.530000e-33 152.0
25 TraesCS7A01G231700 chr3A 83.402 488 32 22 273 755 643162471 643162914 1.840000e-109 407.0
26 TraesCS7A01G231700 chr3A 98.864 88 1 0 5408 5495 688890724 688890811 2.050000e-34 158.0
27 TraesCS7A01G231700 chr3A 97.727 88 2 0 5408 5495 12178172 12178085 9.530000e-33 152.0
28 TraesCS7A01G231700 chr4D 84.634 423 37 11 339 756 87726787 87726388 3.990000e-106 396.0
29 TraesCS7A01G231700 chr6A 93.069 202 12 2 556 757 175596758 175596957 1.500000e-75 294.0
30 TraesCS7A01G231700 chr3D 83.051 177 27 3 5201 5376 520284283 520284457 2.050000e-34 158.0
31 TraesCS7A01G231700 chr3B 98.851 87 1 0 5408 5494 409279166 409279080 7.370000e-34 156.0
32 TraesCS7A01G231700 chr5B 96.591 88 3 0 5408 5495 550170534 550170621 4.440000e-31 147.0
33 TraesCS7A01G231700 chr5B 84.706 85 13 0 4811 4895 31121620 31121536 9.810000e-13 86.1
34 TraesCS7A01G231700 chr4B 79.518 166 27 5 279 443 58763402 58763561 1.620000e-20 111.0
35 TraesCS7A01G231700 chrUn 100.000 30 0 0 277 306 110347988 110348017 7.690000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G231700 chr7A 202735725 202741219 5494 False 10148.000000 10148 100.000000 1 5495 1 chr7A.!!$F3 5494
1 TraesCS7A01G231700 chr7B 156681014 156685593 4579 False 3361.500000 6056 91.741000 778 5385 2 chr7B.!!$F2 4607
2 TraesCS7A01G231700 chr7D 193208687 193213522 4835 False 1968.666667 4599 89.077667 778 5368 3 chr7D.!!$F1 4590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.171007 GTATGCAATGCGCCACTTGT 59.829 50.0 4.18 0.0 41.33 3.16 F
264 265 0.178068 TAGTGATTTCGAGCCCTGGC 59.822 55.0 0.00 0.0 42.33 4.85 F
479 480 0.179062 CCACTAGCCTGATGACCTGC 60.179 60.0 0.00 0.0 0.00 4.85 F
592 593 0.524414 AAAAGATAAACGGGCCGTGC 59.476 50.0 34.87 21.4 39.99 5.34 F
2084 2107 0.592637 CCAGCATGTCGCACAAAAGA 59.407 50.0 0.00 0.0 46.13 2.52 F
2361 2420 0.463295 AGCTCTGCTACCTACGCGTA 60.463 55.0 19.40 19.4 36.99 4.42 F
3500 3561 0.952010 GTTCGGCGGGCTAAAGTTCA 60.952 55.0 7.21 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1586 1609 0.582005 GTTTGTCACTCACGTCTGGC 59.418 55.000 0.00 0.0 0.00 4.85 R
2065 2088 0.592637 TCTTTTGTGCGACATGCTGG 59.407 50.000 0.00 0.0 46.63 4.85 R
2067 2090 1.308047 TGTCTTTTGTGCGACATGCT 58.692 45.000 0.00 0.0 46.63 3.79 R
2337 2362 2.099427 GCGTAGGTAGCAGAGCTTACTT 59.901 50.000 0.00 0.0 40.44 2.24 R
3485 3546 2.092323 AGAAATGAACTTTAGCCCGCC 58.908 47.619 0.00 0.0 0.00 6.13 R
4317 4714 1.172180 GCCTTACCACTTGTGCTGCA 61.172 55.000 0.00 0.0 0.00 4.41 R
5402 5823 0.175989 CTTTGGTACCTCCGCTCTCC 59.824 60.000 14.36 0.0 39.52 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.944234 TCTAGTTTCTAAGATCTCGATGCA 57.056 37.500 0.00 0.00 0.00 3.96
44 45 7.334844 TCTAGTTTCTAAGATCTCGATGCAA 57.665 36.000 0.00 0.00 0.00 4.08
45 46 7.772166 TCTAGTTTCTAAGATCTCGATGCAAA 58.228 34.615 0.00 0.00 0.00 3.68
46 47 8.251026 TCTAGTTTCTAAGATCTCGATGCAAAA 58.749 33.333 0.00 0.00 0.00 2.44
47 48 7.672983 AGTTTCTAAGATCTCGATGCAAAAA 57.327 32.000 0.00 0.00 0.00 1.94
75 76 3.662247 AAACGGTTTGGTGTTTGAACA 57.338 38.095 5.12 0.00 36.96 3.18
86 87 3.713858 TGTTTGAACACATGGCTCAAG 57.286 42.857 0.00 0.00 33.17 3.02
87 88 3.286353 TGTTTGAACACATGGCTCAAGA 58.714 40.909 0.00 0.00 33.17 3.02
88 89 3.698539 TGTTTGAACACATGGCTCAAGAA 59.301 39.130 0.00 0.00 33.17 2.52
89 90 4.159321 TGTTTGAACACATGGCTCAAGAAA 59.841 37.500 0.00 0.00 33.17 2.52
90 91 5.163426 TGTTTGAACACATGGCTCAAGAAAT 60.163 36.000 0.00 0.00 33.17 2.17
91 92 6.040278 TGTTTGAACACATGGCTCAAGAAATA 59.960 34.615 0.00 0.00 33.17 1.40
92 93 6.647334 TTGAACACATGGCTCAAGAAATAA 57.353 33.333 0.00 0.00 0.00 1.40
93 94 6.647334 TGAACACATGGCTCAAGAAATAAA 57.353 33.333 0.00 0.00 0.00 1.40
94 95 7.048629 TGAACACATGGCTCAAGAAATAAAA 57.951 32.000 0.00 0.00 0.00 1.52
95 96 6.922957 TGAACACATGGCTCAAGAAATAAAAC 59.077 34.615 0.00 0.00 0.00 2.43
96 97 6.403866 ACACATGGCTCAAGAAATAAAACA 57.596 33.333 0.00 0.00 0.00 2.83
97 98 6.996509 ACACATGGCTCAAGAAATAAAACAT 58.003 32.000 0.00 0.00 0.00 2.71
98 99 7.444299 ACACATGGCTCAAGAAATAAAACATT 58.556 30.769 0.00 0.00 0.00 2.71
99 100 7.933033 ACACATGGCTCAAGAAATAAAACATTT 59.067 29.630 0.00 0.00 0.00 2.32
100 101 8.776470 CACATGGCTCAAGAAATAAAACATTTT 58.224 29.630 0.00 0.00 0.00 1.82
101 102 9.995003 ACATGGCTCAAGAAATAAAACATTTTA 57.005 25.926 0.00 0.00 37.08 1.52
143 144 6.980051 AAAAACTCTCAAGTTACGACAAGT 57.020 33.333 0.00 0.00 45.07 3.16
144 145 5.968387 AAACTCTCAAGTTACGACAAGTG 57.032 39.130 0.00 0.00 45.07 3.16
145 146 4.913335 ACTCTCAAGTTACGACAAGTGA 57.087 40.909 0.00 0.00 28.74 3.41
146 147 4.608951 ACTCTCAAGTTACGACAAGTGAC 58.391 43.478 0.00 0.00 39.38 3.67
147 148 4.097437 ACTCTCAAGTTACGACAAGTGACA 59.903 41.667 0.00 0.00 41.29 3.58
148 149 4.357142 TCTCAAGTTACGACAAGTGACAC 58.643 43.478 0.00 0.00 41.29 3.67
149 150 3.110358 TCAAGTTACGACAAGTGACACG 58.890 45.455 0.00 0.00 41.29 4.49
150 151 2.855963 CAAGTTACGACAAGTGACACGT 59.144 45.455 0.00 0.00 41.29 4.49
151 152 3.969117 AGTTACGACAAGTGACACGTA 57.031 42.857 0.00 0.00 41.29 3.57
152 153 4.494350 AGTTACGACAAGTGACACGTAT 57.506 40.909 0.00 0.00 41.29 3.06
153 154 4.224433 AGTTACGACAAGTGACACGTATG 58.776 43.478 0.00 3.93 41.29 2.39
154 155 1.415374 ACGACAAGTGACACGTATGC 58.585 50.000 0.00 0.00 37.22 3.14
155 156 1.269361 ACGACAAGTGACACGTATGCA 60.269 47.619 0.00 0.00 37.22 3.96
156 157 1.790043 CGACAAGTGACACGTATGCAA 59.210 47.619 0.00 0.00 0.00 4.08
157 158 2.411748 CGACAAGTGACACGTATGCAAT 59.588 45.455 0.00 0.00 0.00 3.56
158 159 3.721791 CGACAAGTGACACGTATGCAATG 60.722 47.826 0.00 0.00 0.00 2.82
159 160 2.095768 ACAAGTGACACGTATGCAATGC 60.096 45.455 0.00 0.00 0.00 3.56
167 168 2.948093 GTATGCAATGCGCCACTTG 58.052 52.632 4.18 7.54 41.33 3.16
168 169 0.171007 GTATGCAATGCGCCACTTGT 59.829 50.000 4.18 0.00 41.33 3.16
169 170 0.451383 TATGCAATGCGCCACTTGTC 59.549 50.000 4.18 3.81 41.33 3.18
170 171 2.502510 GCAATGCGCCACTTGTCG 60.503 61.111 4.18 0.00 32.94 4.35
171 172 2.176546 CAATGCGCCACTTGTCGG 59.823 61.111 4.18 0.00 0.00 4.79
172 173 3.737172 AATGCGCCACTTGTCGGC 61.737 61.111 4.18 0.00 46.62 5.54
178 179 3.283684 CCACTTGTCGGCGCCAAA 61.284 61.111 28.98 16.30 0.00 3.28
179 180 2.252260 CACTTGTCGGCGCCAAAG 59.748 61.111 28.98 26.21 0.00 2.77
180 181 2.110213 ACTTGTCGGCGCCAAAGA 59.890 55.556 29.89 17.49 0.00 2.52
181 182 1.525077 ACTTGTCGGCGCCAAAGAA 60.525 52.632 29.89 20.01 0.00 2.52
182 183 1.207593 CTTGTCGGCGCCAAAGAAG 59.792 57.895 28.98 22.33 0.00 2.85
183 184 2.187599 CTTGTCGGCGCCAAAGAAGG 62.188 60.000 28.98 8.23 0.00 3.46
184 185 2.668550 GTCGGCGCCAAAGAAGGT 60.669 61.111 28.98 0.00 0.00 3.50
185 186 2.668212 TCGGCGCCAAAGAAGGTG 60.668 61.111 28.98 6.54 42.11 4.00
186 187 3.737172 CGGCGCCAAAGAAGGTGG 61.737 66.667 28.98 0.98 39.57 4.61
187 188 2.597510 GGCGCCAAAGAAGGTGGT 60.598 61.111 24.80 0.00 39.57 4.16
188 189 1.302993 GGCGCCAAAGAAGGTGGTA 60.303 57.895 24.80 0.00 39.57 3.25
189 190 0.891904 GGCGCCAAAGAAGGTGGTAA 60.892 55.000 24.80 0.00 39.57 2.85
190 191 0.521735 GCGCCAAAGAAGGTGGTAAG 59.478 55.000 0.00 0.00 39.57 2.34
191 192 1.892209 CGCCAAAGAAGGTGGTAAGT 58.108 50.000 0.00 0.00 38.50 2.24
192 193 2.872842 GCGCCAAAGAAGGTGGTAAGTA 60.873 50.000 0.00 0.00 39.57 2.24
193 194 3.404899 CGCCAAAGAAGGTGGTAAGTAA 58.595 45.455 0.00 0.00 38.50 2.24
194 195 3.187842 CGCCAAAGAAGGTGGTAAGTAAC 59.812 47.826 0.00 0.00 38.50 2.50
206 207 4.450082 GGTAAGTAACCTTTGCAATGGG 57.550 45.455 29.11 22.02 45.75 4.00
207 208 3.830178 GGTAAGTAACCTTTGCAATGGGT 59.170 43.478 29.11 26.63 45.75 4.51
208 209 5.011586 GGTAAGTAACCTTTGCAATGGGTA 58.988 41.667 29.11 25.66 45.75 3.69
209 210 5.477637 GGTAAGTAACCTTTGCAATGGGTAA 59.522 40.000 25.98 11.84 45.75 2.85
210 211 5.462530 AAGTAACCTTTGCAATGGGTAAC 57.537 39.130 25.98 21.34 32.50 2.50
211 212 4.736473 AGTAACCTTTGCAATGGGTAACT 58.264 39.130 25.98 22.78 32.50 2.24
212 213 4.765339 AGTAACCTTTGCAATGGGTAACTC 59.235 41.667 25.98 16.10 32.50 3.01
213 214 3.525800 ACCTTTGCAATGGGTAACTCT 57.474 42.857 29.11 8.98 0.00 3.24
214 215 3.844640 ACCTTTGCAATGGGTAACTCTT 58.155 40.909 29.11 8.33 0.00 2.85
215 216 4.223144 ACCTTTGCAATGGGTAACTCTTT 58.777 39.130 29.11 7.70 0.00 2.52
216 217 5.390387 ACCTTTGCAATGGGTAACTCTTTA 58.610 37.500 29.11 0.00 0.00 1.85
217 218 5.476945 ACCTTTGCAATGGGTAACTCTTTAG 59.523 40.000 29.11 7.10 0.00 1.85
218 219 5.385509 TTTGCAATGGGTAACTCTTTAGC 57.614 39.130 0.00 0.00 35.32 3.09
219 220 4.301072 TGCAATGGGTAACTCTTTAGCT 57.699 40.909 0.00 0.00 36.19 3.32
220 221 5.429681 TGCAATGGGTAACTCTTTAGCTA 57.570 39.130 0.00 0.00 36.19 3.32
221 222 5.428253 TGCAATGGGTAACTCTTTAGCTAG 58.572 41.667 0.00 0.00 36.19 3.42
222 223 5.045869 TGCAATGGGTAACTCTTTAGCTAGT 60.046 40.000 0.00 0.00 36.19 2.57
223 224 5.880887 GCAATGGGTAACTCTTTAGCTAGTT 59.119 40.000 5.04 5.04 39.25 2.24
224 225 6.374613 GCAATGGGTAACTCTTTAGCTAGTTT 59.625 38.462 4.99 0.00 37.19 2.66
225 226 7.094334 GCAATGGGTAACTCTTTAGCTAGTTTT 60.094 37.037 4.99 0.00 37.19 2.43
226 227 8.793592 CAATGGGTAACTCTTTAGCTAGTTTTT 58.206 33.333 4.99 0.00 37.19 1.94
250 251 7.713734 TTTTAGGCTACTCTTTAGCTAGTGA 57.286 36.000 0.00 0.00 40.25 3.41
251 252 7.899648 TTTAGGCTACTCTTTAGCTAGTGAT 57.100 36.000 0.00 0.00 40.25 3.06
252 253 7.899648 TTAGGCTACTCTTTAGCTAGTGATT 57.100 36.000 0.00 0.00 40.25 2.57
253 254 6.800072 AGGCTACTCTTTAGCTAGTGATTT 57.200 37.500 3.44 0.00 40.25 2.17
254 255 6.811954 AGGCTACTCTTTAGCTAGTGATTTC 58.188 40.000 3.44 0.00 40.25 2.17
255 256 5.688176 GGCTACTCTTTAGCTAGTGATTTCG 59.312 44.000 3.44 0.00 40.25 3.46
256 257 6.459848 GGCTACTCTTTAGCTAGTGATTTCGA 60.460 42.308 3.44 0.00 40.25 3.71
257 258 6.635239 GCTACTCTTTAGCTAGTGATTTCGAG 59.365 42.308 0.00 0.00 37.56 4.04
258 259 5.344884 ACTCTTTAGCTAGTGATTTCGAGC 58.655 41.667 0.00 0.00 36.56 5.03
259 260 4.683832 TCTTTAGCTAGTGATTTCGAGCC 58.316 43.478 0.00 0.00 36.89 4.70
260 261 3.454371 TTAGCTAGTGATTTCGAGCCC 57.546 47.619 0.00 0.00 36.89 5.19
261 262 1.490574 AGCTAGTGATTTCGAGCCCT 58.509 50.000 0.00 0.00 36.89 5.19
262 263 1.137872 AGCTAGTGATTTCGAGCCCTG 59.862 52.381 0.00 0.00 36.89 4.45
263 264 1.808133 GCTAGTGATTTCGAGCCCTGG 60.808 57.143 0.00 0.00 31.62 4.45
264 265 0.178068 TAGTGATTTCGAGCCCTGGC 59.822 55.000 0.00 0.00 42.33 4.85
265 266 2.115291 GTGATTTCGAGCCCTGGCC 61.115 63.158 4.13 0.00 43.17 5.36
266 267 2.300967 TGATTTCGAGCCCTGGCCT 61.301 57.895 3.32 0.00 43.17 5.19
267 268 1.821332 GATTTCGAGCCCTGGCCTG 60.821 63.158 3.32 2.54 43.17 4.85
268 269 2.257409 GATTTCGAGCCCTGGCCTGA 62.257 60.000 11.88 0.00 43.17 3.86
269 270 2.543067 ATTTCGAGCCCTGGCCTGAC 62.543 60.000 11.88 2.79 43.17 3.51
289 290 2.321213 GCTATAGCTGGCCAAACGG 58.679 57.895 17.75 0.00 38.21 4.44
290 291 1.166531 GCTATAGCTGGCCAAACGGG 61.167 60.000 17.75 0.00 38.21 5.28
327 328 1.217882 GGCACGACCCATCTTAATCG 58.782 55.000 0.00 0.00 40.39 3.34
331 332 3.160777 ACGACCCATCTTAATCGTGTC 57.839 47.619 0.00 0.00 45.50 3.67
332 333 2.758979 ACGACCCATCTTAATCGTGTCT 59.241 45.455 0.00 0.00 45.50 3.41
333 334 3.116300 CGACCCATCTTAATCGTGTCTG 58.884 50.000 0.00 0.00 0.00 3.51
334 335 3.458189 GACCCATCTTAATCGTGTCTGG 58.542 50.000 0.00 0.00 0.00 3.86
335 336 2.213499 CCCATCTTAATCGTGTCTGGC 58.787 52.381 0.00 0.00 0.00 4.85
336 337 2.419990 CCCATCTTAATCGTGTCTGGCA 60.420 50.000 0.00 0.00 0.00 4.92
337 338 3.470709 CCATCTTAATCGTGTCTGGCAT 58.529 45.455 0.00 0.00 0.00 4.40
338 339 3.249320 CCATCTTAATCGTGTCTGGCATG 59.751 47.826 0.00 0.00 35.47 4.06
339 340 2.905075 TCTTAATCGTGTCTGGCATGG 58.095 47.619 1.05 0.00 34.91 3.66
340 341 1.331756 CTTAATCGTGTCTGGCATGGC 59.668 52.381 13.29 13.29 34.91 4.40
362 363 2.203139 CCCGCCATGGCACGATTA 60.203 61.111 34.93 0.00 42.06 1.75
363 364 1.600636 CCCGCCATGGCACGATTAT 60.601 57.895 34.93 0.00 42.06 1.28
364 365 1.172180 CCCGCCATGGCACGATTATT 61.172 55.000 34.93 0.00 42.06 1.40
365 366 1.518325 CCGCCATGGCACGATTATTA 58.482 50.000 34.93 0.00 42.06 0.98
366 367 1.464608 CCGCCATGGCACGATTATTAG 59.535 52.381 34.93 15.02 42.06 1.73
367 368 2.143122 CGCCATGGCACGATTATTAGT 58.857 47.619 34.93 0.00 42.06 2.24
368 369 2.157668 CGCCATGGCACGATTATTAGTC 59.842 50.000 34.93 1.76 42.06 2.59
369 370 2.157668 GCCATGGCACGATTATTAGTCG 59.842 50.000 32.08 7.01 44.26 4.18
370 371 2.736721 CCATGGCACGATTATTAGTCGG 59.263 50.000 12.41 3.88 43.06 4.79
371 372 2.519377 TGGCACGATTATTAGTCGGG 57.481 50.000 12.41 9.61 44.93 5.14
374 375 2.519377 CACGATTATTAGTCGGGCCA 57.481 50.000 4.39 0.00 43.06 5.36
375 376 3.040147 CACGATTATTAGTCGGGCCAT 57.960 47.619 4.39 0.00 43.06 4.40
376 377 2.736721 CACGATTATTAGTCGGGCCATG 59.263 50.000 4.39 0.00 43.06 3.66
377 378 1.732259 CGATTATTAGTCGGGCCATGC 59.268 52.381 4.39 0.00 35.55 4.06
378 379 2.612972 CGATTATTAGTCGGGCCATGCT 60.613 50.000 4.39 0.61 35.55 3.79
379 380 2.254546 TTATTAGTCGGGCCATGCTG 57.745 50.000 4.39 0.00 0.00 4.41
380 381 1.128200 TATTAGTCGGGCCATGCTGT 58.872 50.000 4.39 0.00 0.00 4.40
381 382 0.464373 ATTAGTCGGGCCATGCTGTG 60.464 55.000 4.39 0.00 0.00 3.66
382 383 3.680620 TAGTCGGGCCATGCTGTGC 62.681 63.158 4.39 0.00 0.00 4.57
403 404 4.821589 CCCGCGTTCTGCCTCCTC 62.822 72.222 4.92 0.00 42.08 3.71
404 405 3.764466 CCGCGTTCTGCCTCCTCT 61.764 66.667 4.92 0.00 42.08 3.69
405 406 2.507992 CGCGTTCTGCCTCCTCTG 60.508 66.667 0.00 0.00 42.08 3.35
406 407 2.125350 GCGTTCTGCCTCCTCTGG 60.125 66.667 0.00 0.00 37.76 3.86
413 414 4.811364 GCCTCCTCTGGCCCAAGC 62.811 72.222 0.00 0.00 46.82 4.01
414 415 3.333219 CCTCCTCTGGCCCAAGCA 61.333 66.667 0.00 0.00 42.56 3.91
415 416 2.045536 CTCCTCTGGCCCAAGCAC 60.046 66.667 0.00 0.00 42.56 4.40
416 417 3.965539 CTCCTCTGGCCCAAGCACG 62.966 68.421 0.00 0.00 42.56 5.34
425 426 4.659172 CCAAGCACGGCCCAGGAA 62.659 66.667 0.00 0.00 0.00 3.36
426 427 3.365265 CAAGCACGGCCCAGGAAC 61.365 66.667 0.00 0.00 0.00 3.62
427 428 4.660938 AAGCACGGCCCAGGAACC 62.661 66.667 0.00 0.00 0.00 3.62
429 430 4.966787 GCACGGCCCAGGAACCAA 62.967 66.667 0.00 0.00 0.00 3.67
430 431 2.203422 CACGGCCCAGGAACCAAA 60.203 61.111 0.00 0.00 0.00 3.28
431 432 2.203437 ACGGCCCAGGAACCAAAC 60.203 61.111 0.00 0.00 0.00 2.93
432 433 3.361977 CGGCCCAGGAACCAAACG 61.362 66.667 0.00 0.00 0.00 3.60
433 434 2.989253 GGCCCAGGAACCAAACGG 60.989 66.667 0.00 0.00 0.00 4.44
434 435 2.989253 GCCCAGGAACCAAACGGG 60.989 66.667 0.00 0.00 44.81 5.28
435 436 2.989253 CCCAGGAACCAAACGGGC 60.989 66.667 0.00 0.00 42.05 6.13
436 437 2.989253 CCAGGAACCAAACGGGCC 60.989 66.667 0.00 0.00 42.05 5.80
437 438 3.361977 CAGGAACCAAACGGGCCG 61.362 66.667 27.06 27.06 42.05 6.13
438 439 4.653888 AGGAACCAAACGGGCCGG 62.654 66.667 31.78 14.93 42.05 6.13
475 476 4.865865 GCCCACTAGCCTGATGAC 57.134 61.111 0.00 0.00 0.00 3.06
476 477 1.147153 GCCCACTAGCCTGATGACC 59.853 63.158 0.00 0.00 0.00 4.02
477 478 1.341156 GCCCACTAGCCTGATGACCT 61.341 60.000 0.00 0.00 0.00 3.85
478 479 0.467384 CCCACTAGCCTGATGACCTG 59.533 60.000 0.00 0.00 0.00 4.00
479 480 0.179062 CCACTAGCCTGATGACCTGC 60.179 60.000 0.00 0.00 0.00 4.85
480 481 0.829333 CACTAGCCTGATGACCTGCT 59.171 55.000 0.00 0.00 37.84 4.24
481 482 2.034878 CACTAGCCTGATGACCTGCTA 58.965 52.381 0.00 0.00 35.34 3.49
483 484 1.617850 CTAGCCTGATGACCTGCTAGG 59.382 57.143 9.03 1.16 46.00 3.02
495 496 3.268023 CCTGCTAGGTAGTTTCTTGGG 57.732 52.381 0.00 0.00 0.00 4.12
496 497 2.633488 CTGCTAGGTAGTTTCTTGGGC 58.367 52.381 0.00 0.00 0.00 5.36
497 498 2.237392 CTGCTAGGTAGTTTCTTGGGCT 59.763 50.000 0.00 0.00 0.00 5.19
498 499 2.027192 TGCTAGGTAGTTTCTTGGGCTG 60.027 50.000 0.00 0.00 0.00 4.85
499 500 2.236395 GCTAGGTAGTTTCTTGGGCTGA 59.764 50.000 0.00 0.00 0.00 4.26
500 501 3.118223 GCTAGGTAGTTTCTTGGGCTGAT 60.118 47.826 0.00 0.00 0.00 2.90
501 502 4.626529 GCTAGGTAGTTTCTTGGGCTGATT 60.627 45.833 0.00 0.00 0.00 2.57
502 503 4.388577 AGGTAGTTTCTTGGGCTGATTT 57.611 40.909 0.00 0.00 0.00 2.17
503 504 4.740902 AGGTAGTTTCTTGGGCTGATTTT 58.259 39.130 0.00 0.00 0.00 1.82
504 505 4.524328 AGGTAGTTTCTTGGGCTGATTTTG 59.476 41.667 0.00 0.00 0.00 2.44
505 506 4.321974 GGTAGTTTCTTGGGCTGATTTTGG 60.322 45.833 0.00 0.00 0.00 3.28
506 507 3.308401 AGTTTCTTGGGCTGATTTTGGT 58.692 40.909 0.00 0.00 0.00 3.67
507 508 3.321968 AGTTTCTTGGGCTGATTTTGGTC 59.678 43.478 0.00 0.00 0.00 4.02
508 509 1.923356 TCTTGGGCTGATTTTGGTCC 58.077 50.000 0.00 0.00 0.00 4.46
509 510 0.527565 CTTGGGCTGATTTTGGTCCG 59.472 55.000 0.00 0.00 0.00 4.79
510 511 1.531739 TTGGGCTGATTTTGGTCCGC 61.532 55.000 0.00 0.00 0.00 5.54
511 512 1.678970 GGGCTGATTTTGGTCCGCT 60.679 57.895 0.00 0.00 0.00 5.52
512 513 1.508088 GGCTGATTTTGGTCCGCTG 59.492 57.895 0.00 0.00 0.00 5.18
513 514 1.508088 GCTGATTTTGGTCCGCTGG 59.492 57.895 0.00 0.00 0.00 4.85
514 515 1.937546 GCTGATTTTGGTCCGCTGGG 61.938 60.000 0.00 0.00 0.00 4.45
515 516 1.937546 CTGATTTTGGTCCGCTGGGC 61.938 60.000 0.00 0.00 0.00 5.36
516 517 1.678970 GATTTTGGTCCGCTGGGCT 60.679 57.895 0.00 0.00 0.00 5.19
517 518 1.937546 GATTTTGGTCCGCTGGGCTG 61.938 60.000 0.00 0.00 0.00 4.85
518 519 2.713531 ATTTTGGTCCGCTGGGCTGT 62.714 55.000 0.00 0.00 0.00 4.40
519 520 2.920076 TTTTGGTCCGCTGGGCTGTT 62.920 55.000 0.00 0.00 0.00 3.16
520 521 2.920076 TTTGGTCCGCTGGGCTGTTT 62.920 55.000 0.00 0.00 0.00 2.83
521 522 2.597510 GGTCCGCTGGGCTGTTTT 60.598 61.111 0.00 0.00 0.00 2.43
522 523 2.200337 GGTCCGCTGGGCTGTTTTT 61.200 57.895 0.00 0.00 0.00 1.94
592 593 0.524414 AAAAGATAAACGGGCCGTGC 59.476 50.000 34.87 21.40 39.99 5.34
672 673 4.386413 GGCATGGCCCGATTAGAG 57.614 61.111 8.35 0.00 44.06 2.43
673 674 1.968540 GGCATGGCCCGATTAGAGC 60.969 63.158 8.35 0.00 44.06 4.09
674 675 2.320587 GCATGGCCCGATTAGAGCG 61.321 63.158 0.00 0.00 0.00 5.03
675 676 1.069765 CATGGCCCGATTAGAGCGT 59.930 57.895 0.00 0.00 0.00 5.07
676 677 1.069765 ATGGCCCGATTAGAGCGTG 59.930 57.895 0.00 0.00 0.00 5.34
677 678 2.967615 GGCCCGATTAGAGCGTGC 60.968 66.667 0.00 0.00 0.00 5.34
678 679 2.967615 GCCCGATTAGAGCGTGCC 60.968 66.667 0.00 0.00 0.00 5.01
679 680 2.658593 CCCGATTAGAGCGTGCCG 60.659 66.667 0.00 0.00 0.00 5.69
680 681 2.658593 CCGATTAGAGCGTGCCGG 60.659 66.667 0.00 0.00 0.00 6.13
681 682 2.658593 CGATTAGAGCGTGCCGGG 60.659 66.667 2.18 0.00 0.00 5.73
682 683 2.967615 GATTAGAGCGTGCCGGGC 60.968 66.667 13.32 13.32 0.00 6.13
683 684 4.547367 ATTAGAGCGTGCCGGGCC 62.547 66.667 17.97 7.00 0.00 5.80
756 757 2.664402 CCCATTTGGCCAGCTATACT 57.336 50.000 5.11 0.00 0.00 2.12
757 758 2.233271 CCCATTTGGCCAGCTATACTG 58.767 52.381 5.11 0.00 46.77 2.74
769 770 4.022413 AGCTATACTGACGGCAGATAGA 57.978 45.455 28.78 10.04 45.17 1.98
770 771 4.594970 AGCTATACTGACGGCAGATAGAT 58.405 43.478 28.78 21.50 45.17 1.98
771 772 4.397730 AGCTATACTGACGGCAGATAGATG 59.602 45.833 28.78 10.60 45.17 2.90
772 773 4.396478 GCTATACTGACGGCAGATAGATGA 59.604 45.833 28.78 1.33 45.17 2.92
773 774 5.067153 GCTATACTGACGGCAGATAGATGAT 59.933 44.000 28.78 1.25 45.17 2.45
774 775 3.657015 ACTGACGGCAGATAGATGATG 57.343 47.619 28.78 0.00 45.17 3.07
775 776 2.298446 ACTGACGGCAGATAGATGATGG 59.702 50.000 28.78 0.00 45.17 3.51
776 777 2.560105 CTGACGGCAGATAGATGATGGA 59.440 50.000 14.96 0.00 45.17 3.41
802 803 4.115199 GCTGGCCCGGTGAATCCT 62.115 66.667 0.00 0.00 0.00 3.24
844 846 2.956469 CGCAAGGTGGTTTGTGTTG 58.044 52.632 0.00 0.00 34.65 3.33
1104 1123 2.361230 GCCTCTTTCCCCAACCCG 60.361 66.667 0.00 0.00 0.00 5.28
1301 1320 7.711339 CACTGATCTATGTATATGCATGCTCAT 59.289 37.037 20.33 13.87 0.00 2.90
1411 1430 7.642978 CACTTCCTATATGACGGTATAATACGC 59.357 40.741 0.00 0.00 0.00 4.42
1466 1485 4.087182 TCCATTCCTATATCACGGTCCTC 58.913 47.826 0.00 0.00 0.00 3.71
1505 1524 4.015084 CAGCATTCATCCATCCTAATCCC 58.985 47.826 0.00 0.00 0.00 3.85
1517 1536 6.006449 CCATCCTAATCCCACTTCCTTTATG 58.994 44.000 0.00 0.00 0.00 1.90
1548 1571 6.648879 ATCTTCTTACTCCAGATAGCAGAC 57.351 41.667 0.00 0.00 0.00 3.51
1586 1609 7.282675 ACCCTTCACCTATATAATCGTCGATAG 59.717 40.741 8.43 1.53 0.00 2.08
1623 1646 6.016693 TGACAAACTGAAAGAACAAACTGTGA 60.017 34.615 0.00 0.00 37.43 3.58
1625 1648 8.050778 ACAAACTGAAAGAACAAACTGTGATA 57.949 30.769 0.00 0.00 37.43 2.15
1630 1653 8.345565 ACTGAAAGAACAAACTGTGATATTGTC 58.654 33.333 0.00 0.00 35.07 3.18
1686 1709 5.929992 CGTATTCCTTACCACTCTGTTTTGA 59.070 40.000 0.00 0.00 0.00 2.69
1735 1758 3.682858 GCACGAGTATTTTGCTCCTTACA 59.317 43.478 0.00 0.00 33.26 2.41
2065 2088 5.362556 AGTCTTGTGTTATGTGTGAATGC 57.637 39.130 0.00 0.00 0.00 3.56
2067 2090 4.023279 GTCTTGTGTTATGTGTGAATGCCA 60.023 41.667 0.00 0.00 0.00 4.92
2084 2107 0.592637 CCAGCATGTCGCACAAAAGA 59.407 50.000 0.00 0.00 46.13 2.52
2113 2136 7.063544 ACGCATAACTTCTTCTGTCTTAATGTC 59.936 37.037 0.00 0.00 0.00 3.06
2117 2140 5.482908 ACTTCTTCTGTCTTAATGTCGCAT 58.517 37.500 0.00 0.00 0.00 4.73
2122 2145 7.298122 TCTTCTGTCTTAATGTCGCATTTTTC 58.702 34.615 9.73 2.12 0.00 2.29
2300 2323 6.947644 TCATATGTTGTATGCTCTGCAAAT 57.052 33.333 1.90 0.00 43.62 2.32
2359 2418 0.661552 TAAGCTCTGCTACCTACGCG 59.338 55.000 3.53 3.53 38.25 6.01
2361 2420 0.463295 AGCTCTGCTACCTACGCGTA 60.463 55.000 19.40 19.40 36.99 4.42
2926 2985 4.081406 TGAGTTCTAGCATGGCAAAATGT 58.919 39.130 0.00 0.00 0.00 2.71
3016 3075 7.642669 TGAAGTTCTTTAGCTTGATCAAAGTG 58.357 34.615 9.88 0.00 38.25 3.16
3054 3113 4.813697 TGCAAAAAGGGTTCACAATAAAGC 59.186 37.500 0.00 0.00 0.00 3.51
3063 3122 5.334802 GGGTTCACAATAAAGCAAAAATGGC 60.335 40.000 0.00 0.00 0.00 4.40
3069 3128 7.013083 TCACAATAAAGCAAAAATGGCAAATGT 59.987 29.630 0.00 0.00 0.00 2.71
3291 3350 3.954200 TGGAAGCTTATCTGATTGCACA 58.046 40.909 0.00 9.24 29.34 4.57
3303 3362 5.904941 TCTGATTGCACAAAACATTTCAGT 58.095 33.333 8.48 0.00 33.09 3.41
3485 3546 4.677584 TGAACCCACAAAAGAATTGTTCG 58.322 39.130 0.00 0.00 34.78 3.95
3500 3561 0.952010 GTTCGGCGGGCTAAAGTTCA 60.952 55.000 7.21 0.00 0.00 3.18
3533 3594 6.661669 ACGTACCTTATTTGTTTGTAGTTGC 58.338 36.000 0.00 0.00 0.00 4.17
3584 3645 5.340439 ACTAGCTTGGACGCTAACTTATT 57.660 39.130 0.00 0.00 41.57 1.40
3908 3989 5.835113 TTGAAAGGAAGTATATGGCTTGC 57.165 39.130 5.61 5.61 35.03 4.01
3910 3991 2.959465 AGGAAGTATATGGCTTGCCC 57.041 50.000 9.35 0.00 35.33 5.36
4025 4106 1.522668 TACGCTTCCATATGCCATGC 58.477 50.000 0.00 0.00 0.00 4.06
4066 4147 2.584492 ACTGCCAAAAGTGTTGAAGC 57.416 45.000 0.00 0.00 0.00 3.86
4084 4165 5.608449 TGAAGCTCTGATCATACTTGATGG 58.392 41.667 9.10 0.00 42.73 3.51
4108 4189 6.282167 GGGCAAAGAGTAAGGAATAGTAGAC 58.718 44.000 0.00 0.00 0.00 2.59
4109 4190 6.282167 GGCAAAGAGTAAGGAATAGTAGACC 58.718 44.000 0.00 0.00 0.00 3.85
4110 4191 6.282167 GCAAAGAGTAAGGAATAGTAGACCC 58.718 44.000 0.00 0.00 0.00 4.46
4111 4192 6.685873 GCAAAGAGTAAGGAATAGTAGACCCC 60.686 46.154 0.00 0.00 0.00 4.95
4112 4193 5.077369 AGAGTAAGGAATAGTAGACCCCC 57.923 47.826 0.00 0.00 0.00 5.40
4150 4231 1.958579 ACGCATACCTCGGTGCTATTA 59.041 47.619 0.00 0.00 39.16 0.98
4268 4665 3.632643 TGAGCTGATTCATTGTGCCTA 57.367 42.857 0.00 0.00 0.00 3.93
4317 4714 3.255149 CAGTTGAGAAGATGCTGCCTTTT 59.745 43.478 0.00 0.00 0.00 2.27
4378 4777 5.523369 ACTAGTATTGTATTACGGGCGAAC 58.477 41.667 0.00 0.00 0.00 3.95
4523 4924 0.399949 ACTGGCCCTCCGGATCAATA 60.400 55.000 3.57 0.00 41.45 1.90
4536 4937 4.501571 CCGGATCAATATCTGTTTCCTCGT 60.502 45.833 0.00 0.00 36.85 4.18
4582 4988 4.508124 CGATTCTGGTGTAGTAATGCCTTC 59.492 45.833 0.00 0.00 0.00 3.46
4583 4989 4.901197 TTCTGGTGTAGTAATGCCTTCA 57.099 40.909 0.00 0.00 0.00 3.02
4611 5017 6.899393 TCCTGTCTTGCTTTTATTGTGAAT 57.101 33.333 0.00 0.00 0.00 2.57
4624 5030 9.368674 CTTTTATTGTGAATATTGTGGCAATCA 57.631 29.630 0.00 0.00 0.00 2.57
4628 5034 6.587206 TGTGAATATTGTGGCAATCAAGAA 57.413 33.333 0.00 0.00 0.00 2.52
4656 5062 6.314917 ACAAGGGGATACATTTTTCTTCACT 58.685 36.000 0.00 0.00 39.74 3.41
4675 5081 9.011095 TCTTCACTAACCCTTGATATATACTCG 57.989 37.037 0.00 0.00 0.00 4.18
4779 5185 4.713553 ACCCAAAAACCATTGAACAATCC 58.286 39.130 0.00 0.00 31.84 3.01
4869 5275 8.060020 CAGTTCAAATTGAATTGCTAAAACGA 57.940 30.769 16.24 0.00 37.30 3.85
4873 5279 8.005662 TCAAATTGAATTGCTAAAACGACATG 57.994 30.769 0.00 0.00 0.00 3.21
4881 5287 9.169468 GAATTGCTAAAACGACATGTATTATGG 57.831 33.333 0.00 0.00 0.00 2.74
4884 5290 8.133754 TGCTAAAACGACATGTATTATGGTAC 57.866 34.615 0.00 0.00 0.00 3.34
4889 5295 4.022589 ACGACATGTATTATGGTACGGAGG 60.023 45.833 0.00 0.00 0.00 4.30
4891 5297 4.485875 ACATGTATTATGGTACGGAGGGA 58.514 43.478 0.00 0.00 0.00 4.20
4892 5298 4.527038 ACATGTATTATGGTACGGAGGGAG 59.473 45.833 0.00 0.00 0.00 4.30
4897 5303 7.645942 TGTATTATGGTACGGAGGGAGTATAT 58.354 38.462 0.00 0.00 0.00 0.86
4898 5304 8.780977 TGTATTATGGTACGGAGGGAGTATATA 58.219 37.037 0.00 0.00 0.00 0.86
4899 5305 9.061435 GTATTATGGTACGGAGGGAGTATATAC 57.939 40.741 4.60 4.60 0.00 1.47
4900 5306 4.999469 TGGTACGGAGGGAGTATATACA 57.001 45.455 15.18 0.00 0.00 2.29
4901 5307 5.323382 TGGTACGGAGGGAGTATATACAA 57.677 43.478 15.18 0.00 0.00 2.41
4902 5308 5.704354 TGGTACGGAGGGAGTATATACAAA 58.296 41.667 15.18 0.00 0.00 2.83
4903 5309 6.135454 TGGTACGGAGGGAGTATATACAAAA 58.865 40.000 15.18 0.00 0.00 2.44
4904 5310 6.266103 TGGTACGGAGGGAGTATATACAAAAG 59.734 42.308 15.18 2.71 0.00 2.27
4905 5311 5.211174 ACGGAGGGAGTATATACAAAAGC 57.789 43.478 15.18 1.81 0.00 3.51
4925 5331 4.445453 AGCCAAAAGCCAAAAGAAAGAAG 58.555 39.130 0.00 0.00 45.47 2.85
5292 5710 3.504134 GTGGTACAACACATGGCACATAA 59.496 43.478 0.00 0.00 43.75 1.90
5293 5711 4.022762 GTGGTACAACACATGGCACATAAA 60.023 41.667 0.00 0.00 43.75 1.40
5348 5769 2.681848 GACATGAGATGCTCAACCCAAG 59.318 50.000 0.00 0.00 44.04 3.61
5369 5790 5.520376 AGCAGAGCAAAACACAACTAAAT 57.480 34.783 0.00 0.00 0.00 1.40
5371 5792 6.340522 AGCAGAGCAAAACACAACTAAATTT 58.659 32.000 0.00 0.00 0.00 1.82
5372 5793 6.256321 AGCAGAGCAAAACACAACTAAATTTG 59.744 34.615 0.00 0.00 34.84 2.32
5380 5801 3.004315 ACACAACTAAATTTGCCGTCCTG 59.996 43.478 0.00 0.00 0.00 3.86
5382 5803 3.886505 ACAACTAAATTTGCCGTCCTGAA 59.113 39.130 0.00 0.00 0.00 3.02
5383 5804 4.023193 ACAACTAAATTTGCCGTCCTGAAG 60.023 41.667 0.00 0.00 0.00 3.02
5384 5805 4.015872 ACTAAATTTGCCGTCCTGAAGA 57.984 40.909 0.00 0.00 0.00 2.87
5385 5806 4.003648 ACTAAATTTGCCGTCCTGAAGAG 58.996 43.478 0.00 0.00 0.00 2.85
5386 5807 1.168714 AATTTGCCGTCCTGAAGAGC 58.831 50.000 0.00 0.00 0.00 4.09
5387 5808 1.021390 ATTTGCCGTCCTGAAGAGCG 61.021 55.000 0.00 0.00 0.00 5.03
5388 5809 3.589654 TTGCCGTCCTGAAGAGCGG 62.590 63.158 0.00 0.00 40.20 5.52
5389 5810 3.760035 GCCGTCCTGAAGAGCGGA 61.760 66.667 13.92 0.00 39.86 5.54
5390 5811 2.492090 CCGTCCTGAAGAGCGGAG 59.508 66.667 6.67 0.00 39.86 4.63
5391 5812 2.492090 CGTCCTGAAGAGCGGAGG 59.508 66.667 0.00 0.00 0.00 4.30
5392 5813 2.344203 CGTCCTGAAGAGCGGAGGT 61.344 63.158 0.00 0.00 46.54 3.85
5393 5814 1.030488 CGTCCTGAAGAGCGGAGGTA 61.030 60.000 0.00 0.00 39.88 3.08
5394 5815 0.456628 GTCCTGAAGAGCGGAGGTAC 59.543 60.000 0.00 0.00 39.88 3.34
5395 5816 0.683504 TCCTGAAGAGCGGAGGTACC 60.684 60.000 2.73 2.73 39.88 3.34
5396 5817 0.970937 CCTGAAGAGCGGAGGTACCA 60.971 60.000 15.94 0.00 39.88 3.25
5397 5818 0.895530 CTGAAGAGCGGAGGTACCAA 59.104 55.000 15.94 0.00 39.88 3.67
5398 5819 0.606604 TGAAGAGCGGAGGTACCAAC 59.393 55.000 15.94 7.63 39.88 3.77
5399 5820 0.458025 GAAGAGCGGAGGTACCAACG 60.458 60.000 15.94 18.39 39.88 4.10
5400 5821 1.885163 AAGAGCGGAGGTACCAACGG 61.885 60.000 23.83 17.19 39.88 4.44
5401 5822 4.078516 AGCGGAGGTACCAACGGC 62.079 66.667 23.83 23.71 38.90 5.68
5403 5824 4.807039 CGGAGGTACCAACGGCGG 62.807 72.222 15.94 0.00 38.90 6.13
5404 5825 3.384532 GGAGGTACCAACGGCGGA 61.385 66.667 15.94 0.00 38.79 5.54
5405 5826 2.183555 GAGGTACCAACGGCGGAG 59.816 66.667 15.94 2.29 0.00 4.63
5406 5827 2.283388 AGGTACCAACGGCGGAGA 60.283 61.111 15.94 0.00 0.00 3.71
5407 5828 2.183555 GGTACCAACGGCGGAGAG 59.816 66.667 13.24 0.00 0.00 3.20
5417 5838 3.902086 GCGGAGAGCGGAGGTACC 61.902 72.222 2.73 2.73 39.88 3.34
5418 5839 2.439701 CGGAGAGCGGAGGTACCA 60.440 66.667 15.94 0.00 39.88 3.25
5419 5840 2.050350 CGGAGAGCGGAGGTACCAA 61.050 63.158 15.94 0.00 39.88 3.67
5420 5841 1.601419 CGGAGAGCGGAGGTACCAAA 61.601 60.000 15.94 0.00 39.88 3.28
5421 5842 0.175989 GGAGAGCGGAGGTACCAAAG 59.824 60.000 15.94 5.40 39.88 2.77
5422 5843 0.175989 GAGAGCGGAGGTACCAAAGG 59.824 60.000 15.94 1.11 39.88 3.11
5423 5844 1.449778 GAGCGGAGGTACCAAAGGC 60.450 63.158 15.94 11.63 39.88 4.35
5424 5845 2.818274 GCGGAGGTACCAAAGGCG 60.818 66.667 15.94 0.00 38.90 5.52
5425 5846 2.125269 CGGAGGTACCAAAGGCGG 60.125 66.667 15.94 0.00 38.90 6.13
5426 5847 2.652095 CGGAGGTACCAAAGGCGGA 61.652 63.158 15.94 0.00 38.90 5.54
5427 5848 1.221021 GGAGGTACCAAAGGCGGAG 59.779 63.158 15.94 0.00 38.79 4.63
5428 5849 2.871216 GGAGGTACCAAAGGCGGAGC 62.871 65.000 15.94 0.00 46.98 4.70
5462 5883 3.954200 CAGCATGGTATATATGGTGGCA 58.046 45.455 17.54 0.00 45.45 4.92
5463 5884 3.943381 CAGCATGGTATATATGGTGGCAG 59.057 47.826 17.54 1.15 45.45 4.85
5464 5885 2.684881 GCATGGTATATATGGTGGCAGC 59.315 50.000 10.30 10.30 0.00 5.25
5465 5886 2.760634 TGGTATATATGGTGGCAGCG 57.239 50.000 12.58 0.00 0.00 5.18
5466 5887 1.338674 TGGTATATATGGTGGCAGCGC 60.339 52.381 12.58 0.00 0.00 5.92
5476 5897 2.659897 GGCAGCGCCGACAGATAG 60.660 66.667 2.29 0.00 39.62 2.08
5477 5898 2.105128 GCAGCGCCGACAGATAGT 59.895 61.111 2.29 0.00 0.00 2.12
5478 5899 1.359117 GCAGCGCCGACAGATAGTA 59.641 57.895 2.29 0.00 0.00 1.82
5479 5900 0.248907 GCAGCGCCGACAGATAGTAA 60.249 55.000 2.29 0.00 0.00 2.24
5480 5901 1.801395 GCAGCGCCGACAGATAGTAAA 60.801 52.381 2.29 0.00 0.00 2.01
5481 5902 2.120232 CAGCGCCGACAGATAGTAAAG 58.880 52.381 2.29 0.00 0.00 1.85
5482 5903 1.067212 AGCGCCGACAGATAGTAAAGG 59.933 52.381 2.29 0.00 0.00 3.11
5483 5904 1.868519 GCGCCGACAGATAGTAAAGGG 60.869 57.143 0.00 0.00 0.00 3.95
5484 5905 1.679680 CGCCGACAGATAGTAAAGGGA 59.320 52.381 0.00 0.00 0.00 4.20
5485 5906 2.287668 CGCCGACAGATAGTAAAGGGAG 60.288 54.545 0.00 0.00 0.00 4.30
5486 5907 2.694109 GCCGACAGATAGTAAAGGGAGT 59.306 50.000 0.00 0.00 0.00 3.85
5487 5908 3.243468 GCCGACAGATAGTAAAGGGAGTC 60.243 52.174 0.00 0.00 0.00 3.36
5488 5909 3.952323 CCGACAGATAGTAAAGGGAGTCA 59.048 47.826 0.00 0.00 0.00 3.41
5489 5910 4.401519 CCGACAGATAGTAAAGGGAGTCAA 59.598 45.833 0.00 0.00 0.00 3.18
5490 5911 5.105473 CCGACAGATAGTAAAGGGAGTCAAA 60.105 44.000 0.00 0.00 0.00 2.69
5491 5912 6.037098 CGACAGATAGTAAAGGGAGTCAAAG 58.963 44.000 0.00 0.00 0.00 2.77
5492 5913 6.350277 CGACAGATAGTAAAGGGAGTCAAAGT 60.350 42.308 0.00 0.00 0.00 2.66
5493 5914 6.937392 ACAGATAGTAAAGGGAGTCAAAGTC 58.063 40.000 0.00 0.00 0.00 3.01
5494 5915 6.070710 ACAGATAGTAAAGGGAGTCAAAGTCC 60.071 42.308 0.00 0.00 36.97 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.589395 TGCATCGAGATCTTAGAAACTAGATC 58.411 38.462 0.00 0.00 44.54 2.75
19 20 7.517614 TGCATCGAGATCTTAGAAACTAGAT 57.482 36.000 0.00 8.55 33.92 1.98
20 21 6.944234 TGCATCGAGATCTTAGAAACTAGA 57.056 37.500 0.00 5.53 0.00 2.43
21 22 7.993821 TTTGCATCGAGATCTTAGAAACTAG 57.006 36.000 0.00 0.00 0.00 2.57
22 23 8.771920 TTTTTGCATCGAGATCTTAGAAACTA 57.228 30.769 0.00 0.00 0.00 2.24
23 24 7.672983 TTTTTGCATCGAGATCTTAGAAACT 57.327 32.000 0.00 0.00 0.00 2.66
49 50 1.258676 ACACCAAACCGTTTGTTGGT 58.741 45.000 21.34 12.12 42.98 3.67
50 51 2.371910 AACACCAAACCGTTTGTTGG 57.628 45.000 21.34 11.55 37.37 3.77
51 52 3.713889 CAAACACCAAACCGTTTGTTG 57.286 42.857 20.03 18.65 44.39 3.33
55 56 3.662247 TGTTCAAACACCAAACCGTTT 57.338 38.095 0.00 0.00 35.76 3.60
66 67 3.286353 TCTTGAGCCATGTGTTCAAACA 58.714 40.909 12.16 0.00 36.38 2.83
67 68 3.988379 TCTTGAGCCATGTGTTCAAAC 57.012 42.857 12.16 0.00 31.11 2.93
68 69 4.998671 TTTCTTGAGCCATGTGTTCAAA 57.001 36.364 12.16 4.49 31.11 2.69
69 70 6.647334 TTATTTCTTGAGCCATGTGTTCAA 57.353 33.333 11.10 11.10 0.00 2.69
70 71 6.647334 TTTATTTCTTGAGCCATGTGTTCA 57.353 33.333 0.00 0.00 0.00 3.18
71 72 6.922957 TGTTTTATTTCTTGAGCCATGTGTTC 59.077 34.615 0.00 0.00 0.00 3.18
72 73 6.815089 TGTTTTATTTCTTGAGCCATGTGTT 58.185 32.000 0.00 0.00 0.00 3.32
73 74 6.403866 TGTTTTATTTCTTGAGCCATGTGT 57.596 33.333 0.00 0.00 0.00 3.72
74 75 7.894376 AATGTTTTATTTCTTGAGCCATGTG 57.106 32.000 0.00 0.00 0.00 3.21
75 76 8.907222 AAAATGTTTTATTTCTTGAGCCATGT 57.093 26.923 0.00 0.00 0.00 3.21
120 121 6.592607 TCACTTGTCGTAACTTGAGAGTTTTT 59.407 34.615 0.00 0.00 43.48 1.94
121 122 6.035758 GTCACTTGTCGTAACTTGAGAGTTTT 59.964 38.462 0.00 0.00 43.48 2.43
122 123 5.519206 GTCACTTGTCGTAACTTGAGAGTTT 59.481 40.000 0.00 0.00 43.48 2.66
124 125 4.097437 TGTCACTTGTCGTAACTTGAGAGT 59.903 41.667 0.00 0.00 37.87 3.24
125 126 4.441415 GTGTCACTTGTCGTAACTTGAGAG 59.559 45.833 0.00 0.00 0.00 3.20
126 127 4.357142 GTGTCACTTGTCGTAACTTGAGA 58.643 43.478 0.00 0.00 0.00 3.27
127 128 3.179795 CGTGTCACTTGTCGTAACTTGAG 59.820 47.826 0.65 0.00 0.00 3.02
128 129 3.110358 CGTGTCACTTGTCGTAACTTGA 58.890 45.455 0.65 0.00 0.00 3.02
129 130 2.855963 ACGTGTCACTTGTCGTAACTTG 59.144 45.455 0.65 0.00 34.78 3.16
130 131 3.155093 ACGTGTCACTTGTCGTAACTT 57.845 42.857 0.65 0.00 34.78 2.66
131 132 2.857592 ACGTGTCACTTGTCGTAACT 57.142 45.000 0.65 0.00 34.78 2.24
132 133 3.181546 GCATACGTGTCACTTGTCGTAAC 60.182 47.826 0.00 0.00 40.98 2.50
133 134 2.981805 GCATACGTGTCACTTGTCGTAA 59.018 45.455 0.00 0.00 40.98 3.18
134 135 2.030981 TGCATACGTGTCACTTGTCGTA 60.031 45.455 0.00 0.00 41.64 3.43
135 136 1.269361 TGCATACGTGTCACTTGTCGT 60.269 47.619 0.00 0.00 39.74 4.34
136 137 1.414378 TGCATACGTGTCACTTGTCG 58.586 50.000 0.00 0.00 0.00 4.35
137 138 3.736213 CATTGCATACGTGTCACTTGTC 58.264 45.455 0.00 0.00 0.00 3.18
138 139 2.095768 GCATTGCATACGTGTCACTTGT 60.096 45.455 3.15 0.00 0.00 3.16
139 140 2.508867 GCATTGCATACGTGTCACTTG 58.491 47.619 3.15 0.00 0.00 3.16
140 141 1.128507 CGCATTGCATACGTGTCACTT 59.871 47.619 9.69 0.00 0.00 3.16
141 142 0.721154 CGCATTGCATACGTGTCACT 59.279 50.000 9.69 0.00 0.00 3.41
142 143 0.857311 GCGCATTGCATACGTGTCAC 60.857 55.000 9.69 0.00 45.45 3.67
143 144 1.423450 GCGCATTGCATACGTGTCA 59.577 52.632 9.69 0.00 45.45 3.58
144 145 4.268655 GCGCATTGCATACGTGTC 57.731 55.556 9.69 0.00 45.45 3.67
153 154 2.502510 CGACAAGTGGCGCATTGC 60.503 61.111 10.83 0.00 40.91 3.56
161 162 3.254014 CTTTGGCGCCGACAAGTGG 62.254 63.158 23.90 0.00 29.74 4.00
162 163 1.781025 TTCTTTGGCGCCGACAAGTG 61.781 55.000 23.90 3.30 29.74 3.16
163 164 1.507141 CTTCTTTGGCGCCGACAAGT 61.507 55.000 23.90 0.00 29.74 3.16
164 165 1.207593 CTTCTTTGGCGCCGACAAG 59.792 57.895 23.90 22.30 29.74 3.16
165 166 2.258013 CCTTCTTTGGCGCCGACAA 61.258 57.895 23.90 14.17 0.00 3.18
166 167 2.668212 CCTTCTTTGGCGCCGACA 60.668 61.111 23.90 6.13 0.00 4.35
167 168 2.668550 ACCTTCTTTGGCGCCGAC 60.669 61.111 23.90 0.00 0.00 4.79
168 169 2.668212 CACCTTCTTTGGCGCCGA 60.668 61.111 23.90 19.26 0.00 5.54
169 170 3.737172 CCACCTTCTTTGGCGCCG 61.737 66.667 23.90 7.87 0.00 6.46
170 171 0.891904 TTACCACCTTCTTTGGCGCC 60.892 55.000 22.73 22.73 37.69 6.53
171 172 0.521735 CTTACCACCTTCTTTGGCGC 59.478 55.000 0.00 0.00 37.69 6.53
172 173 1.892209 ACTTACCACCTTCTTTGGCG 58.108 50.000 0.00 0.00 37.69 5.69
173 174 3.504906 GGTTACTTACCACCTTCTTTGGC 59.495 47.826 0.00 0.00 46.92 4.52
186 187 6.208007 AGTTACCCATTGCAAAGGTTACTTAC 59.792 38.462 25.96 17.41 39.78 2.34
187 188 6.308566 AGTTACCCATTGCAAAGGTTACTTA 58.691 36.000 25.96 10.88 39.78 2.24
188 189 5.144832 AGTTACCCATTGCAAAGGTTACTT 58.855 37.500 25.96 16.17 39.78 2.24
189 190 4.736473 AGTTACCCATTGCAAAGGTTACT 58.264 39.130 25.96 25.96 38.39 2.24
190 191 4.765339 AGAGTTACCCATTGCAAAGGTTAC 59.235 41.667 24.67 23.97 34.24 2.50
191 192 4.993028 AGAGTTACCCATTGCAAAGGTTA 58.007 39.130 24.67 15.82 35.02 2.85
192 193 3.844640 AGAGTTACCCATTGCAAAGGTT 58.155 40.909 24.67 12.44 35.02 3.50
193 194 3.525800 AGAGTTACCCATTGCAAAGGT 57.474 42.857 23.45 23.45 37.69 3.50
194 195 4.871933 AAAGAGTTACCCATTGCAAAGG 57.128 40.909 13.85 13.85 0.00 3.11
195 196 5.183904 AGCTAAAGAGTTACCCATTGCAAAG 59.816 40.000 1.71 0.00 0.00 2.77
196 197 5.076873 AGCTAAAGAGTTACCCATTGCAAA 58.923 37.500 1.71 0.00 0.00 3.68
197 198 4.662278 AGCTAAAGAGTTACCCATTGCAA 58.338 39.130 0.00 0.00 0.00 4.08
198 199 4.301072 AGCTAAAGAGTTACCCATTGCA 57.699 40.909 0.00 0.00 0.00 4.08
199 200 5.429130 ACTAGCTAAAGAGTTACCCATTGC 58.571 41.667 0.00 0.00 0.00 3.56
200 201 7.923414 AAACTAGCTAAAGAGTTACCCATTG 57.077 36.000 0.11 0.00 34.81 2.82
201 202 8.935614 AAAAACTAGCTAAAGAGTTACCCATT 57.064 30.769 0.11 0.00 34.81 3.16
225 226 8.130671 TCACTAGCTAAAGAGTAGCCTAAAAA 57.869 34.615 0.00 0.00 41.25 1.94
226 227 7.713734 TCACTAGCTAAAGAGTAGCCTAAAA 57.286 36.000 0.00 0.00 41.25 1.52
227 228 7.899648 ATCACTAGCTAAAGAGTAGCCTAAA 57.100 36.000 0.00 0.00 41.25 1.85
228 229 7.899648 AATCACTAGCTAAAGAGTAGCCTAA 57.100 36.000 0.00 0.00 41.25 2.69
229 230 7.255173 CGAAATCACTAGCTAAAGAGTAGCCTA 60.255 40.741 0.00 0.00 41.25 3.93
230 231 6.460399 CGAAATCACTAGCTAAAGAGTAGCCT 60.460 42.308 0.00 0.00 41.25 4.58
231 232 5.688176 CGAAATCACTAGCTAAAGAGTAGCC 59.312 44.000 0.00 0.00 41.25 3.93
232 233 6.496571 TCGAAATCACTAGCTAAAGAGTAGC 58.503 40.000 0.00 0.00 40.67 3.58
233 234 6.635239 GCTCGAAATCACTAGCTAAAGAGTAG 59.365 42.308 0.00 0.00 32.18 2.57
234 235 6.459848 GGCTCGAAATCACTAGCTAAAGAGTA 60.460 42.308 0.00 0.00 35.30 2.59
235 236 5.344884 GCTCGAAATCACTAGCTAAAGAGT 58.655 41.667 0.00 0.00 32.18 3.24
236 237 4.742659 GGCTCGAAATCACTAGCTAAAGAG 59.257 45.833 0.00 0.00 35.30 2.85
237 238 4.441634 GGGCTCGAAATCACTAGCTAAAGA 60.442 45.833 0.00 0.00 35.30 2.52
238 239 3.804873 GGGCTCGAAATCACTAGCTAAAG 59.195 47.826 0.00 0.00 35.30 1.85
239 240 3.451178 AGGGCTCGAAATCACTAGCTAAA 59.549 43.478 0.00 0.00 35.30 1.85
240 241 3.031736 AGGGCTCGAAATCACTAGCTAA 58.968 45.455 0.00 0.00 35.30 3.09
241 242 2.362397 CAGGGCTCGAAATCACTAGCTA 59.638 50.000 0.00 0.00 35.30 3.32
242 243 1.137872 CAGGGCTCGAAATCACTAGCT 59.862 52.381 0.00 0.00 35.30 3.32
243 244 1.576356 CAGGGCTCGAAATCACTAGC 58.424 55.000 0.00 0.00 0.00 3.42
244 245 1.808133 GCCAGGGCTCGAAATCACTAG 60.808 57.143 2.30 0.00 38.26 2.57
245 246 0.178068 GCCAGGGCTCGAAATCACTA 59.822 55.000 2.30 0.00 38.26 2.74
246 247 1.078143 GCCAGGGCTCGAAATCACT 60.078 57.895 2.30 0.00 38.26 3.41
247 248 2.115291 GGCCAGGGCTCGAAATCAC 61.115 63.158 10.60 0.00 41.60 3.06
248 249 2.272146 GGCCAGGGCTCGAAATCA 59.728 61.111 10.60 0.00 41.60 2.57
249 250 1.821332 CAGGCCAGGGCTCGAAATC 60.821 63.158 14.05 0.00 41.60 2.17
250 251 2.273449 CAGGCCAGGGCTCGAAAT 59.727 61.111 14.05 0.00 41.60 2.17
251 252 2.927856 TCAGGCCAGGGCTCGAAA 60.928 61.111 14.05 0.00 41.60 3.46
252 253 3.706373 GTCAGGCCAGGGCTCGAA 61.706 66.667 14.05 0.00 41.60 3.71
264 265 1.005630 GCCAGCTATAGCCGTCAGG 60.006 63.158 21.17 15.34 43.38 3.86
265 266 1.005630 GGCCAGCTATAGCCGTCAG 60.006 63.158 21.17 6.88 43.38 3.51
266 267 3.138625 GGCCAGCTATAGCCGTCA 58.861 61.111 21.17 0.00 43.38 4.35
271 272 1.166531 CCCGTTTGGCCAGCTATAGC 61.167 60.000 17.33 17.33 42.49 2.97
272 273 3.006672 CCCGTTTGGCCAGCTATAG 57.993 57.895 5.11 0.00 0.00 1.31
304 305 2.845752 TAAGATGGGTCGTGCCGTGC 62.846 60.000 0.00 0.00 38.44 5.34
305 306 0.390603 TTAAGATGGGTCGTGCCGTG 60.391 55.000 0.00 0.00 38.44 4.94
306 307 0.539986 ATTAAGATGGGTCGTGCCGT 59.460 50.000 0.00 0.00 38.44 5.68
307 308 1.217882 GATTAAGATGGGTCGTGCCG 58.782 55.000 0.00 0.00 38.44 5.69
308 309 1.217882 CGATTAAGATGGGTCGTGCC 58.782 55.000 0.00 0.00 0.00 5.01
309 310 1.935933 ACGATTAAGATGGGTCGTGC 58.064 50.000 0.00 0.00 44.61 5.34
311 312 2.758979 AGACACGATTAAGATGGGTCGT 59.241 45.455 0.00 0.00 46.95 4.34
312 313 3.116300 CAGACACGATTAAGATGGGTCG 58.884 50.000 0.00 0.00 39.78 4.79
313 314 3.458189 CCAGACACGATTAAGATGGGTC 58.542 50.000 0.00 0.00 0.00 4.46
314 315 2.420129 GCCAGACACGATTAAGATGGGT 60.420 50.000 0.00 0.00 0.00 4.51
315 316 2.213499 GCCAGACACGATTAAGATGGG 58.787 52.381 0.00 0.00 0.00 4.00
316 317 2.905075 TGCCAGACACGATTAAGATGG 58.095 47.619 0.00 0.00 0.00 3.51
317 318 3.249320 CCATGCCAGACACGATTAAGATG 59.751 47.826 0.00 0.00 0.00 2.90
318 319 3.470709 CCATGCCAGACACGATTAAGAT 58.529 45.455 0.00 0.00 0.00 2.40
319 320 2.905075 CCATGCCAGACACGATTAAGA 58.095 47.619 0.00 0.00 0.00 2.10
320 321 1.331756 GCCATGCCAGACACGATTAAG 59.668 52.381 0.00 0.00 0.00 1.85
321 322 1.378531 GCCATGCCAGACACGATTAA 58.621 50.000 0.00 0.00 0.00 1.40
322 323 3.079131 GCCATGCCAGACACGATTA 57.921 52.632 0.00 0.00 0.00 1.75
323 324 3.909662 GCCATGCCAGACACGATT 58.090 55.556 0.00 0.00 0.00 3.34
345 346 1.172180 AATAATCGTGCCATGGCGGG 61.172 55.000 30.87 24.09 45.51 6.13
346 347 1.464608 CTAATAATCGTGCCATGGCGG 59.535 52.381 30.87 24.45 45.51 6.13
347 348 2.143122 ACTAATAATCGTGCCATGGCG 58.857 47.619 30.87 18.27 45.51 5.69
348 349 2.157668 CGACTAATAATCGTGCCATGGC 59.842 50.000 30.54 30.54 42.35 4.40
349 350 2.736721 CCGACTAATAATCGTGCCATGG 59.263 50.000 7.63 7.63 37.90 3.66
350 351 2.736721 CCCGACTAATAATCGTGCCATG 59.263 50.000 0.00 0.00 37.90 3.66
351 352 2.870435 GCCCGACTAATAATCGTGCCAT 60.870 50.000 0.00 0.00 37.04 4.40
352 353 1.539496 GCCCGACTAATAATCGTGCCA 60.539 52.381 0.00 0.00 37.04 4.92
353 354 1.145803 GCCCGACTAATAATCGTGCC 58.854 55.000 0.00 0.00 37.04 5.01
354 355 1.145803 GGCCCGACTAATAATCGTGC 58.854 55.000 0.00 0.00 41.46 5.34
355 356 2.519377 TGGCCCGACTAATAATCGTG 57.481 50.000 0.00 0.00 37.90 4.35
356 357 2.870435 GCATGGCCCGACTAATAATCGT 60.870 50.000 0.00 0.00 37.90 3.73
357 358 1.732259 GCATGGCCCGACTAATAATCG 59.268 52.381 0.00 0.00 39.33 3.34
358 359 2.744202 CAGCATGGCCCGACTAATAATC 59.256 50.000 0.00 0.00 0.00 1.75
359 360 2.106511 ACAGCATGGCCCGACTAATAAT 59.893 45.455 0.00 0.00 43.62 1.28
360 361 1.488812 ACAGCATGGCCCGACTAATAA 59.511 47.619 0.00 0.00 43.62 1.40
361 362 1.128200 ACAGCATGGCCCGACTAATA 58.872 50.000 0.00 0.00 43.62 0.98
362 363 0.464373 CACAGCATGGCCCGACTAAT 60.464 55.000 0.00 0.00 43.62 1.73
363 364 1.078497 CACAGCATGGCCCGACTAA 60.078 57.895 0.00 0.00 43.62 2.24
364 365 2.584064 CACAGCATGGCCCGACTA 59.416 61.111 0.00 0.00 43.62 2.59
386 387 4.821589 GAGGAGGCAGAACGCGGG 62.822 72.222 12.47 0.00 43.84 6.13
387 388 3.764466 AGAGGAGGCAGAACGCGG 61.764 66.667 12.47 0.00 43.84 6.46
388 389 2.507992 CAGAGGAGGCAGAACGCG 60.508 66.667 3.53 3.53 43.84 6.01
389 390 2.125350 CCAGAGGAGGCAGAACGC 60.125 66.667 0.00 0.00 41.28 4.84
397 398 3.333219 TGCTTGGGCCAGAGGAGG 61.333 66.667 6.23 0.00 37.74 4.30
398 399 2.045536 GTGCTTGGGCCAGAGGAG 60.046 66.667 6.23 1.74 37.74 3.69
399 400 4.020617 CGTGCTTGGGCCAGAGGA 62.021 66.667 6.23 6.07 37.74 3.71
408 409 4.659172 TTCCTGGGCCGTGCTTGG 62.659 66.667 0.00 0.00 0.00 3.61
409 410 3.365265 GTTCCTGGGCCGTGCTTG 61.365 66.667 0.00 0.00 0.00 4.01
410 411 4.660938 GGTTCCTGGGCCGTGCTT 62.661 66.667 0.00 0.00 0.00 3.91
412 413 4.966787 TTGGTTCCTGGGCCGTGC 62.967 66.667 0.00 0.00 0.00 5.34
413 414 2.203422 TTTGGTTCCTGGGCCGTG 60.203 61.111 0.00 0.00 0.00 4.94
414 415 2.203437 GTTTGGTTCCTGGGCCGT 60.203 61.111 0.00 0.00 0.00 5.68
415 416 3.361977 CGTTTGGTTCCTGGGCCG 61.362 66.667 0.00 0.00 0.00 6.13
416 417 2.989253 CCGTTTGGTTCCTGGGCC 60.989 66.667 0.00 0.00 0.00 5.80
417 418 2.989253 CCCGTTTGGTTCCTGGGC 60.989 66.667 0.00 0.00 32.09 5.36
418 419 2.989253 GCCCGTTTGGTTCCTGGG 60.989 66.667 0.00 0.00 43.02 4.45
419 420 2.989253 GGCCCGTTTGGTTCCTGG 60.989 66.667 0.00 0.00 36.04 4.45
420 421 3.361977 CGGCCCGTTTGGTTCCTG 61.362 66.667 0.00 0.00 36.04 3.86
421 422 4.653888 CCGGCCCGTTTGGTTCCT 62.654 66.667 0.85 0.00 36.04 3.36
458 459 1.147153 GGTCATCAGGCTAGTGGGC 59.853 63.158 0.00 0.00 41.20 5.36
459 460 0.467384 CAGGTCATCAGGCTAGTGGG 59.533 60.000 0.00 0.00 0.00 4.61
460 461 0.179062 GCAGGTCATCAGGCTAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
461 462 0.829333 AGCAGGTCATCAGGCTAGTG 59.171 55.000 0.00 0.00 34.25 2.74
462 463 2.315176 CTAGCAGGTCATCAGGCTAGT 58.685 52.381 10.51 0.00 46.65 2.57
464 465 1.709578 CCTAGCAGGTCATCAGGCTA 58.290 55.000 0.00 0.00 37.79 3.93
465 466 2.525784 CCTAGCAGGTCATCAGGCT 58.474 57.895 0.00 0.00 40.26 4.58
475 476 2.681097 GCCCAAGAAACTACCTAGCAGG 60.681 54.545 1.16 1.16 42.49 4.85
476 477 2.237392 AGCCCAAGAAACTACCTAGCAG 59.763 50.000 0.00 0.00 0.00 4.24
477 478 2.027192 CAGCCCAAGAAACTACCTAGCA 60.027 50.000 0.00 0.00 0.00 3.49
478 479 2.236395 TCAGCCCAAGAAACTACCTAGC 59.764 50.000 0.00 0.00 0.00 3.42
479 480 4.762289 ATCAGCCCAAGAAACTACCTAG 57.238 45.455 0.00 0.00 0.00 3.02
480 481 5.514500 AAATCAGCCCAAGAAACTACCTA 57.486 39.130 0.00 0.00 0.00 3.08
481 482 4.388577 AAATCAGCCCAAGAAACTACCT 57.611 40.909 0.00 0.00 0.00 3.08
482 483 4.321974 CCAAAATCAGCCCAAGAAACTACC 60.322 45.833 0.00 0.00 0.00 3.18
483 484 4.280929 ACCAAAATCAGCCCAAGAAACTAC 59.719 41.667 0.00 0.00 0.00 2.73
484 485 4.479158 ACCAAAATCAGCCCAAGAAACTA 58.521 39.130 0.00 0.00 0.00 2.24
485 486 3.308401 ACCAAAATCAGCCCAAGAAACT 58.692 40.909 0.00 0.00 0.00 2.66
486 487 3.554960 GGACCAAAATCAGCCCAAGAAAC 60.555 47.826 0.00 0.00 0.00 2.78
487 488 2.632512 GGACCAAAATCAGCCCAAGAAA 59.367 45.455 0.00 0.00 0.00 2.52
488 489 2.247358 GGACCAAAATCAGCCCAAGAA 58.753 47.619 0.00 0.00 0.00 2.52
489 490 1.886222 CGGACCAAAATCAGCCCAAGA 60.886 52.381 0.00 0.00 0.00 3.02
490 491 0.527565 CGGACCAAAATCAGCCCAAG 59.472 55.000 0.00 0.00 0.00 3.61
491 492 1.531739 GCGGACCAAAATCAGCCCAA 61.532 55.000 0.00 0.00 34.15 4.12
492 493 1.976474 GCGGACCAAAATCAGCCCA 60.976 57.895 0.00 0.00 34.15 5.36
493 494 1.678970 AGCGGACCAAAATCAGCCC 60.679 57.895 0.00 0.00 40.26 5.19
494 495 1.508088 CAGCGGACCAAAATCAGCC 59.492 57.895 0.00 0.00 40.26 4.85
495 496 1.508088 CCAGCGGACCAAAATCAGC 59.492 57.895 0.00 0.00 39.76 4.26
496 497 1.937546 GCCCAGCGGACCAAAATCAG 61.938 60.000 0.00 0.00 0.00 2.90
497 498 1.976474 GCCCAGCGGACCAAAATCA 60.976 57.895 0.00 0.00 0.00 2.57
498 499 1.678970 AGCCCAGCGGACCAAAATC 60.679 57.895 0.00 0.00 0.00 2.17
499 500 1.978617 CAGCCCAGCGGACCAAAAT 60.979 57.895 0.00 0.00 0.00 1.82
500 501 2.597217 CAGCCCAGCGGACCAAAA 60.597 61.111 0.00 0.00 0.00 2.44
501 502 2.920076 AAACAGCCCAGCGGACCAAA 62.920 55.000 0.00 0.00 0.00 3.28
502 503 2.920076 AAAACAGCCCAGCGGACCAA 62.920 55.000 0.00 0.00 0.00 3.67
503 504 2.920076 AAAAACAGCCCAGCGGACCA 62.920 55.000 0.00 0.00 0.00 4.02
504 505 2.200337 AAAAACAGCCCAGCGGACC 61.200 57.895 0.00 0.00 0.00 4.46
505 506 3.443588 AAAAACAGCCCAGCGGAC 58.556 55.556 0.00 0.00 0.00 4.79
572 573 1.068125 GCACGGCCCGTTTATCTTTTT 60.068 47.619 5.76 0.00 38.32 1.94
573 574 0.524414 GCACGGCCCGTTTATCTTTT 59.476 50.000 5.76 0.00 38.32 2.27
574 575 1.310216 GGCACGGCCCGTTTATCTTT 61.310 55.000 5.76 0.00 44.06 2.52
575 576 1.747745 GGCACGGCCCGTTTATCTT 60.748 57.895 5.76 0.00 44.06 2.40
576 577 2.124860 GGCACGGCCCGTTTATCT 60.125 61.111 5.76 0.00 44.06 1.98
614 615 2.441532 CATGCCTGGGCCTGAAGG 60.442 66.667 12.58 8.09 38.70 3.46
615 616 2.441532 CCATGCCTGGGCCTGAAG 60.442 66.667 16.42 0.00 38.70 3.02
616 617 4.764771 GCCATGCCTGGGCCTGAA 62.765 66.667 16.42 0.00 45.87 3.02
656 657 2.320587 CGCTCTAATCGGGCCATGC 61.321 63.158 4.39 0.00 0.00 4.06
657 658 1.069765 ACGCTCTAATCGGGCCATG 59.930 57.895 4.39 0.00 0.00 3.66
658 659 1.069765 CACGCTCTAATCGGGCCAT 59.930 57.895 4.39 0.00 0.00 4.40
659 660 2.499205 CACGCTCTAATCGGGCCA 59.501 61.111 4.39 0.00 0.00 5.36
737 738 2.158623 TCAGTATAGCTGGCCAAATGGG 60.159 50.000 7.01 0.00 45.08 4.00
738 739 2.880890 GTCAGTATAGCTGGCCAAATGG 59.119 50.000 7.01 0.00 43.72 3.16
739 740 2.545526 CGTCAGTATAGCTGGCCAAATG 59.454 50.000 7.01 0.18 46.60 2.32
740 741 2.485479 CCGTCAGTATAGCTGGCCAAAT 60.485 50.000 7.01 3.30 46.60 2.32
741 742 1.134521 CCGTCAGTATAGCTGGCCAAA 60.135 52.381 7.01 0.00 46.60 3.28
742 743 0.464036 CCGTCAGTATAGCTGGCCAA 59.536 55.000 7.01 0.00 46.60 4.52
743 744 2.028125 GCCGTCAGTATAGCTGGCCA 62.028 60.000 4.71 4.71 46.60 5.36
744 745 1.301009 GCCGTCAGTATAGCTGGCC 60.301 63.158 0.00 0.00 46.60 5.36
745 746 0.598680 CTGCCGTCAGTATAGCTGGC 60.599 60.000 0.00 0.00 45.88 4.85
746 747 1.032794 TCTGCCGTCAGTATAGCTGG 58.967 55.000 0.00 0.00 45.08 4.85
747 748 3.753797 TCTATCTGCCGTCAGTATAGCTG 59.246 47.826 0.00 0.00 46.34 4.24
748 749 4.022413 TCTATCTGCCGTCAGTATAGCT 57.978 45.455 0.00 0.00 41.10 3.32
749 750 4.396478 TCATCTATCTGCCGTCAGTATAGC 59.604 45.833 0.00 0.00 41.10 2.97
750 751 6.459435 CCATCATCTATCTGCCGTCAGTATAG 60.459 46.154 0.00 0.55 41.10 1.31
751 752 5.358160 CCATCATCTATCTGCCGTCAGTATA 59.642 44.000 0.00 0.00 41.10 1.47
752 753 4.159321 CCATCATCTATCTGCCGTCAGTAT 59.841 45.833 0.00 0.00 41.10 2.12
753 754 3.507622 CCATCATCTATCTGCCGTCAGTA 59.492 47.826 0.00 0.00 41.10 2.74
754 755 2.298446 CCATCATCTATCTGCCGTCAGT 59.702 50.000 0.00 0.00 41.10 3.41
755 756 2.560105 TCCATCATCTATCTGCCGTCAG 59.440 50.000 0.00 0.00 41.67 3.51
756 757 2.597455 TCCATCATCTATCTGCCGTCA 58.403 47.619 0.00 0.00 0.00 4.35
757 758 3.519579 CATCCATCATCTATCTGCCGTC 58.480 50.000 0.00 0.00 0.00 4.79
758 759 2.235650 CCATCCATCATCTATCTGCCGT 59.764 50.000 0.00 0.00 0.00 5.68
759 760 2.419713 CCCATCCATCATCTATCTGCCG 60.420 54.545 0.00 0.00 0.00 5.69
760 761 2.092538 CCCCATCCATCATCTATCTGCC 60.093 54.545 0.00 0.00 0.00 4.85
761 762 2.575279 ACCCCATCCATCATCTATCTGC 59.425 50.000 0.00 0.00 0.00 4.26
762 763 3.054582 CCACCCCATCCATCATCTATCTG 60.055 52.174 0.00 0.00 0.00 2.90
763 764 3.187942 CCACCCCATCCATCATCTATCT 58.812 50.000 0.00 0.00 0.00 1.98
764 765 2.240667 CCCACCCCATCCATCATCTATC 59.759 54.545 0.00 0.00 0.00 2.08
765 766 2.281966 CCCACCCCATCCATCATCTAT 58.718 52.381 0.00 0.00 0.00 1.98
766 767 1.746157 CCCACCCCATCCATCATCTA 58.254 55.000 0.00 0.00 0.00 1.98
767 768 1.723128 GCCCACCCCATCCATCATCT 61.723 60.000 0.00 0.00 0.00 2.90
768 769 1.228675 GCCCACCCCATCCATCATC 60.229 63.158 0.00 0.00 0.00 2.92
769 770 1.702491 AGCCCACCCCATCCATCAT 60.702 57.895 0.00 0.00 0.00 2.45
770 771 2.287117 AGCCCACCCCATCCATCA 60.287 61.111 0.00 0.00 0.00 3.07
771 772 2.196776 CAGCCCACCCCATCCATC 59.803 66.667 0.00 0.00 0.00 3.51
772 773 3.432335 CCAGCCCACCCCATCCAT 61.432 66.667 0.00 0.00 0.00 3.41
802 803 2.359850 GCAGGCCGGACATCACAA 60.360 61.111 11.69 0.00 0.00 3.33
832 833 4.549458 CATCTTCCATCAACACAAACCAC 58.451 43.478 0.00 0.00 0.00 4.16
844 846 2.098117 CCAAGCGAAACCATCTTCCATC 59.902 50.000 0.00 0.00 0.00 3.51
901 903 7.117812 CAGCGTCTCTTTTCTTTATGGAAACTA 59.882 37.037 0.00 0.00 35.31 2.24
1029 1048 3.959991 GAGCACGAGGGGCTTGGAC 62.960 68.421 0.00 0.00 42.78 4.02
1104 1123 2.167861 GCTGCGGATCTTGTCGTCC 61.168 63.158 0.00 0.00 0.00 4.79
1301 1320 1.977854 TCCAGCAGTAAGAGCAAGGAA 59.022 47.619 0.00 0.00 36.13 3.36
1459 1478 4.693283 TGCTATGATAAAACAGAGGACCG 58.307 43.478 0.00 0.00 30.92 4.79
1466 1485 4.888038 TGCTGCTGCTATGATAAAACAG 57.112 40.909 17.00 0.00 40.48 3.16
1505 1524 8.153550 AGAAGATATAGCCACATAAAGGAAGTG 58.846 37.037 0.00 0.00 0.00 3.16
1517 1536 6.902771 TCTGGAGTAAGAAGATATAGCCAC 57.097 41.667 0.00 0.00 0.00 5.01
1586 1609 0.582005 GTTTGTCACTCACGTCTGGC 59.418 55.000 0.00 0.00 0.00 4.85
1605 1628 8.344831 TGACAATATCACAGTTTGTTCTTTCAG 58.655 33.333 0.00 0.00 33.92 3.02
1606 1629 8.219546 TGACAATATCACAGTTTGTTCTTTCA 57.780 30.769 0.00 0.00 33.92 2.69
1607 1630 9.334693 GATGACAATATCACAGTTTGTTCTTTC 57.665 33.333 0.00 0.00 41.24 2.62
1625 1648 9.295825 TCACTTGTATAAAAACAGGATGACAAT 57.704 29.630 0.00 0.00 39.69 2.71
1630 1653 9.994432 GAAGATCACTTGTATAAAAACAGGATG 57.006 33.333 0.00 0.00 38.24 3.51
1735 1758 6.833041 ACGAAAAAGGGGGAATAAAACAATT 58.167 32.000 0.00 0.00 0.00 2.32
1884 1907 0.815213 AGCAAAGCAGTCTCGTGCAA 60.815 50.000 0.00 0.00 46.60 4.08
2065 2088 0.592637 TCTTTTGTGCGACATGCTGG 59.407 50.000 0.00 0.00 46.63 4.85
2067 2090 1.308047 TGTCTTTTGTGCGACATGCT 58.692 45.000 0.00 0.00 46.63 3.79
2084 2107 4.632153 AGACAGAAGAAGTTATGCGTTGT 58.368 39.130 0.00 0.00 0.00 3.32
2113 2136 5.519927 ACCAAGAACAGAAAAGAAAAATGCG 59.480 36.000 0.00 0.00 0.00 4.73
2117 2140 8.585018 AGAGAAACCAAGAACAGAAAAGAAAAA 58.415 29.630 0.00 0.00 0.00 1.94
2122 2145 6.540189 TGAGAGAGAAACCAAGAACAGAAAAG 59.460 38.462 0.00 0.00 0.00 2.27
2337 2362 2.099427 GCGTAGGTAGCAGAGCTTACTT 59.901 50.000 0.00 0.00 40.44 2.24
2447 2506 8.863049 CAAATGACCTTAATCAATTGTGCTAAC 58.137 33.333 5.13 0.00 35.59 2.34
2547 2606 5.547666 TCCAGGCCTGCATATTAAGATTAGA 59.452 40.000 28.39 10.75 0.00 2.10
2750 2809 1.405105 GCAAAATGCGCAATCCTAGGA 59.595 47.619 17.11 15.46 31.71 2.94
2926 2985 2.584835 AGCATACCTTGGAAGCAACA 57.415 45.000 0.00 0.00 0.00 3.33
3016 3075 7.659799 ACCCTTTTTGCAAGGTTTATGTTTATC 59.340 33.333 0.00 0.00 35.65 1.75
3180 3239 6.621394 TGGAGACTAGGCTATACCATAAACT 58.379 40.000 0.00 0.00 43.14 2.66
3255 3314 2.669391 GCTTCCAATGAGCGAAAACTGG 60.669 50.000 0.00 0.00 0.00 4.00
3291 3350 7.396540 AGTCAGAGAACAACTGAAATGTTTT 57.603 32.000 0.00 0.00 44.29 2.43
3303 3362 7.968956 CGAGCTACTAATAAAGTCAGAGAACAA 59.031 37.037 0.00 0.00 39.80 2.83
3451 3512 8.314751 TCTTTTGTGGGTTCATTTCTTACAAAA 58.685 29.630 0.00 0.00 41.44 2.44
3485 3546 2.092323 AGAAATGAACTTTAGCCCGCC 58.908 47.619 0.00 0.00 0.00 6.13
3500 3561 8.504005 CAAACAAATAAGGTACGTCAGAGAAAT 58.496 33.333 0.00 0.00 0.00 2.17
3533 3594 6.530019 AAAAAGATAGCAAATACACCCTGG 57.470 37.500 0.00 0.00 0.00 4.45
3584 3645 9.555727 GGACTTATAAAAGAAGCACATGGTATA 57.444 33.333 0.00 0.00 36.50 1.47
3908 3989 7.919621 TGTTACGGTTGTTTAACATTAAAAGGG 59.080 33.333 0.00 0.00 38.58 3.95
4025 4106 7.518370 GCAGTACAAATTATGTGAATACGAGGG 60.518 40.741 0.00 0.00 43.77 4.30
4066 4147 3.072038 TGCCCCATCAAGTATGATCAGAG 59.928 47.826 0.09 0.00 44.53 3.35
4084 4165 6.282167 GTCTACTATTCCTTACTCTTTGCCC 58.718 44.000 0.00 0.00 0.00 5.36
4150 4231 9.261035 AGACGTATGGATAAGGAAATCAGATAT 57.739 33.333 0.00 0.00 0.00 1.63
4172 4569 5.334414 CCTCCAGTTCAAAATCTCAAAGACG 60.334 44.000 0.00 0.00 0.00 4.18
4268 4665 3.317993 GCCGGTGCATAAACCTAATCAAT 59.682 43.478 1.90 0.00 38.14 2.57
4317 4714 1.172180 GCCTTACCACTTGTGCTGCA 61.172 55.000 0.00 0.00 0.00 4.41
4378 4777 3.437428 CACGCACCATTACCATTTCATG 58.563 45.455 0.00 0.00 0.00 3.07
4396 4795 5.444877 CCTGCAAATCAAATACAAATGCACG 60.445 40.000 0.00 0.00 37.40 5.34
4514 4915 4.621991 ACGAGGAAACAGATATTGATCCG 58.378 43.478 0.00 0.00 39.61 4.18
4523 4924 3.393800 CACAGACAACGAGGAAACAGAT 58.606 45.455 0.00 0.00 0.00 2.90
4536 4937 0.687920 TATTCCACGGCCACAGACAA 59.312 50.000 2.24 0.00 0.00 3.18
4583 4989 7.231317 TCACAATAAAAGCAAGACAGGATTTCT 59.769 33.333 0.00 0.00 0.00 2.52
4611 5017 8.034215 CCTTGTAAATTCTTGATTGCCACAATA 58.966 33.333 0.00 0.00 30.68 1.90
4628 5034 9.320295 TGAAGAAAAATGTATCCCCTTGTAAAT 57.680 29.630 0.00 0.00 0.00 1.40
4656 5062 7.121759 GCCACTACGAGTATATATCAAGGGTTA 59.878 40.741 0.00 0.00 0.00 2.85
4675 5081 4.221041 GGAGATAGGTATGGAAGCCACTAC 59.779 50.000 0.00 0.00 35.80 2.73
4762 5168 7.235399 ACCATAGAAGGATTGTTCAATGGTTTT 59.765 33.333 2.63 0.00 35.40 2.43
4770 5176 9.699410 ATGAAAATACCATAGAAGGATTGTTCA 57.301 29.630 0.00 0.00 0.00 3.18
4832 5238 9.715121 ATTCAATTTGAACTGCTAAAACATCAT 57.285 25.926 13.80 0.00 39.45 2.45
4833 5239 9.545105 AATTCAATTTGAACTGCTAAAACATCA 57.455 25.926 13.80 0.00 39.45 3.07
4834 5240 9.801714 CAATTCAATTTGAACTGCTAAAACATC 57.198 29.630 13.80 0.00 39.45 3.06
4844 5250 7.998212 GTCGTTTTAGCAATTCAATTTGAACTG 59.002 33.333 14.55 14.55 39.45 3.16
4845 5251 7.704472 TGTCGTTTTAGCAATTCAATTTGAACT 59.296 29.630 13.80 9.42 39.45 3.01
4846 5252 7.836512 TGTCGTTTTAGCAATTCAATTTGAAC 58.163 30.769 13.80 2.45 39.45 3.18
4847 5253 7.993821 TGTCGTTTTAGCAATTCAATTTGAA 57.006 28.000 13.88 13.88 41.09 2.69
4848 5254 7.651304 ACATGTCGTTTTAGCAATTCAATTTGA 59.349 29.630 0.00 0.00 0.00 2.69
4849 5255 7.786114 ACATGTCGTTTTAGCAATTCAATTTG 58.214 30.769 0.00 0.00 0.00 2.32
4850 5256 7.945033 ACATGTCGTTTTAGCAATTCAATTT 57.055 28.000 0.00 0.00 0.00 1.82
4851 5257 9.638239 AATACATGTCGTTTTAGCAATTCAATT 57.362 25.926 0.00 0.00 0.00 2.32
4854 5260 9.715123 CATAATACATGTCGTTTTAGCAATTCA 57.285 29.630 0.00 0.00 0.00 2.57
4855 5261 9.169468 CCATAATACATGTCGTTTTAGCAATTC 57.831 33.333 0.00 0.00 0.00 2.17
4856 5262 8.682710 ACCATAATACATGTCGTTTTAGCAATT 58.317 29.630 0.00 0.00 0.00 2.32
4857 5263 8.220755 ACCATAATACATGTCGTTTTAGCAAT 57.779 30.769 0.00 0.00 0.00 3.56
4869 5275 4.485875 TCCCTCCGTACCATAATACATGT 58.514 43.478 2.69 2.69 0.00 3.21
4873 5279 9.061435 GTATATACTCCCTCCGTACCATAATAC 57.939 40.741 5.58 0.00 0.00 1.89
4881 5287 6.155136 GCTTTTGTATATACTCCCTCCGTAC 58.845 44.000 13.89 0.00 0.00 3.67
4884 5290 4.039973 TGGCTTTTGTATATACTCCCTCCG 59.960 45.833 13.89 0.00 0.00 4.63
4889 5295 6.096282 TGGCTTTTGGCTTTTGTATATACTCC 59.904 38.462 13.89 7.74 46.20 3.85
4891 5297 7.475137 TTGGCTTTTGGCTTTTGTATATACT 57.525 32.000 13.89 0.00 46.20 2.12
4892 5298 8.541133 TTTTGGCTTTTGGCTTTTGTATATAC 57.459 30.769 5.89 5.89 46.20 1.47
4897 5303 5.091261 TCTTTTGGCTTTTGGCTTTTGTA 57.909 34.783 0.00 0.00 46.20 2.41
4898 5304 3.949132 TCTTTTGGCTTTTGGCTTTTGT 58.051 36.364 0.00 0.00 46.20 2.83
4899 5305 4.961435 TTCTTTTGGCTTTTGGCTTTTG 57.039 36.364 0.00 0.00 46.20 2.44
4900 5306 5.252547 TCTTTCTTTTGGCTTTTGGCTTTT 58.747 33.333 0.00 0.00 46.20 2.27
4901 5307 4.842574 TCTTTCTTTTGGCTTTTGGCTTT 58.157 34.783 0.00 0.00 46.20 3.51
4902 5308 4.486125 TCTTTCTTTTGGCTTTTGGCTT 57.514 36.364 0.00 0.00 46.20 4.35
4903 5309 4.162131 TCTTCTTTCTTTTGGCTTTTGGCT 59.838 37.500 0.00 0.00 46.20 4.75
4904 5310 4.441792 TCTTCTTTCTTTTGGCTTTTGGC 58.558 39.130 0.00 0.00 46.23 4.52
4905 5311 6.983474 TTTCTTCTTTCTTTTGGCTTTTGG 57.017 33.333 0.00 0.00 0.00 3.28
5135 5543 5.135383 TGCAAGGAATGGATGGATCTTTAG 58.865 41.667 0.00 0.00 0.00 1.85
5172 5581 7.758528 GCTTTAATAATCATCATCATGGGAAGC 59.241 37.037 0.00 0.00 0.00 3.86
5292 5710 3.119245 GCATCATGTTCATGCCTCTTGTT 60.119 43.478 6.59 0.00 40.79 2.83
5293 5711 2.426024 GCATCATGTTCATGCCTCTTGT 59.574 45.455 6.59 0.00 40.79 3.16
5348 5769 6.413269 CAAATTTAGTTGTGTTTTGCTCTGC 58.587 36.000 0.00 0.00 0.00 4.26
5369 5790 1.667830 CGCTCTTCAGGACGGCAAA 60.668 57.895 0.00 0.00 0.00 3.68
5371 5792 4.069232 CCGCTCTTCAGGACGGCA 62.069 66.667 0.00 0.00 39.08 5.69
5372 5793 3.708220 CTCCGCTCTTCAGGACGGC 62.708 68.421 0.00 0.00 45.23 5.68
5380 5801 0.458025 CGTTGGTACCTCCGCTCTTC 60.458 60.000 14.36 0.00 39.52 2.87
5382 5803 2.348888 CCGTTGGTACCTCCGCTCT 61.349 63.158 14.36 0.00 39.52 4.09
5383 5804 2.183555 CCGTTGGTACCTCCGCTC 59.816 66.667 14.36 0.00 39.52 5.03
5384 5805 4.078516 GCCGTTGGTACCTCCGCT 62.079 66.667 14.36 0.00 39.52 5.52
5386 5807 4.807039 CCGCCGTTGGTACCTCCG 62.807 72.222 14.36 14.43 39.52 4.63
5387 5808 3.366739 CTCCGCCGTTGGTACCTCC 62.367 68.421 14.36 2.25 0.00 4.30
5388 5809 2.183555 CTCCGCCGTTGGTACCTC 59.816 66.667 14.36 5.55 0.00 3.85
5389 5810 2.283388 TCTCCGCCGTTGGTACCT 60.283 61.111 14.36 0.00 0.00 3.08
5390 5811 2.183555 CTCTCCGCCGTTGGTACC 59.816 66.667 4.43 4.43 0.00 3.34
5391 5812 2.508663 GCTCTCCGCCGTTGGTAC 60.509 66.667 0.00 0.00 0.00 3.34
5392 5813 4.124351 CGCTCTCCGCCGTTGGTA 62.124 66.667 0.00 0.00 34.21 3.25
5399 5820 3.902086 GTACCTCCGCTCTCCGCC 61.902 72.222 0.00 0.00 35.03 6.13
5400 5821 3.902086 GGTACCTCCGCTCTCCGC 61.902 72.222 4.06 0.00 35.03 5.54
5401 5822 1.601419 TTTGGTACCTCCGCTCTCCG 61.601 60.000 14.36 0.00 39.52 4.63
5402 5823 0.175989 CTTTGGTACCTCCGCTCTCC 59.824 60.000 14.36 0.00 39.52 3.71
5403 5824 0.175989 CCTTTGGTACCTCCGCTCTC 59.824 60.000 14.36 0.00 39.52 3.20
5404 5825 1.900545 GCCTTTGGTACCTCCGCTCT 61.901 60.000 14.36 0.00 39.52 4.09
5405 5826 1.449778 GCCTTTGGTACCTCCGCTC 60.450 63.158 14.36 0.00 39.52 5.03
5406 5827 2.669240 GCCTTTGGTACCTCCGCT 59.331 61.111 14.36 0.00 39.52 5.52
5407 5828 2.818274 CGCCTTTGGTACCTCCGC 60.818 66.667 14.36 8.46 39.52 5.54
5408 5829 2.125269 CCGCCTTTGGTACCTCCG 60.125 66.667 14.36 8.16 39.52 4.63
5409 5830 1.221021 CTCCGCCTTTGGTACCTCC 59.779 63.158 14.36 0.00 0.00 4.30
5410 5831 1.449778 GCTCCGCCTTTGGTACCTC 60.450 63.158 14.36 0.00 0.00 3.85
5411 5832 1.489560 AAGCTCCGCCTTTGGTACCT 61.490 55.000 14.36 0.00 0.00 3.08
5412 5833 1.002502 AAGCTCCGCCTTTGGTACC 60.003 57.895 4.43 4.43 0.00 3.34
5413 5834 1.923227 GCAAGCTCCGCCTTTGGTAC 61.923 60.000 0.00 0.00 0.00 3.34
5414 5835 1.674322 GCAAGCTCCGCCTTTGGTA 60.674 57.895 0.00 0.00 0.00 3.25
5415 5836 2.985847 GCAAGCTCCGCCTTTGGT 60.986 61.111 0.00 0.00 0.00 3.67
5416 5837 2.674380 AGCAAGCTCCGCCTTTGG 60.674 61.111 4.54 0.00 0.00 3.28
5417 5838 1.799258 AACAGCAAGCTCCGCCTTTG 61.799 55.000 4.54 0.32 0.00 2.77
5418 5839 1.529244 AACAGCAAGCTCCGCCTTT 60.529 52.632 4.54 0.00 0.00 3.11
5419 5840 2.113986 AACAGCAAGCTCCGCCTT 59.886 55.556 4.54 0.00 0.00 4.35
5420 5841 2.111999 TACAACAGCAAGCTCCGCCT 62.112 55.000 4.54 0.00 0.00 5.52
5421 5842 1.639298 CTACAACAGCAAGCTCCGCC 61.639 60.000 4.54 0.00 0.00 6.13
5422 5843 1.790387 CTACAACAGCAAGCTCCGC 59.210 57.895 0.00 0.00 0.00 5.54
5432 5853 6.314648 CCATATATACCATGCTGCTACAACAG 59.685 42.308 0.00 0.00 40.80 3.16
5433 5854 6.172630 CCATATATACCATGCTGCTACAACA 58.827 40.000 0.00 0.00 0.00 3.33
5434 5855 6.092670 CACCATATATACCATGCTGCTACAAC 59.907 42.308 0.00 0.00 0.00 3.32
5435 5856 6.172630 CACCATATATACCATGCTGCTACAA 58.827 40.000 0.00 0.00 0.00 2.41
5436 5857 5.338300 CCACCATATATACCATGCTGCTACA 60.338 44.000 0.00 0.00 0.00 2.74
5437 5858 5.118990 CCACCATATATACCATGCTGCTAC 58.881 45.833 0.00 0.00 0.00 3.58
5438 5859 4.384098 GCCACCATATATACCATGCTGCTA 60.384 45.833 0.00 0.00 0.00 3.49
5439 5860 3.623203 GCCACCATATATACCATGCTGCT 60.623 47.826 0.00 0.00 0.00 4.24
5440 5861 2.684881 GCCACCATATATACCATGCTGC 59.315 50.000 0.00 0.00 0.00 5.25
5441 5862 3.943381 CTGCCACCATATATACCATGCTG 59.057 47.826 0.00 0.00 0.00 4.41
5442 5863 3.623203 GCTGCCACCATATATACCATGCT 60.623 47.826 0.00 0.00 0.00 3.79
5443 5864 2.684881 GCTGCCACCATATATACCATGC 59.315 50.000 0.00 0.00 0.00 4.06
5444 5865 2.938451 CGCTGCCACCATATATACCATG 59.062 50.000 0.00 0.00 0.00 3.66
5445 5866 2.680805 GCGCTGCCACCATATATACCAT 60.681 50.000 0.00 0.00 0.00 3.55
5446 5867 1.338674 GCGCTGCCACCATATATACCA 60.339 52.381 0.00 0.00 0.00 3.25
5447 5868 1.369625 GCGCTGCCACCATATATACC 58.630 55.000 0.00 0.00 0.00 2.73
5459 5880 2.071844 TACTATCTGTCGGCGCTGCC 62.072 60.000 12.58 0.00 46.75 4.85
5460 5881 0.248907 TTACTATCTGTCGGCGCTGC 60.249 55.000 12.58 7.57 0.00 5.25
5461 5882 2.120232 CTTTACTATCTGTCGGCGCTG 58.880 52.381 10.86 10.86 0.00 5.18
5462 5883 1.067212 CCTTTACTATCTGTCGGCGCT 59.933 52.381 7.64 0.00 0.00 5.92
5463 5884 1.488527 CCTTTACTATCTGTCGGCGC 58.511 55.000 0.00 0.00 0.00 6.53
5464 5885 1.679680 TCCCTTTACTATCTGTCGGCG 59.320 52.381 0.00 0.00 0.00 6.46
5465 5886 2.694109 ACTCCCTTTACTATCTGTCGGC 59.306 50.000 0.00 0.00 0.00 5.54
5466 5887 3.952323 TGACTCCCTTTACTATCTGTCGG 59.048 47.826 0.00 0.00 0.00 4.79
5467 5888 5.578005 TTGACTCCCTTTACTATCTGTCG 57.422 43.478 0.00 0.00 0.00 4.35
5468 5889 6.937392 ACTTTGACTCCCTTTACTATCTGTC 58.063 40.000 0.00 0.00 0.00 3.51
5469 5890 6.070710 GGACTTTGACTCCCTTTACTATCTGT 60.071 42.308 0.00 0.00 0.00 3.41
5470 5891 6.342111 GGACTTTGACTCCCTTTACTATCTG 58.658 44.000 0.00 0.00 0.00 2.90
5471 5892 6.547930 GGACTTTGACTCCCTTTACTATCT 57.452 41.667 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.