AutoCloner

Multiple sequence alignment - TraesCS7A01G231100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G231100	chr7A	100.000	4016	0	0	1	4016	201981659	201985674	0.000000e+00	7417
1	TraesCS7A01G231100	chr7A	95.698	767	28	3	1	765	118437385	118438148	0.000000e+00	1229
2	TraesCS7A01G231100	chr7A	91.566	166	11	1	759	921	118438197	118438362	4.040000e-55	226
3	TraesCS7A01G231100	chr7D	96.655	3079	78	6	948	4016	192367078	192370141	0.000000e+00	5092
4	TraesCS7A01G231100	chr7B	96.009	3082	97	11	948	4016	155466770	155469838	0.000000e+00	4987
5	TraesCS7A01G231100	chr6B	91.667	960	42	5	1	922	701484768	701485727	0.000000e+00	1295
6	TraesCS7A01G231100	chr6B	93.657	804	42	6	1	797	648450199	648449398	0.000000e+00	1194
7	TraesCS7A01G231100	chr2B	91.226	946	58	3	1	923	629690264	629691207	0.000000e+00	1264
8	TraesCS7A01G231100	chr3B	92.097	911	48	8	1	887	456976305	456977215	0.000000e+00	1262
9	TraesCS7A01G231100	chr4A	92.005	888	42	9	1	859	642547028	642547915	0.000000e+00	1219
10	TraesCS7A01G231100	chr4A	95.052	768	35	1	1	765	66550671	66551438	0.000000e+00	1205
11	TraesCS7A01G231100	chr5D	95.189	769	27	6	1	765	419286612	419287374	0.000000e+00	1206
12	TraesCS7A01G231100	chr5D	92.763	152	10	1	770	921	419287422	419287572	6.760000e-53	219
13	TraesCS7A01G231100	chr1A	93.672	806	46	3	1	802	514976227	514975423	0.000000e+00	1201
14	TraesCS7A01G231100	chr5A	94.177	790	37	5	1	782	676825455	676826243	0.000000e+00	1195
15	TraesCS7A01G231100	chr5A	93.985	798	32	8	1	792	573803559	573804346	0.000000e+00	1194
16	TraesCS7A01G231100	chr5A	93.325	809	40	10	1	808	459426699	459425904	0.000000e+00	1182
17	TraesCS7A01G231100	chr5A	90.588	170	9	1	759	921	459425891	459425722	6.760000e-53	219
18	TraesCS7A01G231100	chr4D	92.356	641	34	3	3294	3934	167197875	167197250	0.000000e+00	898
19	TraesCS7A01G231100	chr1B	91.279	172	13	2	759	928	52712119	52711948	2.410000e-57	233
20	TraesCS7A01G231100	chrUn	91.603	131	9	2	759	889	308777532	308777660	3.190000e-41	180

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G231100	chr7A	201981659	201985674	4015	False	7417.0	7417	100.0000	1	4016	1	chr7A.!!$F1	4015
1	TraesCS7A01G231100	chr7A	118437385	118438362	977	False	727.5	1229	93.6320	1	921	2	chr7A.!!$F2	920
2	TraesCS7A01G231100	chr7D	192367078	192370141	3063	False	5092.0	5092	96.6550	948	4016	1	chr7D.!!$F1	3068
3	TraesCS7A01G231100	chr7B	155466770	155469838	3068	False	4987.0	4987	96.0090	948	4016	1	chr7B.!!$F1	3068
4	TraesCS7A01G231100	chr6B	701484768	701485727	959	False	1295.0	1295	91.6670	1	922	1	chr6B.!!$F1	921
5	TraesCS7A01G231100	chr6B	648449398	648450199	801	True	1194.0	1194	93.6570	1	797	1	chr6B.!!$R1	796
6	TraesCS7A01G231100	chr2B	629690264	629691207	943	False	1264.0	1264	91.2260	1	923	1	chr2B.!!$F1	922
7	TraesCS7A01G231100	chr3B	456976305	456977215	910	False	1262.0	1262	92.0970	1	887	1	chr3B.!!$F1	886
8	TraesCS7A01G231100	chr4A	642547028	642547915	887	False	1219.0	1219	92.0050	1	859	1	chr4A.!!$F2	858
9	TraesCS7A01G231100	chr4A	66550671	66551438	767	False	1205.0	1205	95.0520	1	765	1	chr4A.!!$F1	764
10	TraesCS7A01G231100	chr5D	419286612	419287572	960	False	712.5	1206	93.9760	1	921	2	chr5D.!!$F1	920
11	TraesCS7A01G231100	chr1A	514975423	514976227	804	True	1201.0	1201	93.6720	1	802	1	chr1A.!!$R1	801
12	TraesCS7A01G231100	chr5A	676825455	676826243	788	False	1195.0	1195	94.1770	1	782	1	chr5A.!!$F2	781
13	TraesCS7A01G231100	chr5A	573803559	573804346	787	False	1194.0	1194	93.9850	1	792	1	chr5A.!!$F1	791
14	TraesCS7A01G231100	chr5A	459425722	459426699	977	True	700.5	1182	91.9565	1	921	2	chr5A.!!$R1	920
15	TraesCS7A01G231100	chr4D	167197250	167197875	625	True	898.0	898	92.3560	3294	3934	1	chr4D.!!$R1	640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
946	1098	0.179119	CTAAACCCCGCCGAGTGTAG	60.179	60.0	0.0	0.0	0.0	2.74	F
2082	2234	2.092267	TGGAAGATGTGGGGATGTCATG	60.092	50.0	0.0	0.0	0.0	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2298	2450	0.179134	CTAACTTCACCGCCCTCGAG	60.179	60.0	5.13	5.13	38.1	4.04	R
3737	3902	0.106217	GCAAATAGGGGCCAGCCTTA	60.106	55.0	4.39	2.43	36.1	2.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	3.296322	TCGTTTTTGTCATTGGCATCC	57.704	42.857	0.00	0.00	0.00	3.51
54	55	2.625314	TCGTTTTTGTCATTGGCATCCA	59.375	40.909	0.00	0.00	0.00	3.41
412	413	0.949397	TCGTCGCTACCGCTATCATT	59.051	50.000	0.00	0.00	0.00	2.57
447	448	8.441311	TCCTATTTCAGCCTCAATCTATACAT	57.559	34.615	0.00	0.00	0.00	2.29
573	574	0.320683	CAGACATGAGGCGGTTGTCA	60.321	55.000	15.58	0.00	41.71	3.58
720	746	4.070552	GGAGGCGAGTGAGGCGTT	62.071	66.667	0.00	0.00	41.99	4.84
726	752	0.306533	GCGAGTGAGGCGTTTTGAAA	59.693	50.000	0.00	0.00	0.00	2.69
900	1047	2.770232	CCCTTTATACGTCTTGGGAGGT	59.230	50.000	0.00	0.00	42.28	3.85
923	1075	2.322658	TGTACCGAAGACCACCTCTTT	58.677	47.619	0.00	0.00	39.53	2.52
924	1076	2.701951	TGTACCGAAGACCACCTCTTTT	59.298	45.455	0.00	0.00	39.53	2.27
925	1077	2.545537	ACCGAAGACCACCTCTTTTC	57.454	50.000	0.00	0.00	39.53	2.29
926	1078	2.047830	ACCGAAGACCACCTCTTTTCT	58.952	47.619	0.00	0.00	39.53	2.52
927	1079	2.037381	ACCGAAGACCACCTCTTTTCTC	59.963	50.000	0.00	0.00	39.53	2.87
928	1080	2.300437	CCGAAGACCACCTCTTTTCTCT	59.700	50.000	0.00	0.00	39.53	3.10
929	1081	3.510360	CCGAAGACCACCTCTTTTCTCTA	59.490	47.826	0.00	0.00	39.53	2.43
930	1082	4.021368	CCGAAGACCACCTCTTTTCTCTAA	60.021	45.833	0.00	0.00	39.53	2.10
931	1083	5.510861	CCGAAGACCACCTCTTTTCTCTAAA	60.511	44.000	0.00	0.00	39.53	1.85
932	1084	5.405873	CGAAGACCACCTCTTTTCTCTAAAC	59.594	44.000	0.00	0.00	39.53	2.01
933	1085	5.230323	AGACCACCTCTTTTCTCTAAACC	57.770	43.478	0.00	0.00	0.00	3.27
934	1086	4.041815	AGACCACCTCTTTTCTCTAAACCC	59.958	45.833	0.00	0.00	0.00	4.11
935	1087	3.074094	ACCACCTCTTTTCTCTAAACCCC	59.926	47.826	0.00	0.00	0.00	4.95
936	1088	3.335579	CACCTCTTTTCTCTAAACCCCG	58.664	50.000	0.00	0.00	0.00	5.73
937	1089	2.290134	ACCTCTTTTCTCTAAACCCCGC	60.290	50.000	0.00	0.00	0.00	6.13
938	1090	2.357075	CTCTTTTCTCTAAACCCCGCC	58.643	52.381	0.00	0.00	0.00	6.13
939	1091	1.084289	CTTTTCTCTAAACCCCGCCG	58.916	55.000	0.00	0.00	0.00	6.46
940	1092	0.686224	TTTTCTCTAAACCCCGCCGA	59.314	50.000	0.00	0.00	0.00	5.54
941	1093	0.248289	TTTCTCTAAACCCCGCCGAG	59.752	55.000	0.00	0.00	0.00	4.63
942	1094	0.901580	TTCTCTAAACCCCGCCGAGT	60.902	55.000	0.00	0.00	0.00	4.18
943	1095	1.153628	CTCTAAACCCCGCCGAGTG	60.154	63.158	0.00	0.00	0.00	3.51
944	1096	1.885163	CTCTAAACCCCGCCGAGTGT	61.885	60.000	0.00	0.00	0.00	3.55
945	1097	0.611618	TCTAAACCCCGCCGAGTGTA	60.612	55.000	0.00	0.00	0.00	2.90
946	1098	0.179119	CTAAACCCCGCCGAGTGTAG	60.179	60.000	0.00	0.00	0.00	2.74
950	1102	2.417516	CCCGCCGAGTGTAGATGG	59.582	66.667	0.00	0.00	0.00	3.51
1364	1516	2.590575	CCGTGCCAAAGACACCGT	60.591	61.111	0.00	0.00	34.45	4.83
1647	1799	2.319472	GCAACGTTTTCTTGCATCCTC	58.681	47.619	0.00	0.00	43.04	3.71
1665	1817	2.689983	CCTCAAGGTATTTGATGCACCC	59.310	50.000	0.00	0.00	44.48	4.61
1722	1874	5.759059	TGCTTATTGAAGATGGGAACTGAT	58.241	37.500	0.00	0.00	34.25	2.90
1770	1922	6.096987	CCCTTATAGCGATGTATGGTAGATGT	59.903	42.308	8.24	0.00	0.00	3.06
1917	2069	3.822735	AGATGGTCATGGAAAATATGGCG	59.177	43.478	0.00	0.00	31.06	5.69
1965	2117	4.247267	ACTGCAGGTTTGTTCATCATTG	57.753	40.909	19.93	0.00	0.00	2.82
1978	2130	2.573009	TCATCATTGGGACAGCTGAGAA	59.427	45.455	23.35	7.30	42.39	2.87
2064	2216	3.760738	TGCAACCATCACTGTTTATGGA	58.239	40.909	20.38	0.00	44.62	3.41
2081	2233	2.207988	TGGAAGATGTGGGGATGTCAT	58.792	47.619	0.00	0.00	0.00	3.06
2082	2234	2.092267	TGGAAGATGTGGGGATGTCATG	60.092	50.000	0.00	0.00	0.00	3.07
2101	2253	8.374327	TGTCATGAGTGCAGAGATTATATTTG	57.626	34.615	0.00	0.00	0.00	2.32
2107	2259	7.928167	TGAGTGCAGAGATTATATTTGATCGTT	59.072	33.333	0.00	0.00	0.00	3.85
2155	2307	4.573201	GGACGGCATTATTAACTTGCTACA	59.427	41.667	0.00	0.00	36.62	2.74
2157	2309	4.938832	ACGGCATTATTAACTTGCTACACA	59.061	37.500	6.19	0.00	36.62	3.72
2298	2450	1.873486	GCTGTTGGGTGGCAAATTCAC	60.873	52.381	0.00	0.00	34.61	3.18
2306	2458	0.960364	TGGCAAATTCACTCGAGGGC	60.960	55.000	18.41	9.67	0.00	5.19
2415	2567	7.811236	GCACTGAAGATTTTCAATTCAATGAGA	59.189	33.333	0.00	0.00	42.48	3.27
2499	2651	2.626743	GGCAGCCATTCAGCTATTTGAT	59.373	45.455	6.55	0.00	42.61	2.57
2522	2674	5.308014	TCTGATGCAAGAAGAAGCAGTTTA	58.692	37.500	0.00	0.00	44.94	2.01
2700	2852	4.082354	GCTGGAAGATTTTCTGATGCACTT	60.082	41.667	0.00	0.00	34.07	3.16
2988	3140	9.890352	GGAGAAGAATTTTCAGATAATACATGC	57.110	33.333	0.00	0.00	0.00	4.06
3124	3276	3.181462	TGTGAGATTGACTGACTGCTTGT	60.181	43.478	0.00	0.00	33.98	3.16
3171	3323	4.234550	AGCCCAATGTCATATCTCCACTA	58.765	43.478	0.00	0.00	0.00	2.74
3266	3429	8.418597	AAGGTGAGATACTCTGTTACTAACAA	57.581	34.615	3.26	0.00	41.61	2.83
3299	3464	5.284861	TGCAAACAGAGTTCTTACCACTA	57.715	39.130	0.00	0.00	0.00	2.74
3300	3465	5.865085	TGCAAACAGAGTTCTTACCACTAT	58.135	37.500	0.00	0.00	0.00	2.12
3668	3833	0.863799	ATGTGATGATGCGTGCGATC	59.136	50.000	0.00	0.00	0.00	3.69
3719	3884	2.280552	ACGTCAGCCCGCTTCCTTA	61.281	57.895	0.00	0.00	0.00	2.69
3767	3938	4.445735	GGCCCCTATTTGCTGTAATCAGTA	60.446	45.833	0.00	0.00	43.05	2.74
3781	3952	8.283291	GCTGTAATCAGTACATTTTATACTGGC	58.717	37.037	11.23	3.60	46.39	4.85
3806	3977	2.491675	AGTTTAGTGGGCCTTAGCAC	57.508	50.000	4.53	1.47	45.43	4.40
3865	4036	8.456904	TGTAAGTAACTTATTAGTCAACTGCG	57.543	34.615	1.84	0.00	33.31	5.18
3934	4105	0.839946	ATCCATGACTGGGCTACCAC	59.160	55.000	0.00	0.00	43.37	4.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	1.902938	TTTCGTGGATGCCAATGACA	58.097	45.000	0.00	0.00	34.18	3.58
412	413	5.084519	AGGCTGAAATAGGATATGACGGTA	58.915	41.667	0.00	0.00	0.00	4.02
573	574	3.900892	CGGCAGCTCGTATCCGGT	61.901	66.667	0.00	0.00	38.35	5.28
710	736	3.506067	CCCTATTTTCAAAACGCCTCACT	59.494	43.478	0.00	0.00	0.00	3.41
720	746	2.780714	TCGGCGAACCCTATTTTCAAA	58.219	42.857	7.35	0.00	0.00	2.69
726	752	0.462789	AACGATCGGCGAACCCTATT	59.537	50.000	20.98	0.00	44.57	1.73
900	1047	1.342174	GAGGTGGTCTTCGGTACAACA	59.658	52.381	0.00	0.00	0.00	3.33
923	1075	0.901580	ACTCGGCGGGGTTTAGAGAA	60.902	55.000	13.20	0.00	33.53	2.87
924	1076	1.304713	ACTCGGCGGGGTTTAGAGA	60.305	57.895	13.20	0.00	33.53	3.10
925	1077	1.153628	CACTCGGCGGGGTTTAGAG	60.154	63.158	13.20	0.00	35.28	2.43
926	1078	0.611618	TACACTCGGCGGGGTTTAGA	60.612	55.000	13.20	0.00	0.00	2.10
927	1079	0.179119	CTACACTCGGCGGGGTTTAG	60.179	60.000	13.20	11.52	0.00	1.85
928	1080	0.611618	TCTACACTCGGCGGGGTTTA	60.612	55.000	13.20	5.74	0.00	2.01
929	1081	1.262640	ATCTACACTCGGCGGGGTTT	61.263	55.000	13.20	4.79	0.00	3.27
930	1082	1.684734	ATCTACACTCGGCGGGGTT	60.685	57.895	13.20	0.00	0.00	4.11
931	1083	2.043248	ATCTACACTCGGCGGGGT	60.043	61.111	13.20	10.27	0.00	4.95
932	1084	2.417516	CATCTACACTCGGCGGGG	59.582	66.667	13.20	3.52	0.00	5.73
933	1085	2.076622	CTCCATCTACACTCGGCGGG	62.077	65.000	4.58	4.58	0.00	6.13
934	1086	1.360551	CTCCATCTACACTCGGCGG	59.639	63.158	7.21	0.00	0.00	6.13
935	1087	1.299468	GCTCCATCTACACTCGGCG	60.299	63.158	0.00	0.00	0.00	6.46
936	1088	1.299468	CGCTCCATCTACACTCGGC	60.299	63.158	0.00	0.00	0.00	5.54
937	1089	1.299468	GCGCTCCATCTACACTCGG	60.299	63.158	0.00	0.00	0.00	4.63
938	1090	1.655654	CGCGCTCCATCTACACTCG	60.656	63.158	5.56	0.00	0.00	4.18
939	1091	0.592754	GTCGCGCTCCATCTACACTC	60.593	60.000	5.56	0.00	0.00	3.51
940	1092	1.313091	TGTCGCGCTCCATCTACACT	61.313	55.000	5.56	0.00	0.00	3.55
941	1093	1.138883	TGTCGCGCTCCATCTACAC	59.861	57.895	5.56	0.00	0.00	2.90
942	1094	1.138883	GTGTCGCGCTCCATCTACA	59.861	57.895	5.56	0.00	0.00	2.74
943	1095	0.867753	CTGTGTCGCGCTCCATCTAC	60.868	60.000	5.56	0.00	0.00	2.59
944	1096	1.433471	CTGTGTCGCGCTCCATCTA	59.567	57.895	5.56	0.00	0.00	1.98
945	1097	2.182791	CTGTGTCGCGCTCCATCT	59.817	61.111	5.56	0.00	0.00	2.90
946	1098	2.887568	CCTGTGTCGCGCTCCATC	60.888	66.667	5.56	0.00	0.00	3.51
950	1102	4.724602	TCAGCCTGTGTCGCGCTC	62.725	66.667	5.56	0.00	0.00	5.03
1158	1310	2.632136	TTTCGTCGAACAGGTGGCGT	62.632	55.000	7.29	0.00	0.00	5.68
1163	1315	0.953960	GGGCATTTCGTCGAACAGGT	60.954	55.000	7.29	0.00	0.00	4.00
1255	1407	2.957491	AGCATGTCGGAGAAGAGAAG	57.043	50.000	0.00	0.00	39.69	2.85
1595	1747	1.831580	AACCTTCAAGAGCAGCATCC	58.168	50.000	0.00	0.00	0.00	3.51
1638	1790	5.840243	CATCAAATACCTTGAGGATGCAA	57.160	39.130	3.59	0.00	46.54	4.08
1647	1799	2.355756	CTCGGGTGCATCAAATACCTTG	59.644	50.000	0.00	0.00	34.87	3.61
1665	1817	2.046892	CCACCAGGGAGCAACTCG	60.047	66.667	0.00	0.00	40.01	4.18
1770	1922	1.065199	GCCATCTCATTCACTCCACCA	60.065	52.381	0.00	0.00	0.00	4.17
1854	2006	1.105457	CCATGTTGCATCCATTCCGT	58.895	50.000	0.00	0.00	0.00	4.69
1965	2117	1.452833	GGCCATTCTCAGCTGTCCC	60.453	63.158	14.67	1.35	0.00	4.46
1978	2130	1.542375	AGTGGACCTCCTTGGCCAT	60.542	57.895	6.09	0.00	41.58	4.40
2049	2201	5.066893	CCCACATCTTCCATAAACAGTGATG	59.933	44.000	0.00	0.00	36.76	3.07
2064	2216	2.848694	ACTCATGACATCCCCACATCTT	59.151	45.455	0.00	0.00	0.00	2.40
2081	2233	7.436933	ACGATCAAATATAATCTCTGCACTCA	58.563	34.615	0.00	0.00	0.00	3.41
2082	2234	7.881643	ACGATCAAATATAATCTCTGCACTC	57.118	36.000	0.00	0.00	0.00	3.51
2101	2253	8.742554	ATAATGTCTTTGTTTTCCAAACGATC	57.257	30.769	0.00	0.00	38.12	3.69
2155	2307	4.401022	TCCAGAGCAAGATCATTTTGTGT	58.599	39.130	0.00	0.00	0.00	3.72
2157	2309	4.699257	GTCTCCAGAGCAAGATCATTTTGT	59.301	41.667	0.00	0.00	0.00	2.83
2298	2450	0.179134	CTAACTTCACCGCCCTCGAG	60.179	60.000	5.13	5.13	38.10	4.04
2306	2458	5.504665	GCATCATCAATTCCTAACTTCACCG	60.505	44.000	0.00	0.00	0.00	4.94
2415	2567	4.215908	TCCACGAGATAATGCCTCTACTT	58.784	43.478	0.00	0.00	0.00	2.24
2499	2651	3.413846	ACTGCTTCTTCTTGCATCAGA	57.586	42.857	0.00	0.00	38.59	3.27
2522	2674	5.586243	CCGACAAAAGTGTAATCATCTGGAT	59.414	40.000	0.00	0.00	38.41	3.41
2700	2852	5.887598	ACAAGGCATAGCATCAATAAACTCA	59.112	36.000	0.00	0.00	0.00	3.41
2988	3140	7.902032	ACGTTATTCCAACTTGTAATACATCG	58.098	34.615	0.00	0.00	0.00	3.84
2997	3149	6.713450	ACCAATCTTACGTTATTCCAACTTGT	59.287	34.615	0.00	0.00	0.00	3.16
3098	3250	1.071605	GTCAGTCAATCTCACACGGC	58.928	55.000	0.00	0.00	0.00	5.68
3124	3276	1.374125	CCAGACATGACAACCGCGA	60.374	57.895	8.23	0.00	0.00	5.87
3171	3323	4.527038	TCCTTCGTACCAAGTCATCTTTCT	59.473	41.667	0.00	0.00	0.00	2.52
3225	3378	6.480763	TCTCACCTTAAGATATTGCAACCAA	58.519	36.000	0.00	0.00	35.01	3.67
3266	3429	5.835113	ACTCTGTTTGCAGTTTACAACAT	57.165	34.783	0.15	0.00	43.05	2.71
3407	3572	4.263905	ACCTTCCATTAGAGGTTGAATGCA	60.264	41.667	0.00	0.00	32.69	3.96
3419	3584	7.467811	GCAATGTTCATACTGACCTTCCATTAG	60.468	40.741	0.00	0.00	0.00	1.73
3420	3585	6.318648	GCAATGTTCATACTGACCTTCCATTA	59.681	38.462	0.00	0.00	0.00	1.90
3668	3833	2.715046	TGCATCCCTAAGCTCAACAAG	58.285	47.619	0.00	0.00	0.00	3.16
3734	3899	2.893489	CAAATAGGGGCCAGCCTTATTC	59.107	50.000	4.39	0.00	36.10	1.75
3735	3900	2.962859	CAAATAGGGGCCAGCCTTATT	58.037	47.619	4.39	10.20	36.10	1.40
3736	3901	1.481242	GCAAATAGGGGCCAGCCTTAT	60.481	52.381	4.39	4.71	36.10	1.73
3737	3902	0.106217	GCAAATAGGGGCCAGCCTTA	60.106	55.000	4.39	2.43	36.10	2.69
3741	3912	0.106719	TACAGCAAATAGGGGCCAGC	60.107	55.000	4.39	0.00	0.00	4.85
3767	3938	7.703058	AAACTAAGCTGCCAGTATAAAATGT	57.297	32.000	5.09	0.00	0.00	2.71
3781	3952	2.789409	AGGCCCACTAAACTAAGCTG	57.211	50.000	0.00	0.00	0.00	4.24
3865	4036	8.719648	CAAGGATCAATATGACTAGCAGAATTC	58.280	37.037	0.00	0.00	0.00	2.17
3961	4132	4.097892	CCACCCATCTTGTATTTTGGCTAC	59.902	45.833	0.00	0.00	0.00	3.58

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.