Multiple sequence alignment - TraesCS7A01G230400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G230400 chr7A 100.000 2213 0 0 1 2213 200654937 200657149 0.000000e+00 4087
1 TraesCS7A01G230400 chr6B 91.193 1283 92 12 4 1272 433048258 433046983 0.000000e+00 1724
2 TraesCS7A01G230400 chr4B 91.135 1286 91 12 4 1272 301727346 301726067 0.000000e+00 1722
3 TraesCS7A01G230400 chr4B 91.044 1284 93 13 4 1272 301700796 301699520 0.000000e+00 1714
4 TraesCS7A01G230400 chr4B 90.909 1287 92 13 4 1272 301837487 301836208 0.000000e+00 1705
5 TraesCS7A01G230400 chr4B 90.895 1285 94 13 4 1272 301781670 301780393 0.000000e+00 1703
6 TraesCS7A01G230400 chr4B 90.888 1284 95 13 4 1272 301811153 301809877 0.000000e+00 1703
7 TraesCS7A01G230400 chr4B 91.617 1014 71 8 267 1272 301754343 301753336 0.000000e+00 1389
8 TraesCS7A01G230400 chr4B 93.646 362 23 0 1268 1629 301753295 301752934 1.930000e-150 542
9 TraesCS7A01G230400 chr4B 93.370 362 24 0 1268 1629 301809836 301809475 8.990000e-149 536
10 TraesCS7A01G230400 chr4B 93.370 362 23 1 1268 1629 301836167 301835807 3.230000e-148 534
11 TraesCS7A01G230400 chr4B 93.094 362 25 0 1268 1629 301780352 301779991 4.180000e-147 531
12 TraesCS7A01G230400 chr4B 92.818 362 26 0 1268 1629 301699479 301699118 1.950000e-145 525
13 TraesCS7A01G230400 chr4B 92.818 362 26 0 1268 1629 301726026 301725665 1.950000e-145 525
14 TraesCS7A01G230400 chr4B 92.541 362 27 0 1268 1629 301861317 301860956 9.060000e-144 520
15 TraesCS7A01G230400 chr6D 93.231 1167 60 5 464 1629 28030247 28029099 0.000000e+00 1700
16 TraesCS7A01G230400 chr6D 93.842 341 19 2 4 342 28030599 28030259 1.520000e-141 512
17 TraesCS7A01G230400 chr4D 89.535 860 80 4 421 1272 443715360 443714503 0.000000e+00 1081
18 TraesCS7A01G230400 chr4D 91.944 360 29 0 1270 1629 416823727 416823368 2.540000e-139 505
19 TraesCS7A01G230400 chr7B 88.906 649 54 9 1 640 482952163 482952802 0.000000e+00 784
20 TraesCS7A01G230400 chrUn 88.942 624 50 10 1 611 308060872 308061489 0.000000e+00 752


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G230400 chr7A 200654937 200657149 2212 False 4087.0 4087 100.0000 1 2213 1 chr7A.!!$F1 2212
1 TraesCS7A01G230400 chr6B 433046983 433048258 1275 True 1724.0 1724 91.1930 4 1272 1 chr6B.!!$R1 1268
2 TraesCS7A01G230400 chr4B 301725665 301727346 1681 True 1123.5 1722 91.9765 4 1629 2 chr4B.!!$R3 1625
3 TraesCS7A01G230400 chr4B 301699118 301700796 1678 True 1119.5 1714 91.9310 4 1629 2 chr4B.!!$R2 1625
4 TraesCS7A01G230400 chr4B 301809475 301811153 1678 True 1119.5 1703 92.1290 4 1629 2 chr4B.!!$R6 1625
5 TraesCS7A01G230400 chr4B 301835807 301837487 1680 True 1119.5 1705 92.1395 4 1629 2 chr4B.!!$R7 1625
6 TraesCS7A01G230400 chr4B 301779991 301781670 1679 True 1117.0 1703 91.9945 4 1629 2 chr4B.!!$R5 1625
7 TraesCS7A01G230400 chr4B 301752934 301754343 1409 True 965.5 1389 92.6315 267 1629 2 chr4B.!!$R4 1362
8 TraesCS7A01G230400 chr6D 28029099 28030599 1500 True 1106.0 1700 93.5365 4 1629 2 chr6D.!!$R1 1625
9 TraesCS7A01G230400 chr4D 443714503 443715360 857 True 1081.0 1081 89.5350 421 1272 1 chr4D.!!$R2 851
10 TraesCS7A01G230400 chr7B 482952163 482952802 639 False 784.0 784 88.9060 1 640 1 chr7B.!!$F1 639
11 TraesCS7A01G230400 chrUn 308060872 308061489 617 False 752.0 752 88.9420 1 611 1 chrUn.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 210 0.253044 CCTCACCACCGATGACCAAT 59.747 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1719 0.179468 GGGCAAGTATCACCCGCTAA 59.821 55.0 0.0 0.0 32.92 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 139 4.213270 TCAAGTGTCCAAATAAAGTGCGAG 59.787 41.667 0.00 0.00 0.00 5.03
140 144 3.088532 TCCAAATAAAGTGCGAGCCAAT 58.911 40.909 0.00 0.00 0.00 3.16
169 181 2.294195 TGGATGGTTAGAGGGGGATTCA 60.294 50.000 0.00 0.00 0.00 2.57
197 210 0.253044 CCTCACCACCGATGACCAAT 59.747 55.000 0.00 0.00 0.00 3.16
260 274 2.172483 ATTGGCTCTCTTGGCGACGT 62.172 55.000 0.00 0.00 35.06 4.34
273 287 0.524862 GCGACGTCTAGGGTTTCTGA 59.475 55.000 14.70 0.00 0.00 3.27
312 326 2.168496 AGCTAGGCTTAGTTCACACGA 58.832 47.619 4.63 0.00 33.89 4.35
401 415 0.312729 TGCGAGTACATGTGTGACGT 59.687 50.000 9.11 0.00 0.00 4.34
572 592 5.859205 AGCTCAATCCAAAAGTTCAAAGT 57.141 34.783 0.00 0.00 0.00 2.66
675 695 9.155975 CTCACAACAACTGCTAAAAGATATAGT 57.844 33.333 0.00 0.00 0.00 2.12
677 697 9.546909 CACAACAACTGCTAAAAGATATAGTTG 57.453 33.333 11.94 11.94 46.21 3.16
698 718 8.149973 AGTTGTATACAATTTAACATAGGCGG 57.850 34.615 20.72 0.00 38.24 6.13
720 740 3.198872 GCCTTGCATCCACTACTTAGAC 58.801 50.000 0.00 0.00 0.00 2.59
742 762 1.535462 AGTTTAGTCGCCACATTGTGC 59.465 47.619 11.41 6.26 31.34 4.57
803 823 7.633361 GTAGATTACGAAAGATTATCCGCAA 57.367 36.000 0.00 0.00 0.00 4.85
894 915 5.260424 TGGTAATCCTTTGCAATTGCTCTA 58.740 37.500 29.37 13.29 36.95 2.43
914 936 8.777413 TGCTCTATCAATTTCATACAATAGCAC 58.223 33.333 0.00 0.00 0.00 4.40
1036 1058 3.580895 TGGTGAACTGCCAATCACTACTA 59.419 43.478 9.39 0.00 44.20 1.82
1179 1201 4.737352 GCTTTCACCTTCAAATGCACTTCA 60.737 41.667 0.00 0.00 0.00 3.02
1202 1224 4.498520 ACCGCGCCTGATCGTCTG 62.499 66.667 0.00 0.00 0.00 3.51
1244 1266 8.177119 TGCAAAAGCCCCTTATTATATAACTG 57.823 34.615 0.00 0.00 0.00 3.16
1306 1373 2.917933 AGCTATCGGTTATTTGCTGCA 58.082 42.857 0.00 0.00 0.00 4.41
1335 1402 5.911752 TGTTGTGTGGTATGCTTTTGAAAT 58.088 33.333 0.00 0.00 0.00 2.17
1414 1481 7.384477 TCTGCATGATTGTCTATCCAATCTAG 58.616 38.462 13.28 8.02 47.00 2.43
1493 1561 3.665745 AACAAACCATGACAATCCTGC 57.334 42.857 0.00 0.00 0.00 4.85
1495 1563 1.541147 CAAACCATGACAATCCTGCGT 59.459 47.619 0.00 0.00 0.00 5.24
1518 1592 4.583073 TGTATGACTATCGCTTGCTTCCTA 59.417 41.667 0.00 0.00 0.00 2.94
1563 1637 8.276060 TGCTTTTCGAACAACAATATGTTAAC 57.724 30.769 0.00 0.00 43.31 2.01
1564 1638 7.915923 TGCTTTTCGAACAACAATATGTTAACA 59.084 29.630 11.41 11.41 43.31 2.41
1574 1648 8.128582 ACAACAATATGTTAACACACACTCTTG 58.871 33.333 11.22 3.06 38.77 3.02
1577 1651 4.818534 ATGTTAACACACACTCTTGCAG 57.181 40.909 11.22 0.00 35.03 4.41
1629 1703 1.146358 GCGCAACGGGTCATCTAGTC 61.146 60.000 0.30 0.00 0.00 2.59
1630 1704 0.456221 CGCAACGGGTCATCTAGTCT 59.544 55.000 0.00 0.00 0.00 3.24
1631 1705 1.674441 CGCAACGGGTCATCTAGTCTA 59.326 52.381 0.00 0.00 0.00 2.59
1632 1706 2.287069 CGCAACGGGTCATCTAGTCTAG 60.287 54.545 0.00 0.00 0.00 2.43
1633 1707 2.034812 GCAACGGGTCATCTAGTCTAGG 59.965 54.545 7.05 0.00 0.00 3.02
1634 1708 3.288964 CAACGGGTCATCTAGTCTAGGT 58.711 50.000 7.05 0.00 0.00 3.08
1635 1709 4.458397 CAACGGGTCATCTAGTCTAGGTA 58.542 47.826 7.05 0.00 0.00 3.08
1636 1710 4.785346 ACGGGTCATCTAGTCTAGGTAA 57.215 45.455 7.05 0.00 0.00 2.85
1637 1711 5.121380 ACGGGTCATCTAGTCTAGGTAAA 57.879 43.478 7.05 0.00 0.00 2.01
1638 1712 5.513233 ACGGGTCATCTAGTCTAGGTAAAA 58.487 41.667 7.05 0.00 0.00 1.52
1639 1713 5.593502 ACGGGTCATCTAGTCTAGGTAAAAG 59.406 44.000 7.05 0.00 0.00 2.27
1640 1714 5.507650 CGGGTCATCTAGTCTAGGTAAAAGC 60.508 48.000 7.05 0.00 0.00 3.51
1641 1715 5.599242 GGGTCATCTAGTCTAGGTAAAAGCT 59.401 44.000 7.05 0.00 0.00 3.74
1642 1716 6.461788 GGGTCATCTAGTCTAGGTAAAAGCTG 60.462 46.154 7.05 0.00 0.00 4.24
1643 1717 5.980715 GTCATCTAGTCTAGGTAAAAGCTGC 59.019 44.000 7.05 0.00 0.00 5.25
1644 1718 5.656859 TCATCTAGTCTAGGTAAAAGCTGCA 59.343 40.000 7.05 0.00 0.00 4.41
1645 1719 6.325028 TCATCTAGTCTAGGTAAAAGCTGCAT 59.675 38.462 7.05 0.00 0.00 3.96
1646 1720 6.546428 TCTAGTCTAGGTAAAAGCTGCATT 57.454 37.500 7.05 0.00 0.00 3.56
1647 1721 7.655521 TCTAGTCTAGGTAAAAGCTGCATTA 57.344 36.000 7.05 0.00 0.00 1.90
1648 1722 7.717568 TCTAGTCTAGGTAAAAGCTGCATTAG 58.282 38.462 7.05 0.00 0.00 1.73
1659 1733 2.533266 CTGCATTAGCGGGTGATACT 57.467 50.000 0.00 0.00 46.23 2.12
1660 1734 2.838736 CTGCATTAGCGGGTGATACTT 58.161 47.619 0.00 0.00 46.23 2.24
1661 1735 2.545526 CTGCATTAGCGGGTGATACTTG 59.454 50.000 0.00 0.00 46.23 3.16
1662 1736 1.264288 GCATTAGCGGGTGATACTTGC 59.736 52.381 0.00 0.00 0.00 4.01
1663 1737 1.873591 CATTAGCGGGTGATACTTGCC 59.126 52.381 0.00 0.00 0.00 4.52
1664 1738 0.179468 TTAGCGGGTGATACTTGCCC 59.821 55.000 0.00 0.00 39.03 5.36
1665 1739 0.689745 TAGCGGGTGATACTTGCCCT 60.690 55.000 0.00 0.00 40.22 5.19
1666 1740 0.689745 AGCGGGTGATACTTGCCCTA 60.690 55.000 0.00 0.00 40.22 3.53
1667 1741 0.532196 GCGGGTGATACTTGCCCTAC 60.532 60.000 0.00 0.00 40.22 3.18
1668 1742 0.106149 CGGGTGATACTTGCCCTACC 59.894 60.000 0.00 0.00 40.22 3.18
1669 1743 1.209621 GGGTGATACTTGCCCTACCA 58.790 55.000 0.00 0.00 39.31 3.25
1670 1744 1.141053 GGGTGATACTTGCCCTACCAG 59.859 57.143 0.00 0.00 39.31 4.00
1671 1745 1.475213 GGTGATACTTGCCCTACCAGC 60.475 57.143 0.00 0.00 0.00 4.85
1672 1746 1.209504 GTGATACTTGCCCTACCAGCA 59.790 52.381 0.00 0.00 38.81 4.41
1678 1752 1.838112 TTGCCCTACCAGCAAATGAG 58.162 50.000 0.00 0.00 46.71 2.90
1679 1753 0.698238 TGCCCTACCAGCAAATGAGT 59.302 50.000 0.00 0.00 37.28 3.41
1680 1754 1.912731 TGCCCTACCAGCAAATGAGTA 59.087 47.619 0.00 0.00 37.28 2.59
1681 1755 2.307392 TGCCCTACCAGCAAATGAGTAA 59.693 45.455 0.00 0.00 37.28 2.24
1682 1756 2.683362 GCCCTACCAGCAAATGAGTAAC 59.317 50.000 0.00 0.00 0.00 2.50
1683 1757 3.872240 GCCCTACCAGCAAATGAGTAACA 60.872 47.826 0.00 0.00 0.00 2.41
1684 1758 4.331968 CCCTACCAGCAAATGAGTAACAA 58.668 43.478 0.00 0.00 0.00 2.83
1685 1759 4.949856 CCCTACCAGCAAATGAGTAACAAT 59.050 41.667 0.00 0.00 0.00 2.71
1686 1760 5.163622 CCCTACCAGCAAATGAGTAACAATG 60.164 44.000 0.00 0.00 0.00 2.82
1687 1761 4.178545 ACCAGCAAATGAGTAACAATGC 57.821 40.909 0.00 0.00 42.05 3.56
1688 1762 3.056607 ACCAGCAAATGAGTAACAATGCC 60.057 43.478 0.00 0.00 42.42 4.40
1689 1763 3.194116 CCAGCAAATGAGTAACAATGCCT 59.806 43.478 0.00 0.00 42.42 4.75
1690 1764 4.171005 CAGCAAATGAGTAACAATGCCTG 58.829 43.478 0.00 0.00 42.42 4.85
1691 1765 2.925563 GCAAATGAGTAACAATGCCTGC 59.074 45.455 0.00 0.00 38.55 4.85
1692 1766 3.367703 GCAAATGAGTAACAATGCCTGCT 60.368 43.478 0.00 0.00 38.55 4.24
1693 1767 4.813027 CAAATGAGTAACAATGCCTGCTT 58.187 39.130 0.00 0.00 0.00 3.91
1694 1768 4.708726 AATGAGTAACAATGCCTGCTTC 57.291 40.909 0.00 0.00 0.00 3.86
1695 1769 3.138884 TGAGTAACAATGCCTGCTTCA 57.861 42.857 0.00 0.00 0.00 3.02
1696 1770 3.689347 TGAGTAACAATGCCTGCTTCAT 58.311 40.909 0.00 0.00 0.00 2.57
1697 1771 4.842574 TGAGTAACAATGCCTGCTTCATA 58.157 39.130 0.00 0.00 0.00 2.15
1698 1772 5.252547 TGAGTAACAATGCCTGCTTCATAA 58.747 37.500 0.00 0.00 0.00 1.90
1699 1773 5.355071 TGAGTAACAATGCCTGCTTCATAAG 59.645 40.000 0.00 0.00 0.00 1.73
1700 1774 5.500234 AGTAACAATGCCTGCTTCATAAGA 58.500 37.500 0.00 0.00 0.00 2.10
1701 1775 5.945784 AGTAACAATGCCTGCTTCATAAGAA 59.054 36.000 0.00 0.00 0.00 2.52
1702 1776 5.927281 AACAATGCCTGCTTCATAAGAAT 57.073 34.783 0.00 0.00 32.31 2.40
1703 1777 5.927281 ACAATGCCTGCTTCATAAGAATT 57.073 34.783 0.00 0.00 32.31 2.17
1704 1778 6.290294 ACAATGCCTGCTTCATAAGAATTT 57.710 33.333 0.00 0.00 32.31 1.82
1705 1779 7.408756 ACAATGCCTGCTTCATAAGAATTTA 57.591 32.000 0.00 0.00 32.31 1.40
1706 1780 7.839907 ACAATGCCTGCTTCATAAGAATTTAA 58.160 30.769 0.00 0.00 32.31 1.52
1707 1781 8.480501 ACAATGCCTGCTTCATAAGAATTTAAT 58.519 29.630 0.00 0.00 32.31 1.40
1708 1782 8.975439 CAATGCCTGCTTCATAAGAATTTAATC 58.025 33.333 0.00 0.00 32.31 1.75
1709 1783 7.643569 TGCCTGCTTCATAAGAATTTAATCA 57.356 32.000 0.00 0.00 32.31 2.57
1710 1784 7.709947 TGCCTGCTTCATAAGAATTTAATCAG 58.290 34.615 0.00 0.00 32.31 2.90
1711 1785 7.340232 TGCCTGCTTCATAAGAATTTAATCAGT 59.660 33.333 0.00 0.00 32.31 3.41
1712 1786 8.193438 GCCTGCTTCATAAGAATTTAATCAGTT 58.807 33.333 0.00 0.00 32.31 3.16
1739 1813 9.454859 AGTAGTCTTTTCATAGAAAATTGGAGG 57.545 33.333 5.49 0.00 0.00 4.30
1740 1814 9.449719 GTAGTCTTTTCATAGAAAATTGGAGGA 57.550 33.333 5.49 0.00 0.00 3.71
1741 1815 8.940397 AGTCTTTTCATAGAAAATTGGAGGAA 57.060 30.769 5.49 0.00 0.00 3.36
1742 1816 9.367160 AGTCTTTTCATAGAAAATTGGAGGAAA 57.633 29.630 5.49 0.00 0.00 3.13
1743 1817 9.411801 GTCTTTTCATAGAAAATTGGAGGAAAC 57.588 33.333 5.49 0.00 0.00 2.78
1744 1818 8.585018 TCTTTTCATAGAAAATTGGAGGAAACC 58.415 33.333 5.49 0.00 0.00 3.27
1745 1819 7.847711 TTTCATAGAAAATTGGAGGAAACCA 57.152 32.000 0.00 0.00 38.24 3.67
1756 1830 5.538849 TGGAGGAAACCAAACAAATAACC 57.461 39.130 0.00 0.00 36.96 2.85
1757 1831 4.962995 TGGAGGAAACCAAACAAATAACCA 59.037 37.500 0.00 0.00 36.96 3.67
1758 1832 5.069781 TGGAGGAAACCAAACAAATAACCAG 59.930 40.000 0.00 0.00 36.96 4.00
1759 1833 5.303333 GGAGGAAACCAAACAAATAACCAGA 59.697 40.000 0.00 0.00 0.00 3.86
1760 1834 6.183360 GGAGGAAACCAAACAAATAACCAGAA 60.183 38.462 0.00 0.00 0.00 3.02
1761 1835 6.578944 AGGAAACCAAACAAATAACCAGAAC 58.421 36.000 0.00 0.00 0.00 3.01
1762 1836 5.756347 GGAAACCAAACAAATAACCAGAACC 59.244 40.000 0.00 0.00 0.00 3.62
1763 1837 6.407639 GGAAACCAAACAAATAACCAGAACCT 60.408 38.462 0.00 0.00 0.00 3.50
1764 1838 6.553953 AACCAAACAAATAACCAGAACCTT 57.446 33.333 0.00 0.00 0.00 3.50
1765 1839 6.553953 ACCAAACAAATAACCAGAACCTTT 57.446 33.333 0.00 0.00 0.00 3.11
1766 1840 6.953101 ACCAAACAAATAACCAGAACCTTTT 58.047 32.000 0.00 0.00 0.00 2.27
1767 1841 6.821160 ACCAAACAAATAACCAGAACCTTTTG 59.179 34.615 0.00 0.00 0.00 2.44
1768 1842 7.044798 CCAAACAAATAACCAGAACCTTTTGA 58.955 34.615 0.00 0.00 0.00 2.69
1769 1843 7.224557 CCAAACAAATAACCAGAACCTTTTGAG 59.775 37.037 0.00 0.00 0.00 3.02
1770 1844 7.418337 AACAAATAACCAGAACCTTTTGAGT 57.582 32.000 0.00 0.00 0.00 3.41
1771 1845 8.528044 AACAAATAACCAGAACCTTTTGAGTA 57.472 30.769 0.00 0.00 0.00 2.59
1772 1846 8.706322 ACAAATAACCAGAACCTTTTGAGTAT 57.294 30.769 0.00 0.00 0.00 2.12
1773 1847 9.143155 ACAAATAACCAGAACCTTTTGAGTATT 57.857 29.630 0.00 0.00 0.00 1.89
1774 1848 9.981114 CAAATAACCAGAACCTTTTGAGTATTT 57.019 29.630 0.00 0.00 0.00 1.40
1800 1874 8.644374 TTTTAAGCATAAACAATAGAGTGGGT 57.356 30.769 0.00 0.00 30.86 4.51
1801 1875 8.644374 TTTAAGCATAAACAATAGAGTGGGTT 57.356 30.769 0.00 0.00 0.00 4.11
1802 1876 6.759497 AAGCATAAACAATAGAGTGGGTTC 57.241 37.500 0.00 0.00 0.00 3.62
1803 1877 5.193679 AGCATAAACAATAGAGTGGGTTCC 58.806 41.667 0.00 0.00 0.00 3.62
1804 1878 5.044846 AGCATAAACAATAGAGTGGGTTCCT 60.045 40.000 0.00 0.00 0.00 3.36
1805 1879 6.157994 AGCATAAACAATAGAGTGGGTTCCTA 59.842 38.462 0.00 0.00 0.00 2.94
1806 1880 6.260271 GCATAAACAATAGAGTGGGTTCCTAC 59.740 42.308 0.00 0.00 0.00 3.18
1807 1881 7.565680 CATAAACAATAGAGTGGGTTCCTACT 58.434 38.462 7.56 7.56 0.00 2.57
1808 1882 5.422214 AACAATAGAGTGGGTTCCTACTG 57.578 43.478 12.39 1.95 0.00 2.74
1809 1883 4.684724 ACAATAGAGTGGGTTCCTACTGA 58.315 43.478 12.39 1.46 0.00 3.41
1810 1884 5.091552 ACAATAGAGTGGGTTCCTACTGAA 58.908 41.667 12.39 1.36 0.00 3.02
1824 1898 6.911250 TCCTACTGAACTATTGAGTGTTCA 57.089 37.500 8.04 8.04 46.73 3.18
1833 1907 9.288576 TGAACTATTGAGTGTTCAAATTGATCT 57.711 29.630 0.00 0.00 46.17 2.75
1836 1910 9.512588 ACTATTGAGTGTTCAAATTGATCTTCT 57.487 29.630 0.00 0.03 45.82 2.85
1918 1992 9.844257 AAATATTTTTCATGTGAACTTCCCAAA 57.156 25.926 0.00 0.00 33.13 3.28
1919 1993 8.831715 ATATTTTTCATGTGAACTTCCCAAAC 57.168 30.769 0.00 0.00 33.13 2.93
1920 1994 5.667539 TTTTCATGTGAACTTCCCAAACA 57.332 34.783 0.00 0.00 33.13 2.83
1921 1995 5.867903 TTTCATGTGAACTTCCCAAACAT 57.132 34.783 0.00 0.00 33.13 2.71
1922 1996 5.452078 TTCATGTGAACTTCCCAAACATC 57.548 39.130 0.00 0.00 29.20 3.06
1923 1997 4.468713 TCATGTGAACTTCCCAAACATCA 58.531 39.130 0.00 0.00 29.20 3.07
1924 1998 5.078949 TCATGTGAACTTCCCAAACATCAT 58.921 37.500 0.00 0.00 29.20 2.45
1925 1999 5.183713 TCATGTGAACTTCCCAAACATCATC 59.816 40.000 0.00 0.00 29.20 2.92
1926 2000 4.728772 TGTGAACTTCCCAAACATCATCT 58.271 39.130 0.00 0.00 0.00 2.90
1927 2001 4.761739 TGTGAACTTCCCAAACATCATCTC 59.238 41.667 0.00 0.00 0.00 2.75
1928 2002 4.761739 GTGAACTTCCCAAACATCATCTCA 59.238 41.667 0.00 0.00 0.00 3.27
1929 2003 5.416952 GTGAACTTCCCAAACATCATCTCAT 59.583 40.000 0.00 0.00 0.00 2.90
1930 2004 5.649395 TGAACTTCCCAAACATCATCTCATC 59.351 40.000 0.00 0.00 0.00 2.92
1931 2005 5.183530 ACTTCCCAAACATCATCTCATCA 57.816 39.130 0.00 0.00 0.00 3.07
1932 2006 5.573219 ACTTCCCAAACATCATCTCATCAA 58.427 37.500 0.00 0.00 0.00 2.57
1933 2007 6.192773 ACTTCCCAAACATCATCTCATCAAT 58.807 36.000 0.00 0.00 0.00 2.57
1934 2008 6.666546 ACTTCCCAAACATCATCTCATCAATT 59.333 34.615 0.00 0.00 0.00 2.32
1935 2009 6.704289 TCCCAAACATCATCTCATCAATTC 57.296 37.500 0.00 0.00 0.00 2.17
1936 2010 6.189133 TCCCAAACATCATCTCATCAATTCA 58.811 36.000 0.00 0.00 0.00 2.57
1937 2011 6.837048 TCCCAAACATCATCTCATCAATTCAT 59.163 34.615 0.00 0.00 0.00 2.57
1938 2012 6.923508 CCCAAACATCATCTCATCAATTCATG 59.076 38.462 0.00 0.00 0.00 3.07
1939 2013 7.417456 CCCAAACATCATCTCATCAATTCATGT 60.417 37.037 0.00 0.00 0.00 3.21
1940 2014 7.648112 CCAAACATCATCTCATCAATTCATGTC 59.352 37.037 0.00 0.00 0.00 3.06
1941 2015 6.541111 ACATCATCTCATCAATTCATGTCG 57.459 37.500 0.00 0.00 0.00 4.35
1942 2016 6.053650 ACATCATCTCATCAATTCATGTCGT 58.946 36.000 0.00 0.00 0.00 4.34
1943 2017 5.978934 TCATCTCATCAATTCATGTCGTG 57.021 39.130 0.00 0.00 0.00 4.35
1944 2018 5.422145 TCATCTCATCAATTCATGTCGTGT 58.578 37.500 0.00 0.00 0.00 4.49
1945 2019 5.876460 TCATCTCATCAATTCATGTCGTGTT 59.124 36.000 0.00 0.00 0.00 3.32
1946 2020 5.535043 TCTCATCAATTCATGTCGTGTTG 57.465 39.130 0.00 0.00 0.00 3.33
1947 2021 4.996758 TCTCATCAATTCATGTCGTGTTGT 59.003 37.500 0.00 0.00 0.00 3.32
1948 2022 5.469760 TCTCATCAATTCATGTCGTGTTGTT 59.530 36.000 0.00 0.00 0.00 2.83
1949 2023 6.017192 TCTCATCAATTCATGTCGTGTTGTTT 60.017 34.615 0.00 0.00 0.00 2.83
1950 2024 6.142139 TCATCAATTCATGTCGTGTTGTTTC 58.858 36.000 0.00 0.00 0.00 2.78
1951 2025 4.854399 TCAATTCATGTCGTGTTGTTTCC 58.146 39.130 0.00 0.00 0.00 3.13
1952 2026 3.915437 ATTCATGTCGTGTTGTTTCCC 57.085 42.857 0.00 0.00 0.00 3.97
1953 2027 2.333688 TCATGTCGTGTTGTTTCCCA 57.666 45.000 0.00 0.00 0.00 4.37
1954 2028 2.644676 TCATGTCGTGTTGTTTCCCAA 58.355 42.857 0.00 0.00 0.00 4.12
1955 2029 3.017442 TCATGTCGTGTTGTTTCCCAAA 58.983 40.909 0.00 0.00 34.07 3.28
1956 2030 3.634448 TCATGTCGTGTTGTTTCCCAAAT 59.366 39.130 0.00 0.00 34.07 2.32
1957 2031 4.822350 TCATGTCGTGTTGTTTCCCAAATA 59.178 37.500 0.00 0.00 34.07 1.40
1958 2032 5.475220 TCATGTCGTGTTGTTTCCCAAATAT 59.525 36.000 0.00 0.00 34.07 1.28
1959 2033 5.114785 TGTCGTGTTGTTTCCCAAATATG 57.885 39.130 0.00 0.00 34.07 1.78
1960 2034 3.917985 GTCGTGTTGTTTCCCAAATATGC 59.082 43.478 0.00 0.00 34.07 3.14
1961 2035 3.570125 TCGTGTTGTTTCCCAAATATGCA 59.430 39.130 0.00 0.00 34.07 3.96
1962 2036 4.219507 TCGTGTTGTTTCCCAAATATGCAT 59.780 37.500 3.79 3.79 34.07 3.96
1963 2037 4.928615 CGTGTTGTTTCCCAAATATGCATT 59.071 37.500 3.54 0.00 34.07 3.56
1964 2038 6.071896 TCGTGTTGTTTCCCAAATATGCATTA 60.072 34.615 3.54 0.00 34.07 1.90
1965 2039 6.587990 CGTGTTGTTTCCCAAATATGCATTAA 59.412 34.615 3.54 0.00 34.07 1.40
1966 2040 7.201427 CGTGTTGTTTCCCAAATATGCATTAAG 60.201 37.037 3.54 0.00 34.07 1.85
1967 2041 6.593382 TGTTGTTTCCCAAATATGCATTAAGC 59.407 34.615 3.54 0.00 38.18 3.09
1968 2042 5.669477 TGTTTCCCAAATATGCATTAAGCC 58.331 37.500 3.54 0.00 44.83 4.35
1969 2043 5.188555 TGTTTCCCAAATATGCATTAAGCCA 59.811 36.000 3.54 0.00 44.83 4.75
1970 2044 6.126825 TGTTTCCCAAATATGCATTAAGCCAT 60.127 34.615 3.54 0.00 44.83 4.40
1971 2045 5.471556 TCCCAAATATGCATTAAGCCATG 57.528 39.130 3.54 0.00 44.83 3.66
1972 2046 5.146298 TCCCAAATATGCATTAAGCCATGA 58.854 37.500 3.54 0.00 44.83 3.07
1973 2047 5.781306 TCCCAAATATGCATTAAGCCATGAT 59.219 36.000 3.54 0.00 44.83 2.45
1974 2048 5.872617 CCCAAATATGCATTAAGCCATGATG 59.127 40.000 3.54 0.00 44.83 3.07
1975 2049 6.460781 CCAAATATGCATTAAGCCATGATGT 58.539 36.000 3.54 0.00 44.83 3.06
1976 2050 6.932400 CCAAATATGCATTAAGCCATGATGTT 59.068 34.615 3.54 0.00 44.83 2.71
1977 2051 7.095397 CCAAATATGCATTAAGCCATGATGTTG 60.095 37.037 3.54 0.00 44.83 3.33
1978 2052 6.659745 ATATGCATTAAGCCATGATGTTGT 57.340 33.333 3.54 0.00 44.83 3.32
1979 2053 7.764141 ATATGCATTAAGCCATGATGTTGTA 57.236 32.000 3.54 0.00 44.83 2.41
1980 2054 5.911378 TGCATTAAGCCATGATGTTGTAA 57.089 34.783 0.00 0.00 44.83 2.41
1981 2055 6.468333 TGCATTAAGCCATGATGTTGTAAT 57.532 33.333 0.00 0.00 44.83 1.89
1982 2056 6.876155 TGCATTAAGCCATGATGTTGTAATT 58.124 32.000 0.00 0.00 44.83 1.40
1983 2057 8.005192 TGCATTAAGCCATGATGTTGTAATTA 57.995 30.769 0.00 0.00 44.83 1.40
1984 2058 8.640651 TGCATTAAGCCATGATGTTGTAATTAT 58.359 29.630 0.00 0.00 44.83 1.28
1985 2059 8.918658 GCATTAAGCCATGATGTTGTAATTATG 58.081 33.333 0.00 0.00 37.23 1.90
1986 2060 9.970395 CATTAAGCCATGATGTTGTAATTATGT 57.030 29.630 0.00 0.00 0.00 2.29
1990 2064 9.723601 AAGCCATGATGTTGTAATTATGTTTTT 57.276 25.926 0.00 0.00 0.00 1.94
2013 2087 9.832445 TTTTTACACCATGCAATTAGGTTAAAA 57.168 25.926 0.00 8.22 32.15 1.52
2037 2111 9.973450 AAATAAAATGTAGTGTGCAAACATACA 57.027 25.926 10.29 14.32 40.16 2.29
2041 2115 9.571810 AAAATGTAGTGTGCAAACATACATATG 57.428 29.630 22.00 0.00 40.16 1.78
2043 2117 7.071014 TGTAGTGTGCAAACATACATATGTG 57.929 36.000 18.81 5.20 45.55 3.21
2044 2118 6.652900 TGTAGTGTGCAAACATACATATGTGT 59.347 34.615 18.81 9.13 45.55 3.72
2045 2119 7.819900 TGTAGTGTGCAAACATACATATGTGTA 59.180 33.333 18.81 4.66 45.55 2.90
2074 2148 7.948278 ATGTATGAAGAAAAGATACCTACGC 57.052 36.000 0.00 0.00 0.00 4.42
2075 2149 6.278363 TGTATGAAGAAAAGATACCTACGCC 58.722 40.000 0.00 0.00 0.00 5.68
2076 2150 5.615925 ATGAAGAAAAGATACCTACGCCT 57.384 39.130 0.00 0.00 0.00 5.52
2077 2151 5.416271 TGAAGAAAAGATACCTACGCCTT 57.584 39.130 0.00 0.00 0.00 4.35
2078 2152 5.801380 TGAAGAAAAGATACCTACGCCTTT 58.199 37.500 0.00 0.00 0.00 3.11
2079 2153 5.642063 TGAAGAAAAGATACCTACGCCTTTG 59.358 40.000 0.00 0.00 0.00 2.77
2080 2154 5.416271 AGAAAAGATACCTACGCCTTTGA 57.584 39.130 0.00 0.00 0.00 2.69
2081 2155 5.801380 AGAAAAGATACCTACGCCTTTGAA 58.199 37.500 0.00 0.00 0.00 2.69
2082 2156 6.415573 AGAAAAGATACCTACGCCTTTGAAT 58.584 36.000 0.00 0.00 0.00 2.57
2083 2157 7.562135 AGAAAAGATACCTACGCCTTTGAATA 58.438 34.615 0.00 0.00 0.00 1.75
2084 2158 8.211629 AGAAAAGATACCTACGCCTTTGAATAT 58.788 33.333 0.00 0.00 0.00 1.28
2085 2159 9.485206 GAAAAGATACCTACGCCTTTGAATATA 57.515 33.333 0.00 0.00 0.00 0.86
2109 2183 5.862678 TTTTTCCTCCAAAACGGAAGAAT 57.137 34.783 0.00 0.00 45.75 2.40
2110 2184 5.447624 TTTTCCTCCAAAACGGAAGAATC 57.552 39.130 0.00 0.00 45.75 2.52
2111 2185 3.780804 TCCTCCAAAACGGAAGAATCA 57.219 42.857 0.00 0.00 45.75 2.57
2112 2186 4.301072 TCCTCCAAAACGGAAGAATCAT 57.699 40.909 0.00 0.00 45.75 2.45
2113 2187 5.429681 TCCTCCAAAACGGAAGAATCATA 57.570 39.130 0.00 0.00 45.75 2.15
2114 2188 5.183228 TCCTCCAAAACGGAAGAATCATAC 58.817 41.667 0.00 0.00 45.75 2.39
2115 2189 4.941263 CCTCCAAAACGGAAGAATCATACA 59.059 41.667 0.00 0.00 45.75 2.29
2116 2190 5.414454 CCTCCAAAACGGAAGAATCATACAA 59.586 40.000 0.00 0.00 45.75 2.41
2117 2191 6.072175 CCTCCAAAACGGAAGAATCATACAAA 60.072 38.462 0.00 0.00 45.75 2.83
2118 2192 6.674066 TCCAAAACGGAAGAATCATACAAAC 58.326 36.000 0.00 0.00 42.52 2.93
2119 2193 6.263392 TCCAAAACGGAAGAATCATACAAACA 59.737 34.615 0.00 0.00 42.52 2.83
2120 2194 7.040062 TCCAAAACGGAAGAATCATACAAACAT 60.040 33.333 0.00 0.00 42.52 2.71
2121 2195 8.240682 CCAAAACGGAAGAATCATACAAACATA 58.759 33.333 0.00 0.00 36.56 2.29
2122 2196 9.787532 CAAAACGGAAGAATCATACAAACATAT 57.212 29.630 0.00 0.00 0.00 1.78
2125 2199 9.832445 AACGGAAGAATCATACAAACATATACT 57.168 29.630 0.00 0.00 0.00 2.12
2154 2228 9.626045 CTCCACATAAAAGAAGAAAAATACACC 57.374 33.333 0.00 0.00 0.00 4.16
2155 2229 9.362151 TCCACATAAAAGAAGAAAAATACACCT 57.638 29.630 0.00 0.00 0.00 4.00
2156 2230 9.626045 CCACATAAAAGAAGAAAAATACACCTC 57.374 33.333 0.00 0.00 0.00 3.85
2157 2231 9.626045 CACATAAAAGAAGAAAAATACACCTCC 57.374 33.333 0.00 0.00 0.00 4.30
2158 2232 8.512138 ACATAAAAGAAGAAAAATACACCTCCG 58.488 33.333 0.00 0.00 0.00 4.63
2159 2233 8.726988 CATAAAAGAAGAAAAATACACCTCCGA 58.273 33.333 0.00 0.00 0.00 4.55
2160 2234 6.803154 AAAGAAGAAAAATACACCTCCGAG 57.197 37.500 0.00 0.00 0.00 4.63
2161 2235 5.485209 AGAAGAAAAATACACCTCCGAGT 57.515 39.130 0.00 0.00 0.00 4.18
2162 2236 6.600882 AGAAGAAAAATACACCTCCGAGTA 57.399 37.500 0.00 0.00 0.00 2.59
2163 2237 7.184067 AGAAGAAAAATACACCTCCGAGTAT 57.816 36.000 0.00 0.00 32.58 2.12
2164 2238 7.621796 AGAAGAAAAATACACCTCCGAGTATT 58.378 34.615 0.00 0.00 41.35 1.89
2165 2239 7.549488 AGAAGAAAAATACACCTCCGAGTATTG 59.451 37.037 0.00 0.00 39.95 1.90
2166 2240 6.708285 AGAAAAATACACCTCCGAGTATTGT 58.292 36.000 0.00 0.00 39.95 2.71
2167 2241 7.844009 AGAAAAATACACCTCCGAGTATTGTA 58.156 34.615 0.00 0.21 39.95 2.41
2168 2242 8.483758 AGAAAAATACACCTCCGAGTATTGTAT 58.516 33.333 8.01 8.01 39.95 2.29
2169 2243 8.658499 AAAAATACACCTCCGAGTATTGTATC 57.342 34.615 11.94 0.00 39.95 2.24
2170 2244 5.979288 ATACACCTCCGAGTATTGTATCC 57.021 43.478 8.01 0.00 29.26 2.59
2171 2245 3.912248 ACACCTCCGAGTATTGTATCCT 58.088 45.455 0.00 0.00 0.00 3.24
2172 2246 4.287552 ACACCTCCGAGTATTGTATCCTT 58.712 43.478 0.00 0.00 0.00 3.36
2173 2247 4.715297 ACACCTCCGAGTATTGTATCCTTT 59.285 41.667 0.00 0.00 0.00 3.11
2174 2248 5.189145 ACACCTCCGAGTATTGTATCCTTTT 59.811 40.000 0.00 0.00 0.00 2.27
2175 2249 6.113411 CACCTCCGAGTATTGTATCCTTTTT 58.887 40.000 0.00 0.00 0.00 1.94
2176 2250 6.037172 CACCTCCGAGTATTGTATCCTTTTTG 59.963 42.308 0.00 0.00 0.00 2.44
2177 2251 5.527582 CCTCCGAGTATTGTATCCTTTTTGG 59.472 44.000 0.00 0.00 37.10 3.28
2178 2252 6.057321 TCCGAGTATTGTATCCTTTTTGGT 57.943 37.500 0.00 0.00 37.07 3.67
2179 2253 6.478129 TCCGAGTATTGTATCCTTTTTGGTT 58.522 36.000 0.00 0.00 37.07 3.67
2180 2254 6.373216 TCCGAGTATTGTATCCTTTTTGGTTG 59.627 38.462 0.00 0.00 37.07 3.77
2181 2255 6.150474 CCGAGTATTGTATCCTTTTTGGTTGT 59.850 38.462 0.00 0.00 37.07 3.32
2182 2256 7.021196 CGAGTATTGTATCCTTTTTGGTTGTG 58.979 38.462 0.00 0.00 37.07 3.33
2183 2257 7.308348 CGAGTATTGTATCCTTTTTGGTTGTGT 60.308 37.037 0.00 0.00 37.07 3.72
2184 2258 8.927675 AGTATTGTATCCTTTTTGGTTGTGTA 57.072 30.769 0.00 0.00 37.07 2.90
2185 2259 9.010029 AGTATTGTATCCTTTTTGGTTGTGTAG 57.990 33.333 0.00 0.00 37.07 2.74
2186 2260 9.005777 GTATTGTATCCTTTTTGGTTGTGTAGA 57.994 33.333 0.00 0.00 37.07 2.59
2187 2261 7.883391 TTGTATCCTTTTTGGTTGTGTAGAA 57.117 32.000 0.00 0.00 37.07 2.10
2188 2262 8.472007 TTGTATCCTTTTTGGTTGTGTAGAAT 57.528 30.769 0.00 0.00 37.07 2.40
2189 2263 9.575868 TTGTATCCTTTTTGGTTGTGTAGAATA 57.424 29.630 0.00 0.00 37.07 1.75
2190 2264 9.575868 TGTATCCTTTTTGGTTGTGTAGAATAA 57.424 29.630 0.00 0.00 37.07 1.40
2191 2265 9.836076 GTATCCTTTTTGGTTGTGTAGAATAAC 57.164 33.333 0.00 0.00 37.07 1.89
2192 2266 7.883391 TCCTTTTTGGTTGTGTAGAATAACA 57.117 32.000 0.00 0.00 37.07 2.41
2193 2267 8.294954 TCCTTTTTGGTTGTGTAGAATAACAA 57.705 30.769 0.00 0.00 37.07 2.83
2194 2268 8.919145 TCCTTTTTGGTTGTGTAGAATAACAAT 58.081 29.630 0.00 0.00 38.47 2.71
2195 2269 8.977505 CCTTTTTGGTTGTGTAGAATAACAATG 58.022 33.333 0.00 0.00 38.47 2.82
2196 2270 9.528018 CTTTTTGGTTGTGTAGAATAACAATGT 57.472 29.630 0.00 0.00 38.47 2.71
2197 2271 9.522804 TTTTTGGTTGTGTAGAATAACAATGTC 57.477 29.630 0.00 0.00 38.47 3.06
2198 2272 8.458573 TTTGGTTGTGTAGAATAACAATGTCT 57.541 30.769 0.00 0.00 38.47 3.41
2199 2273 9.562408 TTTGGTTGTGTAGAATAACAATGTCTA 57.438 29.630 0.00 0.00 38.47 2.59
2200 2274 8.771920 TGGTTGTGTAGAATAACAATGTCTAG 57.228 34.615 0.00 0.00 38.47 2.43
2201 2275 8.590204 TGGTTGTGTAGAATAACAATGTCTAGA 58.410 33.333 0.00 0.00 38.47 2.43
2202 2276 9.431887 GGTTGTGTAGAATAACAATGTCTAGAA 57.568 33.333 0.00 0.00 38.47 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 144 2.571653 CCTCTAACCATCCAACCACAGA 59.428 50.000 0.00 0.00 0.00 3.41
190 203 2.238395 TCCATCGGTGATCAATTGGTCA 59.762 45.455 17.53 17.53 0.00 4.02
197 210 1.344953 CCCCCTCCATCGGTGATCAA 61.345 60.000 0.00 0.00 0.00 2.57
260 274 3.347216 GCAAGCAATCAGAAACCCTAGA 58.653 45.455 0.00 0.00 0.00 2.43
273 287 2.444421 CTTTCCTCTGAGGCAAGCAAT 58.556 47.619 20.43 0.00 32.18 3.56
310 324 7.375230 TGAAAAGATTGACATTTTTCGTTCG 57.625 32.000 12.07 0.00 41.42 3.95
381 395 0.984829 CGTCACACATGTACTCGCAG 59.015 55.000 0.00 0.00 0.00 5.18
401 415 3.388024 CAGAAGACCTATTGAATCGGGGA 59.612 47.826 0.61 0.00 0.00 4.81
572 592 7.642186 TCCTGGATTTAGATGGATTTTCTTGA 58.358 34.615 0.00 0.00 0.00 3.02
591 611 4.080356 CCATGGAGAATGTACTTTCCTGGA 60.080 45.833 5.56 0.00 33.52 3.86
675 695 6.016943 GCCCGCCTATGTTAAATTGTATACAA 60.017 38.462 20.14 20.14 40.51 2.41
677 697 5.106436 GGCCCGCCTATGTTAAATTGTATAC 60.106 44.000 0.00 0.00 0.00 1.47
696 716 1.819632 GTAGTGGATGCAAGGCCCG 60.820 63.158 0.00 0.00 0.00 6.13
698 718 2.170607 TCTAAGTAGTGGATGCAAGGCC 59.829 50.000 0.00 0.00 0.00 5.19
720 740 2.066262 ACAATGTGGCGACTAAACTCG 58.934 47.619 0.00 0.00 36.70 4.18
742 762 0.889186 AGCTTAACTGTGTTGCCCCG 60.889 55.000 0.00 0.00 0.00 5.73
784 804 4.330620 GGTGTTGCGGATAATCTTTCGTAA 59.669 41.667 0.00 0.00 0.00 3.18
786 806 2.676342 GGTGTTGCGGATAATCTTTCGT 59.324 45.455 0.00 0.00 0.00 3.85
795 815 1.374885 CGTGGTGGTGTTGCGGATA 60.375 57.895 0.00 0.00 0.00 2.59
803 823 1.600636 CAATCAGGCGTGGTGGTGT 60.601 57.895 6.56 0.00 0.00 4.16
841 861 2.046313 CGTCTGTTGCAAATGTTCTGC 58.954 47.619 0.00 0.00 40.35 4.26
894 915 6.942532 ACCGTGCTATTGTATGAAATTGAT 57.057 33.333 0.00 0.00 0.00 2.57
1179 1201 3.682292 GATCAGGCGCGGTCCCTTT 62.682 63.158 8.83 0.00 0.00 3.11
1202 1224 6.454715 GCTTTTGCAGTTTGCTTATATTGAGC 60.455 38.462 2.48 4.33 45.31 4.26
1306 1373 4.826274 AGCATACCACACAACAGTCTAT 57.174 40.909 0.00 0.00 0.00 1.98
1426 1493 6.538742 GCACTAAGTCATGTAGCAAAGGATTA 59.461 38.462 0.00 0.00 0.00 1.75
1471 1539 4.320861 CGCAGGATTGTCATGGTTTGTTTA 60.321 41.667 0.00 0.00 0.00 2.01
1493 1561 2.732366 AGCAAGCGATAGTCATACACG 58.268 47.619 0.00 0.00 39.35 4.49
1495 1563 3.384789 AGGAAGCAAGCGATAGTCATACA 59.615 43.478 0.00 0.00 39.35 2.29
1563 1637 2.545526 CCAAGTACTGCAAGAGTGTGTG 59.454 50.000 0.00 0.00 37.43 3.82
1564 1638 2.838736 CCAAGTACTGCAAGAGTGTGT 58.161 47.619 0.00 0.00 37.43 3.72
1574 1648 1.993370 CGAGTGTAAGCCAAGTACTGC 59.007 52.381 0.00 0.00 0.00 4.40
1577 1651 1.356938 GCCGAGTGTAAGCCAAGTAC 58.643 55.000 0.00 0.00 0.00 2.73
1640 1714 2.533266 AGTATCACCCGCTAATGCAG 57.467 50.000 0.00 0.00 39.64 4.41
1641 1715 2.560504 CAAGTATCACCCGCTAATGCA 58.439 47.619 0.00 0.00 39.64 3.96
1642 1716 1.264288 GCAAGTATCACCCGCTAATGC 59.736 52.381 0.00 0.00 0.00 3.56
1643 1717 1.873591 GGCAAGTATCACCCGCTAATG 59.126 52.381 0.00 0.00 0.00 1.90
1644 1718 1.202770 GGGCAAGTATCACCCGCTAAT 60.203 52.381 0.00 0.00 32.92 1.73
1645 1719 0.179468 GGGCAAGTATCACCCGCTAA 59.821 55.000 0.00 0.00 32.92 3.09
1646 1720 1.827394 GGGCAAGTATCACCCGCTA 59.173 57.895 0.00 0.00 32.92 4.26
1647 1721 2.590092 GGGCAAGTATCACCCGCT 59.410 61.111 0.00 0.00 32.92 5.52
1650 1724 1.141053 CTGGTAGGGCAAGTATCACCC 59.859 57.143 0.00 0.00 44.62 4.61
1651 1725 1.475213 GCTGGTAGGGCAAGTATCACC 60.475 57.143 0.00 0.00 0.00 4.02
1652 1726 1.209504 TGCTGGTAGGGCAAGTATCAC 59.790 52.381 0.00 0.00 36.71 3.06
1653 1727 1.578897 TGCTGGTAGGGCAAGTATCA 58.421 50.000 0.00 0.00 36.71 2.15
1654 1728 2.710096 TTGCTGGTAGGGCAAGTATC 57.290 50.000 0.00 0.00 43.50 2.24
1659 1733 1.075374 ACTCATTTGCTGGTAGGGCAA 59.925 47.619 0.00 0.00 46.12 4.52
1660 1734 0.698238 ACTCATTTGCTGGTAGGGCA 59.302 50.000 0.00 0.00 37.97 5.36
1661 1735 2.683362 GTTACTCATTTGCTGGTAGGGC 59.317 50.000 0.00 0.00 0.00 5.19
1662 1736 3.950397 TGTTACTCATTTGCTGGTAGGG 58.050 45.455 0.00 0.00 0.00 3.53
1663 1737 5.677091 GCATTGTTACTCATTTGCTGGTAGG 60.677 44.000 0.00 0.00 34.69 3.18
1664 1738 5.335127 GCATTGTTACTCATTTGCTGGTAG 58.665 41.667 0.00 0.00 34.69 3.18
1665 1739 4.157656 GGCATTGTTACTCATTTGCTGGTA 59.842 41.667 0.00 0.00 36.46 3.25
1666 1740 3.056607 GGCATTGTTACTCATTTGCTGGT 60.057 43.478 0.00 0.00 36.46 4.00
1667 1741 3.194116 AGGCATTGTTACTCATTTGCTGG 59.806 43.478 0.00 0.00 36.46 4.85
1668 1742 4.171005 CAGGCATTGTTACTCATTTGCTG 58.829 43.478 0.00 0.00 36.46 4.41
1669 1743 3.367703 GCAGGCATTGTTACTCATTTGCT 60.368 43.478 0.00 0.00 36.46 3.91
1670 1744 2.925563 GCAGGCATTGTTACTCATTTGC 59.074 45.455 0.00 0.00 35.90 3.68
1671 1745 4.445452 AGCAGGCATTGTTACTCATTTG 57.555 40.909 0.00 0.00 0.00 2.32
1672 1746 4.523943 TGAAGCAGGCATTGTTACTCATTT 59.476 37.500 0.00 0.00 0.00 2.32
1673 1747 4.081406 TGAAGCAGGCATTGTTACTCATT 58.919 39.130 0.00 0.00 0.00 2.57
1674 1748 3.689347 TGAAGCAGGCATTGTTACTCAT 58.311 40.909 0.00 0.00 0.00 2.90
1675 1749 3.138884 TGAAGCAGGCATTGTTACTCA 57.861 42.857 0.00 0.00 0.00 3.41
1676 1750 5.586243 TCTTATGAAGCAGGCATTGTTACTC 59.414 40.000 0.00 0.00 0.00 2.59
1677 1751 5.500234 TCTTATGAAGCAGGCATTGTTACT 58.500 37.500 0.00 0.00 0.00 2.24
1678 1752 5.818136 TCTTATGAAGCAGGCATTGTTAC 57.182 39.130 0.00 0.00 0.00 2.50
1679 1753 7.408756 AATTCTTATGAAGCAGGCATTGTTA 57.591 32.000 0.00 0.00 35.44 2.41
1680 1754 5.927281 ATTCTTATGAAGCAGGCATTGTT 57.073 34.783 0.00 0.00 35.44 2.83
1681 1755 5.927281 AATTCTTATGAAGCAGGCATTGT 57.073 34.783 0.00 0.00 35.44 2.71
1682 1756 8.882415 ATTAAATTCTTATGAAGCAGGCATTG 57.118 30.769 0.00 0.00 35.44 2.82
1683 1757 8.698210 TGATTAAATTCTTATGAAGCAGGCATT 58.302 29.630 0.00 0.00 35.44 3.56
1684 1758 8.241497 TGATTAAATTCTTATGAAGCAGGCAT 57.759 30.769 0.00 0.00 35.44 4.40
1685 1759 7.340232 ACTGATTAAATTCTTATGAAGCAGGCA 59.660 33.333 3.59 0.00 35.44 4.75
1686 1760 7.710896 ACTGATTAAATTCTTATGAAGCAGGC 58.289 34.615 3.59 0.00 35.44 4.85
1713 1787 9.454859 CCTCCAATTTTCTATGAAAAGACTACT 57.545 33.333 10.54 0.00 0.00 2.57
1714 1788 9.449719 TCCTCCAATTTTCTATGAAAAGACTAC 57.550 33.333 10.54 0.00 0.00 2.73
1716 1790 8.940397 TTCCTCCAATTTTCTATGAAAAGACT 57.060 30.769 10.54 0.00 0.00 3.24
1717 1791 9.411801 GTTTCCTCCAATTTTCTATGAAAAGAC 57.588 33.333 10.54 0.00 0.00 3.01
1718 1792 8.585018 GGTTTCCTCCAATTTTCTATGAAAAGA 58.415 33.333 10.54 3.45 0.00 2.52
1719 1793 8.367156 TGGTTTCCTCCAATTTTCTATGAAAAG 58.633 33.333 10.54 0.16 34.24 2.27
1720 1794 8.256356 TGGTTTCCTCCAATTTTCTATGAAAA 57.744 30.769 7.75 7.75 34.24 2.29
1721 1795 7.847711 TGGTTTCCTCCAATTTTCTATGAAA 57.152 32.000 0.00 0.00 34.24 2.69
1722 1796 7.847711 TTGGTTTCCTCCAATTTTCTATGAA 57.152 32.000 0.00 0.00 41.79 2.57
1723 1797 7.288852 TGTTTGGTTTCCTCCAATTTTCTATGA 59.711 33.333 0.00 0.00 45.30 2.15
1724 1798 7.441017 TGTTTGGTTTCCTCCAATTTTCTATG 58.559 34.615 0.00 0.00 45.30 2.23
1725 1799 7.610580 TGTTTGGTTTCCTCCAATTTTCTAT 57.389 32.000 0.00 0.00 45.30 1.98
1726 1800 7.425224 TTGTTTGGTTTCCTCCAATTTTCTA 57.575 32.000 0.00 0.00 45.30 2.10
1727 1801 5.948742 TGTTTGGTTTCCTCCAATTTTCT 57.051 34.783 0.00 0.00 45.30 2.52
1728 1802 6.993786 TTTGTTTGGTTTCCTCCAATTTTC 57.006 33.333 0.00 0.00 45.30 2.29
1729 1803 8.898761 GTTATTTGTTTGGTTTCCTCCAATTTT 58.101 29.630 0.00 0.00 45.30 1.82
1730 1804 7.500892 GGTTATTTGTTTGGTTTCCTCCAATTT 59.499 33.333 0.00 0.00 45.30 1.82
1731 1805 6.995686 GGTTATTTGTTTGGTTTCCTCCAATT 59.004 34.615 0.00 0.00 45.30 2.32
1732 1806 6.100424 TGGTTATTTGTTTGGTTTCCTCCAAT 59.900 34.615 0.00 0.00 45.30 3.16
1733 1807 5.425539 TGGTTATTTGTTTGGTTTCCTCCAA 59.574 36.000 0.00 0.00 44.48 3.53
1734 1808 4.962995 TGGTTATTTGTTTGGTTTCCTCCA 59.037 37.500 0.00 0.00 35.49 3.86
1735 1809 5.303333 TCTGGTTATTTGTTTGGTTTCCTCC 59.697 40.000 0.00 0.00 0.00 4.30
1736 1810 6.399639 TCTGGTTATTTGTTTGGTTTCCTC 57.600 37.500 0.00 0.00 0.00 3.71
1737 1811 6.407639 GGTTCTGGTTATTTGTTTGGTTTCCT 60.408 38.462 0.00 0.00 0.00 3.36
1738 1812 5.756347 GGTTCTGGTTATTTGTTTGGTTTCC 59.244 40.000 0.00 0.00 0.00 3.13
1739 1813 6.578944 AGGTTCTGGTTATTTGTTTGGTTTC 58.421 36.000 0.00 0.00 0.00 2.78
1740 1814 6.553953 AGGTTCTGGTTATTTGTTTGGTTT 57.446 33.333 0.00 0.00 0.00 3.27
1741 1815 6.553953 AAGGTTCTGGTTATTTGTTTGGTT 57.446 33.333 0.00 0.00 0.00 3.67
1742 1816 6.553953 AAAGGTTCTGGTTATTTGTTTGGT 57.446 33.333 0.00 0.00 0.00 3.67
1743 1817 7.044798 TCAAAAGGTTCTGGTTATTTGTTTGG 58.955 34.615 0.00 0.00 0.00 3.28
1744 1818 7.763985 ACTCAAAAGGTTCTGGTTATTTGTTTG 59.236 33.333 0.00 0.00 0.00 2.93
1745 1819 7.847096 ACTCAAAAGGTTCTGGTTATTTGTTT 58.153 30.769 0.00 0.00 0.00 2.83
1746 1820 7.418337 ACTCAAAAGGTTCTGGTTATTTGTT 57.582 32.000 0.00 0.00 0.00 2.83
1747 1821 8.706322 ATACTCAAAAGGTTCTGGTTATTTGT 57.294 30.769 0.00 0.00 0.00 2.83
1748 1822 9.981114 AAATACTCAAAAGGTTCTGGTTATTTG 57.019 29.630 0.00 0.00 0.00 2.32
1774 1848 9.084533 ACCCACTCTATTGTTTATGCTTAAAAA 57.915 29.630 6.38 0.00 0.00 1.94
1775 1849 8.644374 ACCCACTCTATTGTTTATGCTTAAAA 57.356 30.769 6.38 0.00 0.00 1.52
1776 1850 8.644374 AACCCACTCTATTGTTTATGCTTAAA 57.356 30.769 0.86 0.86 0.00 1.52
1777 1851 7.338449 GGAACCCACTCTATTGTTTATGCTTAA 59.662 37.037 0.00 0.00 0.00 1.85
1778 1852 6.826741 GGAACCCACTCTATTGTTTATGCTTA 59.173 38.462 0.00 0.00 0.00 3.09
1779 1853 5.652452 GGAACCCACTCTATTGTTTATGCTT 59.348 40.000 0.00 0.00 0.00 3.91
1780 1854 5.044846 AGGAACCCACTCTATTGTTTATGCT 60.045 40.000 0.00 0.00 0.00 3.79
1781 1855 5.193679 AGGAACCCACTCTATTGTTTATGC 58.806 41.667 0.00 0.00 0.00 3.14
1782 1856 7.495934 CAGTAGGAACCCACTCTATTGTTTATG 59.504 40.741 0.00 0.00 0.00 1.90
1783 1857 7.402071 TCAGTAGGAACCCACTCTATTGTTTAT 59.598 37.037 0.00 0.00 0.00 1.40
1784 1858 6.727231 TCAGTAGGAACCCACTCTATTGTTTA 59.273 38.462 0.00 0.00 0.00 2.01
1785 1859 5.546499 TCAGTAGGAACCCACTCTATTGTTT 59.454 40.000 0.00 0.00 0.00 2.83
1786 1860 5.091552 TCAGTAGGAACCCACTCTATTGTT 58.908 41.667 0.00 0.00 0.00 2.83
1787 1861 4.684724 TCAGTAGGAACCCACTCTATTGT 58.315 43.478 0.00 0.00 0.00 2.71
1788 1862 5.677319 TTCAGTAGGAACCCACTCTATTG 57.323 43.478 0.00 0.00 0.00 1.90
1800 1874 7.297936 TGAACACTCAATAGTTCAGTAGGAA 57.702 36.000 4.07 0.00 46.46 3.36
1801 1875 6.911250 TGAACACTCAATAGTTCAGTAGGA 57.089 37.500 4.07 0.00 46.46 2.94
1810 1884 9.512588 AGAAGATCAATTTGAACACTCAATAGT 57.487 29.630 2.68 0.00 41.22 2.12
1892 1966 9.844257 TTTGGGAAGTTCACATGAAAAATATTT 57.156 25.926 9.03 0.00 35.58 1.40
1893 1967 9.271828 GTTTGGGAAGTTCACATGAAAAATATT 57.728 29.630 9.03 0.00 35.58 1.28
1894 1968 8.428063 TGTTTGGGAAGTTCACATGAAAAATAT 58.572 29.630 9.03 0.00 35.58 1.28
1895 1969 7.786030 TGTTTGGGAAGTTCACATGAAAAATA 58.214 30.769 9.03 0.00 35.58 1.40
1896 1970 6.648192 TGTTTGGGAAGTTCACATGAAAAAT 58.352 32.000 9.03 0.00 35.58 1.82
1897 1971 6.042638 TGTTTGGGAAGTTCACATGAAAAA 57.957 33.333 9.03 0.00 35.58 1.94
1898 1972 5.667539 TGTTTGGGAAGTTCACATGAAAA 57.332 34.783 9.03 0.00 35.58 2.29
1899 1973 5.362143 TGATGTTTGGGAAGTTCACATGAAA 59.638 36.000 9.03 0.00 35.58 2.69
1900 1974 4.892345 TGATGTTTGGGAAGTTCACATGAA 59.108 37.500 9.03 0.00 24.99 2.57
1901 1975 4.468713 TGATGTTTGGGAAGTTCACATGA 58.531 39.130 9.03 0.00 24.99 3.07
1902 1976 4.852134 TGATGTTTGGGAAGTTCACATG 57.148 40.909 9.03 0.00 24.99 3.21
1903 1977 5.327732 AGATGATGTTTGGGAAGTTCACAT 58.672 37.500 9.03 7.44 24.99 3.21
1904 1978 4.728772 AGATGATGTTTGGGAAGTTCACA 58.271 39.130 2.93 2.93 0.00 3.58
1905 1979 4.761739 TGAGATGATGTTTGGGAAGTTCAC 59.238 41.667 5.01 0.62 0.00 3.18
1906 1980 4.984295 TGAGATGATGTTTGGGAAGTTCA 58.016 39.130 5.01 0.00 0.00 3.18
1907 1981 5.649395 TGATGAGATGATGTTTGGGAAGTTC 59.351 40.000 0.00 0.00 0.00 3.01
1908 1982 5.573219 TGATGAGATGATGTTTGGGAAGTT 58.427 37.500 0.00 0.00 0.00 2.66
1909 1983 5.183530 TGATGAGATGATGTTTGGGAAGT 57.816 39.130 0.00 0.00 0.00 3.01
1910 1984 6.710597 ATTGATGAGATGATGTTTGGGAAG 57.289 37.500 0.00 0.00 0.00 3.46
1911 1985 6.664384 TGAATTGATGAGATGATGTTTGGGAA 59.336 34.615 0.00 0.00 0.00 3.97
1912 1986 6.189133 TGAATTGATGAGATGATGTTTGGGA 58.811 36.000 0.00 0.00 0.00 4.37
1913 1987 6.459670 TGAATTGATGAGATGATGTTTGGG 57.540 37.500 0.00 0.00 0.00 4.12
1914 1988 7.489160 ACATGAATTGATGAGATGATGTTTGG 58.511 34.615 12.12 0.00 0.00 3.28
1915 1989 7.376072 CGACATGAATTGATGAGATGATGTTTG 59.624 37.037 12.12 0.00 0.00 2.93
1916 1990 7.066645 ACGACATGAATTGATGAGATGATGTTT 59.933 33.333 12.12 0.00 0.00 2.83
1917 1991 6.541278 ACGACATGAATTGATGAGATGATGTT 59.459 34.615 12.12 0.00 0.00 2.71
1918 1992 6.018180 CACGACATGAATTGATGAGATGATGT 60.018 38.462 12.12 0.00 0.00 3.06
1919 1993 6.018180 ACACGACATGAATTGATGAGATGATG 60.018 38.462 12.12 3.96 0.00 3.07
1920 1994 6.053650 ACACGACATGAATTGATGAGATGAT 58.946 36.000 12.12 0.00 0.00 2.45
1921 1995 5.422145 ACACGACATGAATTGATGAGATGA 58.578 37.500 12.12 0.00 0.00 2.92
1922 1996 5.729974 ACACGACATGAATTGATGAGATG 57.270 39.130 12.12 8.32 0.00 2.90
1923 1997 5.645067 ACAACACGACATGAATTGATGAGAT 59.355 36.000 12.12 0.00 0.00 2.75
1924 1998 4.996758 ACAACACGACATGAATTGATGAGA 59.003 37.500 12.12 0.00 0.00 3.27
1925 1999 5.287170 ACAACACGACATGAATTGATGAG 57.713 39.130 12.12 7.59 0.00 2.90
1926 2000 5.687770 AACAACACGACATGAATTGATGA 57.312 34.783 12.12 0.00 0.00 2.92
1927 2001 5.343058 GGAAACAACACGACATGAATTGATG 59.657 40.000 3.09 3.09 0.00 3.07
1928 2002 5.460646 GGAAACAACACGACATGAATTGAT 58.539 37.500 0.00 0.00 0.00 2.57
1929 2003 4.261405 GGGAAACAACACGACATGAATTGA 60.261 41.667 0.00 0.00 0.00 2.57
1930 2004 3.980775 GGGAAACAACACGACATGAATTG 59.019 43.478 0.00 0.00 0.00 2.32
1931 2005 3.634448 TGGGAAACAACACGACATGAATT 59.366 39.130 0.00 0.00 0.00 2.17
1932 2006 3.218453 TGGGAAACAACACGACATGAAT 58.782 40.909 0.00 0.00 0.00 2.57
1933 2007 2.644676 TGGGAAACAACACGACATGAA 58.355 42.857 0.00 0.00 0.00 2.57
1934 2008 2.333688 TGGGAAACAACACGACATGA 57.666 45.000 0.00 0.00 0.00 3.07
1935 2009 3.428746 TTTGGGAAACAACACGACATG 57.571 42.857 0.00 0.00 39.19 3.21
1936 2010 5.708948 CATATTTGGGAAACAACACGACAT 58.291 37.500 0.00 0.00 39.19 3.06
1937 2011 4.557695 GCATATTTGGGAAACAACACGACA 60.558 41.667 0.00 0.00 39.19 4.35
1938 2012 3.917985 GCATATTTGGGAAACAACACGAC 59.082 43.478 0.00 0.00 39.19 4.34
1939 2013 3.570125 TGCATATTTGGGAAACAACACGA 59.430 39.130 0.00 0.00 39.19 4.35
1940 2014 3.906998 TGCATATTTGGGAAACAACACG 58.093 40.909 0.00 0.00 39.19 4.49
1941 2015 7.412891 GCTTAATGCATATTTGGGAAACAACAC 60.413 37.037 0.00 0.00 39.25 3.32
1942 2016 6.593382 GCTTAATGCATATTTGGGAAACAACA 59.407 34.615 0.00 0.00 39.25 3.33
1943 2017 6.037062 GGCTTAATGCATATTTGGGAAACAAC 59.963 38.462 0.00 0.00 45.15 3.32
1944 2018 6.112058 GGCTTAATGCATATTTGGGAAACAA 58.888 36.000 0.00 0.00 45.15 2.83
1945 2019 5.188555 TGGCTTAATGCATATTTGGGAAACA 59.811 36.000 0.00 0.00 45.15 2.83
1946 2020 5.669477 TGGCTTAATGCATATTTGGGAAAC 58.331 37.500 0.00 0.00 45.15 2.78
1947 2021 5.946942 TGGCTTAATGCATATTTGGGAAA 57.053 34.783 0.00 0.00 45.15 3.13
1948 2022 5.601729 TCATGGCTTAATGCATATTTGGGAA 59.398 36.000 0.00 0.00 45.15 3.97
1949 2023 5.146298 TCATGGCTTAATGCATATTTGGGA 58.854 37.500 0.00 0.00 45.15 4.37
1950 2024 5.471556 TCATGGCTTAATGCATATTTGGG 57.528 39.130 0.00 0.00 45.15 4.12
1951 2025 6.460781 ACATCATGGCTTAATGCATATTTGG 58.539 36.000 0.00 0.00 45.15 3.28
1952 2026 7.439955 ACAACATCATGGCTTAATGCATATTTG 59.560 33.333 0.00 0.00 45.15 2.32
1953 2027 7.502696 ACAACATCATGGCTTAATGCATATTT 58.497 30.769 0.00 0.00 45.15 1.40
1954 2028 7.058023 ACAACATCATGGCTTAATGCATATT 57.942 32.000 0.00 0.00 45.15 1.28
1955 2029 6.659745 ACAACATCATGGCTTAATGCATAT 57.340 33.333 0.00 0.00 45.15 1.78
1956 2030 7.579761 TTACAACATCATGGCTTAATGCATA 57.420 32.000 0.00 0.00 45.15 3.14
1957 2031 6.468333 TTACAACATCATGGCTTAATGCAT 57.532 33.333 0.00 0.00 45.15 3.96
1958 2032 5.911378 TTACAACATCATGGCTTAATGCA 57.089 34.783 0.00 0.00 45.15 3.96
1959 2033 8.918658 CATAATTACAACATCATGGCTTAATGC 58.081 33.333 0.00 0.00 41.94 3.56
1960 2034 9.970395 ACATAATTACAACATCATGGCTTAATG 57.030 29.630 0.00 0.00 0.00 1.90
1964 2038 9.723601 AAAAACATAATTACAACATCATGGCTT 57.276 25.926 0.00 0.00 0.00 4.35
1987 2061 9.832445 TTTTAACCTAATTGCATGGTGTAAAAA 57.168 25.926 0.00 12.86 33.89 1.94
2011 2085 9.973450 TGTATGTTTGCACACTACATTTTATTT 57.027 25.926 4.37 0.00 35.03 1.40
2015 2089 9.571810 CATATGTATGTTTGCACACTACATTTT 57.428 29.630 21.94 13.49 37.96 1.82
2016 2090 8.739039 ACATATGTATGTTTGCACACTACATTT 58.261 29.630 21.94 15.95 43.99 2.32
2017 2091 8.183536 CACATATGTATGTTTGCACACTACATT 58.816 33.333 21.94 13.24 43.99 2.71
2018 2092 7.336679 ACACATATGTATGTTTGCACACTACAT 59.663 33.333 21.16 21.16 43.99 2.29
2019 2093 6.652900 ACACATATGTATGTTTGCACACTACA 59.347 34.615 8.32 13.79 43.99 2.74
2020 2094 7.072177 ACACATATGTATGTTTGCACACTAC 57.928 36.000 8.32 5.35 43.99 2.73
2048 2122 9.130312 GCGTAGGTATCTTTTCTTCATACATAG 57.870 37.037 0.00 0.00 0.00 2.23
2049 2123 8.086522 GGCGTAGGTATCTTTTCTTCATACATA 58.913 37.037 0.00 0.00 0.00 2.29
2050 2124 6.929606 GGCGTAGGTATCTTTTCTTCATACAT 59.070 38.462 0.00 0.00 0.00 2.29
2051 2125 6.097839 AGGCGTAGGTATCTTTTCTTCATACA 59.902 38.462 0.00 0.00 0.00 2.29
2052 2126 6.514063 AGGCGTAGGTATCTTTTCTTCATAC 58.486 40.000 0.00 0.00 0.00 2.39
2053 2127 6.726490 AGGCGTAGGTATCTTTTCTTCATA 57.274 37.500 0.00 0.00 0.00 2.15
2054 2128 5.615925 AGGCGTAGGTATCTTTTCTTCAT 57.384 39.130 0.00 0.00 0.00 2.57
2055 2129 5.416271 AAGGCGTAGGTATCTTTTCTTCA 57.584 39.130 0.00 0.00 0.00 3.02
2056 2130 5.873164 TCAAAGGCGTAGGTATCTTTTCTTC 59.127 40.000 0.00 0.00 0.00 2.87
2057 2131 5.801380 TCAAAGGCGTAGGTATCTTTTCTT 58.199 37.500 0.00 0.00 0.00 2.52
2058 2132 5.416271 TCAAAGGCGTAGGTATCTTTTCT 57.584 39.130 0.00 0.00 0.00 2.52
2059 2133 6.679327 ATTCAAAGGCGTAGGTATCTTTTC 57.321 37.500 0.00 0.00 0.00 2.29
2095 2169 6.442952 TGTTTGTATGATTCTTCCGTTTTGG 58.557 36.000 0.00 0.00 40.09 3.28
2096 2170 9.787532 ATATGTTTGTATGATTCTTCCGTTTTG 57.212 29.630 0.00 0.00 0.00 2.44
2099 2173 9.832445 AGTATATGTTTGTATGATTCTTCCGTT 57.168 29.630 0.00 0.00 0.00 4.44
2128 2202 9.626045 GGTGTATTTTTCTTCTTTTATGTGGAG 57.374 33.333 0.00 0.00 0.00 3.86
2129 2203 9.362151 AGGTGTATTTTTCTTCTTTTATGTGGA 57.638 29.630 0.00 0.00 0.00 4.02
2130 2204 9.626045 GAGGTGTATTTTTCTTCTTTTATGTGG 57.374 33.333 0.00 0.00 0.00 4.17
2131 2205 9.626045 GGAGGTGTATTTTTCTTCTTTTATGTG 57.374 33.333 0.00 0.00 0.00 3.21
2132 2206 8.512138 CGGAGGTGTATTTTTCTTCTTTTATGT 58.488 33.333 0.00 0.00 0.00 2.29
2133 2207 8.726988 TCGGAGGTGTATTTTTCTTCTTTTATG 58.273 33.333 0.00 0.00 0.00 1.90
2134 2208 8.857694 TCGGAGGTGTATTTTTCTTCTTTTAT 57.142 30.769 0.00 0.00 0.00 1.40
2135 2209 7.935210 ACTCGGAGGTGTATTTTTCTTCTTTTA 59.065 33.333 10.23 0.00 0.00 1.52
2136 2210 6.771267 ACTCGGAGGTGTATTTTTCTTCTTTT 59.229 34.615 10.23 0.00 0.00 2.27
2137 2211 6.296803 ACTCGGAGGTGTATTTTTCTTCTTT 58.703 36.000 10.23 0.00 0.00 2.52
2138 2212 5.866207 ACTCGGAGGTGTATTTTTCTTCTT 58.134 37.500 10.23 0.00 0.00 2.52
2139 2213 5.485209 ACTCGGAGGTGTATTTTTCTTCT 57.515 39.130 10.23 0.00 0.00 2.85
2140 2214 7.333672 ACAATACTCGGAGGTGTATTTTTCTTC 59.666 37.037 10.23 0.00 36.23 2.87
2141 2215 7.166167 ACAATACTCGGAGGTGTATTTTTCTT 58.834 34.615 10.23 0.00 36.23 2.52
2142 2216 6.708285 ACAATACTCGGAGGTGTATTTTTCT 58.292 36.000 10.23 0.00 36.23 2.52
2143 2217 6.980051 ACAATACTCGGAGGTGTATTTTTC 57.020 37.500 10.23 0.00 36.23 2.29
2144 2218 7.713942 GGATACAATACTCGGAGGTGTATTTTT 59.286 37.037 21.75 9.38 35.94 1.94
2145 2219 7.070821 AGGATACAATACTCGGAGGTGTATTTT 59.929 37.037 21.75 14.78 35.94 1.82
2146 2220 6.553852 AGGATACAATACTCGGAGGTGTATTT 59.446 38.462 21.75 15.00 35.94 1.40
2147 2221 6.075984 AGGATACAATACTCGGAGGTGTATT 58.924 40.000 21.75 11.62 35.94 1.89
2148 2222 5.642165 AGGATACAATACTCGGAGGTGTAT 58.358 41.667 21.33 21.33 37.94 2.29
2149 2223 5.057843 AGGATACAATACTCGGAGGTGTA 57.942 43.478 10.23 13.81 41.41 2.90
2150 2224 3.912248 AGGATACAATACTCGGAGGTGT 58.088 45.455 10.23 12.18 41.41 4.16
2151 2225 4.939052 AAGGATACAATACTCGGAGGTG 57.061 45.455 10.23 6.97 41.41 4.00
2152 2226 5.952347 AAAAGGATACAATACTCGGAGGT 57.048 39.130 10.23 0.00 41.41 3.85
2153 2227 5.527582 CCAAAAAGGATACAATACTCGGAGG 59.472 44.000 10.23 0.00 41.22 4.30
2154 2228 6.113411 ACCAAAAAGGATACAATACTCGGAG 58.887 40.000 2.83 2.83 41.22 4.63
2155 2229 6.057321 ACCAAAAAGGATACAATACTCGGA 57.943 37.500 0.00 0.00 41.22 4.55
2156 2230 6.150474 ACAACCAAAAAGGATACAATACTCGG 59.850 38.462 0.00 0.00 41.22 4.63
2157 2231 7.021196 CACAACCAAAAAGGATACAATACTCG 58.979 38.462 0.00 0.00 41.22 4.18
2158 2232 7.882179 ACACAACCAAAAAGGATACAATACTC 58.118 34.615 0.00 0.00 41.22 2.59
2159 2233 7.833285 ACACAACCAAAAAGGATACAATACT 57.167 32.000 0.00 0.00 41.22 2.12
2160 2234 9.005777 TCTACACAACCAAAAAGGATACAATAC 57.994 33.333 0.00 0.00 41.22 1.89
2161 2235 9.575868 TTCTACACAACCAAAAAGGATACAATA 57.424 29.630 0.00 0.00 41.22 1.90
2162 2236 8.472007 TTCTACACAACCAAAAAGGATACAAT 57.528 30.769 0.00 0.00 41.22 2.71
2163 2237 7.883391 TTCTACACAACCAAAAAGGATACAA 57.117 32.000 0.00 0.00 41.22 2.41
2164 2238 9.575868 TTATTCTACACAACCAAAAAGGATACA 57.424 29.630 0.00 0.00 41.22 2.29
2165 2239 9.836076 GTTATTCTACACAACCAAAAAGGATAC 57.164 33.333 0.00 0.00 41.22 2.24
2166 2240 9.575868 TGTTATTCTACACAACCAAAAAGGATA 57.424 29.630 0.00 0.00 41.22 2.59
2167 2241 8.472007 TGTTATTCTACACAACCAAAAAGGAT 57.528 30.769 0.00 0.00 41.22 3.24
2168 2242 7.883391 TGTTATTCTACACAACCAAAAAGGA 57.117 32.000 0.00 0.00 41.22 3.36
2169 2243 8.977505 CATTGTTATTCTACACAACCAAAAAGG 58.022 33.333 0.00 0.00 45.67 3.11
2170 2244 9.528018 ACATTGTTATTCTACACAACCAAAAAG 57.472 29.630 0.00 0.00 35.75 2.27
2171 2245 9.522804 GACATTGTTATTCTACACAACCAAAAA 57.477 29.630 0.00 0.00 35.75 1.94
2172 2246 8.908903 AGACATTGTTATTCTACACAACCAAAA 58.091 29.630 0.00 0.00 35.75 2.44
2173 2247 8.458573 AGACATTGTTATTCTACACAACCAAA 57.541 30.769 0.00 0.00 35.75 3.28
2174 2248 9.214957 CTAGACATTGTTATTCTACACAACCAA 57.785 33.333 0.00 0.00 35.75 3.67
2175 2249 8.590204 TCTAGACATTGTTATTCTACACAACCA 58.410 33.333 0.00 0.00 35.75 3.67
2176 2250 8.997621 TCTAGACATTGTTATTCTACACAACC 57.002 34.615 0.00 0.00 35.75 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.