Multiple sequence alignment - TraesCS7A01G229600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G229600 chr7A 100.000 4776 0 0 1 4776 200034655 200029880 0.000000e+00 8820.0
1 TraesCS7A01G229600 chr7A 94.545 220 12 0 1941 2160 200064997 200064778 1.650000e-89 340.0
2 TraesCS7A01G229600 chr7A 91.071 112 10 0 1646 1757 200065203 200065092 8.280000e-33 152.0
3 TraesCS7A01G229600 chr7A 94.898 98 4 1 1410 1507 200065418 200065322 8.280000e-33 152.0
4 TraesCS7A01G229600 chr7D 91.333 4050 165 83 4 4006 191495228 191491318 0.000000e+00 5363.0
5 TraesCS7A01G229600 chr7D 92.222 270 18 2 4007 4276 191491265 191490999 3.490000e-101 379.0
6 TraesCS7A01G229600 chr7D 91.928 223 18 0 1941 2163 191557850 191557628 3.590000e-81 313.0
7 TraesCS7A01G229600 chr7D 86.222 225 28 3 4263 4487 191490592 191490371 1.720000e-59 241.0
8 TraesCS7A01G229600 chr7D 76.943 386 66 17 1379 1757 191558314 191557945 1.050000e-46 198.0
9 TraesCS7A01G229600 chr7D 93.805 113 7 0 4514 4626 191490376 191490264 2.290000e-38 171.0
10 TraesCS7A01G229600 chr7B 92.260 2416 110 42 1878 4252 336647600 336645221 0.000000e+00 3354.0
11 TraesCS7A01G229600 chr7B 91.662 1859 89 36 1 1837 336649417 336647603 0.000000e+00 2514.0
12 TraesCS7A01G229600 chr7B 91.403 221 19 0 1941 2161 336718602 336718382 2.160000e-78 303.0
13 TraesCS7A01G229600 chr7B 95.918 98 3 1 1410 1507 336719035 336718939 1.780000e-34 158.0
14 TraesCS7A01G229600 chr6D 78.076 821 130 40 2645 3432 362988622 362989425 1.560000e-129 473.0
15 TraesCS7A01G229600 chr6D 91.739 230 16 3 1942 2170 362987940 362988167 2.770000e-82 316.0
16 TraesCS7A01G229600 chr6A 78.175 811 127 40 2645 3432 503426841 503427624 5.590000e-129 472.0
17 TraesCS7A01G229600 chr6A 91.304 230 17 3 1942 2170 503426201 503426428 1.290000e-80 311.0
18 TraesCS7A01G229600 chr6B 78.182 770 127 36 2645 3395 544404573 544405320 2.030000e-123 453.0
19 TraesCS7A01G229600 chr6B 91.111 225 18 2 1942 2165 544403588 544403811 2.160000e-78 303.0
20 TraesCS7A01G229600 chr5B 87.402 127 16 0 2705 2831 532892218 532892092 3.850000e-31 147.0
21 TraesCS7A01G229600 chr5B 86.667 60 8 0 1692 1751 504833468 504833409 3.080000e-07 67.6
22 TraesCS7A01G229600 chr2D 81.538 130 19 5 2705 2831 188838220 188838347 8.460000e-18 102.0
23 TraesCS7A01G229600 chr2D 78.322 143 25 3 2692 2831 190033579 190033440 2.370000e-13 87.9
24 TraesCS7A01G229600 chr5D 77.273 176 33 6 1971 2141 322001509 322001682 3.930000e-16 97.1
25 TraesCS7A01G229600 chr2A 80.769 130 20 5 2705 2831 202890566 202890693 3.930000e-16 97.1
26 TraesCS7A01G229600 chr5A 84.211 57 9 0 1695 1751 531083364 531083308 6.680000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G229600 chr7A 200029880 200034655 4775 True 8820.000000 8820 100.000000 1 4776 1 chr7A.!!$R1 4775
1 TraesCS7A01G229600 chr7A 200064778 200065418 640 True 214.666667 340 93.504667 1410 2160 3 chr7A.!!$R2 750
2 TraesCS7A01G229600 chr7D 191490264 191495228 4964 True 1538.500000 5363 90.895500 4 4626 4 chr7D.!!$R1 4622
3 TraesCS7A01G229600 chr7D 191557628 191558314 686 True 255.500000 313 84.435500 1379 2163 2 chr7D.!!$R2 784
4 TraesCS7A01G229600 chr7B 336645221 336649417 4196 True 2934.000000 3354 91.961000 1 4252 2 chr7B.!!$R1 4251
5 TraesCS7A01G229600 chr7B 336718382 336719035 653 True 230.500000 303 93.660500 1410 2161 2 chr7B.!!$R2 751
6 TraesCS7A01G229600 chr6D 362987940 362989425 1485 False 394.500000 473 84.907500 1942 3432 2 chr6D.!!$F1 1490
7 TraesCS7A01G229600 chr6A 503426201 503427624 1423 False 391.500000 472 84.739500 1942 3432 2 chr6A.!!$F1 1490
8 TraesCS7A01G229600 chr6B 544403588 544405320 1732 False 378.000000 453 84.646500 1942 3395 2 chr6B.!!$F1 1453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 401 0.503117 GTTTGACGCACTCTCGTGTC 59.497 55.0 0.00 0.0 43.42 3.67 F
1022 1058 0.181350 CGCCCTTTAGAAGCCAGGAT 59.819 55.0 0.00 0.0 0.00 3.24 F
1042 1078 0.243636 AAATAACTGCGCTGTTGCCC 59.756 50.0 34.29 0.0 35.36 5.36 F
2958 3567 0.544357 ACTCACCTGAATCCCGGTCA 60.544 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1567 0.519077 CAAGAAGAAGCAAGCCGGTC 59.481 55.0 1.90 0.0 0.00 4.79 R
2409 2940 0.035439 ATCCGGCCACTTACAGGTTG 60.035 55.0 2.24 0.0 0.00 3.77 R
3006 3615 0.596577 TCCGACTTCACCGAGAACAG 59.403 55.0 0.00 0.0 31.61 3.16 R
4498 5611 0.097674 CTGCATCTTGTACGCTTGCC 59.902 55.0 0.00 0.0 32.39 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 9.364989 TGTTTCTTTCTTAAAACTTGTGGATTG 57.635 29.630 0.00 0.00 36.54 2.67
181 182 6.773976 TTTAGGGCTTCATTTTAGACCATG 57.226 37.500 0.00 0.00 43.76 3.66
253 254 4.689345 ACACTTTACTTATCGTTCACCAGC 59.311 41.667 0.00 0.00 0.00 4.85
364 378 1.342374 ACCCCATCCCAAGATCAAAGC 60.342 52.381 0.00 0.00 0.00 3.51
366 380 1.342275 CCCATCCCAAGATCAAAGCCA 60.342 52.381 0.00 0.00 0.00 4.75
382 396 1.569479 GCCAGGTTTGACGCACTCTC 61.569 60.000 0.00 0.00 0.00 3.20
383 397 1.284982 CCAGGTTTGACGCACTCTCG 61.285 60.000 0.00 0.00 0.00 4.04
384 398 0.597637 CAGGTTTGACGCACTCTCGT 60.598 55.000 0.00 0.00 46.38 4.18
385 399 0.597637 AGGTTTGACGCACTCTCGTG 60.598 55.000 0.00 0.00 43.42 4.35
386 400 0.874607 GGTTTGACGCACTCTCGTGT 60.875 55.000 0.00 0.00 43.42 4.49
387 401 0.503117 GTTTGACGCACTCTCGTGTC 59.497 55.000 0.00 0.00 43.42 3.67
388 402 0.596600 TTTGACGCACTCTCGTGTCC 60.597 55.000 0.00 0.00 44.14 4.02
391 405 1.303074 ACGCACTCTCGTGTCCCTA 60.303 57.895 0.00 0.00 43.16 3.53
405 419 6.812998 TCGTGTCCCTATAAAAGTGGATTAG 58.187 40.000 0.00 0.00 30.26 1.73
480 494 8.902806 ACTTTGTCAATCTTGAACATCTGTAAA 58.097 29.630 0.00 0.00 39.21 2.01
500 514 4.815533 AATGCAGTCATCAGTAGACACT 57.184 40.909 0.00 0.00 38.46 3.55
549 575 5.531634 CACACCTCTACGTTTTAGTTGGTA 58.468 41.667 0.00 0.00 0.00 3.25
655 681 3.012518 CGAAGCAATGTCCCTTCAAGAT 58.987 45.455 0.00 0.00 37.83 2.40
658 686 5.565439 CGAAGCAATGTCCCTTCAAGATTTT 60.565 40.000 0.00 0.00 37.83 1.82
793 826 9.360093 CACTAAGACCTAACTGACTTAATGAAG 57.640 37.037 0.00 0.00 38.76 3.02
839 872 6.148150 GGACAGGTAGACTAATCTATCGTGAG 59.852 46.154 9.08 0.00 42.61 3.51
851 884 2.479566 ATCGTGAGCATGACTGGTTT 57.520 45.000 0.00 0.00 31.99 3.27
857 890 2.107378 TGAGCATGACTGGTTTTACCCA 59.893 45.455 0.00 0.00 37.50 4.51
863 896 3.283751 TGACTGGTTTTACCCACACTTG 58.716 45.455 0.00 0.00 37.50 3.16
875 909 3.068024 ACCCACACTTGTTTACTTGCATG 59.932 43.478 0.00 0.00 0.00 4.06
883 917 6.426937 CACTTGTTTACTTGCATGGTACTACT 59.573 38.462 4.44 0.00 0.00 2.57
885 919 8.319146 ACTTGTTTACTTGCATGGTACTACTAT 58.681 33.333 4.44 0.00 0.00 2.12
886 920 9.811995 CTTGTTTACTTGCATGGTACTACTATA 57.188 33.333 4.44 0.00 0.00 1.31
887 921 9.590451 TTGTTTACTTGCATGGTACTACTATAC 57.410 33.333 4.44 0.00 0.00 1.47
888 922 8.974238 TGTTTACTTGCATGGTACTACTATACT 58.026 33.333 4.44 0.00 0.00 2.12
891 925 9.857656 TTACTTGCATGGTACTACTATACTAGT 57.142 33.333 0.00 0.00 42.68 2.57
892 926 8.763984 ACTTGCATGGTACTACTATACTAGTT 57.236 34.615 0.00 0.00 40.14 2.24
893 927 8.848182 ACTTGCATGGTACTACTATACTAGTTC 58.152 37.037 0.00 0.00 40.14 3.01
894 928 8.756486 TTGCATGGTACTACTATACTAGTTCA 57.244 34.615 0.00 0.00 40.14 3.18
985 1021 8.686334 GGTATGCAAAAAGAAGAGGATAATGAA 58.314 33.333 0.00 0.00 0.00 2.57
1013 1049 0.810648 CTGCAAATGCGCCCTTTAGA 59.189 50.000 4.18 0.00 45.83 2.10
1014 1050 1.202114 CTGCAAATGCGCCCTTTAGAA 59.798 47.619 4.18 0.00 45.83 2.10
1015 1051 1.202114 TGCAAATGCGCCCTTTAGAAG 59.798 47.619 4.18 0.00 45.83 2.85
1016 1052 1.913317 CAAATGCGCCCTTTAGAAGC 58.087 50.000 4.18 0.00 0.00 3.86
1017 1053 0.817654 AAATGCGCCCTTTAGAAGCC 59.182 50.000 4.18 0.00 0.00 4.35
1019 1055 0.749454 ATGCGCCCTTTAGAAGCCAG 60.749 55.000 4.18 0.00 0.00 4.85
1020 1056 2.115291 GCGCCCTTTAGAAGCCAGG 61.115 63.158 0.00 0.00 0.00 4.45
1021 1057 1.602237 CGCCCTTTAGAAGCCAGGA 59.398 57.895 0.00 0.00 0.00 3.86
1022 1058 0.181350 CGCCCTTTAGAAGCCAGGAT 59.819 55.000 0.00 0.00 0.00 3.24
1023 1059 1.416401 CGCCCTTTAGAAGCCAGGATA 59.584 52.381 0.00 0.00 0.00 2.59
1034 1070 2.222027 AGCCAGGATAAATAACTGCGC 58.778 47.619 0.00 0.00 0.00 6.09
1041 1077 2.911819 TAAATAACTGCGCTGTTGCC 57.088 45.000 34.29 0.00 35.36 4.52
1042 1078 0.243636 AAATAACTGCGCTGTTGCCC 59.756 50.000 34.29 0.00 35.36 5.36
1043 1079 1.922135 AATAACTGCGCTGTTGCCCG 61.922 55.000 34.29 6.06 35.36 6.13
1130 1166 1.500844 CAACTGCTGCTGCTGCTAC 59.499 57.895 27.67 9.05 41.07 3.58
1131 1167 0.954449 CAACTGCTGCTGCTGCTACT 60.954 55.000 27.67 12.11 41.07 2.57
1132 1168 0.610174 AACTGCTGCTGCTGCTACTA 59.390 50.000 27.67 10.41 41.07 1.82
1188 1224 3.775654 CTCACTCCCACTCCCCGC 61.776 72.222 0.00 0.00 0.00 6.13
1217 1256 1.546961 TCTCACGTCTTTCTCCTCCC 58.453 55.000 0.00 0.00 0.00 4.30
1240 1279 1.068121 CCTCCTCCCTTTTCACCACT 58.932 55.000 0.00 0.00 0.00 4.00
1269 1308 3.136123 CAGGCAATCACCGGCAGG 61.136 66.667 0.00 0.00 45.13 4.85
1283 1322 2.685380 CAGGGACCTTCCTCCGCT 60.685 66.667 0.00 0.00 36.57 5.52
1339 1378 4.760047 GGCTCATGGGCACGTCGT 62.760 66.667 21.47 0.00 40.53 4.34
1525 1567 3.057547 CTCCGCCGTCTCTGACTGG 62.058 68.421 0.00 0.00 32.46 4.00
1586 1637 6.222038 AGTGAAGTAGGAATGCGAATCTTA 57.778 37.500 0.00 0.00 0.00 2.10
1590 1641 9.042008 GTGAAGTAGGAATGCGAATCTTATTTA 57.958 33.333 0.00 0.00 0.00 1.40
1654 1711 4.933064 CGGCCGATGTCGAGCTCC 62.933 72.222 24.07 0.00 43.95 4.70
1767 1824 4.083110 TGTCTACAGAGTACGTGCTTTACC 60.083 45.833 7.83 0.00 0.00 2.85
1771 1831 3.192212 ACAGAGTACGTGCTTTACCTACC 59.808 47.826 7.83 0.00 0.00 3.18
1791 1860 9.705103 ACCTACCACAGTTGATTAGTAGTATTA 57.295 33.333 0.00 0.00 0.00 0.98
1815 1884 4.524053 TCAAGAATCATCTGCTCTGCAAT 58.476 39.130 0.00 0.00 38.41 3.56
1818 1887 6.600427 TCAAGAATCATCTGCTCTGCAATTTA 59.400 34.615 0.00 0.00 38.41 1.40
1819 1888 6.621316 AGAATCATCTGCTCTGCAATTTAG 57.379 37.500 0.00 0.00 38.41 1.85
1820 1889 4.832590 ATCATCTGCTCTGCAATTTAGC 57.167 40.909 0.00 0.00 38.41 3.09
1850 1920 5.666718 TCTCTTACTAGCTAGTCCCTAGTGT 59.333 44.000 29.28 5.71 43.81 3.55
1872 1942 7.599245 AGTGTACTTAACATTTGTGTAGAGAGC 59.401 37.037 0.00 0.00 41.10 4.09
1898 1968 1.757118 CTCTCCCGCCATTTCTGTCTA 59.243 52.381 0.00 0.00 0.00 2.59
1920 1992 1.537202 GCTGAACCGAGCTTTGATTGT 59.463 47.619 0.00 0.00 35.95 2.71
2170 2246 2.359975 GGTGCGTCCCTTTCCCTG 60.360 66.667 0.00 0.00 0.00 4.45
2195 2271 2.691409 TTCACCCGTCTCATCCATTC 57.309 50.000 0.00 0.00 0.00 2.67
2210 2286 2.169769 TCCATTCCGGTTGGTAGCTAAG 59.830 50.000 20.71 0.00 35.64 2.18
2211 2287 1.940613 CATTCCGGTTGGTAGCTAAGC 59.059 52.381 0.00 0.00 36.30 3.09
2212 2288 1.272807 TTCCGGTTGGTAGCTAAGCT 58.727 50.000 0.00 0.00 43.41 3.74
2213 2289 0.822164 TCCGGTTGGTAGCTAAGCTC 59.178 55.000 0.00 0.00 40.44 4.09
2240 2653 0.686112 AAAGAGCTCGAGGAGGAGGG 60.686 60.000 15.58 0.00 34.56 4.30
2281 2806 1.143183 TCGCGCCATTAACTCCCTC 59.857 57.895 0.00 0.00 0.00 4.30
2377 2907 5.419760 AATCGAGCAATCTGTCATTGATG 57.580 39.130 0.00 0.00 0.00 3.07
2497 3070 3.824133 ACTAACTACGCCCCAAGTTTTT 58.176 40.909 0.00 0.00 37.19 1.94
2502 3075 2.342279 GCCCCAAGTTTTTCGGCC 59.658 61.111 0.00 0.00 33.30 6.13
2506 3079 1.284715 CCAAGTTTTTCGGCCGGAC 59.715 57.895 27.83 18.29 0.00 4.79
2527 3100 7.106663 GGACAACGAGATCCTTAATTAATCG 57.893 40.000 13.78 13.78 35.00 3.34
2529 3105 6.579865 ACAACGAGATCCTTAATTAATCGGT 58.420 36.000 17.69 11.38 33.25 4.69
2534 3110 6.346919 CGAGATCCTTAATTAATCGGTTGCTG 60.347 42.308 9.33 0.00 0.00 4.41
2546 3122 1.799181 CGGTTGCTGGTGATCTCTACG 60.799 57.143 0.00 0.00 0.00 3.51
2547 3123 1.471676 GGTTGCTGGTGATCTCTACGG 60.472 57.143 0.00 0.00 0.00 4.02
2631 3208 5.494632 AACTGTTACTGTTACCACTTTGC 57.505 39.130 5.84 0.00 0.00 3.68
2884 3476 0.729116 CGTCGGAACCTAGTAAGCGA 59.271 55.000 0.00 0.00 0.00 4.93
2887 3479 1.952296 TCGGAACCTAGTAAGCGATCC 59.048 52.381 0.00 0.00 0.00 3.36
2907 3503 1.739067 GACCACCTCCATTACTGTGC 58.261 55.000 0.00 0.00 0.00 4.57
2951 3560 3.273434 TGCATGCTTACTCACCTGAATC 58.727 45.455 20.33 0.00 0.00 2.52
2958 3567 0.544357 ACTCACCTGAATCCCGGTCA 60.544 55.000 0.00 0.00 0.00 4.02
3006 3615 1.153349 GAGTTCGTGATGGAGGGCC 60.153 63.158 0.00 0.00 0.00 5.80
3133 3760 4.274214 CCTCATCCAAGACGTACGTACATA 59.726 45.833 22.87 6.65 0.00 2.29
3135 3762 6.381481 TCATCCAAGACGTACGTACATAAT 57.619 37.500 22.87 9.85 0.00 1.28
3165 3803 6.375736 TCTCAAGAACTCTACTGGTATCACTG 59.624 42.308 0.00 0.00 0.00 3.66
3371 4011 2.889617 CCGACCATGTCCAGCGTA 59.110 61.111 0.00 0.00 0.00 4.42
3399 4039 1.434622 GCTCATCAGCGACCACATGG 61.435 60.000 0.00 0.00 35.39 3.66
3555 4195 2.537560 CCGCGATGAGGTTGATGGC 61.538 63.158 8.23 0.00 0.00 4.40
3603 4243 3.181502 GCTAGCAGCTGAAATGTTCTTCC 60.182 47.826 20.43 0.00 38.45 3.46
3680 4321 3.444657 CACAAAGCTTCGTGCAGAC 57.555 52.632 4.27 0.00 45.94 3.51
3688 4329 1.278172 CTTCGTGCAGACGGTGACAG 61.278 60.000 0.00 0.00 46.11 3.51
3710 4351 1.605710 GTGAGATCCATGGCGAATTGG 59.394 52.381 6.96 0.00 0.00 3.16
3725 4366 3.066621 CGAATTGGGTACACATGATTGGG 59.933 47.826 0.00 0.00 0.00 4.12
3726 4367 3.756082 ATTGGGTACACATGATTGGGT 57.244 42.857 0.00 0.00 43.56 4.51
3727 4368 3.534357 TTGGGTACACATGATTGGGTT 57.466 42.857 0.00 0.00 40.82 4.11
3728 4369 2.801483 TGGGTACACATGATTGGGTTG 58.199 47.619 0.00 0.00 40.82 3.77
3751 4392 6.451393 TGTTTTTCCCGTTGATTAATTCCTG 58.549 36.000 0.00 0.00 0.00 3.86
3772 4413 6.036470 CCTGTGTCAAGAAAAGAAAAGAACC 58.964 40.000 0.00 0.00 0.00 3.62
3775 4416 6.154363 TGTGTCAAGAAAAGAAAAGAACCCAT 59.846 34.615 0.00 0.00 0.00 4.00
3792 4433 3.763897 ACCCATTGGCATAGAAACAGTTC 59.236 43.478 0.00 0.00 33.59 3.01
3850 4491 5.789574 ATTTGGGTAGTGTATCAGGGAAA 57.210 39.130 0.00 0.00 0.00 3.13
3851 4492 4.563140 TTGGGTAGTGTATCAGGGAAAC 57.437 45.455 0.00 0.00 0.00 2.78
3894 4535 2.509052 TCAGAAAGTGGAGTGTGACG 57.491 50.000 0.00 0.00 0.00 4.35
3941 4582 1.264288 GGTCCGCTGAACTTTTGTCTG 59.736 52.381 0.00 0.00 0.00 3.51
3945 4586 0.040067 GCTGAACTTTTGTCTGGGCG 60.040 55.000 0.00 0.00 0.00 6.13
4021 4714 2.396955 CGTAGTGACCGGAGCGAGT 61.397 63.158 9.46 0.00 0.00 4.18
4023 4716 0.656785 GTAGTGACCGGAGCGAGTAG 59.343 60.000 9.46 0.00 0.00 2.57
4097 4790 5.400066 AAAGGTGCTGTTGTTAACTTTGT 57.600 34.783 7.22 0.00 0.00 2.83
4137 4832 1.228124 TTGGCTCAGGTTTCGTGGG 60.228 57.895 0.00 0.00 0.00 4.61
4139 4834 3.056328 GCTCAGGTTTCGTGGGCC 61.056 66.667 0.00 0.00 39.48 5.80
4146 4841 2.193536 GTTTCGTGGGCCTTGTGCT 61.194 57.895 4.53 0.00 40.92 4.40
4234 4929 3.969976 AGCATTGTATTAGGAGGCTGAGA 59.030 43.478 0.00 0.00 0.00 3.27
4247 4942 1.490574 GCTGAGACACCACCCTAGAT 58.509 55.000 0.00 0.00 0.00 1.98
4257 4952 3.560251 CCCTAGATGGTGGGCGGG 61.560 72.222 0.00 0.00 36.61 6.13
4258 4953 3.560251 CCTAGATGGTGGGCGGGG 61.560 72.222 0.00 0.00 0.00 5.73
4261 5374 3.398365 TAGATGGTGGGCGGGGCTA 62.398 63.158 0.00 0.00 0.00 3.93
4289 5402 1.342474 TGGTGCCCTTGAGTCCAAAAA 60.342 47.619 0.00 0.00 0.00 1.94
4300 5413 2.742589 GAGTCCAAAAAGACCGCCTTAG 59.257 50.000 0.00 0.00 37.49 2.18
4312 5425 2.169978 ACCGCCTTAGTTGGTAAGATCC 59.830 50.000 0.00 0.00 40.79 3.36
4332 5445 6.763610 AGATCCAGGAATTCGATTTGTTAGAC 59.236 38.462 0.00 0.00 0.00 2.59
4337 5450 5.523916 AGGAATTCGATTTGTTAGACGATGG 59.476 40.000 0.00 0.00 34.85 3.51
4340 5453 2.167693 TCGATTTGTTAGACGATGGCCT 59.832 45.455 3.32 0.00 0.00 5.19
4392 5505 9.676195 CTTAGATATAGCATTGAGGATGATACG 57.324 37.037 0.00 0.00 38.03 3.06
4393 5506 7.048629 AGATATAGCATTGAGGATGATACGG 57.951 40.000 0.00 0.00 38.03 4.02
4403 5516 5.928976 TGAGGATGATACGGTTTTCATCAT 58.071 37.500 23.62 20.06 46.52 2.45
4406 5519 3.942539 TGATACGGTTTTCATCATGCG 57.057 42.857 0.00 0.00 0.00 4.73
4408 5521 1.732941 TACGGTTTTCATCATGCGCT 58.267 45.000 9.73 0.00 0.00 5.92
4415 5528 2.097680 TTCATCATGCGCTGTGAAGA 57.902 45.000 17.54 15.80 0.00 2.87
4419 5532 4.190772 TCATCATGCGCTGTGAAGAAATA 58.809 39.130 17.54 0.00 0.00 1.40
4420 5533 4.818005 TCATCATGCGCTGTGAAGAAATAT 59.182 37.500 17.54 0.13 0.00 1.28
4422 5535 5.657470 TCATGCGCTGTGAAGAAATATAC 57.343 39.130 9.73 0.00 0.00 1.47
4424 5537 5.463392 TCATGCGCTGTGAAGAAATATACTC 59.537 40.000 9.73 0.00 0.00 2.59
4427 5540 3.796717 CGCTGTGAAGAAATATACTCGCA 59.203 43.478 0.00 0.00 0.00 5.10
4430 5543 4.754322 TGTGAAGAAATATACTCGCAGCA 58.246 39.130 0.00 0.00 0.00 4.41
4431 5544 5.359756 TGTGAAGAAATATACTCGCAGCAT 58.640 37.500 0.00 0.00 0.00 3.79
4432 5545 5.817296 TGTGAAGAAATATACTCGCAGCATT 59.183 36.000 0.00 0.00 0.00 3.56
4433 5546 6.132056 GTGAAGAAATATACTCGCAGCATTG 58.868 40.000 0.00 0.00 0.00 2.82
4449 5562 3.091545 GCATTGAGGATCCCAAACTTGA 58.908 45.455 16.52 0.00 0.00 3.02
4452 5565 5.657474 CATTGAGGATCCCAAACTTGAATG 58.343 41.667 16.52 6.90 0.00 2.67
4460 5573 3.683365 CCAAACTTGAATGGGAAAGGG 57.317 47.619 0.00 0.00 32.87 3.95
4479 5592 1.268948 GGAGACCTCAATACCGCGTAC 60.269 57.143 4.92 0.00 0.00 3.67
4480 5593 1.674962 GAGACCTCAATACCGCGTACT 59.325 52.381 4.92 0.00 0.00 2.73
4481 5594 2.097825 AGACCTCAATACCGCGTACTT 58.902 47.619 4.92 0.00 0.00 2.24
4482 5595 2.494870 AGACCTCAATACCGCGTACTTT 59.505 45.455 4.92 0.00 0.00 2.66
4483 5596 2.856557 GACCTCAATACCGCGTACTTTC 59.143 50.000 4.92 0.00 0.00 2.62
4484 5597 2.231964 ACCTCAATACCGCGTACTTTCA 59.768 45.455 4.92 0.00 0.00 2.69
4485 5598 2.858344 CCTCAATACCGCGTACTTTCAG 59.142 50.000 4.92 0.00 0.00 3.02
4486 5599 2.858344 CTCAATACCGCGTACTTTCAGG 59.142 50.000 4.92 0.00 0.00 3.86
4487 5600 1.326548 CAATACCGCGTACTTTCAGGC 59.673 52.381 4.92 0.00 0.00 4.85
4488 5601 0.533491 ATACCGCGTACTTTCAGGCA 59.467 50.000 4.92 0.00 0.00 4.75
4489 5602 0.317799 TACCGCGTACTTTCAGGCAA 59.682 50.000 4.92 0.00 0.00 4.52
4490 5603 0.321298 ACCGCGTACTTTCAGGCAAT 60.321 50.000 4.92 0.00 0.00 3.56
4491 5604 0.096976 CCGCGTACTTTCAGGCAATG 59.903 55.000 4.92 0.00 0.00 2.82
4492 5605 0.096976 CGCGTACTTTCAGGCAATGG 59.903 55.000 0.00 0.00 0.00 3.16
4493 5606 0.179163 GCGTACTTTCAGGCAATGGC 60.179 55.000 0.00 0.00 40.13 4.40
4510 5623 3.335513 CCAACGGCAAGCGTACAA 58.664 55.556 0.00 0.00 0.00 2.41
4511 5624 1.206578 CCAACGGCAAGCGTACAAG 59.793 57.895 0.00 0.00 0.00 3.16
4512 5625 1.225376 CCAACGGCAAGCGTACAAGA 61.225 55.000 0.00 0.00 0.00 3.02
4518 5631 0.798776 GCAAGCGTACAAGATGCAGT 59.201 50.000 0.00 0.00 43.13 4.40
4569 5682 4.260139 TGTTACTGAACATGAGGCGTTA 57.740 40.909 0.00 0.00 40.72 3.18
4582 5695 1.269448 AGGCGTTACAAAAGGCACATG 59.731 47.619 5.33 0.00 46.01 3.21
4606 5719 7.280356 TGTATTCCTTTTATAGGGAGTTGCTC 58.720 38.462 0.00 0.00 44.86 4.26
4631 5744 4.382320 GTGAACGTGGCGGCCCTA 62.382 66.667 17.97 0.00 0.00 3.53
4632 5745 3.627952 TGAACGTGGCGGCCCTAA 61.628 61.111 17.97 0.00 0.00 2.69
4633 5746 2.818274 GAACGTGGCGGCCCTAAG 60.818 66.667 17.97 7.54 0.00 2.18
4634 5747 3.600898 GAACGTGGCGGCCCTAAGT 62.601 63.158 17.97 8.21 0.00 2.24
4635 5748 3.186656 AACGTGGCGGCCCTAAGTT 62.187 57.895 17.97 13.75 0.00 2.66
4636 5749 1.829523 AACGTGGCGGCCCTAAGTTA 61.830 55.000 17.97 0.00 0.00 2.24
4637 5750 1.078988 CGTGGCGGCCCTAAGTTAA 60.079 57.895 17.97 0.00 0.00 2.01
4638 5751 1.087771 CGTGGCGGCCCTAAGTTAAG 61.088 60.000 17.97 0.00 0.00 1.85
4639 5752 0.746923 GTGGCGGCCCTAAGTTAAGG 60.747 60.000 17.97 0.00 36.30 2.69
4657 5770 3.009115 GGGGGTCTGCTAGTGCCA 61.009 66.667 0.00 0.00 38.71 4.92
4658 5771 2.378634 GGGGGTCTGCTAGTGCCAT 61.379 63.158 0.00 0.00 38.71 4.40
4659 5772 1.147153 GGGGTCTGCTAGTGCCATC 59.853 63.158 0.00 0.00 38.71 3.51
4660 5773 1.227380 GGGTCTGCTAGTGCCATCG 60.227 63.158 0.00 0.00 38.71 3.84
4661 5774 1.676678 GGGTCTGCTAGTGCCATCGA 61.677 60.000 0.00 0.00 38.71 3.59
4662 5775 0.175760 GGTCTGCTAGTGCCATCGAA 59.824 55.000 0.00 0.00 38.71 3.71
4663 5776 1.405526 GGTCTGCTAGTGCCATCGAAA 60.406 52.381 0.00 0.00 38.71 3.46
4664 5777 2.346803 GTCTGCTAGTGCCATCGAAAA 58.653 47.619 0.00 0.00 38.71 2.29
4665 5778 2.939103 GTCTGCTAGTGCCATCGAAAAT 59.061 45.455 0.00 0.00 38.71 1.82
4666 5779 2.938451 TCTGCTAGTGCCATCGAAAATG 59.062 45.455 0.00 0.00 38.71 2.32
4667 5780 2.938451 CTGCTAGTGCCATCGAAAATGA 59.062 45.455 0.00 0.00 38.71 2.57
4668 5781 3.544684 TGCTAGTGCCATCGAAAATGAT 58.455 40.909 0.00 0.00 38.71 2.45
4669 5782 4.702831 TGCTAGTGCCATCGAAAATGATA 58.297 39.130 0.00 0.00 38.71 2.15
4670 5783 4.511454 TGCTAGTGCCATCGAAAATGATAC 59.489 41.667 0.00 0.00 38.71 2.24
4671 5784 4.511454 GCTAGTGCCATCGAAAATGATACA 59.489 41.667 0.00 0.00 0.00 2.29
4672 5785 5.180117 GCTAGTGCCATCGAAAATGATACAT 59.820 40.000 0.00 0.00 0.00 2.29
4673 5786 6.293626 GCTAGTGCCATCGAAAATGATACATT 60.294 38.462 0.00 0.00 0.00 2.71
4674 5787 7.095229 GCTAGTGCCATCGAAAATGATACATTA 60.095 37.037 0.00 0.00 0.00 1.90
4675 5788 7.566760 AGTGCCATCGAAAATGATACATTAA 57.433 32.000 0.00 0.00 0.00 1.40
4676 5789 7.417612 AGTGCCATCGAAAATGATACATTAAC 58.582 34.615 0.00 0.00 0.00 2.01
4677 5790 7.283127 AGTGCCATCGAAAATGATACATTAACT 59.717 33.333 0.00 0.00 0.00 2.24
4678 5791 7.376866 GTGCCATCGAAAATGATACATTAACTG 59.623 37.037 0.00 0.00 0.00 3.16
4679 5792 6.360681 GCCATCGAAAATGATACATTAACTGC 59.639 38.462 0.00 0.00 0.00 4.40
4680 5793 6.857964 CCATCGAAAATGATACATTAACTGCC 59.142 38.462 0.00 0.00 0.00 4.85
4681 5794 6.371809 TCGAAAATGATACATTAACTGCCC 57.628 37.500 0.00 0.00 0.00 5.36
4682 5795 5.298276 TCGAAAATGATACATTAACTGCCCC 59.702 40.000 0.00 0.00 0.00 5.80
4683 5796 5.299279 CGAAAATGATACATTAACTGCCCCT 59.701 40.000 0.00 0.00 0.00 4.79
4684 5797 6.183360 CGAAAATGATACATTAACTGCCCCTT 60.183 38.462 0.00 0.00 0.00 3.95
4685 5798 7.494922 AAAATGATACATTAACTGCCCCTTT 57.505 32.000 0.00 0.00 0.00 3.11
4686 5799 6.469782 AATGATACATTAACTGCCCCTTTG 57.530 37.500 0.00 0.00 0.00 2.77
4687 5800 4.929479 TGATACATTAACTGCCCCTTTGT 58.071 39.130 0.00 0.00 0.00 2.83
4688 5801 5.329399 TGATACATTAACTGCCCCTTTGTT 58.671 37.500 0.00 0.00 0.00 2.83
4689 5802 5.184864 TGATACATTAACTGCCCCTTTGTTG 59.815 40.000 0.00 0.00 0.00 3.33
4690 5803 2.632512 ACATTAACTGCCCCTTTGTTGG 59.367 45.455 0.00 0.00 0.00 3.77
4695 5808 2.743060 GCCCCTTTGTTGGCCAAG 59.257 61.111 21.21 6.83 41.97 3.61
4696 5809 2.882677 GCCCCTTTGTTGGCCAAGG 61.883 63.158 21.21 16.80 41.97 3.61
4697 5810 1.152355 CCCCTTTGTTGGCCAAGGA 60.152 57.895 21.21 7.62 32.08 3.36
4698 5811 1.187567 CCCCTTTGTTGGCCAAGGAG 61.188 60.000 21.21 16.23 32.08 3.69
4699 5812 0.469892 CCCTTTGTTGGCCAAGGAGT 60.470 55.000 21.21 0.00 32.08 3.85
4700 5813 1.413118 CCTTTGTTGGCCAAGGAGTT 58.587 50.000 21.21 0.00 32.08 3.01
4701 5814 2.593026 CCTTTGTTGGCCAAGGAGTTA 58.407 47.619 21.21 0.00 32.08 2.24
4702 5815 2.558359 CCTTTGTTGGCCAAGGAGTTAG 59.442 50.000 21.21 10.32 32.08 2.34
4703 5816 3.486383 CTTTGTTGGCCAAGGAGTTAGA 58.514 45.455 21.21 0.00 32.08 2.10
4704 5817 2.859165 TGTTGGCCAAGGAGTTAGAG 57.141 50.000 21.21 0.00 0.00 2.43
4705 5818 1.351017 TGTTGGCCAAGGAGTTAGAGG 59.649 52.381 21.21 0.00 0.00 3.69
4706 5819 1.351350 GTTGGCCAAGGAGTTAGAGGT 59.649 52.381 21.21 0.00 0.00 3.85
4707 5820 0.984230 TGGCCAAGGAGTTAGAGGTG 59.016 55.000 0.61 0.00 0.00 4.00
4708 5821 0.253327 GGCCAAGGAGTTAGAGGTGG 59.747 60.000 0.00 0.00 0.00 4.61
4709 5822 0.393132 GCCAAGGAGTTAGAGGTGGC 60.393 60.000 0.00 0.00 44.23 5.01
4710 5823 1.280457 CCAAGGAGTTAGAGGTGGCT 58.720 55.000 0.00 0.00 0.00 4.75
4711 5824 1.208293 CCAAGGAGTTAGAGGTGGCTC 59.792 57.143 0.00 0.00 0.00 4.70
4712 5825 2.183679 CAAGGAGTTAGAGGTGGCTCT 58.816 52.381 0.00 0.00 37.48 4.09
4713 5826 2.569404 CAAGGAGTTAGAGGTGGCTCTT 59.431 50.000 0.00 0.00 35.09 2.85
4714 5827 3.759815 AGGAGTTAGAGGTGGCTCTTA 57.240 47.619 0.00 0.00 35.09 2.10
4715 5828 3.367321 AGGAGTTAGAGGTGGCTCTTAC 58.633 50.000 0.00 0.00 34.37 2.34
4716 5829 2.099427 GGAGTTAGAGGTGGCTCTTACG 59.901 54.545 0.00 0.00 37.86 3.18
4717 5830 2.099427 GAGTTAGAGGTGGCTCTTACGG 59.901 54.545 0.00 0.00 37.86 4.02
4718 5831 1.136500 GTTAGAGGTGGCTCTTACGGG 59.864 57.143 0.00 0.00 35.09 5.28
4719 5832 1.041447 TAGAGGTGGCTCTTACGGGC 61.041 60.000 0.00 0.00 35.09 6.13
4720 5833 2.606519 AGGTGGCTCTTACGGGCA 60.607 61.111 0.00 0.00 36.92 5.36
4723 5836 2.345991 TGGCTCTTACGGGCACAC 59.654 61.111 0.00 0.00 34.37 3.82
4724 5837 2.813908 GGCTCTTACGGGCACACG 60.814 66.667 0.00 0.00 40.31 4.49
4726 5839 1.213537 GCTCTTACGGGCACACGTA 59.786 57.895 0.05 0.05 46.58 3.57
4733 5846 2.566952 ACGGGCACACGTACTAATAC 57.433 50.000 0.00 0.00 46.58 1.89
4734 5847 2.094675 ACGGGCACACGTACTAATACT 58.905 47.619 0.00 0.00 46.58 2.12
4735 5848 2.159338 ACGGGCACACGTACTAATACTG 60.159 50.000 0.00 0.00 46.58 2.74
4736 5849 2.199236 GGGCACACGTACTAATACTGC 58.801 52.381 0.00 0.00 32.07 4.40
4737 5850 2.417651 GGGCACACGTACTAATACTGCA 60.418 50.000 0.00 0.00 33.66 4.41
4738 5851 2.601763 GGCACACGTACTAATACTGCAC 59.398 50.000 0.00 0.00 33.66 4.57
4739 5852 2.601763 GCACACGTACTAATACTGCACC 59.398 50.000 0.00 0.00 32.75 5.01
4740 5853 3.840468 CACACGTACTAATACTGCACCA 58.160 45.455 0.00 0.00 0.00 4.17
4741 5854 4.239304 CACACGTACTAATACTGCACCAA 58.761 43.478 0.00 0.00 0.00 3.67
4742 5855 4.326278 CACACGTACTAATACTGCACCAAG 59.674 45.833 0.00 0.00 0.00 3.61
4743 5856 4.219070 ACACGTACTAATACTGCACCAAGA 59.781 41.667 0.00 0.00 0.00 3.02
4744 5857 4.561606 CACGTACTAATACTGCACCAAGAC 59.438 45.833 0.00 0.00 0.00 3.01
4745 5858 4.110482 CGTACTAATACTGCACCAAGACC 58.890 47.826 0.00 0.00 0.00 3.85
4746 5859 4.381185 CGTACTAATACTGCACCAAGACCA 60.381 45.833 0.00 0.00 0.00 4.02
4747 5860 4.634012 ACTAATACTGCACCAAGACCAA 57.366 40.909 0.00 0.00 0.00 3.67
4748 5861 4.980573 ACTAATACTGCACCAAGACCAAA 58.019 39.130 0.00 0.00 0.00 3.28
4749 5862 5.570320 ACTAATACTGCACCAAGACCAAAT 58.430 37.500 0.00 0.00 0.00 2.32
4750 5863 4.789012 AATACTGCACCAAGACCAAATG 57.211 40.909 0.00 0.00 0.00 2.32
4751 5864 1.331214 ACTGCACCAAGACCAAATGG 58.669 50.000 0.00 0.00 42.60 3.16
4770 5883 9.492973 CCAAATGGTTCTCAATGTCTTTTTATT 57.507 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 8.340230 AGTTTTAAGAAAGAAACAAGCAATCG 57.660 30.769 0.00 0.00 38.03 3.34
101 102 7.802738 TGTAGTACAAACAAATGTGCATCTAC 58.197 34.615 0.00 0.00 38.25 2.59
106 107 6.196079 TGTTGTAGTACAAACAAATGTGCA 57.804 33.333 17.16 5.35 40.15 4.57
137 138 9.476202 CCTAAAAATGGAACCTTAAACTTTCAG 57.524 33.333 0.00 0.00 0.00 3.02
181 182 1.192146 TAGACCCTGGACTGTGGTGC 61.192 60.000 0.00 0.00 30.97 5.01
296 297 7.697291 TCTTAACCATGTCGTGTAAAACAAAAC 59.303 33.333 0.00 0.00 0.00 2.43
364 378 1.284982 CGAGAGTGCGTCAAACCTGG 61.285 60.000 0.00 0.00 0.00 4.45
366 380 1.740285 ACGAGAGTGCGTCAAACCT 59.260 52.632 0.00 0.00 46.97 3.50
382 396 6.579865 ACTAATCCACTTTTATAGGGACACG 58.420 40.000 0.00 0.00 31.04 4.49
383 397 8.803397 AAACTAATCCACTTTTATAGGGACAC 57.197 34.615 0.00 0.00 31.04 3.67
384 398 9.816787 AAAAACTAATCCACTTTTATAGGGACA 57.183 29.630 0.00 0.00 31.04 4.02
405 419 1.725164 CGTCGCCTCCTACTGAAAAAC 59.275 52.381 0.00 0.00 0.00 2.43
414 428 0.524862 GACAAGAACGTCGCCTCCTA 59.475 55.000 0.00 0.00 0.00 2.94
452 466 6.016777 ACAGATGTTCAAGATTGACAAAGTCC 60.017 38.462 0.00 0.00 36.83 3.85
500 514 2.225255 CACACACAAACACACTGACACA 59.775 45.455 0.00 0.00 0.00 3.72
504 518 1.737236 GCTCACACACAAACACACTGA 59.263 47.619 0.00 0.00 0.00 3.41
505 519 1.529622 CGCTCACACACAAACACACTG 60.530 52.381 0.00 0.00 0.00 3.66
671 699 8.919145 TCCACAGTTACCAAAAATACAAAGAAT 58.081 29.630 0.00 0.00 0.00 2.40
793 826 2.360165 CCAATTAAGCCACTGATGAGCC 59.640 50.000 0.00 0.00 0.00 4.70
839 872 2.030274 GTGTGGGTAAAACCAGTCATGC 60.030 50.000 0.00 0.00 42.20 4.06
851 884 4.270834 TGCAAGTAAACAAGTGTGGGTAA 58.729 39.130 0.00 0.00 0.00 2.85
857 890 5.130350 AGTACCATGCAAGTAAACAAGTGT 58.870 37.500 0.00 0.00 0.00 3.55
912 946 2.375174 AGGTTCCATGAGTTGGCAGTAA 59.625 45.455 0.00 0.00 46.01 2.24
913 947 1.985159 AGGTTCCATGAGTTGGCAGTA 59.015 47.619 0.00 0.00 46.01 2.74
963 999 8.181904 AGTTTCATTATCCTCTTCTTTTTGCA 57.818 30.769 0.00 0.00 0.00 4.08
985 1021 1.869342 GCGCATTTGCAGTGGAAAGTT 60.869 47.619 15.33 0.00 42.21 2.66
1013 1049 2.618709 GCGCAGTTATTTATCCTGGCTT 59.381 45.455 0.30 0.00 0.00 4.35
1014 1050 2.158755 AGCGCAGTTATTTATCCTGGCT 60.159 45.455 11.47 0.00 31.95 4.75
1015 1051 2.031682 CAGCGCAGTTATTTATCCTGGC 60.032 50.000 11.47 0.00 0.00 4.85
1016 1052 3.206150 ACAGCGCAGTTATTTATCCTGG 58.794 45.455 11.47 0.00 0.00 4.45
1017 1053 4.591202 CAACAGCGCAGTTATTTATCCTG 58.409 43.478 18.27 0.00 0.00 3.86
1019 1055 3.363178 GCAACAGCGCAGTTATTTATCC 58.637 45.455 18.27 0.00 0.00 2.59
1020 1056 3.363178 GGCAACAGCGCAGTTATTTATC 58.637 45.455 18.27 3.79 0.00 1.75
1021 1057 2.099098 GGGCAACAGCGCAGTTATTTAT 59.901 45.455 18.27 0.00 40.56 1.40
1022 1058 1.470890 GGGCAACAGCGCAGTTATTTA 59.529 47.619 18.27 0.00 40.56 1.40
1023 1059 0.243636 GGGCAACAGCGCAGTTATTT 59.756 50.000 18.27 0.00 40.56 1.40
1126 1162 4.684877 GGCTGAAAGGTTCTACTAGTAGC 58.315 47.826 22.87 11.10 33.32 3.58
1130 1166 2.738964 GCCGGCTGAAAGGTTCTACTAG 60.739 54.545 22.15 0.00 0.00 2.57
1131 1167 1.206371 GCCGGCTGAAAGGTTCTACTA 59.794 52.381 22.15 0.00 0.00 1.82
1132 1168 0.036294 GCCGGCTGAAAGGTTCTACT 60.036 55.000 22.15 0.00 0.00 2.57
1188 1224 4.096003 ACGTGAGAATGGCGGGGG 62.096 66.667 0.00 0.00 0.00 5.40
1217 1256 0.621082 GTGAAAAGGGAGGAGGAGGG 59.379 60.000 0.00 0.00 0.00 4.30
1240 1279 2.151202 GATTGCCTGACGAACCTTGAA 58.849 47.619 0.00 0.00 0.00 2.69
1269 1308 2.683933 TCCAGCGGAGGAAGGTCC 60.684 66.667 0.00 0.00 33.93 4.46
1335 1374 4.451652 GGGGACGACGACGACGAC 62.452 72.222 25.15 18.64 42.66 4.34
1503 1542 2.121538 TCAGAGACGGCGGAGGATG 61.122 63.158 13.24 3.32 0.00 3.51
1525 1567 0.519077 CAAGAAGAAGCAAGCCGGTC 59.481 55.000 1.90 0.00 0.00 4.79
1586 1637 3.375299 GCTGAAGAGCGACCAACATAAAT 59.625 43.478 0.00 0.00 34.87 1.40
1590 1641 2.846371 GCTGAAGAGCGACCAACAT 58.154 52.632 0.00 0.00 34.87 2.71
1791 1860 4.524053 TGCAGAGCAGATGATTCTTGATT 58.476 39.130 0.00 0.00 33.32 2.57
1815 1884 8.266473 ACTAGCTAGTAAGAGACTACTGCTAAA 58.734 37.037 24.97 0.00 37.67 1.85
1818 1887 6.243216 ACTAGCTAGTAAGAGACTACTGCT 57.757 41.667 24.97 0.00 39.81 4.24
1819 1888 5.467735 GGACTAGCTAGTAAGAGACTACTGC 59.532 48.000 26.11 8.87 39.81 4.40
1820 1889 5.993441 GGGACTAGCTAGTAAGAGACTACTG 59.007 48.000 26.11 0.00 39.81 2.74
1850 1920 7.892609 TGAGCTCTCTACACAAATGTTAAGTA 58.107 34.615 16.19 0.00 40.48 2.24
1872 1942 2.262774 AAATGGCGGGAGAGGCTGAG 62.263 60.000 0.00 0.00 37.59 3.35
1898 1968 2.119801 ATCAAAGCTCGGTTCAGCAT 57.880 45.000 0.00 0.00 42.40 3.79
1920 1992 2.443958 TGGTTGGTTGGTTCACATGA 57.556 45.000 0.00 0.00 0.00 3.07
2170 2246 2.046217 GAGACGGGTGAAAGGGGC 60.046 66.667 0.00 0.00 0.00 5.80
2195 2271 0.527817 CGAGCTTAGCTACCAACCGG 60.528 60.000 6.75 0.00 39.88 5.28
2210 2286 1.391826 CGAGCTCTTTTCTTTCCGAGC 59.608 52.381 12.85 0.00 46.89 5.03
2211 2287 2.920490 CTCGAGCTCTTTTCTTTCCGAG 59.080 50.000 12.85 5.96 36.74 4.63
2212 2288 2.352814 CCTCGAGCTCTTTTCTTTCCGA 60.353 50.000 12.85 0.00 0.00 4.55
2213 2289 1.996191 CCTCGAGCTCTTTTCTTTCCG 59.004 52.381 12.85 0.00 0.00 4.30
2275 2800 1.272807 TAACCAAACGAGGGAGGGAG 58.727 55.000 0.00 0.00 0.00 4.30
2281 2806 1.470051 CCCCATTAACCAAACGAGGG 58.530 55.000 0.00 0.00 34.58 4.30
2321 2846 4.301027 GGATCGCCGGGCAGTAGG 62.301 72.222 20.71 1.74 0.00 3.18
2322 2847 2.872388 ATGGATCGCCGGGCAGTAG 61.872 63.158 20.71 2.16 36.79 2.57
2323 2848 2.842462 ATGGATCGCCGGGCAGTA 60.842 61.111 20.71 3.81 36.79 2.74
2377 2907 1.799121 GTACGTCGCCAGTCGGTTC 60.799 63.158 0.00 0.00 39.05 3.62
2407 2938 2.677003 CGGCCACTTACAGGTTGCG 61.677 63.158 2.24 0.00 0.00 4.85
2409 2940 0.035439 ATCCGGCCACTTACAGGTTG 60.035 55.000 2.24 0.00 0.00 3.77
2497 3070 3.060020 GATCTCGTTGTCCGGCCGA 62.060 63.158 30.73 10.38 37.11 5.54
2502 3075 6.129168 CGATTAATTAAGGATCTCGTTGTCCG 60.129 42.308 3.94 0.00 39.54 4.79
2506 3079 7.345192 CAACCGATTAATTAAGGATCTCGTTG 58.655 38.462 13.97 13.43 0.00 4.10
2516 3089 5.811399 TCACCAGCAACCGATTAATTAAG 57.189 39.130 3.94 0.00 0.00 1.85
2526 3099 1.799181 CGTAGAGATCACCAGCAACCG 60.799 57.143 0.00 0.00 0.00 4.44
2527 3100 1.471676 CCGTAGAGATCACCAGCAACC 60.472 57.143 0.00 0.00 0.00 3.77
2529 3105 0.824109 CCCGTAGAGATCACCAGCAA 59.176 55.000 0.00 0.00 0.00 3.91
2546 3122 3.131755 AGCAAACGTACTACCTACATCCC 59.868 47.826 0.00 0.00 0.00 3.85
2547 3123 4.110482 CAGCAAACGTACTACCTACATCC 58.890 47.826 0.00 0.00 0.00 3.51
2554 3130 2.222445 CCAACACAGCAAACGTACTACC 59.778 50.000 0.00 0.00 0.00 3.18
2555 3131 2.867975 ACCAACACAGCAAACGTACTAC 59.132 45.455 0.00 0.00 0.00 2.73
2556 3132 3.125316 GACCAACACAGCAAACGTACTA 58.875 45.455 0.00 0.00 0.00 1.82
2619 3196 4.435651 GCGTCTAATCAGCAAAGTGGTAAC 60.436 45.833 0.00 0.00 0.00 2.50
2620 3197 3.682858 GCGTCTAATCAGCAAAGTGGTAA 59.317 43.478 0.00 0.00 0.00 2.85
2631 3208 2.030213 GCTCTTGCTTGCGTCTAATCAG 59.970 50.000 0.00 0.00 36.03 2.90
2884 3476 1.762957 CAGTAATGGAGGTGGTCGGAT 59.237 52.381 0.00 0.00 0.00 4.18
2887 3479 2.007049 GCACAGTAATGGAGGTGGTCG 61.007 57.143 0.00 0.00 0.00 4.79
2907 3503 4.690719 TACGGCCGGCCAACACTG 62.691 66.667 42.78 28.12 35.37 3.66
2951 3560 3.067480 GCATTGCATGGTGACCGGG 62.067 63.158 6.32 0.00 0.00 5.73
2958 3567 2.835317 TACCCGCTGCATTGCATGGT 62.835 55.000 23.00 23.00 38.13 3.55
3006 3615 0.596577 TCCGACTTCACCGAGAACAG 59.403 55.000 0.00 0.00 31.61 3.16
3133 3760 7.179269 ACCAGTAGAGTTCTTGAGAGACTATT 58.821 38.462 0.00 0.00 0.00 1.73
3135 3762 6.129414 ACCAGTAGAGTTCTTGAGAGACTA 57.871 41.667 0.00 0.00 0.00 2.59
3154 3781 6.162079 CAGTAGATAATGGCAGTGATACCAG 58.838 44.000 0.00 0.00 39.88 4.00
3165 3803 6.017852 GCTGAAACTTACCAGTAGATAATGGC 60.018 42.308 6.26 0.00 44.79 4.40
3371 4011 0.810426 CGCTGATGAGCATGAGCAGT 60.810 55.000 19.19 0.00 46.28 4.40
3555 4195 2.159366 TGTACACAACAACAAAAGGGCG 60.159 45.455 0.00 0.00 34.29 6.13
3657 4297 4.012895 ACGAAGCTTTGTGCCGCG 62.013 61.111 18.81 9.14 44.23 6.46
3680 4321 1.177401 TGGATCTCACTCTGTCACCG 58.823 55.000 0.00 0.00 0.00 4.94
3688 4329 2.540265 ATTCGCCATGGATCTCACTC 57.460 50.000 18.40 0.00 0.00 3.51
3710 4351 4.864704 AAACAACCCAATCATGTGTACC 57.135 40.909 0.00 0.00 0.00 3.34
3725 4366 6.926826 AGGAATTAATCAACGGGAAAAACAAC 59.073 34.615 0.00 0.00 0.00 3.32
3726 4367 6.926272 CAGGAATTAATCAACGGGAAAAACAA 59.074 34.615 0.00 0.00 0.00 2.83
3727 4368 6.041069 ACAGGAATTAATCAACGGGAAAAACA 59.959 34.615 0.00 0.00 0.00 2.83
3728 4369 6.364976 CACAGGAATTAATCAACGGGAAAAAC 59.635 38.462 0.00 0.00 0.00 2.43
3751 4392 5.961272 TGGGTTCTTTTCTTTTCTTGACAC 58.039 37.500 0.00 0.00 0.00 3.67
3772 4413 5.649782 AAGAACTGTTTCTATGCCAATGG 57.350 39.130 0.00 0.00 41.56 3.16
3798 4439 4.039124 GGAAAATGCTCAAAACAGAAGGGA 59.961 41.667 0.00 0.00 0.00 4.20
3799 4440 4.309933 GGAAAATGCTCAAAACAGAAGGG 58.690 43.478 0.00 0.00 0.00 3.95
3850 4491 0.474184 CTGGACACCAAACCCTGAGT 59.526 55.000 0.00 0.00 30.80 3.41
3851 4492 0.764890 TCTGGACACCAAACCCTGAG 59.235 55.000 0.00 0.00 30.80 3.35
3894 4535 1.534595 CCACACTGCAACACTTTCAGC 60.535 52.381 0.00 0.00 0.00 4.26
3941 4582 2.825836 CAGCTGGGTCAATCGCCC 60.826 66.667 5.57 0.00 46.26 6.13
3955 4596 1.448717 GTCGCTCCTCTTTCCCAGC 60.449 63.158 0.00 0.00 0.00 4.85
3969 4610 1.877165 GGGAATCTCGTTCGGTCGC 60.877 63.158 0.00 0.00 37.73 5.19
4021 4714 4.315803 GCACAGCAAGTCTTAAAGTCCTA 58.684 43.478 0.00 0.00 0.00 2.94
4023 4716 2.226674 GGCACAGCAAGTCTTAAAGTCC 59.773 50.000 0.00 0.00 0.00 3.85
4097 4790 4.385825 ACAAAGCGTTGGTCTGAATCTAA 58.614 39.130 16.80 0.00 39.22 2.10
4124 4819 1.228124 CAAGGCCCACGAAACCTGA 60.228 57.895 0.00 0.00 32.92 3.86
4137 4832 0.529378 CCATTTCTCCAGCACAAGGC 59.471 55.000 0.00 0.00 45.30 4.35
4139 4834 0.529378 GCCCATTTCTCCAGCACAAG 59.471 55.000 0.00 0.00 0.00 3.16
4146 4841 0.114954 AGCCAAAGCCCATTTCTCCA 59.885 50.000 0.00 0.00 41.25 3.86
4254 4949 2.045340 CCACCAAGGTTAGCCCCG 60.045 66.667 0.00 0.00 34.57 5.73
4279 5392 1.605753 AAGGCGGTCTTTTTGGACTC 58.394 50.000 0.00 0.00 36.55 3.36
4289 5402 2.532843 TCTTACCAACTAAGGCGGTCT 58.467 47.619 0.00 0.00 33.68 3.85
4300 5413 4.766375 TCGAATTCCTGGATCTTACCAAC 58.234 43.478 0.00 0.00 39.59 3.77
4312 5425 6.414079 CATCGTCTAACAAATCGAATTCCTG 58.586 40.000 0.00 0.00 35.99 3.86
4332 5445 0.884704 CGGATAACCCAAGGCCATCG 60.885 60.000 5.01 0.00 34.14 3.84
4337 5450 1.526225 GCCTCGGATAACCCAAGGC 60.526 63.158 12.59 12.59 46.81 4.35
4391 5504 0.168788 ACAGCGCATGATGAAAACCG 59.831 50.000 11.47 0.00 34.93 4.44
4392 5505 1.199789 TCACAGCGCATGATGAAAACC 59.800 47.619 11.47 0.00 34.93 3.27
4393 5506 2.617250 TCACAGCGCATGATGAAAAC 57.383 45.000 11.47 0.00 34.93 2.43
4403 5516 3.796717 CGAGTATATTTCTTCACAGCGCA 59.203 43.478 11.47 0.00 0.00 6.09
4406 5519 4.318404 GCTGCGAGTATATTTCTTCACAGC 60.318 45.833 0.00 0.00 39.85 4.40
4408 5521 4.754322 TGCTGCGAGTATATTTCTTCACA 58.246 39.130 0.00 0.00 0.00 3.58
4415 5528 4.960938 TCCTCAATGCTGCGAGTATATTT 58.039 39.130 0.00 0.00 0.00 1.40
4419 5532 2.289320 GGATCCTCAATGCTGCGAGTAT 60.289 50.000 3.84 0.00 0.00 2.12
4420 5533 1.069204 GGATCCTCAATGCTGCGAGTA 59.931 52.381 3.84 0.00 0.00 2.59
4422 5535 0.883814 GGGATCCTCAATGCTGCGAG 60.884 60.000 12.58 0.00 0.00 5.03
4424 5537 0.749091 TTGGGATCCTCAATGCTGCG 60.749 55.000 12.58 0.00 0.00 5.18
4427 5540 3.094572 CAAGTTTGGGATCCTCAATGCT 58.905 45.455 12.58 11.73 0.00 3.79
4430 5543 4.713321 CCATTCAAGTTTGGGATCCTCAAT 59.287 41.667 12.58 0.00 0.00 2.57
4431 5544 4.088634 CCATTCAAGTTTGGGATCCTCAA 58.911 43.478 12.58 11.38 0.00 3.02
4432 5545 3.700538 CCATTCAAGTTTGGGATCCTCA 58.299 45.455 12.58 5.20 0.00 3.86
4449 5562 2.059756 TGAGGTCTCCCTTTCCCATT 57.940 50.000 0.00 0.00 42.86 3.16
4452 5565 2.172930 GGTATTGAGGTCTCCCTTTCCC 59.827 54.545 0.00 0.00 42.86 3.97
4454 5567 2.742204 GCGGTATTGAGGTCTCCCTTTC 60.742 54.545 0.00 0.00 42.86 2.62
4460 5573 1.674962 AGTACGCGGTATTGAGGTCTC 59.325 52.381 12.47 0.00 0.00 3.36
4468 5581 1.066716 TGCCTGAAAGTACGCGGTATT 60.067 47.619 12.47 0.00 0.00 1.89
4475 5588 3.996825 GCCATTGCCTGAAAGTACG 57.003 52.632 0.00 0.00 0.00 3.67
4497 5610 1.060937 GCATCTTGTACGCTTGCCG 59.939 57.895 0.00 0.00 44.21 5.69
4498 5611 0.097674 CTGCATCTTGTACGCTTGCC 59.902 55.000 0.00 0.00 32.39 4.52
4499 5612 0.798776 ACTGCATCTTGTACGCTTGC 59.201 50.000 0.00 3.71 0.00 4.01
4500 5613 3.060940 CGATACTGCATCTTGTACGCTTG 60.061 47.826 0.00 0.00 0.00 4.01
4501 5614 3.116300 CGATACTGCATCTTGTACGCTT 58.884 45.455 0.00 0.00 0.00 4.68
4502 5615 2.099263 ACGATACTGCATCTTGTACGCT 59.901 45.455 0.00 0.00 0.00 5.07
4503 5616 2.460918 ACGATACTGCATCTTGTACGC 58.539 47.619 0.00 0.00 0.00 4.42
4504 5617 3.301835 GCAACGATACTGCATCTTGTACG 60.302 47.826 0.00 0.00 39.69 3.67
4505 5618 3.301835 CGCAACGATACTGCATCTTGTAC 60.302 47.826 0.00 0.00 39.91 2.90
4506 5619 2.857748 CGCAACGATACTGCATCTTGTA 59.142 45.455 0.00 0.00 39.91 2.41
4507 5620 1.660607 CGCAACGATACTGCATCTTGT 59.339 47.619 0.00 0.00 39.91 3.16
4508 5621 1.593070 GCGCAACGATACTGCATCTTG 60.593 52.381 0.30 0.00 39.91 3.02
4509 5622 0.652592 GCGCAACGATACTGCATCTT 59.347 50.000 0.30 0.00 39.91 2.40
4510 5623 0.179100 AGCGCAACGATACTGCATCT 60.179 50.000 11.47 0.00 39.91 2.90
4511 5624 0.652592 AAGCGCAACGATACTGCATC 59.347 50.000 11.47 0.00 39.91 3.91
4512 5625 1.860950 CTAAGCGCAACGATACTGCAT 59.139 47.619 11.47 0.00 39.91 3.96
4518 5631 1.270094 CCATCCCTAAGCGCAACGATA 60.270 52.381 11.47 0.00 0.00 2.92
4549 5662 3.991773 TGTAACGCCTCATGTTCAGTAAC 59.008 43.478 0.00 0.00 36.07 2.50
4551 5664 3.945981 TGTAACGCCTCATGTTCAGTA 57.054 42.857 0.00 0.00 0.00 2.74
4566 5679 6.267496 AGGAATACATGTGCCTTTTGTAAC 57.733 37.500 9.11 0.00 30.29 2.50
4569 5682 5.806654 AAAGGAATACATGTGCCTTTTGT 57.193 34.783 24.66 12.13 45.71 2.83
4640 5753 2.330924 GATGGCACTAGCAGACCCCC 62.331 65.000 0.00 0.00 44.61 5.40
4641 5754 1.147153 GATGGCACTAGCAGACCCC 59.853 63.158 0.00 0.00 44.61 4.95
4642 5755 1.227380 CGATGGCACTAGCAGACCC 60.227 63.158 0.00 0.00 44.61 4.46
4643 5756 0.175760 TTCGATGGCACTAGCAGACC 59.824 55.000 0.00 0.00 44.61 3.85
4644 5757 2.010145 TTTCGATGGCACTAGCAGAC 57.990 50.000 0.00 0.00 44.61 3.51
4645 5758 2.760634 TTTTCGATGGCACTAGCAGA 57.239 45.000 0.00 0.00 44.61 4.26
4646 5759 2.938451 TCATTTTCGATGGCACTAGCAG 59.062 45.455 0.00 0.00 44.61 4.24
4647 5760 2.984562 TCATTTTCGATGGCACTAGCA 58.015 42.857 0.00 0.00 44.61 3.49
4648 5761 4.511454 TGTATCATTTTCGATGGCACTAGC 59.489 41.667 0.00 0.00 41.10 3.42
4649 5762 6.791887 ATGTATCATTTTCGATGGCACTAG 57.208 37.500 0.00 0.00 0.00 2.57
4650 5763 8.556194 GTTAATGTATCATTTTCGATGGCACTA 58.444 33.333 0.00 0.00 0.00 2.74
4651 5764 7.283127 AGTTAATGTATCATTTTCGATGGCACT 59.717 33.333 0.00 0.00 0.00 4.40
4652 5765 7.376866 CAGTTAATGTATCATTTTCGATGGCAC 59.623 37.037 0.00 0.00 0.00 5.01
4653 5766 7.416817 CAGTTAATGTATCATTTTCGATGGCA 58.583 34.615 0.00 0.00 0.00 4.92
4654 5767 6.360681 GCAGTTAATGTATCATTTTCGATGGC 59.639 38.462 0.37 0.00 0.00 4.40
4655 5768 6.857964 GGCAGTTAATGTATCATTTTCGATGG 59.142 38.462 0.37 0.00 0.00 3.51
4656 5769 6.857964 GGGCAGTTAATGTATCATTTTCGATG 59.142 38.462 0.37 0.00 0.00 3.84
4657 5770 6.016276 GGGGCAGTTAATGTATCATTTTCGAT 60.016 38.462 0.37 0.00 0.00 3.59
4658 5771 5.298276 GGGGCAGTTAATGTATCATTTTCGA 59.702 40.000 0.37 0.00 0.00 3.71
4659 5772 5.299279 AGGGGCAGTTAATGTATCATTTTCG 59.701 40.000 0.37 0.00 0.00 3.46
4660 5773 6.715347 AGGGGCAGTTAATGTATCATTTTC 57.285 37.500 0.37 0.00 0.00 2.29
4661 5774 7.038373 ACAAAGGGGCAGTTAATGTATCATTTT 60.038 33.333 0.37 0.00 0.00 1.82
4662 5775 6.440328 ACAAAGGGGCAGTTAATGTATCATTT 59.560 34.615 0.37 0.00 0.00 2.32
4663 5776 5.957774 ACAAAGGGGCAGTTAATGTATCATT 59.042 36.000 0.80 0.80 0.00 2.57
4664 5777 5.518865 ACAAAGGGGCAGTTAATGTATCAT 58.481 37.500 0.00 0.00 0.00 2.45
4665 5778 4.929479 ACAAAGGGGCAGTTAATGTATCA 58.071 39.130 0.00 0.00 0.00 2.15
4666 5779 5.394115 CCAACAAAGGGGCAGTTAATGTATC 60.394 44.000 0.00 0.00 0.00 2.24
4667 5780 4.466015 CCAACAAAGGGGCAGTTAATGTAT 59.534 41.667 0.00 0.00 0.00 2.29
4668 5781 3.829601 CCAACAAAGGGGCAGTTAATGTA 59.170 43.478 0.00 0.00 0.00 2.29
4669 5782 2.632512 CCAACAAAGGGGCAGTTAATGT 59.367 45.455 0.00 0.00 0.00 2.71
4670 5783 3.317603 CCAACAAAGGGGCAGTTAATG 57.682 47.619 0.00 0.00 0.00 1.90
4679 5792 1.152355 TCCTTGGCCAACAAAGGGG 60.152 57.895 16.05 13.64 38.91 4.79
4680 5793 0.469892 ACTCCTTGGCCAACAAAGGG 60.470 55.000 16.05 14.44 38.91 3.95
4681 5794 1.413118 AACTCCTTGGCCAACAAAGG 58.587 50.000 16.05 15.00 38.91 3.11
4682 5795 3.486383 TCTAACTCCTTGGCCAACAAAG 58.514 45.455 16.05 14.18 38.91 2.77
4683 5796 3.486383 CTCTAACTCCTTGGCCAACAAA 58.514 45.455 16.05 1.49 38.91 2.83
4684 5797 2.224769 CCTCTAACTCCTTGGCCAACAA 60.225 50.000 16.05 4.31 37.55 2.83
4685 5798 1.351017 CCTCTAACTCCTTGGCCAACA 59.649 52.381 16.05 2.77 0.00 3.33
4686 5799 1.351350 ACCTCTAACTCCTTGGCCAAC 59.649 52.381 16.05 0.00 0.00 3.77
4687 5800 1.351017 CACCTCTAACTCCTTGGCCAA 59.649 52.381 19.25 19.25 0.00 4.52
4688 5801 0.984230 CACCTCTAACTCCTTGGCCA 59.016 55.000 0.00 0.00 0.00 5.36
4689 5802 0.253327 CCACCTCTAACTCCTTGGCC 59.747 60.000 0.00 0.00 0.00 5.36
4690 5803 0.393132 GCCACCTCTAACTCCTTGGC 60.393 60.000 0.00 0.00 42.57 4.52
4691 5804 1.208293 GAGCCACCTCTAACTCCTTGG 59.792 57.143 0.00 0.00 35.16 3.61
4692 5805 2.183679 AGAGCCACCTCTAACTCCTTG 58.816 52.381 0.00 0.00 46.45 3.61
4693 5806 2.632763 AGAGCCACCTCTAACTCCTT 57.367 50.000 0.00 0.00 46.45 3.36
4702 5815 2.187163 GCCCGTAAGAGCCACCTC 59.813 66.667 0.00 0.00 43.02 3.85
4703 5816 2.606519 TGCCCGTAAGAGCCACCT 60.607 61.111 0.00 0.00 43.02 4.00
4704 5817 2.436115 GTGCCCGTAAGAGCCACC 60.436 66.667 0.00 0.00 43.02 4.61
4705 5818 2.033194 GTGTGCCCGTAAGAGCCAC 61.033 63.158 0.00 0.00 43.02 5.01
4706 5819 2.345991 GTGTGCCCGTAAGAGCCA 59.654 61.111 0.00 0.00 43.02 4.75
4707 5820 2.216750 TACGTGTGCCCGTAAGAGCC 62.217 60.000 0.00 0.00 40.11 4.70
4708 5821 1.074872 GTACGTGTGCCCGTAAGAGC 61.075 60.000 0.00 0.00 44.13 4.09
4709 5822 0.524862 AGTACGTGTGCCCGTAAGAG 59.475 55.000 0.00 0.00 44.13 2.85
4710 5823 1.819928 TAGTACGTGTGCCCGTAAGA 58.180 50.000 0.00 0.00 44.13 2.10
4711 5824 2.634982 TTAGTACGTGTGCCCGTAAG 57.365 50.000 0.00 0.00 44.13 2.34
4712 5825 3.694072 AGTATTAGTACGTGTGCCCGTAA 59.306 43.478 0.00 0.00 44.13 3.18
4713 5826 3.065233 CAGTATTAGTACGTGTGCCCGTA 59.935 47.826 0.00 0.00 42.00 4.02
4714 5827 2.094675 AGTATTAGTACGTGTGCCCGT 58.905 47.619 0.00 0.00 44.50 5.28
4715 5828 2.456989 CAGTATTAGTACGTGTGCCCG 58.543 52.381 0.00 0.00 35.92 6.13
4716 5829 2.199236 GCAGTATTAGTACGTGTGCCC 58.801 52.381 0.00 0.00 35.92 5.36
4717 5830 2.601763 GTGCAGTATTAGTACGTGTGCC 59.398 50.000 0.00 0.00 35.92 5.01
4718 5831 2.601763 GGTGCAGTATTAGTACGTGTGC 59.398 50.000 0.00 2.35 35.92 4.57
4719 5832 3.840468 TGGTGCAGTATTAGTACGTGTG 58.160 45.455 0.00 0.00 35.92 3.82
4720 5833 4.219070 TCTTGGTGCAGTATTAGTACGTGT 59.781 41.667 0.00 0.00 35.92 4.49
4721 5834 4.561606 GTCTTGGTGCAGTATTAGTACGTG 59.438 45.833 0.00 0.00 35.92 4.49
4722 5835 4.381292 GGTCTTGGTGCAGTATTAGTACGT 60.381 45.833 0.00 0.00 35.92 3.57
4723 5836 4.110482 GGTCTTGGTGCAGTATTAGTACG 58.890 47.826 0.00 0.00 35.92 3.67
4724 5837 5.080969 TGGTCTTGGTGCAGTATTAGTAC 57.919 43.478 0.00 0.00 0.00 2.73
4725 5838 5.748670 TTGGTCTTGGTGCAGTATTAGTA 57.251 39.130 0.00 0.00 0.00 1.82
4726 5839 4.634012 TTGGTCTTGGTGCAGTATTAGT 57.366 40.909 0.00 0.00 0.00 2.24
4727 5840 5.163622 CCATTTGGTCTTGGTGCAGTATTAG 60.164 44.000 0.00 0.00 0.00 1.73
4728 5841 4.704540 CCATTTGGTCTTGGTGCAGTATTA 59.295 41.667 0.00 0.00 0.00 0.98
4729 5842 3.511146 CCATTTGGTCTTGGTGCAGTATT 59.489 43.478 0.00 0.00 0.00 1.89
4730 5843 3.091545 CCATTTGGTCTTGGTGCAGTAT 58.908 45.455 0.00 0.00 0.00 2.12
4731 5844 2.513753 CCATTTGGTCTTGGTGCAGTA 58.486 47.619 0.00 0.00 0.00 2.74
4732 5845 1.331214 CCATTTGGTCTTGGTGCAGT 58.669 50.000 0.00 0.00 0.00 4.40
4744 5857 9.492973 AATAAAAAGACATTGAGAACCATTTGG 57.507 29.630 0.00 0.00 42.17 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.