Multiple sequence alignment - TraesCS7A01G229300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G229300 chr7A 100.000 5283 0 0 1 5283 199442958 199437676 0.000000e+00 9756.0
1 TraesCS7A01G229300 chr7A 87.524 529 60 4 679 1202 331175233 331175760 1.630000e-169 606.0
2 TraesCS7A01G229300 chr7A 90.000 410 34 7 4783 5188 95108407 95108001 1.690000e-144 523.0
3 TraesCS7A01G229300 chrUn 96.251 1894 52 11 1252 3141 295946079 295944201 0.000000e+00 3086.0
4 TraesCS7A01G229300 chrUn 94.538 1959 72 15 3236 5186 48343682 48341751 0.000000e+00 2992.0
5 TraesCS7A01G229300 chrUn 91.674 1213 77 14 1 1206 70721429 70722624 0.000000e+00 1659.0
6 TraesCS7A01G229300 chrUn 96.355 631 18 4 2336 2962 265947903 265948532 0.000000e+00 1033.0
7 TraesCS7A01G229300 chrUn 96.038 631 20 4 2336 2962 324062704 324062075 0.000000e+00 1022.0
8 TraesCS7A01G229300 chrUn 98.374 123 2 0 3054 3176 418757663 418757541 3.200000e-52 217.0
9 TraesCS7A01G229300 chr4A 96.205 1897 53 11 1249 3141 611287376 611289257 0.000000e+00 3086.0
10 TraesCS7A01G229300 chr4A 93.598 1687 78 9 3063 4740 516031467 516029802 0.000000e+00 2490.0
11 TraesCS7A01G229300 chr4A 93.440 1311 55 11 3441 4740 516078472 516077182 0.000000e+00 1916.0
12 TraesCS7A01G229300 chr4A 90.211 664 46 12 1 655 139723185 139723838 0.000000e+00 848.0
13 TraesCS7A01G229300 chr4A 94.408 304 16 1 3063 3366 516078767 516078465 2.880000e-127 466.0
14 TraesCS7A01G229300 chr4A 93.796 274 15 2 2122 2394 712914549 712914821 1.370000e-110 411.0
15 TraesCS7A01G229300 chr4B 94.068 1770 78 14 2989 4740 597426704 597424944 0.000000e+00 2662.0
16 TraesCS7A01G229300 chr4B 88.483 1094 81 21 3669 4740 669669703 669668633 0.000000e+00 1280.0
17 TraesCS7A01G229300 chr4B 88.901 919 76 15 4292 5188 604278318 604279232 0.000000e+00 1109.0
18 TraesCS7A01G229300 chr4B 95.018 542 23 3 3201 3742 604965976 604966513 0.000000e+00 848.0
19 TraesCS7A01G229300 chr4B 81.972 710 83 32 1 681 291452325 291451632 1.280000e-155 560.0
20 TraesCS7A01G229300 chr4B 98.374 123 2 0 3054 3176 180293607 180293729 3.200000e-52 217.0
21 TraesCS7A01G229300 chr4B 97.980 99 2 0 2397 2495 597430729 597430631 7.030000e-39 172.0
22 TraesCS7A01G229300 chr4B 100.000 69 0 0 2484 2552 180293540 180293608 1.540000e-25 128.0
23 TraesCS7A01G229300 chr3A 93.913 1692 68 11 3063 4740 30943024 30944694 0.000000e+00 2521.0
24 TraesCS7A01G229300 chr3A 95.995 874 33 2 2122 2994 689755774 689754902 0.000000e+00 1419.0
25 TraesCS7A01G229300 chr3A 88.854 942 67 18 1194 2131 577564397 577563490 0.000000e+00 1123.0
26 TraesCS7A01G229300 chr3A 90.738 691 45 11 1 681 21305117 21305798 0.000000e+00 904.0
27 TraesCS7A01G229300 chr3A 89.487 409 37 6 4783 5188 689753111 689752706 3.650000e-141 512.0
28 TraesCS7A01G229300 chr3A 90.654 214 14 4 1904 2117 591692663 591692456 4.030000e-71 279.0
29 TraesCS7A01G229300 chr3A 77.682 233 26 12 3325 3537 61629832 61630058 9.290000e-23 119.0
30 TraesCS7A01G229300 chr1D 90.826 1210 76 11 1 1202 16465740 16466922 0.000000e+00 1587.0
31 TraesCS7A01G229300 chr1D 92.784 97 5 1 5188 5282 118650495 118650399 7.130000e-29 139.0
32 TraesCS7A01G229300 chr1D 85.714 77 3 3 5215 5283 213951363 213951287 2.040000e-09 75.0
33 TraesCS7A01G229300 chr2D 90.083 1200 71 24 10 1202 10055047 10056205 0.000000e+00 1513.0
34 TraesCS7A01G229300 chr2D 90.832 1058 75 10 3201 4239 279105338 279104284 0.000000e+00 1397.0
35 TraesCS7A01G229300 chr2D 94.768 669 20 5 3626 4286 408776606 408777267 0.000000e+00 1027.0
36 TraesCS7A01G229300 chr2D 89.905 525 29 10 679 1202 586828255 586828756 0.000000e+00 654.0
37 TraesCS7A01G229300 chr2D 83.690 607 69 20 86 681 229309793 229310380 3.600000e-151 545.0
38 TraesCS7A01G229300 chr2D 85.014 347 29 5 3328 3653 241364260 241363916 1.100000e-86 331.0
39 TraesCS7A01G229300 chr2D 90.610 213 19 1 990 1202 648846457 648846668 1.120000e-71 281.0
40 TraesCS7A01G229300 chr2D 92.857 168 11 1 680 846 100864600 100864433 5.290000e-60 243.0
41 TraesCS7A01G229300 chr2D 94.964 139 6 1 3063 3201 279105849 279105712 3.200000e-52 217.0
42 TraesCS7A01G229300 chr2A 95.652 874 34 3 2122 2994 269269569 269268699 0.000000e+00 1400.0
43 TraesCS7A01G229300 chr2A 95.652 874 34 3 2122 2994 269307343 269306473 0.000000e+00 1400.0
44 TraesCS7A01G229300 chr2A 89.677 804 63 8 3455 4239 349697156 349697958 0.000000e+00 1007.0
45 TraesCS7A01G229300 chr2A 94.572 608 17 7 3626 4225 606696966 606696367 0.000000e+00 926.0
46 TraesCS7A01G229300 chr2A 91.441 666 47 7 1 656 27053997 27054662 0.000000e+00 905.0
47 TraesCS7A01G229300 chr2A 89.706 408 36 6 4783 5187 269304681 269304277 2.820000e-142 516.0
48 TraesCS7A01G229300 chr2A 89.435 407 39 4 4783 5187 269266908 269266504 1.310000e-140 510.0
49 TraesCS7A01G229300 chr2A 91.506 259 20 2 3201 3459 349687447 349687703 6.510000e-94 355.0
50 TraesCS7A01G229300 chr2A 87.170 265 17 6 3963 4219 5157818 5158073 8.660000e-73 285.0
51 TraesCS7A01G229300 chr3B 90.719 959 38 22 1194 2131 574682497 574681569 0.000000e+00 1230.0
52 TraesCS7A01G229300 chr3B 90.278 72 5 1 5214 5283 188090271 188090200 5.630000e-15 93.5
53 TraesCS7A01G229300 chr3D 89.634 955 50 26 1194 2117 438609060 438608124 0.000000e+00 1170.0
54 TraesCS7A01G229300 chr3D 87.826 920 70 24 4292 5188 30775178 30776078 0.000000e+00 1040.0
55 TraesCS7A01G229300 chr3D 92.687 629 22 6 3666 4286 570948174 570948786 0.000000e+00 885.0
56 TraesCS7A01G229300 chr6A 91.415 862 45 9 3900 4740 576843260 576842407 0.000000e+00 1155.0
57 TraesCS7A01G229300 chr6A 90.247 687 45 16 1 681 9593178 9593848 0.000000e+00 878.0
58 TraesCS7A01G229300 chr6A 88.841 233 15 7 1904 2131 165817062 165817288 5.210000e-70 276.0
59 TraesCS7A01G229300 chr5A 90.909 693 45 11 1 681 21831036 21831722 0.000000e+00 915.0
60 TraesCS7A01G229300 chr5A 96.354 384 13 1 2546 2929 698099191 698098809 9.660000e-177 630.0
61 TraesCS7A01G229300 chr5A 96.386 166 4 2 3200 3365 422095261 422095424 6.740000e-69 272.0
62 TraesCS7A01G229300 chr5B 91.416 664 46 6 1 655 291648970 291648309 0.000000e+00 900.0
63 TraesCS7A01G229300 chr5B 80.556 468 60 9 3325 3767 581260806 581261267 1.100000e-86 331.0
64 TraesCS7A01G229300 chr5B 86.486 74 5 3 5215 5283 52942937 52943010 5.670000e-10 76.8
65 TraesCS7A01G229300 chr2B 88.338 686 55 17 1 677 131927380 131928049 0.000000e+00 800.0
66 TraesCS7A01G229300 chr2B 90.354 622 25 11 3666 4286 442464048 442464635 0.000000e+00 784.0
67 TraesCS7A01G229300 chr2B 87.318 481 51 8 2397 2875 37431844 37431372 4.650000e-150 542.0
68 TraesCS7A01G229300 chr2B 81.321 439 48 7 3325 3734 26701691 26702124 5.100000e-85 326.0
69 TraesCS7A01G229300 chr2B 89.362 47 5 0 2336 2382 254786296 254786250 5.710000e-05 60.2
70 TraesCS7A01G229300 chr7B 90.514 622 25 11 3666 4286 688017309 688017897 0.000000e+00 791.0
71 TraesCS7A01G229300 chr7B 90.278 72 5 1 5214 5283 517427082 517427153 5.630000e-15 93.5
72 TraesCS7A01G229300 chr7D 92.762 525 36 2 679 1202 45982336 45981813 0.000000e+00 758.0
73 TraesCS7A01G229300 chr7D 87.972 424 39 9 1718 2131 70219789 70220210 1.710000e-134 490.0
74 TraesCS7A01G229300 chr5D 89.333 525 42 3 680 1203 168393976 168393465 0.000000e+00 647.0
75 TraesCS7A01G229300 chr5D 88.783 526 33 9 679 1203 556581436 556580936 5.810000e-174 621.0
76 TraesCS7A01G229300 chr5D 82.381 210 30 5 1924 2131 495402517 495402313 5.440000e-40 176.0
77 TraesCS7A01G229300 chr5D 85.714 77 3 3 5215 5283 490716841 490716765 2.040000e-09 75.0
78 TraesCS7A01G229300 chr5D 83.117 77 5 2 5215 5283 206952099 206952023 4.420000e-06 63.9
79 TraesCS7A01G229300 chr6B 87.619 525 44 3 679 1202 711531664 711531160 1.640000e-164 590.0
80 TraesCS7A01G229300 chr6B 86.364 66 7 1 5215 5280 648586059 648586122 2.640000e-08 71.3
81 TraesCS7A01G229300 chr1B 85.770 513 63 8 4681 5187 177474822 177474314 7.790000e-148 534.0
82 TraesCS7A01G229300 chr1B 85.271 516 65 10 4680 5188 32603604 32603093 6.060000e-144 521.0
83 TraesCS7A01G229300 chr1B 84.333 517 69 10 4680 5188 665777786 665777274 3.670000e-136 496.0
84 TraesCS7A01G229300 chr4D 84.416 77 4 3 5215 5283 192442862 192442786 9.490000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G229300 chr7A 199437676 199442958 5282 True 9756.0 9756 100.0000 1 5283 1 chr7A.!!$R2 5282
1 TraesCS7A01G229300 chr7A 331175233 331175760 527 False 606.0 606 87.5240 679 1202 1 chr7A.!!$F1 523
2 TraesCS7A01G229300 chrUn 295944201 295946079 1878 True 3086.0 3086 96.2510 1252 3141 1 chrUn.!!$R2 1889
3 TraesCS7A01G229300 chrUn 48341751 48343682 1931 True 2992.0 2992 94.5380 3236 5186 1 chrUn.!!$R1 1950
4 TraesCS7A01G229300 chrUn 70721429 70722624 1195 False 1659.0 1659 91.6740 1 1206 1 chrUn.!!$F1 1205
5 TraesCS7A01G229300 chrUn 265947903 265948532 629 False 1033.0 1033 96.3550 2336 2962 1 chrUn.!!$F2 626
6 TraesCS7A01G229300 chrUn 324062075 324062704 629 True 1022.0 1022 96.0380 2336 2962 1 chrUn.!!$R3 626
7 TraesCS7A01G229300 chr4A 611287376 611289257 1881 False 3086.0 3086 96.2050 1249 3141 1 chr4A.!!$F2 1892
8 TraesCS7A01G229300 chr4A 516029802 516031467 1665 True 2490.0 2490 93.5980 3063 4740 1 chr4A.!!$R1 1677
9 TraesCS7A01G229300 chr4A 516077182 516078767 1585 True 1191.0 1916 93.9240 3063 4740 2 chr4A.!!$R2 1677
10 TraesCS7A01G229300 chr4A 139723185 139723838 653 False 848.0 848 90.2110 1 655 1 chr4A.!!$F1 654
11 TraesCS7A01G229300 chr4B 597424944 597430729 5785 True 1417.0 2662 96.0240 2397 4740 2 chr4B.!!$R3 2343
12 TraesCS7A01G229300 chr4B 669668633 669669703 1070 True 1280.0 1280 88.4830 3669 4740 1 chr4B.!!$R2 1071
13 TraesCS7A01G229300 chr4B 604278318 604279232 914 False 1109.0 1109 88.9010 4292 5188 1 chr4B.!!$F1 896
14 TraesCS7A01G229300 chr4B 604965976 604966513 537 False 848.0 848 95.0180 3201 3742 1 chr4B.!!$F2 541
15 TraesCS7A01G229300 chr4B 291451632 291452325 693 True 560.0 560 81.9720 1 681 1 chr4B.!!$R1 680
16 TraesCS7A01G229300 chr3A 30943024 30944694 1670 False 2521.0 2521 93.9130 3063 4740 1 chr3A.!!$F2 1677
17 TraesCS7A01G229300 chr3A 577563490 577564397 907 True 1123.0 1123 88.8540 1194 2131 1 chr3A.!!$R1 937
18 TraesCS7A01G229300 chr3A 689752706 689755774 3068 True 965.5 1419 92.7410 2122 5188 2 chr3A.!!$R3 3066
19 TraesCS7A01G229300 chr3A 21305117 21305798 681 False 904.0 904 90.7380 1 681 1 chr3A.!!$F1 680
20 TraesCS7A01G229300 chr1D 16465740 16466922 1182 False 1587.0 1587 90.8260 1 1202 1 chr1D.!!$F1 1201
21 TraesCS7A01G229300 chr2D 10055047 10056205 1158 False 1513.0 1513 90.0830 10 1202 1 chr2D.!!$F1 1192
22 TraesCS7A01G229300 chr2D 408776606 408777267 661 False 1027.0 1027 94.7680 3626 4286 1 chr2D.!!$F3 660
23 TraesCS7A01G229300 chr2D 279104284 279105849 1565 True 807.0 1397 92.8980 3063 4239 2 chr2D.!!$R3 1176
24 TraesCS7A01G229300 chr2D 586828255 586828756 501 False 654.0 654 89.9050 679 1202 1 chr2D.!!$F4 523
25 TraesCS7A01G229300 chr2D 229309793 229310380 587 False 545.0 545 83.6900 86 681 1 chr2D.!!$F2 595
26 TraesCS7A01G229300 chr2A 349697156 349697958 802 False 1007.0 1007 89.6770 3455 4239 1 chr2A.!!$F4 784
27 TraesCS7A01G229300 chr2A 269304277 269307343 3066 True 958.0 1400 92.6790 2122 5187 2 chr2A.!!$R3 3065
28 TraesCS7A01G229300 chr2A 269266504 269269569 3065 True 955.0 1400 92.5435 2122 5187 2 chr2A.!!$R2 3065
29 TraesCS7A01G229300 chr2A 606696367 606696966 599 True 926.0 926 94.5720 3626 4225 1 chr2A.!!$R1 599
30 TraesCS7A01G229300 chr2A 27053997 27054662 665 False 905.0 905 91.4410 1 656 1 chr2A.!!$F2 655
31 TraesCS7A01G229300 chr3B 574681569 574682497 928 True 1230.0 1230 90.7190 1194 2131 1 chr3B.!!$R2 937
32 TraesCS7A01G229300 chr3D 438608124 438609060 936 True 1170.0 1170 89.6340 1194 2117 1 chr3D.!!$R1 923
33 TraesCS7A01G229300 chr3D 30775178 30776078 900 False 1040.0 1040 87.8260 4292 5188 1 chr3D.!!$F1 896
34 TraesCS7A01G229300 chr3D 570948174 570948786 612 False 885.0 885 92.6870 3666 4286 1 chr3D.!!$F2 620
35 TraesCS7A01G229300 chr6A 576842407 576843260 853 True 1155.0 1155 91.4150 3900 4740 1 chr6A.!!$R1 840
36 TraesCS7A01G229300 chr6A 9593178 9593848 670 False 878.0 878 90.2470 1 681 1 chr6A.!!$F1 680
37 TraesCS7A01G229300 chr5A 21831036 21831722 686 False 915.0 915 90.9090 1 681 1 chr5A.!!$F1 680
38 TraesCS7A01G229300 chr5B 291648309 291648970 661 True 900.0 900 91.4160 1 655 1 chr5B.!!$R1 654
39 TraesCS7A01G229300 chr2B 131927380 131928049 669 False 800.0 800 88.3380 1 677 1 chr2B.!!$F2 676
40 TraesCS7A01G229300 chr2B 442464048 442464635 587 False 784.0 784 90.3540 3666 4286 1 chr2B.!!$F3 620
41 TraesCS7A01G229300 chr7B 688017309 688017897 588 False 791.0 791 90.5140 3666 4286 1 chr7B.!!$F2 620
42 TraesCS7A01G229300 chr7D 45981813 45982336 523 True 758.0 758 92.7620 679 1202 1 chr7D.!!$R1 523
43 TraesCS7A01G229300 chr5D 168393465 168393976 511 True 647.0 647 89.3330 680 1203 1 chr5D.!!$R1 523
44 TraesCS7A01G229300 chr5D 556580936 556581436 500 True 621.0 621 88.7830 679 1203 1 chr5D.!!$R5 524
45 TraesCS7A01G229300 chr6B 711531160 711531664 504 True 590.0 590 87.6190 679 1202 1 chr6B.!!$R1 523
46 TraesCS7A01G229300 chr1B 177474314 177474822 508 True 534.0 534 85.7700 4681 5187 1 chr1B.!!$R2 506
47 TraesCS7A01G229300 chr1B 32603093 32603604 511 True 521.0 521 85.2710 4680 5188 1 chr1B.!!$R1 508
48 TraesCS7A01G229300 chr1B 665777274 665777786 512 True 496.0 496 84.3330 4680 5188 1 chr1B.!!$R3 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 910 1.174783 GCCGTACTCTTCTCCAGTCA 58.825 55.0 0.00 0.0 0.0 3.41 F
1690 1806 0.464036 AGTGCACCAGAAGTTCGACA 59.536 50.0 14.63 0.0 0.0 4.35 F
2060 2201 0.039798 CGTCTTCCTCGTCCGTTTCA 60.040 55.0 0.00 0.0 0.0 2.69 F
2067 2208 0.249741 CTCGTCCGTTTCACCAAGGT 60.250 55.0 0.00 0.0 0.0 3.50 F
2618 3531 0.608130 ACACGGATCAGTTGCTGCTA 59.392 50.0 0.00 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1910 0.458543 CGTAGTTGCAGGCGATGAGT 60.459 55.000 0.00 0.0 0.00 3.41 R
2839 6525 2.027377 AGAACCTGACTGGAGCAGAATG 60.027 50.000 5.22 0.0 39.71 2.67 R
3179 6959 2.836636 AGGAGTGCTGATACAGGAGA 57.163 50.000 0.00 0.0 31.31 3.71 R
3428 7582 3.673809 CAGTAGTACAAAGGTGTTCGAGC 59.326 47.826 2.52 0.0 39.30 5.03 R
4403 9228 4.122046 GGCTTTGCACTTCAAATTTGTCT 58.878 39.130 17.47 0.0 43.14 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.993220 GTGAATTGGCGGAAATTTGTCC 59.007 45.455 0.00 0.00 29.89 4.02
135 136 6.563222 AATGATTTGGTCCAATTTTGCAAG 57.437 33.333 4.80 0.00 0.00 4.01
144 145 9.784531 TTGGTCCAATTTTGCAAGAATTATTTA 57.215 25.926 14.85 4.10 0.00 1.40
189 197 5.122711 CCATTTTGGCCACAAGAAAATGATC 59.877 40.000 29.22 0.00 44.46 2.92
291 300 3.530535 AGTTCTGCCGTTTTGCAAAATT 58.469 36.364 26.24 0.00 41.51 1.82
385 397 1.272092 CCAATCAAGGCTCTTCCCACA 60.272 52.381 0.00 0.00 34.51 4.17
587 649 1.864559 ACCTCCTCCTCCCTGTCCT 60.865 63.158 0.00 0.00 0.00 3.85
598 660 4.787280 CTGTCCTCGGCCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
738 833 3.500289 CCTCTCCCTCCCTTAGATCTCAG 60.500 56.522 0.00 0.00 0.00 3.35
812 910 1.174783 GCCGTACTCTTCTCCAGTCA 58.825 55.000 0.00 0.00 0.00 3.41
839 937 1.899437 GACCTCCAACCTCATCGCCA 61.899 60.000 0.00 0.00 0.00 5.69
847 945 4.478371 CTCATCGCCAGCAGCCCA 62.478 66.667 0.00 0.00 38.78 5.36
856 954 2.286732 AGCAGCCCATCCCCTCTT 60.287 61.111 0.00 0.00 0.00 2.85
1007 1105 4.388499 GCCACGGTCCATGGACGT 62.388 66.667 33.24 29.46 45.41 4.34
1184 1287 2.610859 GGCTCACTTCCCCCTCCA 60.611 66.667 0.00 0.00 0.00 3.86
1339 1446 1.368209 CAATGCCAGTTTGCAGCCA 59.632 52.632 0.00 0.00 45.93 4.75
1584 1699 2.654749 TCCATGCTCTGTTGACTACG 57.345 50.000 0.00 0.00 0.00 3.51
1690 1806 0.464036 AGTGCACCAGAAGTTCGACA 59.536 50.000 14.63 0.00 0.00 4.35
1809 1925 0.811616 CCCTACTCATCGCCTGCAAC 60.812 60.000 0.00 0.00 0.00 4.17
1829 1945 1.757118 CTACGAGGAGATTTGGGCTCA 59.243 52.381 0.00 0.00 34.07 4.26
1848 1965 6.113411 GGCTCATGAGGTAAGTAAAAAGCTA 58.887 40.000 23.89 0.00 0.00 3.32
2060 2201 0.039798 CGTCTTCCTCGTCCGTTTCA 60.040 55.000 0.00 0.00 0.00 2.69
2067 2208 0.249741 CTCGTCCGTTTCACCAAGGT 60.250 55.000 0.00 0.00 0.00 3.50
2071 2212 1.890041 CCGTTTCACCAAGGTCGCA 60.890 57.895 0.00 0.00 0.00 5.10
2326 2467 8.892723 TCTGATTATGATTTGTCGCTTATTGTT 58.107 29.630 0.00 0.00 0.00 2.83
2618 3531 0.608130 ACACGGATCAGTTGCTGCTA 59.392 50.000 0.00 0.00 0.00 3.49
2733 3646 5.940470 GTCTCTGTTTCAACCATACAATCCT 59.060 40.000 0.00 0.00 0.00 3.24
2762 4329 5.534654 GCATAAGGTGGATAAGGCAAATACA 59.465 40.000 0.00 0.00 0.00 2.29
2770 4337 5.132648 TGGATAAGGCAAATACAGGAGACAT 59.867 40.000 0.00 0.00 0.00 3.06
2825 6511 2.876550 AGAACCTTACGGTCTTGCAAAC 59.123 45.455 0.00 1.91 44.73 2.93
2839 6525 6.019559 GGTCTTGCAAACTCTTCAAAATCAAC 60.020 38.462 0.00 0.00 0.00 3.18
2918 6605 7.437713 TCCTGTAAGTCATGGTTTATCTCAT 57.562 36.000 0.00 0.00 0.00 2.90
3162 6941 3.437049 GCTTCAGCTACTAAAACCCACTG 59.563 47.826 0.00 0.00 38.21 3.66
3179 6959 3.068590 CCACTGGCAAATTTGTCTTCTGT 59.931 43.478 22.47 13.11 33.01 3.41
3318 7472 7.389607 TGAGGCTTTGTTACCTACTCATTTTAC 59.610 37.037 0.00 0.00 36.05 2.01
3428 7582 7.525688 AGAATATGTCTGTTCACATGTTACG 57.474 36.000 0.00 0.00 37.99 3.18
3567 7721 6.644347 TGTTCCATACATTTGTTGTTGGTTT 58.356 32.000 0.00 0.00 39.87 3.27
3920 8659 8.860088 AGAAGCTATGGTATTTTGTTTTGAGTT 58.140 29.630 0.00 0.00 0.00 3.01
4123 8917 5.686753 TCCTTGTGGTTGTTACTGTTACAT 58.313 37.500 0.01 0.00 34.23 2.29
4124 8918 5.529430 TCCTTGTGGTTGTTACTGTTACATG 59.471 40.000 0.01 0.00 34.23 3.21
4125 8919 5.298276 CCTTGTGGTTGTTACTGTTACATGT 59.702 40.000 2.69 2.69 0.00 3.21
4126 8920 6.183360 CCTTGTGGTTGTTACTGTTACATGTT 60.183 38.462 2.30 0.00 0.00 2.71
4127 8921 7.012515 CCTTGTGGTTGTTACTGTTACATGTTA 59.987 37.037 2.30 0.00 0.00 2.41
4128 8922 7.485418 TGTGGTTGTTACTGTTACATGTTAG 57.515 36.000 2.30 3.21 0.00 2.34
4129 8923 7.273712 TGTGGTTGTTACTGTTACATGTTAGA 58.726 34.615 2.30 0.00 0.00 2.10
4155 8949 4.965814 ACATATGCTTCATGATTCGGTCT 58.034 39.130 1.58 0.00 0.00 3.85
4267 9092 3.548818 CCAACCTGAAAGTGAAGAAAGCG 60.549 47.826 0.00 0.00 0.00 4.68
4403 9228 3.196901 TCACTCTTTTATAGGAGCGCCAA 59.803 43.478 9.88 0.00 36.29 4.52
4666 9514 8.889445 TGTGGGACCAATATATGAGATTATGAA 58.111 33.333 0.00 0.00 0.00 2.57
4707 9558 3.559069 AGATTATGATGTGGGGCTTGTG 58.441 45.455 0.00 0.00 0.00 3.33
4759 9705 6.279513 TGGCCGAAATTAGAAAATTGATGT 57.720 33.333 0.00 0.00 35.46 3.06
4835 9783 4.487948 CATGAAGCCGACACAAAATTCAT 58.512 39.130 0.00 0.00 37.76 2.57
4874 9828 0.968405 GCTGAATTGTTGGGCTTGGA 59.032 50.000 0.00 0.00 0.00 3.53
4899 9853 2.288091 TGTAAAACGTCGAATCGGACCA 60.288 45.455 1.76 0.00 33.30 4.02
4972 9926 1.966901 TTGCCACGTCGGATGCCTAT 61.967 55.000 8.04 0.00 36.56 2.57
5188 10156 6.743575 AGTTGACATATTTCTTGTAGTGGC 57.256 37.500 0.00 0.00 0.00 5.01
5189 10157 6.237901 AGTTGACATATTTCTTGTAGTGGCA 58.762 36.000 0.00 0.00 0.00 4.92
5190 10158 6.372659 AGTTGACATATTTCTTGTAGTGGCAG 59.627 38.462 0.00 0.00 0.00 4.85
5191 10159 4.635765 TGACATATTTCTTGTAGTGGCAGC 59.364 41.667 0.00 0.00 0.00 5.25
5192 10160 4.588899 ACATATTTCTTGTAGTGGCAGCA 58.411 39.130 0.00 0.00 0.00 4.41
5193 10161 4.637534 ACATATTTCTTGTAGTGGCAGCAG 59.362 41.667 0.00 0.00 0.00 4.24
5194 10162 2.638480 TTTCTTGTAGTGGCAGCAGT 57.362 45.000 0.00 0.00 0.00 4.40
5195 10163 3.762407 TTTCTTGTAGTGGCAGCAGTA 57.238 42.857 0.00 0.00 0.00 2.74
5196 10164 3.762407 TTCTTGTAGTGGCAGCAGTAA 57.238 42.857 0.00 0.00 0.00 2.24
5197 10165 3.040147 TCTTGTAGTGGCAGCAGTAAC 57.960 47.619 0.00 0.00 0.00 2.50
5198 10166 2.076863 CTTGTAGTGGCAGCAGTAACC 58.923 52.381 0.00 0.00 0.00 2.85
5199 10167 1.348064 TGTAGTGGCAGCAGTAACCT 58.652 50.000 0.00 0.00 0.00 3.50
5200 10168 1.275291 TGTAGTGGCAGCAGTAACCTC 59.725 52.381 0.00 0.00 0.00 3.85
5201 10169 1.550976 GTAGTGGCAGCAGTAACCTCT 59.449 52.381 0.00 0.00 0.00 3.69
5202 10170 1.059913 AGTGGCAGCAGTAACCTCTT 58.940 50.000 0.00 0.00 0.00 2.85
5203 10171 1.002544 AGTGGCAGCAGTAACCTCTTC 59.997 52.381 0.00 0.00 0.00 2.87
5204 10172 1.002544 GTGGCAGCAGTAACCTCTTCT 59.997 52.381 0.00 0.00 0.00 2.85
5205 10173 1.699634 TGGCAGCAGTAACCTCTTCTT 59.300 47.619 0.00 0.00 0.00 2.52
5206 10174 2.079925 GGCAGCAGTAACCTCTTCTTG 58.920 52.381 0.00 0.00 0.00 3.02
5207 10175 2.551071 GGCAGCAGTAACCTCTTCTTGT 60.551 50.000 0.00 0.00 0.00 3.16
5208 10176 3.142174 GCAGCAGTAACCTCTTCTTGTT 58.858 45.455 0.00 0.00 0.00 2.83
5209 10177 3.187432 GCAGCAGTAACCTCTTCTTGTTC 59.813 47.826 0.00 0.00 0.00 3.18
5210 10178 3.748568 CAGCAGTAACCTCTTCTTGTTCC 59.251 47.826 0.00 0.00 0.00 3.62
5211 10179 3.391296 AGCAGTAACCTCTTCTTGTTCCA 59.609 43.478 0.00 0.00 0.00 3.53
5212 10180 3.748568 GCAGTAACCTCTTCTTGTTCCAG 59.251 47.826 0.00 0.00 0.00 3.86
5213 10181 4.743955 GCAGTAACCTCTTCTTGTTCCAGT 60.744 45.833 0.00 0.00 0.00 4.00
5214 10182 5.368989 CAGTAACCTCTTCTTGTTCCAGTT 58.631 41.667 0.00 0.00 0.00 3.16
5215 10183 5.467063 CAGTAACCTCTTCTTGTTCCAGTTC 59.533 44.000 0.00 0.00 0.00 3.01
5216 10184 4.779993 AACCTCTTCTTGTTCCAGTTCT 57.220 40.909 0.00 0.00 0.00 3.01
5217 10185 4.779993 ACCTCTTCTTGTTCCAGTTCTT 57.220 40.909 0.00 0.00 0.00 2.52
5218 10186 4.709250 ACCTCTTCTTGTTCCAGTTCTTC 58.291 43.478 0.00 0.00 0.00 2.87
5219 10187 4.410555 ACCTCTTCTTGTTCCAGTTCTTCT 59.589 41.667 0.00 0.00 0.00 2.85
5220 10188 5.104318 ACCTCTTCTTGTTCCAGTTCTTCTT 60.104 40.000 0.00 0.00 0.00 2.52
5221 10189 6.099845 ACCTCTTCTTGTTCCAGTTCTTCTTA 59.900 38.462 0.00 0.00 0.00 2.10
5222 10190 7.164803 CCTCTTCTTGTTCCAGTTCTTCTTAT 58.835 38.462 0.00 0.00 0.00 1.73
5223 10191 7.663493 CCTCTTCTTGTTCCAGTTCTTCTTATT 59.337 37.037 0.00 0.00 0.00 1.40
5224 10192 8.608844 TCTTCTTGTTCCAGTTCTTCTTATTC 57.391 34.615 0.00 0.00 0.00 1.75
5225 10193 8.210946 TCTTCTTGTTCCAGTTCTTCTTATTCA 58.789 33.333 0.00 0.00 0.00 2.57
5226 10194 7.969536 TCTTGTTCCAGTTCTTCTTATTCAG 57.030 36.000 0.00 0.00 0.00 3.02
5227 10195 6.936900 TCTTGTTCCAGTTCTTCTTATTCAGG 59.063 38.462 0.00 0.00 0.00 3.86
5228 10196 5.003804 TGTTCCAGTTCTTCTTATTCAGGC 58.996 41.667 0.00 0.00 0.00 4.85
5229 10197 5.221925 TGTTCCAGTTCTTCTTATTCAGGCT 60.222 40.000 0.00 0.00 0.00 4.58
5230 10198 5.091261 TCCAGTTCTTCTTATTCAGGCTC 57.909 43.478 0.00 0.00 0.00 4.70
5231 10199 4.780021 TCCAGTTCTTCTTATTCAGGCTCT 59.220 41.667 0.00 0.00 0.00 4.09
5232 10200 5.249393 TCCAGTTCTTCTTATTCAGGCTCTT 59.751 40.000 0.00 0.00 0.00 2.85
5233 10201 5.584251 CCAGTTCTTCTTATTCAGGCTCTTC 59.416 44.000 0.00 0.00 0.00 2.87
5234 10202 6.405538 CAGTTCTTCTTATTCAGGCTCTTCT 58.594 40.000 0.00 0.00 0.00 2.85
5235 10203 6.878389 CAGTTCTTCTTATTCAGGCTCTTCTT 59.122 38.462 0.00 0.00 0.00 2.52
5236 10204 6.878389 AGTTCTTCTTATTCAGGCTCTTCTTG 59.122 38.462 0.00 0.00 0.00 3.02
5237 10205 6.365970 TCTTCTTATTCAGGCTCTTCTTGT 57.634 37.500 0.00 0.00 0.00 3.16
5238 10206 6.773638 TCTTCTTATTCAGGCTCTTCTTGTT 58.226 36.000 0.00 0.00 0.00 2.83
5239 10207 6.876257 TCTTCTTATTCAGGCTCTTCTTGTTC 59.124 38.462 0.00 0.00 0.00 3.18
5240 10208 5.491982 TCTTATTCAGGCTCTTCTTGTTCC 58.508 41.667 0.00 0.00 0.00 3.62
5241 10209 2.169832 TTCAGGCTCTTCTTGTTCCG 57.830 50.000 0.00 0.00 0.00 4.30
5242 10210 0.321671 TCAGGCTCTTCTTGTTCCGG 59.678 55.000 0.00 0.00 0.00 5.14
5243 10211 1.003233 AGGCTCTTCTTGTTCCGGC 60.003 57.895 0.00 0.00 0.00 6.13
5244 10212 1.003233 GGCTCTTCTTGTTCCGGCT 60.003 57.895 0.00 0.00 0.00 5.52
5245 10213 1.021920 GGCTCTTCTTGTTCCGGCTC 61.022 60.000 0.00 0.00 0.00 4.70
5246 10214 0.320771 GCTCTTCTTGTTCCGGCTCA 60.321 55.000 0.00 0.00 0.00 4.26
5247 10215 1.677217 GCTCTTCTTGTTCCGGCTCAT 60.677 52.381 0.00 0.00 0.00 2.90
5248 10216 2.005451 CTCTTCTTGTTCCGGCTCATG 58.995 52.381 0.00 0.84 0.00 3.07
5249 10217 0.449388 CTTCTTGTTCCGGCTCATGC 59.551 55.000 0.00 0.00 38.76 4.06
5250 10218 0.036732 TTCTTGTTCCGGCTCATGCT 59.963 50.000 0.00 0.00 39.59 3.79
5251 10219 0.391661 TCTTGTTCCGGCTCATGCTC 60.392 55.000 0.00 0.00 39.59 4.26
5252 10220 1.699656 CTTGTTCCGGCTCATGCTCG 61.700 60.000 0.00 0.00 39.59 5.03
5253 10221 2.125512 GTTCCGGCTCATGCTCGT 60.126 61.111 0.00 0.00 39.59 4.18
5254 10222 1.741770 GTTCCGGCTCATGCTCGTT 60.742 57.895 0.00 0.00 39.59 3.85
5255 10223 1.447838 TTCCGGCTCATGCTCGTTC 60.448 57.895 0.00 0.00 39.59 3.95
5256 10224 2.125552 CCGGCTCATGCTCGTTCA 60.126 61.111 0.00 0.00 39.59 3.18
5257 10225 2.456119 CCGGCTCATGCTCGTTCAC 61.456 63.158 0.00 0.00 39.59 3.18
5258 10226 1.446792 CGGCTCATGCTCGTTCACT 60.447 57.895 0.00 0.00 39.59 3.41
5259 10227 0.179137 CGGCTCATGCTCGTTCACTA 60.179 55.000 0.00 0.00 39.59 2.74
5260 10228 1.536922 CGGCTCATGCTCGTTCACTAT 60.537 52.381 0.00 0.00 39.59 2.12
5261 10229 2.131183 GGCTCATGCTCGTTCACTATC 58.869 52.381 0.00 0.00 39.59 2.08
5262 10230 1.783711 GCTCATGCTCGTTCACTATCG 59.216 52.381 0.00 0.00 36.03 2.92
5263 10231 1.783711 CTCATGCTCGTTCACTATCGC 59.216 52.381 0.00 0.00 0.00 4.58
5264 10232 1.405463 TCATGCTCGTTCACTATCGCT 59.595 47.619 0.00 0.00 0.00 4.93
5265 10233 1.520174 CATGCTCGTTCACTATCGCTG 59.480 52.381 0.00 0.00 0.00 5.18
5266 10234 0.526211 TGCTCGTTCACTATCGCTGT 59.474 50.000 0.00 0.00 0.00 4.40
5267 10235 1.192793 GCTCGTTCACTATCGCTGTC 58.807 55.000 0.00 0.00 0.00 3.51
5268 10236 1.202200 GCTCGTTCACTATCGCTGTCT 60.202 52.381 0.00 0.00 0.00 3.41
5269 10237 2.031807 GCTCGTTCACTATCGCTGTCTA 59.968 50.000 0.00 0.00 0.00 2.59
5270 10238 3.609475 CTCGTTCACTATCGCTGTCTAC 58.391 50.000 0.00 0.00 0.00 2.59
5271 10239 3.268330 TCGTTCACTATCGCTGTCTACT 58.732 45.455 0.00 0.00 0.00 2.57
5272 10240 3.688185 TCGTTCACTATCGCTGTCTACTT 59.312 43.478 0.00 0.00 0.00 2.24
5273 10241 4.029704 CGTTCACTATCGCTGTCTACTTC 58.970 47.826 0.00 0.00 0.00 3.01
5274 10242 4.436986 CGTTCACTATCGCTGTCTACTTCA 60.437 45.833 0.00 0.00 0.00 3.02
5275 10243 5.399858 GTTCACTATCGCTGTCTACTTCAA 58.600 41.667 0.00 0.00 0.00 2.69
5276 10244 5.836821 TCACTATCGCTGTCTACTTCAAT 57.163 39.130 0.00 0.00 0.00 2.57
5277 10245 5.582550 TCACTATCGCTGTCTACTTCAATG 58.417 41.667 0.00 0.00 0.00 2.82
5278 10246 5.125578 TCACTATCGCTGTCTACTTCAATGT 59.874 40.000 0.00 0.00 0.00 2.71
5279 10247 5.807520 CACTATCGCTGTCTACTTCAATGTT 59.192 40.000 0.00 0.00 0.00 2.71
5280 10248 6.020281 CACTATCGCTGTCTACTTCAATGTTC 60.020 42.308 0.00 0.00 0.00 3.18
5281 10249 4.521130 TCGCTGTCTACTTCAATGTTCT 57.479 40.909 0.00 0.00 0.00 3.01
5282 10250 4.237724 TCGCTGTCTACTTCAATGTTCTG 58.762 43.478 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.993220 GGACAAATTTCCGCCAATTCAC 59.007 45.455 0.00 0.00 0.00 3.18
224 232 5.047377 CCCCATTTTTATGGATAATCACCGG 60.047 44.000 0.00 0.00 44.39 5.28
291 300 7.491048 GGAACTTTGTGAAGCAACTATCAAAAA 59.509 33.333 0.00 0.00 36.72 1.94
572 628 2.684104 CGAGGACAGGGAGGAGGA 59.316 66.667 0.00 0.00 0.00 3.71
587 649 4.088351 TGGATCAGGAGGGGCCGA 62.088 66.667 0.00 0.00 43.43 5.54
598 660 2.041922 CGGGGAGGAGGTGGATCA 60.042 66.667 0.00 0.00 0.00 2.92
666 760 0.178900 AGAAGGGGAAGGACGAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
676 770 2.291043 GCGTGGGAGAGAAGGGGAA 61.291 63.158 0.00 0.00 0.00 3.97
812 910 4.309950 GTTGGAGGTCGCCGGTGT 62.310 66.667 16.01 0.00 0.00 4.16
839 937 2.286732 AAGAGGGGATGGGCTGCT 60.287 61.111 0.00 0.00 0.00 4.24
847 945 3.075181 TGGATCTAGGAGAAGAGGGGAT 58.925 50.000 0.00 0.00 0.00 3.85
856 954 0.178987 GCCCGAGTGGATCTAGGAGA 60.179 60.000 0.00 0.00 40.66 3.71
1022 1120 4.778143 CCCGGTACAGCAGCACCC 62.778 72.222 0.00 0.00 0.00 4.61
1174 1276 3.636231 CTGCGTGTGGAGGGGGAA 61.636 66.667 0.00 0.00 0.00 3.97
1184 1287 2.279918 GGACGGTGAACTGCGTGT 60.280 61.111 0.00 0.00 0.00 4.49
1339 1446 0.107945 GCTGGCTCTTCGGTGATTCT 60.108 55.000 0.00 0.00 0.00 2.40
1584 1699 1.450312 CTGGCCCGACACTCATTCC 60.450 63.158 0.00 0.00 0.00 3.01
1622 1737 0.933097 CATCTTGGCGTTGATCTCCG 59.067 55.000 0.00 0.00 0.00 4.63
1690 1806 1.391933 TACAGCGACTCGGGCATCAT 61.392 55.000 0.00 0.00 0.00 2.45
1794 1910 0.458543 CGTAGTTGCAGGCGATGAGT 60.459 55.000 0.00 0.00 0.00 3.41
1809 1925 1.757118 TGAGCCCAAATCTCCTCGTAG 59.243 52.381 0.00 0.00 0.00 3.51
1829 1945 8.336987 AGGGATTTAGCTTTTTACTTACCTCAT 58.663 33.333 0.00 0.00 0.00 2.90
1848 1965 3.075134 AGTGGAGAAAAGCAGAGGGATTT 59.925 43.478 0.00 0.00 36.48 2.17
2060 2201 2.045926 GGAGCATGCGACCTTGGT 60.046 61.111 23.09 0.87 0.00 3.67
2067 2208 2.042537 AGGAGGAGGAGCATGCGA 60.043 61.111 13.01 0.00 0.00 5.10
2071 2212 0.541764 GATCGGAGGAGGAGGAGCAT 60.542 60.000 0.00 0.00 0.00 3.79
2326 2467 7.750229 ACTTTCTTTCAGCAACATCATTCTA 57.250 32.000 0.00 0.00 0.00 2.10
2406 2547 1.271163 CCGAAAAGGACCCAAGCTACA 60.271 52.381 0.00 0.00 45.00 2.74
2618 3531 4.270008 CTCCTCCGAATTGTTGGGTTTAT 58.730 43.478 0.00 0.00 0.00 1.40
2733 3646 4.658435 TGCCTTATCCACCTTATGCTAGAA 59.342 41.667 0.00 0.00 0.00 2.10
2762 4329 5.453339 CCCAATATGTACGACAATGTCTCCT 60.453 44.000 11.92 0.00 0.00 3.69
2770 4337 3.210227 CCATGCCCAATATGTACGACAA 58.790 45.455 0.00 0.00 0.00 3.18
2825 6511 6.091437 GGAGCAGAATGTTGATTTTGAAGAG 58.909 40.000 0.00 0.00 39.31 2.85
2839 6525 2.027377 AGAACCTGACTGGAGCAGAATG 60.027 50.000 5.22 0.00 39.71 2.67
3162 6941 3.823304 AGGAGACAGAAGACAAATTTGCC 59.177 43.478 18.12 7.29 0.00 4.52
3179 6959 2.836636 AGGAGTGCTGATACAGGAGA 57.163 50.000 0.00 0.00 31.31 3.71
3428 7582 3.673809 CAGTAGTACAAAGGTGTTCGAGC 59.326 47.826 2.52 0.00 39.30 5.03
4123 8917 9.783081 AATCATGAAGCATATGTACATCTAACA 57.217 29.630 12.68 8.14 0.00 2.41
4125 8919 9.143631 CGAATCATGAAGCATATGTACATCTAA 57.856 33.333 12.68 0.00 0.00 2.10
4126 8920 7.761249 CCGAATCATGAAGCATATGTACATCTA 59.239 37.037 12.68 0.00 0.00 1.98
4127 8921 6.592994 CCGAATCATGAAGCATATGTACATCT 59.407 38.462 12.68 0.00 0.00 2.90
4128 8922 6.369890 ACCGAATCATGAAGCATATGTACATC 59.630 38.462 12.68 0.00 0.00 3.06
4129 8923 6.233434 ACCGAATCATGAAGCATATGTACAT 58.767 36.000 13.93 13.93 0.00 2.29
4267 9092 6.641474 ACAAAGGCTCTACAAGTATACTTCC 58.359 40.000 15.35 12.08 33.11 3.46
4403 9228 4.122046 GGCTTTGCACTTCAAATTTGTCT 58.878 39.130 17.47 0.00 43.14 3.41
4672 9520 9.085250 CACATCATAATCTCATACATACTGCTC 57.915 37.037 0.00 0.00 0.00 4.26
4707 9558 4.468689 GCCGGGCCCACTAGTCAC 62.469 72.222 24.92 0.00 0.00 3.67
4874 9828 2.669434 CCGATTCGACGTTTTACATGGT 59.331 45.455 7.83 0.00 0.00 3.55
4899 9853 7.951347 AAAGTTCATTGATAAGATTCAGCCT 57.049 32.000 0.00 0.00 0.00 4.58
4930 9884 3.635836 TCTGATGTGGCAAAATTGTGACA 59.364 39.130 0.00 0.00 32.74 3.58
4991 9945 3.848272 ACTGTTGTGTTTTGGTCACTG 57.152 42.857 0.00 0.00 36.83 3.66
5188 10156 3.748568 GGAACAAGAAGAGGTTACTGCTG 59.251 47.826 0.00 0.00 0.00 4.41
5189 10157 3.391296 TGGAACAAGAAGAGGTTACTGCT 59.609 43.478 0.00 0.00 31.92 4.24
5190 10158 3.740115 TGGAACAAGAAGAGGTTACTGC 58.260 45.455 0.00 0.00 31.92 4.40
5191 10159 4.962155 ACTGGAACAAGAAGAGGTTACTG 58.038 43.478 0.00 0.00 38.70 2.74
5192 10160 5.367060 AGAACTGGAACAAGAAGAGGTTACT 59.633 40.000 0.00 0.00 38.70 2.24
5193 10161 5.612351 AGAACTGGAACAAGAAGAGGTTAC 58.388 41.667 0.00 0.00 38.70 2.50
5194 10162 5.888982 AGAACTGGAACAAGAAGAGGTTA 57.111 39.130 0.00 0.00 38.70 2.85
5195 10163 4.779993 AGAACTGGAACAAGAAGAGGTT 57.220 40.909 0.00 0.00 38.70 3.50
5196 10164 4.410555 AGAAGAACTGGAACAAGAAGAGGT 59.589 41.667 0.00 0.00 38.70 3.85
5197 10165 4.967036 AGAAGAACTGGAACAAGAAGAGG 58.033 43.478 0.00 0.00 38.70 3.69
5198 10166 8.614469 AATAAGAAGAACTGGAACAAGAAGAG 57.386 34.615 0.00 0.00 38.70 2.85
5199 10167 8.210946 TGAATAAGAAGAACTGGAACAAGAAGA 58.789 33.333 0.00 0.00 38.70 2.87
5200 10168 8.383318 TGAATAAGAAGAACTGGAACAAGAAG 57.617 34.615 0.00 0.00 38.70 2.85
5201 10169 7.445402 CCTGAATAAGAAGAACTGGAACAAGAA 59.555 37.037 0.00 0.00 38.70 2.52
5202 10170 6.936900 CCTGAATAAGAAGAACTGGAACAAGA 59.063 38.462 0.00 0.00 38.70 3.02
5203 10171 6.348868 GCCTGAATAAGAAGAACTGGAACAAG 60.349 42.308 0.00 0.00 38.70 3.16
5204 10172 5.473504 GCCTGAATAAGAAGAACTGGAACAA 59.526 40.000 0.00 0.00 38.70 2.83
5205 10173 5.003804 GCCTGAATAAGAAGAACTGGAACA 58.996 41.667 0.00 0.00 0.00 3.18
5206 10174 5.249420 AGCCTGAATAAGAAGAACTGGAAC 58.751 41.667 0.00 0.00 0.00 3.62
5207 10175 5.249393 AGAGCCTGAATAAGAAGAACTGGAA 59.751 40.000 0.00 0.00 0.00 3.53
5208 10176 4.780021 AGAGCCTGAATAAGAAGAACTGGA 59.220 41.667 0.00 0.00 0.00 3.86
5209 10177 5.096443 AGAGCCTGAATAAGAAGAACTGG 57.904 43.478 0.00 0.00 0.00 4.00
5210 10178 6.405538 AGAAGAGCCTGAATAAGAAGAACTG 58.594 40.000 0.00 0.00 0.00 3.16
5211 10179 6.619329 AGAAGAGCCTGAATAAGAAGAACT 57.381 37.500 0.00 0.00 0.00 3.01
5212 10180 6.652900 ACAAGAAGAGCCTGAATAAGAAGAAC 59.347 38.462 0.00 0.00 0.00 3.01
5213 10181 6.773638 ACAAGAAGAGCCTGAATAAGAAGAA 58.226 36.000 0.00 0.00 0.00 2.52
5214 10182 6.365970 ACAAGAAGAGCCTGAATAAGAAGA 57.634 37.500 0.00 0.00 0.00 2.87
5215 10183 6.093357 GGAACAAGAAGAGCCTGAATAAGAAG 59.907 42.308 0.00 0.00 0.00 2.85
5216 10184 5.940470 GGAACAAGAAGAGCCTGAATAAGAA 59.060 40.000 0.00 0.00 0.00 2.52
5217 10185 5.491982 GGAACAAGAAGAGCCTGAATAAGA 58.508 41.667 0.00 0.00 0.00 2.10
5218 10186 4.331168 CGGAACAAGAAGAGCCTGAATAAG 59.669 45.833 0.00 0.00 0.00 1.73
5219 10187 4.253685 CGGAACAAGAAGAGCCTGAATAA 58.746 43.478 0.00 0.00 0.00 1.40
5220 10188 3.369471 CCGGAACAAGAAGAGCCTGAATA 60.369 47.826 0.00 0.00 0.00 1.75
5221 10189 2.616510 CCGGAACAAGAAGAGCCTGAAT 60.617 50.000 0.00 0.00 0.00 2.57
5222 10190 1.270839 CCGGAACAAGAAGAGCCTGAA 60.271 52.381 0.00 0.00 0.00 3.02
5223 10191 0.321671 CCGGAACAAGAAGAGCCTGA 59.678 55.000 0.00 0.00 0.00 3.86
5224 10192 1.301677 GCCGGAACAAGAAGAGCCTG 61.302 60.000 5.05 0.00 0.00 4.85
5225 10193 1.003233 GCCGGAACAAGAAGAGCCT 60.003 57.895 5.05 0.00 0.00 4.58
5226 10194 1.003233 AGCCGGAACAAGAAGAGCC 60.003 57.895 5.05 0.00 0.00 4.70
5227 10195 0.320771 TGAGCCGGAACAAGAAGAGC 60.321 55.000 5.05 0.00 0.00 4.09
5228 10196 2.005451 CATGAGCCGGAACAAGAAGAG 58.995 52.381 5.05 0.00 0.00 2.85
5229 10197 1.945819 GCATGAGCCGGAACAAGAAGA 60.946 52.381 5.05 0.00 33.58 2.87
5230 10198 0.449388 GCATGAGCCGGAACAAGAAG 59.551 55.000 5.05 0.00 33.58 2.85
5231 10199 0.036732 AGCATGAGCCGGAACAAGAA 59.963 50.000 5.05 0.00 43.56 2.52
5232 10200 0.391661 GAGCATGAGCCGGAACAAGA 60.392 55.000 5.05 0.00 43.56 3.02
5233 10201 1.699656 CGAGCATGAGCCGGAACAAG 61.700 60.000 5.05 2.00 43.56 3.16
5234 10202 1.741401 CGAGCATGAGCCGGAACAA 60.741 57.895 5.05 0.00 43.56 2.83
5235 10203 2.125552 CGAGCATGAGCCGGAACA 60.126 61.111 5.05 4.17 43.56 3.18
5236 10204 1.696832 GAACGAGCATGAGCCGGAAC 61.697 60.000 5.05 0.00 43.56 3.62
5237 10205 1.447838 GAACGAGCATGAGCCGGAA 60.448 57.895 5.05 0.00 43.56 4.30
5238 10206 2.184322 GAACGAGCATGAGCCGGA 59.816 61.111 5.05 0.00 43.56 5.14
5239 10207 2.125552 TGAACGAGCATGAGCCGG 60.126 61.111 0.00 0.00 43.56 6.13
5240 10208 0.179137 TAGTGAACGAGCATGAGCCG 60.179 55.000 0.00 0.00 43.56 5.52
5241 10209 2.131183 GATAGTGAACGAGCATGAGCC 58.869 52.381 0.00 0.00 43.56 4.70
5242 10210 1.783711 CGATAGTGAACGAGCATGAGC 59.216 52.381 0.00 0.00 42.56 4.26
5243 10211 1.783711 GCGATAGTGAACGAGCATGAG 59.216 52.381 0.00 0.00 39.35 2.90
5244 10212 1.405463 AGCGATAGTGAACGAGCATGA 59.595 47.619 0.00 0.00 39.35 3.07
5245 10213 1.520174 CAGCGATAGTGAACGAGCATG 59.480 52.381 0.00 0.00 39.35 4.06
5246 10214 1.135139 ACAGCGATAGTGAACGAGCAT 59.865 47.619 0.00 0.00 39.35 3.79
5247 10215 0.526211 ACAGCGATAGTGAACGAGCA 59.474 50.000 0.00 0.00 39.35 4.26
5248 10216 1.192793 GACAGCGATAGTGAACGAGC 58.807 55.000 0.00 0.00 39.35 5.03
5249 10217 2.834574 AGACAGCGATAGTGAACGAG 57.165 50.000 0.00 0.00 39.35 4.18
5250 10218 3.268330 AGTAGACAGCGATAGTGAACGA 58.732 45.455 0.00 0.00 39.35 3.85
5251 10219 3.677190 AGTAGACAGCGATAGTGAACG 57.323 47.619 0.00 0.00 39.35 3.95
5252 10220 4.982999 TGAAGTAGACAGCGATAGTGAAC 58.017 43.478 0.00 0.00 39.35 3.18
5253 10221 5.638596 TTGAAGTAGACAGCGATAGTGAA 57.361 39.130 0.00 0.00 39.35 3.18
5254 10222 5.125578 ACATTGAAGTAGACAGCGATAGTGA 59.874 40.000 0.00 0.00 39.35 3.41
5255 10223 5.344066 ACATTGAAGTAGACAGCGATAGTG 58.656 41.667 0.00 0.00 39.35 2.74
5256 10224 5.584253 ACATTGAAGTAGACAGCGATAGT 57.416 39.130 0.00 0.00 39.35 2.12
5257 10225 6.198029 CAGAACATTGAAGTAGACAGCGATAG 59.802 42.308 0.00 0.00 0.00 2.08
5258 10226 6.036470 CAGAACATTGAAGTAGACAGCGATA 58.964 40.000 0.00 0.00 0.00 2.92
5259 10227 4.867047 CAGAACATTGAAGTAGACAGCGAT 59.133 41.667 0.00 0.00 0.00 4.58
5260 10228 4.237724 CAGAACATTGAAGTAGACAGCGA 58.762 43.478 0.00 0.00 0.00 4.93
5261 10229 4.574527 CAGAACATTGAAGTAGACAGCG 57.425 45.455 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.