Multiple sequence alignment - TraesCS7A01G226900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G226900 chr7A 100.000 2378 0 0 1 2378 197151371 197153748 0.000000e+00 4392.0
1 TraesCS7A01G226900 chr7A 80.060 662 115 10 2 648 14287761 14287102 2.140000e-130 475.0
2 TraesCS7A01G226900 chr7B 88.249 1770 146 26 4 1732 330957985 330956237 0.000000e+00 2060.0
3 TraesCS7A01G226900 chr7B 90.213 235 17 5 1965 2195 279832536 279832768 3.840000e-78 302.0
4 TraesCS7A01G226900 chr7B 94.595 74 2 2 1753 1824 330956243 330956170 1.930000e-21 113.0
5 TraesCS7A01G226900 chr7B 92.727 55 4 0 1837 1891 330956022 330955968 1.960000e-11 80.5
6 TraesCS7A01G226900 chr7D 91.787 901 44 11 727 1610 187259010 187258123 0.000000e+00 1227.0
7 TraesCS7A01G226900 chr7D 86.179 738 82 9 5 725 187267187 187266453 0.000000e+00 780.0
8 TraesCS7A01G226900 chr7D 80.477 671 116 9 1 657 249618482 249619151 1.270000e-137 499.0
9 TraesCS7A01G226900 chr7D 92.581 310 14 7 1646 1946 187258117 187257808 1.010000e-118 436.0
10 TraesCS7A01G226900 chr4A 95.012 421 18 2 1961 2378 152738306 152737886 0.000000e+00 658.0
11 TraesCS7A01G226900 chr6A 92.308 416 30 1 1965 2378 33410137 33409722 7.320000e-165 590.0
12 TraesCS7A01G226900 chr1B 82.186 668 103 9 5 657 667924104 667923438 5.740000e-156 560.0
13 TraesCS7A01G226900 chr3B 81.913 669 107 8 1 656 413967317 413966650 9.610000e-154 553.0
14 TraesCS7A01G226900 chr3B 86.119 353 32 6 1965 2308 726140409 726140753 4.830000e-97 364.0
15 TraesCS7A01G226900 chr5A 81.886 668 105 13 4 657 40464906 40464241 1.240000e-152 549.0
16 TraesCS7A01G226900 chr2D 94.817 328 14 2 1978 2303 432025969 432025643 2.110000e-140 508.0
17 TraesCS7A01G226900 chr2A 92.373 354 20 6 1965 2312 735576127 735575775 4.560000e-137 497.0
18 TraesCS7A01G226900 chr2A 84.923 325 32 13 1960 2272 536189425 536189744 1.770000e-81 313.0
19 TraesCS7A01G226900 chr2A 80.429 373 47 19 1966 2318 770399247 770398881 6.520000e-66 261.0
20 TraesCS7A01G226900 chr1D 79.881 671 116 15 4 660 77344188 77343523 7.690000e-130 473.0
21 TraesCS7A01G226900 chr5B 78.838 671 126 13 1 657 340535092 340534424 2.810000e-119 438.0
22 TraesCS7A01G226900 chr5B 92.694 219 11 4 1965 2178 65726573 65726355 6.380000e-81 311.0
23 TraesCS7A01G226900 chrUn 78.689 671 127 12 1 657 336520557 336519889 1.310000e-117 433.0
24 TraesCS7A01G226900 chr3A 96.087 230 9 0 2149 2378 103594133 103593904 2.230000e-100 375.0
25 TraesCS7A01G226900 chr6B 83.065 372 37 16 1959 2313 578558427 578558789 4.930000e-82 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G226900 chr7A 197151371 197153748 2377 False 4392.000000 4392 100.000 1 2378 1 chr7A.!!$F1 2377
1 TraesCS7A01G226900 chr7A 14287102 14287761 659 True 475.000000 475 80.060 2 648 1 chr7A.!!$R1 646
2 TraesCS7A01G226900 chr7B 330955968 330957985 2017 True 751.166667 2060 91.857 4 1891 3 chr7B.!!$R1 1887
3 TraesCS7A01G226900 chr7D 187257808 187259010 1202 True 831.500000 1227 92.184 727 1946 2 chr7D.!!$R2 1219
4 TraesCS7A01G226900 chr7D 187266453 187267187 734 True 780.000000 780 86.179 5 725 1 chr7D.!!$R1 720
5 TraesCS7A01G226900 chr7D 249618482 249619151 669 False 499.000000 499 80.477 1 657 1 chr7D.!!$F1 656
6 TraesCS7A01G226900 chr1B 667923438 667924104 666 True 560.000000 560 82.186 5 657 1 chr1B.!!$R1 652
7 TraesCS7A01G226900 chr3B 413966650 413967317 667 True 553.000000 553 81.913 1 656 1 chr3B.!!$R1 655
8 TraesCS7A01G226900 chr5A 40464241 40464906 665 True 549.000000 549 81.886 4 657 1 chr5A.!!$R1 653
9 TraesCS7A01G226900 chr1D 77343523 77344188 665 True 473.000000 473 79.881 4 660 1 chr1D.!!$R1 656
10 TraesCS7A01G226900 chr5B 340534424 340535092 668 True 438.000000 438 78.838 1 657 1 chr5B.!!$R2 656
11 TraesCS7A01G226900 chrUn 336519889 336520557 668 True 433.000000 433 78.689 1 657 1 chrUn.!!$R1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 893 0.037046 GGCTGTTTGGGCCTTGAATG 60.037 55.0 4.53 0.0 45.57 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2582 0.037232 GAGGGTTGGTGGTCTTCTCG 60.037 60.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.464452 GCCGGTGCAGTAGACCTAAT 59.536 55.000 1.90 0.00 37.47 1.73
82 85 0.110238 CACATGCACGCGTTTTAGCT 60.110 50.000 10.22 0.00 34.40 3.32
102 105 0.882042 GCCGCCATCATCATCGAACT 60.882 55.000 0.00 0.00 0.00 3.01
216 221 2.579787 CGTCCGTCCAGATGCGAC 60.580 66.667 0.00 0.00 0.00 5.19
242 247 3.447229 TCTGGAAGATCTGTCATGCGTAA 59.553 43.478 0.00 0.00 38.67 3.18
357 365 0.979665 CCTCTGCCTCTGTCTTCCAA 59.020 55.000 0.00 0.00 0.00 3.53
398 414 0.511221 CCAAAACGACACCGCAGTAG 59.489 55.000 0.00 0.00 39.95 2.57
445 463 5.059833 CAGATCCTAAGATTTTTCCGGAGG 58.940 45.833 3.34 0.00 41.07 4.30
458 476 2.680352 GGAGGAGCACGAGTGGGA 60.680 66.667 5.32 0.00 0.00 4.37
467 485 0.594602 CACGAGTGGGACGACAGTAA 59.405 55.000 0.00 0.00 34.70 2.24
479 499 5.815740 GGGACGACAGTAATTACAATGATGT 59.184 40.000 17.65 11.97 43.74 3.06
481 501 6.018994 GGACGACAGTAATTACAATGATGTCC 60.019 42.308 22.06 22.06 41.05 4.02
519 539 4.235762 AACGCCGCCATCGCCTAT 62.236 61.111 0.00 0.00 0.00 2.57
544 564 1.737793 GGCTCGATTTTCACCGACAAT 59.262 47.619 0.00 0.00 0.00 2.71
618 638 1.599047 CCAGCTTCAGACCGACCAT 59.401 57.895 0.00 0.00 0.00 3.55
634 655 2.621998 GACCATCCCGACGAAAGAGATA 59.378 50.000 0.00 0.00 0.00 1.98
682 716 2.054140 TTTTTGAAAGCGCGCCGTCT 62.054 50.000 30.33 9.84 0.00 4.18
813 847 3.455469 GATTGCCTGCACCTGGCC 61.455 66.667 12.53 0.00 45.86 5.36
859 893 0.037046 GGCTGTTTGGGCCTTGAATG 60.037 55.000 4.53 0.00 45.57 2.67
863 897 0.681175 GTTTGGGCCTTGAATGCACT 59.319 50.000 4.53 0.00 31.89 4.40
911 945 0.179129 TGTTACCTAAGCTACCGCGC 60.179 55.000 0.00 0.00 42.32 6.86
912 946 1.064621 TTACCTAAGCTACCGCGCG 59.935 57.895 25.67 25.67 42.32 6.86
913 947 2.941964 TTACCTAAGCTACCGCGCGC 62.942 60.000 27.36 23.91 42.32 6.86
956 990 1.875813 GCGACAGCAGATCGAGTGG 60.876 63.158 8.28 0.00 42.25 4.00
1112 1147 1.493311 CGCCGAGCTGAGTTGTTTC 59.507 57.895 0.00 0.00 0.00 2.78
1192 1229 2.091098 TATAGCTAACCTTGCCCGGA 57.909 50.000 0.73 0.00 0.00 5.14
1200 1239 3.499737 CTTGCCCGGACGATGTGC 61.500 66.667 0.73 0.00 0.00 4.57
1233 1275 0.609131 TGCTGCAGGTAAAGAAGGCC 60.609 55.000 17.12 0.00 0.00 5.19
1299 1341 2.268076 GGACCGCATGCACAAGGTT 61.268 57.895 19.57 1.62 37.07 3.50
1300 1342 0.958382 GGACCGCATGCACAAGGTTA 60.958 55.000 19.57 0.00 37.07 2.85
1431 1489 3.084786 AGTAGTAGCGTAACCTCGGTTT 58.915 45.455 6.65 0.00 41.64 3.27
1504 1562 4.864633 TCGATTCGATCCTTCATCTTCTG 58.135 43.478 4.29 0.00 0.00 3.02
1516 1574 7.000472 TCCTTCATCTTCTGGGCTTATAAATG 59.000 38.462 0.00 0.00 0.00 2.32
1522 1580 5.532406 TCTTCTGGGCTTATAAATGTGATGC 59.468 40.000 0.00 0.00 0.00 3.91
1544 1602 1.067706 TCGAAAAATGCGACCCGTCTA 60.068 47.619 0.00 0.00 32.09 2.59
1548 1606 3.530265 AAAATGCGACCCGTCTACATA 57.470 42.857 0.00 0.00 0.00 2.29
1557 1615 4.064388 GACCCGTCTACATAGTCCTCTAC 58.936 52.174 0.00 0.00 0.00 2.59
1611 1669 4.510711 CAGGTCTATTGTGATGATGTCTGC 59.489 45.833 0.00 0.00 0.00 4.26
1614 1672 5.587844 GGTCTATTGTGATGATGTCTGCTTT 59.412 40.000 0.00 0.00 0.00 3.51
1615 1673 6.763135 GGTCTATTGTGATGATGTCTGCTTTA 59.237 38.462 0.00 0.00 0.00 1.85
1616 1674 7.443575 GGTCTATTGTGATGATGTCTGCTTTAT 59.556 37.037 0.00 0.00 0.00 1.40
1617 1675 8.494347 GTCTATTGTGATGATGTCTGCTTTATC 58.506 37.037 0.00 0.00 0.00 1.75
1618 1676 8.427276 TCTATTGTGATGATGTCTGCTTTATCT 58.573 33.333 0.00 0.00 0.00 1.98
1619 1677 7.876936 ATTGTGATGATGTCTGCTTTATCTT 57.123 32.000 0.00 0.00 0.00 2.40
1622 1680 7.755591 TGTGATGATGTCTGCTTTATCTTTTC 58.244 34.615 0.00 0.00 0.00 2.29
1628 1686 8.725148 TGATGTCTGCTTTATCTTTTCTTCTTC 58.275 33.333 0.00 0.00 0.00 2.87
1642 1700 8.499162 TCTTTTCTTCTTCTCTTTTGCTAATCG 58.501 33.333 0.00 0.00 0.00 3.34
1643 1701 7.962964 TTTCTTCTTCTCTTTTGCTAATCGA 57.037 32.000 0.00 0.00 0.00 3.59
1644 1702 8.553459 TTTCTTCTTCTCTTTTGCTAATCGAT 57.447 30.769 0.00 0.00 0.00 3.59
1688 1747 1.206523 GGGCTACGTTCTGTAATCGC 58.793 55.000 0.00 0.00 31.20 4.58
1735 1794 4.449391 CCGACCGGTGTTTGAAGT 57.551 55.556 14.63 0.00 0.00 3.01
1736 1795 2.697819 CCGACCGGTGTTTGAAGTT 58.302 52.632 14.63 0.00 0.00 2.66
1737 1796 1.018910 CCGACCGGTGTTTGAAGTTT 58.981 50.000 14.63 0.00 0.00 2.66
1738 1797 1.402613 CCGACCGGTGTTTGAAGTTTT 59.597 47.619 14.63 0.00 0.00 2.43
1739 1798 2.159352 CCGACCGGTGTTTGAAGTTTTT 60.159 45.455 14.63 0.00 0.00 1.94
1740 1799 2.849473 CGACCGGTGTTTGAAGTTTTTG 59.151 45.455 14.63 0.00 0.00 2.44
1741 1800 3.183754 GACCGGTGTTTGAAGTTTTTGG 58.816 45.455 14.63 0.00 0.00 3.28
1742 1801 2.563620 ACCGGTGTTTGAAGTTTTTGGT 59.436 40.909 6.12 0.00 0.00 3.67
1743 1802 3.183754 CCGGTGTTTGAAGTTTTTGGTC 58.816 45.455 0.00 0.00 0.00 4.02
1744 1803 3.367498 CCGGTGTTTGAAGTTTTTGGTCA 60.367 43.478 0.00 0.00 0.00 4.02
1745 1804 4.429108 CGGTGTTTGAAGTTTTTGGTCAT 58.571 39.130 0.00 0.00 0.00 3.06
1746 1805 4.867608 CGGTGTTTGAAGTTTTTGGTCATT 59.132 37.500 0.00 0.00 0.00 2.57
1747 1806 5.220378 CGGTGTTTGAAGTTTTTGGTCATTG 60.220 40.000 0.00 0.00 0.00 2.82
1748 1807 5.641636 GGTGTTTGAAGTTTTTGGTCATTGT 59.358 36.000 0.00 0.00 0.00 2.71
1749 1808 6.402011 GGTGTTTGAAGTTTTTGGTCATTGTG 60.402 38.462 0.00 0.00 0.00 3.33
1750 1809 6.147000 GTGTTTGAAGTTTTTGGTCATTGTGT 59.853 34.615 0.00 0.00 0.00 3.72
1751 1810 6.708054 TGTTTGAAGTTTTTGGTCATTGTGTT 59.292 30.769 0.00 0.00 0.00 3.32
1752 1811 6.718454 TTGAAGTTTTTGGTCATTGTGTTG 57.282 33.333 0.00 0.00 0.00 3.33
1753 1812 5.788450 TGAAGTTTTTGGTCATTGTGTTGT 58.212 33.333 0.00 0.00 0.00 3.32
1754 1813 5.636965 TGAAGTTTTTGGTCATTGTGTTGTG 59.363 36.000 0.00 0.00 0.00 3.33
1786 1876 4.081365 TGCAGGGATCAACACTCGTATAAA 60.081 41.667 0.00 0.00 0.00 1.40
1801 1891 7.851963 CACTCGTATAAAAAGTTTTTCAACCGA 59.148 33.333 16.65 16.81 32.70 4.69
1826 2006 3.105937 GTGTTCGAAGTTTTTGTCAGGC 58.894 45.455 0.00 0.00 0.00 4.85
1883 2110 5.354234 GCACGGATGAAGAAGGATTTTTCTA 59.646 40.000 0.00 0.00 36.42 2.10
1917 2144 2.342910 TCGGAGCGTTTTCTGTACTC 57.657 50.000 0.00 0.00 0.00 2.59
1918 2145 1.068055 TCGGAGCGTTTTCTGTACTCC 60.068 52.381 0.00 0.00 42.89 3.85
1946 2175 5.338632 TGTGTAGAGAAATCCAAGGAGGTA 58.661 41.667 0.00 0.00 39.02 3.08
1947 2176 5.187186 TGTGTAGAGAAATCCAAGGAGGTAC 59.813 44.000 0.00 0.00 39.02 3.34
1948 2177 5.187186 GTGTAGAGAAATCCAAGGAGGTACA 59.813 44.000 0.00 0.00 39.02 2.90
1949 2178 5.422331 TGTAGAGAAATCCAAGGAGGTACAG 59.578 44.000 0.00 0.00 39.02 2.74
1950 2179 3.777522 AGAGAAATCCAAGGAGGTACAGG 59.222 47.826 0.00 0.00 39.02 4.00
1951 2180 3.775316 GAGAAATCCAAGGAGGTACAGGA 59.225 47.826 0.00 0.00 39.02 3.86
1952 2181 4.375313 AGAAATCCAAGGAGGTACAGGAT 58.625 43.478 0.00 0.00 40.66 3.24
1953 2182 4.164988 AGAAATCCAAGGAGGTACAGGATG 59.835 45.833 0.00 0.00 38.98 3.51
1954 2183 2.642171 TCCAAGGAGGTACAGGATGT 57.358 50.000 0.00 0.00 45.57 3.06
1955 2184 2.187958 TCCAAGGAGGTACAGGATGTG 58.812 52.381 0.00 0.00 43.86 3.21
1956 2185 2.494627 TCCAAGGAGGTACAGGATGTGT 60.495 50.000 0.00 0.00 43.86 3.72
1957 2186 4.017480 TCCAAGGAGGTACAGGATGTGTT 61.017 47.826 0.00 0.00 43.86 3.32
1958 2187 5.496149 TCCAAGGAGGTACAGGATGTGTTT 61.496 45.833 0.00 0.00 43.86 2.83
1959 2188 7.265129 TCCAAGGAGGTACAGGATGTGTTTC 62.265 48.000 0.00 0.00 43.86 2.78
1973 2202 8.569641 CAGGATGTGTTTCTACTATCTACTACC 58.430 40.741 0.00 0.00 0.00 3.18
1974 2203 8.280084 AGGATGTGTTTCTACTATCTACTACCA 58.720 37.037 0.00 0.00 0.00 3.25
1975 2204 8.351461 GGATGTGTTTCTACTATCTACTACCAC 58.649 40.741 0.00 0.00 0.00 4.16
1976 2205 9.122779 GATGTGTTTCTACTATCTACTACCACT 57.877 37.037 0.00 0.00 0.00 4.00
1993 2222 8.080363 ACTACCACTATAAAAGAAAGAGAGGG 57.920 38.462 0.00 0.00 0.00 4.30
1994 2223 5.746284 ACCACTATAAAAGAAAGAGAGGGC 58.254 41.667 0.00 0.00 0.00 5.19
1995 2224 4.811557 CCACTATAAAAGAAAGAGAGGGCG 59.188 45.833 0.00 0.00 0.00 6.13
1996 2225 4.811557 CACTATAAAAGAAAGAGAGGGCGG 59.188 45.833 0.00 0.00 0.00 6.13
1997 2226 4.715297 ACTATAAAAGAAAGAGAGGGCGGA 59.285 41.667 0.00 0.00 0.00 5.54
1998 2227 2.481289 AAAAGAAAGAGAGGGCGGAG 57.519 50.000 0.00 0.00 0.00 4.63
1999 2228 1.645710 AAAGAAAGAGAGGGCGGAGA 58.354 50.000 0.00 0.00 0.00 3.71
2000 2229 1.645710 AAGAAAGAGAGGGCGGAGAA 58.354 50.000 0.00 0.00 0.00 2.87
2001 2230 0.899019 AGAAAGAGAGGGCGGAGAAC 59.101 55.000 0.00 0.00 0.00 3.01
2002 2231 0.108089 GAAAGAGAGGGCGGAGAACC 60.108 60.000 0.00 0.00 0.00 3.62
2008 2237 2.506472 GGGCGGAGAACCCTCATC 59.494 66.667 0.00 0.00 44.68 2.92
2009 2238 2.506472 GGCGGAGAACCCTCATCC 59.494 66.667 0.00 0.00 41.20 3.51
2010 2239 2.066999 GGCGGAGAACCCTCATCCT 61.067 63.158 0.00 0.00 41.20 3.24
2011 2240 0.759436 GGCGGAGAACCCTCATCCTA 60.759 60.000 0.00 0.00 41.20 2.94
2012 2241 1.343069 GCGGAGAACCCTCATCCTAT 58.657 55.000 0.00 0.00 41.20 2.57
2013 2242 1.694696 GCGGAGAACCCTCATCCTATT 59.305 52.381 0.00 0.00 41.20 1.73
2014 2243 2.289133 GCGGAGAACCCTCATCCTATTC 60.289 54.545 0.00 0.00 41.20 1.75
2015 2244 2.029828 CGGAGAACCCTCATCCTATTCG 60.030 54.545 0.00 0.00 41.20 3.34
2016 2245 2.966516 GGAGAACCCTCATCCTATTCGT 59.033 50.000 0.00 0.00 41.20 3.85
2017 2246 3.006003 GGAGAACCCTCATCCTATTCGTC 59.994 52.174 0.00 0.00 41.20 4.20
2018 2247 2.623889 AGAACCCTCATCCTATTCGTCG 59.376 50.000 0.00 0.00 0.00 5.12
2019 2248 2.359981 ACCCTCATCCTATTCGTCGA 57.640 50.000 0.00 0.00 0.00 4.20
2020 2249 2.662866 ACCCTCATCCTATTCGTCGAA 58.337 47.619 10.61 10.61 0.00 3.71
2021 2250 3.028850 ACCCTCATCCTATTCGTCGAAA 58.971 45.455 12.40 0.00 0.00 3.46
2022 2251 3.181478 ACCCTCATCCTATTCGTCGAAAC 60.181 47.826 12.40 0.00 0.00 2.78
2023 2252 3.381949 CCTCATCCTATTCGTCGAAACC 58.618 50.000 12.40 0.00 0.00 3.27
2024 2253 3.068307 CCTCATCCTATTCGTCGAAACCT 59.932 47.826 12.40 0.00 0.00 3.50
2025 2254 4.041740 TCATCCTATTCGTCGAAACCTG 57.958 45.455 12.40 6.01 0.00 4.00
2026 2255 2.288961 TCCTATTCGTCGAAACCTGC 57.711 50.000 12.40 0.00 0.00 4.85
2027 2256 1.546923 TCCTATTCGTCGAAACCTGCA 59.453 47.619 12.40 0.00 0.00 4.41
2028 2257 2.028839 TCCTATTCGTCGAAACCTGCAA 60.029 45.455 12.40 0.00 0.00 4.08
2029 2258 2.936498 CCTATTCGTCGAAACCTGCAAT 59.064 45.455 12.40 0.00 0.00 3.56
2030 2259 3.001330 CCTATTCGTCGAAACCTGCAATC 59.999 47.826 12.40 0.00 0.00 2.67
2031 2260 2.163818 TTCGTCGAAACCTGCAATCT 57.836 45.000 4.91 0.00 0.00 2.40
2032 2261 1.428448 TCGTCGAAACCTGCAATCTG 58.572 50.000 0.00 0.00 0.00 2.90
2033 2262 1.000394 TCGTCGAAACCTGCAATCTGA 60.000 47.619 0.00 0.00 0.00 3.27
2034 2263 2.002586 CGTCGAAACCTGCAATCTGAT 58.997 47.619 0.00 0.00 0.00 2.90
2035 2264 2.222886 CGTCGAAACCTGCAATCTGATG 60.223 50.000 0.00 0.00 0.00 3.07
2036 2265 2.096496 GTCGAAACCTGCAATCTGATGG 59.904 50.000 0.00 0.00 0.00 3.51
2037 2266 2.086869 CGAAACCTGCAATCTGATGGT 58.913 47.619 0.00 0.00 0.00 3.55
2038 2267 2.096496 CGAAACCTGCAATCTGATGGTC 59.904 50.000 0.00 0.00 0.00 4.02
2039 2268 3.350833 GAAACCTGCAATCTGATGGTCT 58.649 45.455 0.00 0.00 0.00 3.85
2040 2269 4.517285 GAAACCTGCAATCTGATGGTCTA 58.483 43.478 0.00 0.00 0.00 2.59
2041 2270 3.550437 ACCTGCAATCTGATGGTCTAC 57.450 47.619 0.00 0.00 0.00 2.59
2042 2271 2.840038 ACCTGCAATCTGATGGTCTACA 59.160 45.455 0.00 0.00 0.00 2.74
2043 2272 3.457380 ACCTGCAATCTGATGGTCTACAT 59.543 43.478 0.00 0.00 44.18 2.29
2052 2281 1.428869 ATGGTCTACATCCCTCCAGC 58.571 55.000 0.00 0.00 33.53 4.85
2053 2282 0.042581 TGGTCTACATCCCTCCAGCA 59.957 55.000 0.00 0.00 0.00 4.41
2054 2283 1.344393 TGGTCTACATCCCTCCAGCAT 60.344 52.381 0.00 0.00 0.00 3.79
2055 2284 2.090775 TGGTCTACATCCCTCCAGCATA 60.091 50.000 0.00 0.00 0.00 3.14
2056 2285 2.300437 GGTCTACATCCCTCCAGCATAC 59.700 54.545 0.00 0.00 0.00 2.39
2057 2286 3.235200 GTCTACATCCCTCCAGCATACT 58.765 50.000 0.00 0.00 0.00 2.12
2058 2287 4.408276 GTCTACATCCCTCCAGCATACTA 58.592 47.826 0.00 0.00 0.00 1.82
2059 2288 4.833380 GTCTACATCCCTCCAGCATACTAA 59.167 45.833 0.00 0.00 0.00 2.24
2060 2289 5.304614 GTCTACATCCCTCCAGCATACTAAA 59.695 44.000 0.00 0.00 0.00 1.85
2061 2290 6.014156 GTCTACATCCCTCCAGCATACTAAAT 60.014 42.308 0.00 0.00 0.00 1.40
2062 2291 4.978099 ACATCCCTCCAGCATACTAAATG 58.022 43.478 0.00 0.00 0.00 2.32
2063 2292 3.492102 TCCCTCCAGCATACTAAATGC 57.508 47.619 1.74 1.74 44.85 3.56
2087 2316 6.544622 CGTTTTACGCTTTAATTACCCATCA 58.455 36.000 0.00 0.00 33.65 3.07
2088 2317 7.190871 CGTTTTACGCTTTAATTACCCATCAT 58.809 34.615 0.00 0.00 33.65 2.45
2089 2318 7.698970 CGTTTTACGCTTTAATTACCCATCATT 59.301 33.333 0.00 0.00 33.65 2.57
2090 2319 8.803799 GTTTTACGCTTTAATTACCCATCATTG 58.196 33.333 0.00 0.00 0.00 2.82
2091 2320 4.932146 ACGCTTTAATTACCCATCATTGC 58.068 39.130 0.00 0.00 0.00 3.56
2092 2321 4.202111 ACGCTTTAATTACCCATCATTGCC 60.202 41.667 0.00 0.00 0.00 4.52
2093 2322 4.202101 CGCTTTAATTACCCATCATTGCCA 60.202 41.667 0.00 0.00 0.00 4.92
2094 2323 5.509501 CGCTTTAATTACCCATCATTGCCAT 60.510 40.000 0.00 0.00 0.00 4.40
2095 2324 6.290605 GCTTTAATTACCCATCATTGCCATT 58.709 36.000 0.00 0.00 0.00 3.16
2096 2325 7.441017 GCTTTAATTACCCATCATTGCCATTA 58.559 34.615 0.00 0.00 0.00 1.90
2097 2326 7.384932 GCTTTAATTACCCATCATTGCCATTAC 59.615 37.037 0.00 0.00 0.00 1.89
2098 2327 8.546083 TTTAATTACCCATCATTGCCATTACT 57.454 30.769 0.00 0.00 0.00 2.24
2099 2328 8.546083 TTAATTACCCATCATTGCCATTACTT 57.454 30.769 0.00 0.00 0.00 2.24
2100 2329 9.647918 TTAATTACCCATCATTGCCATTACTTA 57.352 29.630 0.00 0.00 0.00 2.24
2101 2330 8.546083 AATTACCCATCATTGCCATTACTTAA 57.454 30.769 0.00 0.00 0.00 1.85
2102 2331 8.725606 ATTACCCATCATTGCCATTACTTAAT 57.274 30.769 0.00 0.00 0.00 1.40
2103 2332 8.546083 TTACCCATCATTGCCATTACTTAATT 57.454 30.769 0.00 0.00 0.00 1.40
2104 2333 9.647918 TTACCCATCATTGCCATTACTTAATTA 57.352 29.630 0.00 0.00 0.00 1.40
2105 2334 8.546083 ACCCATCATTGCCATTACTTAATTAA 57.454 30.769 0.00 0.00 0.00 1.40
2106 2335 9.158097 ACCCATCATTGCCATTACTTAATTAAT 57.842 29.630 0.00 0.00 0.00 1.40
2130 2359 4.484537 CCAATCATTGCCATTGGGTTAA 57.515 40.909 4.53 0.00 44.67 2.01
2131 2360 4.190772 CCAATCATTGCCATTGGGTTAAC 58.809 43.478 4.53 0.00 44.67 2.01
2132 2361 4.323333 CCAATCATTGCCATTGGGTTAACA 60.323 41.667 8.10 0.00 44.67 2.41
2133 2362 5.430007 CAATCATTGCCATTGGGTTAACAT 58.570 37.500 8.10 0.00 36.17 2.71
2134 2363 4.734398 TCATTGCCATTGGGTTAACATC 57.266 40.909 8.10 0.00 36.17 3.06
2135 2364 3.130164 TCATTGCCATTGGGTTAACATCG 59.870 43.478 8.10 0.00 36.17 3.84
2136 2365 2.208132 TGCCATTGGGTTAACATCGT 57.792 45.000 8.10 0.00 36.17 3.73
2137 2366 2.520069 TGCCATTGGGTTAACATCGTT 58.480 42.857 8.10 0.00 36.17 3.85
2138 2367 2.490115 TGCCATTGGGTTAACATCGTTC 59.510 45.455 8.10 0.00 36.17 3.95
2139 2368 2.159296 GCCATTGGGTTAACATCGTTCC 60.159 50.000 8.10 0.00 36.17 3.62
2140 2369 2.425668 CCATTGGGTTAACATCGTTCCC 59.574 50.000 8.10 0.00 38.68 3.97
2141 2370 2.203470 TTGGGTTAACATCGTTCCCC 57.797 50.000 8.10 7.32 37.52 4.81
2142 2371 0.036199 TGGGTTAACATCGTTCCCCG 60.036 55.000 8.10 0.00 37.52 5.73
2150 2379 3.673484 TCGTTCCCCGACCACGTC 61.673 66.667 0.00 0.00 41.60 4.34
2159 2388 4.131088 GACCACGTCGCTCCCCTC 62.131 72.222 0.00 0.00 0.00 4.30
2160 2389 4.680537 ACCACGTCGCTCCCCTCT 62.681 66.667 0.00 0.00 0.00 3.69
2161 2390 2.439701 CCACGTCGCTCCCCTCTA 60.440 66.667 0.00 0.00 0.00 2.43
2162 2391 2.772691 CCACGTCGCTCCCCTCTAC 61.773 68.421 0.00 0.00 0.00 2.59
2163 2392 2.439883 ACGTCGCTCCCCTCTACC 60.440 66.667 0.00 0.00 0.00 3.18
2164 2393 3.217743 CGTCGCTCCCCTCTACCC 61.218 72.222 0.00 0.00 0.00 3.69
2165 2394 2.279408 GTCGCTCCCCTCTACCCT 59.721 66.667 0.00 0.00 0.00 4.34
2166 2395 1.829096 GTCGCTCCCCTCTACCCTC 60.829 68.421 0.00 0.00 0.00 4.30
2167 2396 2.279073 CGCTCCCCTCTACCCTCA 59.721 66.667 0.00 0.00 0.00 3.86
2168 2397 2.128507 CGCTCCCCTCTACCCTCAC 61.129 68.421 0.00 0.00 0.00 3.51
2169 2398 2.128507 GCTCCCCTCTACCCTCACG 61.129 68.421 0.00 0.00 0.00 4.35
2170 2399 2.043248 TCCCCTCTACCCTCACGC 60.043 66.667 0.00 0.00 0.00 5.34
2171 2400 2.363795 CCCCTCTACCCTCACGCA 60.364 66.667 0.00 0.00 0.00 5.24
2172 2401 1.987855 CCCCTCTACCCTCACGCAA 60.988 63.158 0.00 0.00 0.00 4.85
2173 2402 1.218316 CCCTCTACCCTCACGCAAC 59.782 63.158 0.00 0.00 0.00 4.17
2174 2403 1.218316 CCTCTACCCTCACGCAACC 59.782 63.158 0.00 0.00 0.00 3.77
2175 2404 1.541310 CCTCTACCCTCACGCAACCA 61.541 60.000 0.00 0.00 0.00 3.67
2176 2405 0.108615 CTCTACCCTCACGCAACCAG 60.109 60.000 0.00 0.00 0.00 4.00
2177 2406 1.741770 CTACCCTCACGCAACCAGC 60.742 63.158 0.00 0.00 40.87 4.85
2178 2407 2.449031 CTACCCTCACGCAACCAGCA 62.449 60.000 0.00 0.00 46.13 4.41
2179 2408 2.046009 TACCCTCACGCAACCAGCAA 62.046 55.000 0.00 0.00 46.13 3.91
2180 2409 1.973281 CCCTCACGCAACCAGCAAT 60.973 57.895 0.00 0.00 46.13 3.56
2181 2410 1.526575 CCCTCACGCAACCAGCAATT 61.527 55.000 0.00 0.00 46.13 2.32
2182 2411 0.314935 CCTCACGCAACCAGCAATTT 59.685 50.000 0.00 0.00 46.13 1.82
2183 2412 1.269726 CCTCACGCAACCAGCAATTTT 60.270 47.619 0.00 0.00 46.13 1.82
2184 2413 1.788308 CTCACGCAACCAGCAATTTTG 59.212 47.619 0.00 0.00 46.13 2.44
2185 2414 0.860533 CACGCAACCAGCAATTTTGG 59.139 50.000 4.54 4.54 46.13 3.28
2186 2415 0.879839 ACGCAACCAGCAATTTTGGC 60.880 50.000 5.79 0.00 46.13 4.52
2187 2416 0.879400 CGCAACCAGCAATTTTGGCA 60.879 50.000 5.79 0.00 46.13 4.92
2188 2417 0.587768 GCAACCAGCAATTTTGGCAC 59.412 50.000 5.79 0.00 44.79 5.01
2189 2418 1.228533 CAACCAGCAATTTTGGCACC 58.771 50.000 5.79 0.00 39.39 5.01
2190 2419 0.249826 AACCAGCAATTTTGGCACCG 60.250 50.000 5.79 0.00 39.39 4.94
2191 2420 2.028733 CCAGCAATTTTGGCACCGC 61.029 57.895 0.00 0.00 0.00 5.68
2214 2443 4.148825 CCCTCGTCCGCCCTCTTG 62.149 72.222 0.00 0.00 0.00 3.02
2215 2444 4.821589 CCTCGTCCGCCCTCTTGC 62.822 72.222 0.00 0.00 0.00 4.01
2216 2445 3.764466 CTCGTCCGCCCTCTTGCT 61.764 66.667 0.00 0.00 0.00 3.91
2217 2446 3.997064 CTCGTCCGCCCTCTTGCTG 62.997 68.421 0.00 0.00 0.00 4.41
2219 2448 4.704833 GTCCGCCCTCTTGCTGCA 62.705 66.667 0.00 0.00 0.00 4.41
2220 2449 3.952508 TCCGCCCTCTTGCTGCAA 61.953 61.111 15.16 15.16 0.00 4.08
2221 2450 3.741476 CCGCCCTCTTGCTGCAAC 61.741 66.667 11.69 0.15 0.00 4.17
2222 2451 3.741476 CGCCCTCTTGCTGCAACC 61.741 66.667 11.69 0.00 0.00 3.77
2223 2452 3.741476 GCCCTCTTGCTGCAACCG 61.741 66.667 11.69 2.94 0.00 4.44
2224 2453 3.741476 CCCTCTTGCTGCAACCGC 61.741 66.667 11.69 0.00 39.24 5.68
2225 2454 4.093952 CCTCTTGCTGCAACCGCG 62.094 66.667 11.69 0.00 42.97 6.46
2226 2455 4.748679 CTCTTGCTGCAACCGCGC 62.749 66.667 11.69 0.00 42.97 6.86
2267 2496 4.452733 GGAGAACCTCCGCCCGTG 62.453 72.222 0.00 0.00 41.08 4.94
2328 2557 4.394712 CGCTCCGGGCTTCCTGTT 62.395 66.667 0.00 0.00 39.13 3.16
2329 2558 2.747855 GCTCCGGGCTTCCTGTTG 60.748 66.667 0.00 0.00 38.06 3.33
2330 2559 3.068881 CTCCGGGCTTCCTGTTGA 58.931 61.111 0.00 0.00 0.00 3.18
2331 2560 1.604378 CTCCGGGCTTCCTGTTGAT 59.396 57.895 0.00 0.00 0.00 2.57
2332 2561 0.830648 CTCCGGGCTTCCTGTTGATA 59.169 55.000 0.00 0.00 0.00 2.15
2333 2562 1.209504 CTCCGGGCTTCCTGTTGATAA 59.790 52.381 0.00 0.00 0.00 1.75
2334 2563 1.631388 TCCGGGCTTCCTGTTGATAAA 59.369 47.619 0.00 0.00 0.00 1.40
2335 2564 1.743394 CCGGGCTTCCTGTTGATAAAC 59.257 52.381 0.00 0.00 0.00 2.01
2336 2565 2.618045 CCGGGCTTCCTGTTGATAAACT 60.618 50.000 0.00 0.00 0.00 2.66
2337 2566 2.678336 CGGGCTTCCTGTTGATAAACTC 59.322 50.000 0.00 0.00 0.00 3.01
2338 2567 2.678336 GGGCTTCCTGTTGATAAACTCG 59.322 50.000 0.00 0.00 0.00 4.18
2339 2568 3.596214 GGCTTCCTGTTGATAAACTCGA 58.404 45.455 0.00 0.00 0.00 4.04
2340 2569 4.000988 GGCTTCCTGTTGATAAACTCGAA 58.999 43.478 0.00 0.00 0.00 3.71
2341 2570 4.093556 GGCTTCCTGTTGATAAACTCGAAG 59.906 45.833 13.99 13.99 34.54 3.79
2342 2571 4.093556 GCTTCCTGTTGATAAACTCGAAGG 59.906 45.833 17.47 7.41 33.30 3.46
2343 2572 3.596214 TCCTGTTGATAAACTCGAAGGC 58.404 45.455 0.00 0.00 0.00 4.35
2344 2573 2.678336 CCTGTTGATAAACTCGAAGGCC 59.322 50.000 0.00 0.00 0.00 5.19
2345 2574 2.343101 TGTTGATAAACTCGAAGGCCG 58.657 47.619 0.00 0.00 40.25 6.13
2346 2575 1.062148 GTTGATAAACTCGAAGGCCGC 59.938 52.381 0.00 0.00 38.37 6.53
2347 2576 0.804544 TGATAAACTCGAAGGCCGCG 60.805 55.000 13.90 13.90 38.37 6.46
2348 2577 1.488261 GATAAACTCGAAGGCCGCGG 61.488 60.000 24.05 24.05 38.37 6.46
2349 2578 1.952102 ATAAACTCGAAGGCCGCGGA 61.952 55.000 33.48 5.32 38.37 5.54
2350 2579 2.157305 TAAACTCGAAGGCCGCGGAA 62.157 55.000 33.48 4.89 38.37 4.30
2351 2580 2.999739 AAACTCGAAGGCCGCGGAAA 63.000 55.000 33.48 5.30 38.37 3.13
2352 2581 2.740826 CTCGAAGGCCGCGGAAAA 60.741 61.111 33.48 6.10 38.37 2.29
2353 2582 3.023591 CTCGAAGGCCGCGGAAAAC 62.024 63.158 33.48 15.60 38.37 2.43
2366 2595 2.249844 GGAAAACGAGAAGACCACCA 57.750 50.000 0.00 0.00 0.00 4.17
2367 2596 2.567985 GGAAAACGAGAAGACCACCAA 58.432 47.619 0.00 0.00 0.00 3.67
2368 2597 2.289820 GGAAAACGAGAAGACCACCAAC 59.710 50.000 0.00 0.00 0.00 3.77
2369 2598 1.963172 AAACGAGAAGACCACCAACC 58.037 50.000 0.00 0.00 0.00 3.77
2370 2599 0.108019 AACGAGAAGACCACCAACCC 59.892 55.000 0.00 0.00 0.00 4.11
2371 2600 0.763223 ACGAGAAGACCACCAACCCT 60.763 55.000 0.00 0.00 0.00 4.34
2372 2601 0.037232 CGAGAAGACCACCAACCCTC 60.037 60.000 0.00 0.00 0.00 4.30
2373 2602 0.325272 GAGAAGACCACCAACCCTCC 59.675 60.000 0.00 0.00 0.00 4.30
2374 2603 0.104409 AGAAGACCACCAACCCTCCT 60.104 55.000 0.00 0.00 0.00 3.69
2375 2604 0.325272 GAAGACCACCAACCCTCCTC 59.675 60.000 0.00 0.00 0.00 3.71
2376 2605 0.104409 AAGACCACCAACCCTCCTCT 60.104 55.000 0.00 0.00 0.00 3.69
2377 2606 0.838122 AGACCACCAACCCTCCTCTG 60.838 60.000 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.649096 GTGCATGTGGTGTACGCA 58.351 55.556 8.97 0.00 44.94 5.24
82 85 1.145819 TTCGATGATGATGGCGGCA 59.854 52.632 16.34 16.34 0.00 5.69
102 105 2.568956 CTCTCCTGAAGATGGGTCAACA 59.431 50.000 0.00 0.00 32.19 3.33
216 221 3.493877 GCATGACAGATCTTCCAGAATCG 59.506 47.826 0.00 0.00 0.00 3.34
357 365 1.800805 CATCGTTTGTGGAGCAGAGT 58.199 50.000 0.00 0.00 0.00 3.24
398 414 2.537560 CCAGATCGGACAATGGCGC 61.538 63.158 0.00 0.00 36.56 6.53
431 447 1.676014 CGTGCTCCTCCGGAAAAATCT 60.676 52.381 5.23 0.00 0.00 2.40
433 449 0.323629 TCGTGCTCCTCCGGAAAAAT 59.676 50.000 5.23 0.00 0.00 1.82
445 463 2.126424 GTCGTCCCACTCGTGCTC 60.126 66.667 0.00 0.00 0.00 4.26
458 476 6.640518 AGGACATCATTGTAATTACTGTCGT 58.359 36.000 20.11 18.82 35.79 4.34
481 501 1.920574 CTGCGTCGTTACCTTGATGAG 59.079 52.381 0.00 0.00 0.00 2.90
519 539 1.651987 GGTGAAAATCGAGCCGATGA 58.348 50.000 10.25 0.00 46.30 2.92
605 625 1.304630 TCGGGATGGTCGGTCTGAA 60.305 57.895 0.00 0.00 0.00 3.02
618 638 1.030457 GGCTATCTCTTTCGTCGGGA 58.970 55.000 0.00 0.00 0.00 5.14
657 678 1.407434 CGCGCTTTCAAAAAGATGCA 58.593 45.000 5.56 0.00 0.00 3.96
658 679 0.091846 GCGCGCTTTCAAAAAGATGC 59.908 50.000 26.67 5.57 0.00 3.91
659 680 0.710017 GGCGCGCTTTCAAAAAGATG 59.290 50.000 32.29 0.00 0.00 2.90
660 681 0.729140 CGGCGCGCTTTCAAAAAGAT 60.729 50.000 32.29 0.00 0.00 2.40
661 682 1.369930 CGGCGCGCTTTCAAAAAGA 60.370 52.632 32.29 0.00 0.00 2.52
682 716 2.061028 CTTGTATATCTCGCATGCGCA 58.939 47.619 34.45 23.19 38.40 6.09
859 893 6.874134 CAGGTGGTACATATATAAAGGAGTGC 59.126 42.308 0.00 0.00 44.52 4.40
863 897 8.736097 ATGACAGGTGGTACATATATAAAGGA 57.264 34.615 0.00 0.00 44.52 3.36
911 945 2.716398 TCGATCTTGTTGATAGACGCG 58.284 47.619 3.53 3.53 35.14 6.01
912 946 3.483922 CACTCGATCTTGTTGATAGACGC 59.516 47.826 0.00 0.00 35.14 5.19
913 947 3.483922 GCACTCGATCTTGTTGATAGACG 59.516 47.826 0.00 0.00 35.14 4.18
914 948 4.424626 TGCACTCGATCTTGTTGATAGAC 58.575 43.478 0.00 0.00 35.14 2.59
956 990 1.862806 GCTCACCGTTTGCTCTGAC 59.137 57.895 0.00 0.00 0.00 3.51
990 1024 0.608035 TGGTCGCCATTTCCTTCACC 60.608 55.000 0.00 0.00 0.00 4.02
1112 1147 1.543802 TGTGGCCGGCAATCTAAAAAG 59.456 47.619 30.85 0.00 0.00 2.27
1299 1341 2.466982 ATCGCGCTCGTCGGAGTTA 61.467 57.895 5.56 0.00 42.53 2.24
1300 1342 3.812019 ATCGCGCTCGTCGGAGTT 61.812 61.111 5.56 0.00 42.53 3.01
1431 1489 6.677781 ATTTTGATTCCTCGATTCGCTTAA 57.322 33.333 0.00 0.00 0.00 1.85
1504 1562 4.515191 TCGAAGCATCACATTTATAAGCCC 59.485 41.667 0.00 0.00 0.00 5.19
1516 1574 2.589841 GTCGCATTTTTCGAAGCATCAC 59.410 45.455 7.73 0.00 37.73 3.06
1522 1580 0.515564 ACGGGTCGCATTTTTCGAAG 59.484 50.000 0.00 0.00 37.73 3.79
1548 1606 8.009622 TCGAGTATATATGATCGTAGAGGACT 57.990 38.462 16.35 4.09 43.63 3.85
1616 1674 8.499162 CGATTAGCAAAAGAGAAGAAGAAAAGA 58.501 33.333 0.00 0.00 0.00 2.52
1617 1675 8.499162 TCGATTAGCAAAAGAGAAGAAGAAAAG 58.501 33.333 0.00 0.00 0.00 2.27
1618 1676 8.378172 TCGATTAGCAAAAGAGAAGAAGAAAA 57.622 30.769 0.00 0.00 0.00 2.29
1619 1677 7.962964 TCGATTAGCAAAAGAGAAGAAGAAA 57.037 32.000 0.00 0.00 0.00 2.52
1622 1680 7.531280 TCATCGATTAGCAAAAGAGAAGAAG 57.469 36.000 0.00 0.00 0.00 2.85
1628 1686 7.171167 AGACATCATCATCGATTAGCAAAAGAG 59.829 37.037 0.00 0.00 0.00 2.85
1639 1697 4.332428 TGAAGCAGACATCATCATCGAT 57.668 40.909 0.00 0.00 0.00 3.59
1640 1698 3.806625 TGAAGCAGACATCATCATCGA 57.193 42.857 0.00 0.00 0.00 3.59
1641 1699 4.773510 CAATGAAGCAGACATCATCATCG 58.226 43.478 0.00 0.00 33.22 3.84
1642 1700 4.537965 GCAATGAAGCAGACATCATCATC 58.462 43.478 0.00 0.00 33.22 2.92
1643 1701 3.318275 GGCAATGAAGCAGACATCATCAT 59.682 43.478 0.00 0.00 33.22 2.45
1644 1702 2.686405 GGCAATGAAGCAGACATCATCA 59.314 45.455 0.00 0.00 33.22 3.07
1688 1747 4.844998 TCTCTGTCTTTGAGTGTCTCAG 57.155 45.455 0.00 0.00 41.75 3.35
1729 1788 6.146837 CACAACACAATGACCAAAAACTTCAA 59.853 34.615 0.00 0.00 0.00 2.69
1730 1789 5.636965 CACAACACAATGACCAAAAACTTCA 59.363 36.000 0.00 0.00 0.00 3.02
1731 1790 5.637387 ACACAACACAATGACCAAAAACTTC 59.363 36.000 0.00 0.00 0.00 3.01
1732 1791 5.546526 ACACAACACAATGACCAAAAACTT 58.453 33.333 0.00 0.00 0.00 2.66
1733 1792 5.146010 ACACAACACAATGACCAAAAACT 57.854 34.783 0.00 0.00 0.00 2.66
1734 1793 5.390356 CCAACACAACACAATGACCAAAAAC 60.390 40.000 0.00 0.00 0.00 2.43
1735 1794 4.692625 CCAACACAACACAATGACCAAAAA 59.307 37.500 0.00 0.00 0.00 1.94
1736 1795 4.248859 CCAACACAACACAATGACCAAAA 58.751 39.130 0.00 0.00 0.00 2.44
1737 1796 3.259374 ACCAACACAACACAATGACCAAA 59.741 39.130 0.00 0.00 0.00 3.28
1738 1797 2.828520 ACCAACACAACACAATGACCAA 59.171 40.909 0.00 0.00 0.00 3.67
1739 1798 2.165234 CACCAACACAACACAATGACCA 59.835 45.455 0.00 0.00 0.00 4.02
1740 1799 2.481104 CCACCAACACAACACAATGACC 60.481 50.000 0.00 0.00 0.00 4.02
1741 1800 2.165437 ACCACCAACACAACACAATGAC 59.835 45.455 0.00 0.00 0.00 3.06
1742 1801 2.451490 ACCACCAACACAACACAATGA 58.549 42.857 0.00 0.00 0.00 2.57
1743 1802 2.928757 CAACCACCAACACAACACAATG 59.071 45.455 0.00 0.00 0.00 2.82
1744 1803 2.676463 GCAACCACCAACACAACACAAT 60.676 45.455 0.00 0.00 0.00 2.71
1745 1804 1.337260 GCAACCACCAACACAACACAA 60.337 47.619 0.00 0.00 0.00 3.33
1746 1805 0.244994 GCAACCACCAACACAACACA 59.755 50.000 0.00 0.00 0.00 3.72
1747 1806 0.244994 TGCAACCACCAACACAACAC 59.755 50.000 0.00 0.00 0.00 3.32
1748 1807 0.529833 CTGCAACCACCAACACAACA 59.470 50.000 0.00 0.00 0.00 3.33
1749 1808 0.179113 CCTGCAACCACCAACACAAC 60.179 55.000 0.00 0.00 0.00 3.32
1750 1809 1.326213 CCCTGCAACCACCAACACAA 61.326 55.000 0.00 0.00 0.00 3.33
1751 1810 1.756172 CCCTGCAACCACCAACACA 60.756 57.895 0.00 0.00 0.00 3.72
1752 1811 0.827507 ATCCCTGCAACCACCAACAC 60.828 55.000 0.00 0.00 0.00 3.32
1753 1812 0.539438 GATCCCTGCAACCACCAACA 60.539 55.000 0.00 0.00 0.00 3.33
1754 1813 0.539438 TGATCCCTGCAACCACCAAC 60.539 55.000 0.00 0.00 0.00 3.77
1786 1876 3.508402 ACACCACTCGGTTGAAAAACTTT 59.492 39.130 0.00 0.00 46.31 2.66
1801 1891 3.754323 TGACAAAAACTTCGAACACCACT 59.246 39.130 0.00 0.00 0.00 4.00
1826 2006 2.309898 ATGGCGAAAAACTTCGAACG 57.690 45.000 11.20 0.00 46.52 3.95
1842 2022 1.267806 GTGCAACCACTGACAGAATGG 59.732 52.381 10.08 9.99 38.73 3.16
1898 2125 1.068055 GGAGTACAGAAAACGCTCCGA 60.068 52.381 0.00 0.00 36.74 4.55
1917 2144 4.826274 TGGATTTCTCTACACAGAAGGG 57.174 45.455 0.00 0.00 33.85 3.95
1918 2145 5.046304 TCCTTGGATTTCTCTACACAGAAGG 60.046 44.000 0.00 0.00 33.85 3.46
1946 2175 9.122779 GTAGTAGATAGTAGAAACACATCCTGT 57.877 37.037 0.00 0.00 32.89 4.00
1947 2176 8.569641 GGTAGTAGATAGTAGAAACACATCCTG 58.430 40.741 0.00 0.00 0.00 3.86
1948 2177 8.280084 TGGTAGTAGATAGTAGAAACACATCCT 58.720 37.037 0.00 0.00 0.00 3.24
1949 2178 8.351461 GTGGTAGTAGATAGTAGAAACACATCC 58.649 40.741 0.00 0.00 0.00 3.51
1950 2179 9.122779 AGTGGTAGTAGATAGTAGAAACACATC 57.877 37.037 0.00 0.00 0.00 3.06
1967 2196 9.198475 CCCTCTCTTTCTTTTATAGTGGTAGTA 57.802 37.037 0.00 0.00 0.00 1.82
1968 2197 7.364851 GCCCTCTCTTTCTTTTATAGTGGTAGT 60.365 40.741 0.00 0.00 0.00 2.73
1969 2198 6.987404 GCCCTCTCTTTCTTTTATAGTGGTAG 59.013 42.308 0.00 0.00 0.00 3.18
1970 2199 6.406624 CGCCCTCTCTTTCTTTTATAGTGGTA 60.407 42.308 0.00 0.00 0.00 3.25
1971 2200 5.627040 CGCCCTCTCTTTCTTTTATAGTGGT 60.627 44.000 0.00 0.00 0.00 4.16
1972 2201 4.811557 CGCCCTCTCTTTCTTTTATAGTGG 59.188 45.833 0.00 0.00 0.00 4.00
1973 2202 4.811557 CCGCCCTCTCTTTCTTTTATAGTG 59.188 45.833 0.00 0.00 0.00 2.74
1974 2203 4.715297 TCCGCCCTCTCTTTCTTTTATAGT 59.285 41.667 0.00 0.00 0.00 2.12
1975 2204 5.069251 TCTCCGCCCTCTCTTTCTTTTATAG 59.931 44.000 0.00 0.00 0.00 1.31
1976 2205 4.960469 TCTCCGCCCTCTCTTTCTTTTATA 59.040 41.667 0.00 0.00 0.00 0.98
1977 2206 3.775316 TCTCCGCCCTCTCTTTCTTTTAT 59.225 43.478 0.00 0.00 0.00 1.40
1978 2207 3.170717 TCTCCGCCCTCTCTTTCTTTTA 58.829 45.455 0.00 0.00 0.00 1.52
1979 2208 1.978580 TCTCCGCCCTCTCTTTCTTTT 59.021 47.619 0.00 0.00 0.00 2.27
1980 2209 1.645710 TCTCCGCCCTCTCTTTCTTT 58.354 50.000 0.00 0.00 0.00 2.52
1981 2210 1.276705 GTTCTCCGCCCTCTCTTTCTT 59.723 52.381 0.00 0.00 0.00 2.52
1982 2211 0.899019 GTTCTCCGCCCTCTCTTTCT 59.101 55.000 0.00 0.00 0.00 2.52
1983 2212 0.108089 GGTTCTCCGCCCTCTCTTTC 60.108 60.000 0.00 0.00 0.00 2.62
1984 2213 1.554583 GGGTTCTCCGCCCTCTCTTT 61.555 60.000 0.00 0.00 42.81 2.52
1985 2214 1.990614 GGGTTCTCCGCCCTCTCTT 60.991 63.158 0.00 0.00 42.81 2.85
1986 2215 2.364448 GGGTTCTCCGCCCTCTCT 60.364 66.667 0.00 0.00 42.81 3.10
1991 2220 2.506472 GATGAGGGTTCTCCGCCC 59.494 66.667 0.00 0.00 46.43 6.13
1992 2221 0.759436 TAGGATGAGGGTTCTCCGCC 60.759 60.000 0.00 0.00 41.52 6.13
1993 2222 1.343069 ATAGGATGAGGGTTCTCCGC 58.657 55.000 0.00 0.00 41.52 5.54
1994 2223 2.029828 CGAATAGGATGAGGGTTCTCCG 60.030 54.545 0.00 0.00 41.52 4.63
1995 2224 2.966516 ACGAATAGGATGAGGGTTCTCC 59.033 50.000 0.00 0.00 39.23 3.71
1996 2225 3.304794 CGACGAATAGGATGAGGGTTCTC 60.305 52.174 0.00 0.00 40.36 2.87
1997 2226 2.623889 CGACGAATAGGATGAGGGTTCT 59.376 50.000 0.00 0.00 0.00 3.01
1998 2227 2.621998 TCGACGAATAGGATGAGGGTTC 59.378 50.000 0.00 0.00 0.00 3.62
1999 2228 2.662866 TCGACGAATAGGATGAGGGTT 58.337 47.619 0.00 0.00 0.00 4.11
2000 2229 2.359981 TCGACGAATAGGATGAGGGT 57.640 50.000 0.00 0.00 0.00 4.34
2001 2230 3.381949 GTTTCGACGAATAGGATGAGGG 58.618 50.000 11.71 0.00 0.00 4.30
2002 2231 3.068307 AGGTTTCGACGAATAGGATGAGG 59.932 47.826 11.71 0.00 0.00 3.86
2003 2232 4.045104 CAGGTTTCGACGAATAGGATGAG 58.955 47.826 11.71 0.00 0.00 2.90
2004 2233 3.737047 GCAGGTTTCGACGAATAGGATGA 60.737 47.826 11.71 0.00 0.00 2.92
2005 2234 2.540101 GCAGGTTTCGACGAATAGGATG 59.460 50.000 11.71 7.60 0.00 3.51
2006 2235 2.167693 TGCAGGTTTCGACGAATAGGAT 59.832 45.455 11.71 0.00 0.00 3.24
2007 2236 1.546923 TGCAGGTTTCGACGAATAGGA 59.453 47.619 11.71 0.49 0.00 2.94
2008 2237 2.004583 TGCAGGTTTCGACGAATAGG 57.995 50.000 11.71 3.19 0.00 2.57
2009 2238 3.865745 AGATTGCAGGTTTCGACGAATAG 59.134 43.478 11.71 3.22 0.00 1.73
2010 2239 3.616821 CAGATTGCAGGTTTCGACGAATA 59.383 43.478 11.71 0.00 0.00 1.75
2011 2240 2.416547 CAGATTGCAGGTTTCGACGAAT 59.583 45.455 11.71 0.00 0.00 3.34
2012 2241 1.798223 CAGATTGCAGGTTTCGACGAA 59.202 47.619 6.10 6.10 0.00 3.85
2013 2242 1.000394 TCAGATTGCAGGTTTCGACGA 60.000 47.619 0.00 0.00 0.00 4.20
2014 2243 1.428448 TCAGATTGCAGGTTTCGACG 58.572 50.000 0.00 0.00 0.00 5.12
2015 2244 2.096496 CCATCAGATTGCAGGTTTCGAC 59.904 50.000 0.00 0.00 0.00 4.20
2016 2245 2.290260 ACCATCAGATTGCAGGTTTCGA 60.290 45.455 0.00 0.00 0.00 3.71
2017 2246 2.086869 ACCATCAGATTGCAGGTTTCG 58.913 47.619 0.00 0.00 0.00 3.46
2018 2247 3.350833 AGACCATCAGATTGCAGGTTTC 58.649 45.455 0.00 0.00 31.57 2.78
2019 2248 3.446442 AGACCATCAGATTGCAGGTTT 57.554 42.857 0.00 0.00 31.57 3.27
2020 2249 3.264193 TGTAGACCATCAGATTGCAGGTT 59.736 43.478 0.00 0.00 31.57 3.50
2021 2250 2.840038 TGTAGACCATCAGATTGCAGGT 59.160 45.455 0.00 0.00 34.76 4.00
2022 2251 3.548745 TGTAGACCATCAGATTGCAGG 57.451 47.619 0.00 0.00 0.00 4.85
2033 2262 1.344393 TGCTGGAGGGATGTAGACCAT 60.344 52.381 0.00 0.00 36.13 3.55
2034 2263 0.042581 TGCTGGAGGGATGTAGACCA 59.957 55.000 0.00 0.00 0.00 4.02
2035 2264 1.428869 ATGCTGGAGGGATGTAGACC 58.571 55.000 0.00 0.00 0.00 3.85
2036 2265 3.235200 AGTATGCTGGAGGGATGTAGAC 58.765 50.000 0.00 0.00 0.00 2.59
2037 2266 3.619900 AGTATGCTGGAGGGATGTAGA 57.380 47.619 0.00 0.00 0.00 2.59
2038 2267 5.808366 TTTAGTATGCTGGAGGGATGTAG 57.192 43.478 0.00 0.00 0.00 2.74
2039 2268 5.513094 GCATTTAGTATGCTGGAGGGATGTA 60.513 44.000 2.64 0.00 41.52 2.29
2040 2269 4.747931 GCATTTAGTATGCTGGAGGGATGT 60.748 45.833 2.64 0.00 41.52 3.06
2041 2270 3.755378 GCATTTAGTATGCTGGAGGGATG 59.245 47.826 2.64 0.00 41.52 3.51
2042 2271 3.557898 CGCATTTAGTATGCTGGAGGGAT 60.558 47.826 7.98 0.00 42.50 3.85
2043 2272 2.224281 CGCATTTAGTATGCTGGAGGGA 60.224 50.000 7.98 0.00 42.50 4.20
2044 2273 2.146342 CGCATTTAGTATGCTGGAGGG 58.854 52.381 7.98 0.00 42.50 4.30
2045 2274 2.838736 ACGCATTTAGTATGCTGGAGG 58.161 47.619 7.98 0.00 42.50 4.30
2046 2275 4.882671 AAACGCATTTAGTATGCTGGAG 57.117 40.909 7.98 0.00 42.50 3.86
2047 2276 5.220510 CGTAAAACGCATTTAGTATGCTGGA 60.221 40.000 7.98 0.00 42.50 3.86
2048 2277 4.961551 CGTAAAACGCATTTAGTATGCTGG 59.038 41.667 7.98 0.00 42.50 4.85
2063 2292 6.544622 TGATGGGTAATTAAAGCGTAAAACG 58.455 36.000 0.00 0.00 45.88 3.60
2064 2293 8.803799 CAATGATGGGTAATTAAAGCGTAAAAC 58.196 33.333 0.00 0.00 0.00 2.43
2065 2294 7.489757 GCAATGATGGGTAATTAAAGCGTAAAA 59.510 33.333 0.00 0.00 0.00 1.52
2066 2295 6.975772 GCAATGATGGGTAATTAAAGCGTAAA 59.024 34.615 0.00 0.00 0.00 2.01
2067 2296 6.460399 GGCAATGATGGGTAATTAAAGCGTAA 60.460 38.462 0.00 0.00 0.00 3.18
2068 2297 5.009210 GGCAATGATGGGTAATTAAAGCGTA 59.991 40.000 0.00 0.00 0.00 4.42
2069 2298 4.202111 GGCAATGATGGGTAATTAAAGCGT 60.202 41.667 0.00 0.00 0.00 5.07
2070 2299 4.202101 TGGCAATGATGGGTAATTAAAGCG 60.202 41.667 0.00 0.00 0.00 4.68
2071 2300 5.275067 TGGCAATGATGGGTAATTAAAGC 57.725 39.130 0.00 0.00 0.00 3.51
2072 2301 8.641541 AGTAATGGCAATGATGGGTAATTAAAG 58.358 33.333 0.00 0.00 0.00 1.85
2073 2302 8.546083 AGTAATGGCAATGATGGGTAATTAAA 57.454 30.769 0.00 0.00 0.00 1.52
2074 2303 8.546083 AAGTAATGGCAATGATGGGTAATTAA 57.454 30.769 0.00 0.00 0.00 1.40
2075 2304 9.647918 TTAAGTAATGGCAATGATGGGTAATTA 57.352 29.630 0.00 0.00 0.00 1.40
2076 2305 8.546083 TTAAGTAATGGCAATGATGGGTAATT 57.454 30.769 0.00 0.00 0.00 1.40
2077 2306 8.725606 ATTAAGTAATGGCAATGATGGGTAAT 57.274 30.769 0.00 0.00 0.00 1.89
2078 2307 8.546083 AATTAAGTAATGGCAATGATGGGTAA 57.454 30.769 0.00 0.00 0.00 2.85
2079 2308 9.647918 TTAATTAAGTAATGGCAATGATGGGTA 57.352 29.630 0.00 0.00 0.00 3.69
2080 2309 8.546083 TTAATTAAGTAATGGCAATGATGGGT 57.454 30.769 0.00 0.00 0.00 4.51
2099 2328 9.775854 CCAATGGCAATGATTGGTAATTAATTA 57.224 29.630 3.60 3.71 43.40 1.40
2100 2329 7.720515 CCCAATGGCAATGATTGGTAATTAATT 59.279 33.333 14.65 5.89 45.88 1.40
2101 2330 7.147337 ACCCAATGGCAATGATTGGTAATTAAT 60.147 33.333 14.65 0.00 45.88 1.40
2102 2331 6.157645 ACCCAATGGCAATGATTGGTAATTAA 59.842 34.615 14.65 0.00 45.88 1.40
2103 2332 5.664908 ACCCAATGGCAATGATTGGTAATTA 59.335 36.000 14.65 0.00 45.88 1.40
2104 2333 4.474287 ACCCAATGGCAATGATTGGTAATT 59.526 37.500 14.65 0.00 45.88 1.40
2105 2334 4.039339 ACCCAATGGCAATGATTGGTAAT 58.961 39.130 14.65 0.19 45.88 1.89
2106 2335 3.448934 ACCCAATGGCAATGATTGGTAA 58.551 40.909 14.65 0.00 45.88 2.85
2107 2336 3.113191 ACCCAATGGCAATGATTGGTA 57.887 42.857 14.65 0.00 45.88 3.25
2108 2337 1.955451 ACCCAATGGCAATGATTGGT 58.045 45.000 14.65 6.51 45.88 3.67
2109 2338 4.190772 GTTAACCCAATGGCAATGATTGG 58.809 43.478 3.60 7.37 46.58 3.16
2110 2339 4.829968 TGTTAACCCAATGGCAATGATTG 58.170 39.130 3.60 0.00 33.59 2.67
2111 2340 5.673514 GATGTTAACCCAATGGCAATGATT 58.326 37.500 3.60 0.88 33.59 2.57
2112 2341 4.202141 CGATGTTAACCCAATGGCAATGAT 60.202 41.667 3.60 0.00 33.59 2.45
2113 2342 3.130164 CGATGTTAACCCAATGGCAATGA 59.870 43.478 3.60 0.00 33.59 2.57
2114 2343 3.119173 ACGATGTTAACCCAATGGCAATG 60.119 43.478 2.48 0.00 33.59 2.82
2115 2344 3.096092 ACGATGTTAACCCAATGGCAAT 58.904 40.909 2.48 0.00 33.59 3.56
2116 2345 2.520069 ACGATGTTAACCCAATGGCAA 58.480 42.857 2.48 0.00 33.59 4.52
2117 2346 2.208132 ACGATGTTAACCCAATGGCA 57.792 45.000 2.48 0.00 33.59 4.92
2118 2347 2.159296 GGAACGATGTTAACCCAATGGC 60.159 50.000 2.48 0.00 33.59 4.40
2119 2348 2.425668 GGGAACGATGTTAACCCAATGG 59.574 50.000 2.48 0.00 40.20 3.16
2120 2349 2.425668 GGGGAACGATGTTAACCCAATG 59.574 50.000 13.90 0.00 42.03 2.82
2121 2350 2.730382 GGGGAACGATGTTAACCCAAT 58.270 47.619 13.90 0.00 42.03 3.16
2122 2351 2.203470 GGGGAACGATGTTAACCCAA 57.797 50.000 13.90 0.00 42.03 4.12
2123 2352 3.961582 GGGGAACGATGTTAACCCA 57.038 52.632 13.90 0.00 42.03 4.51
2142 2371 4.131088 GAGGGGAGCGACGTGGTC 62.131 72.222 0.00 0.00 44.49 4.02
2143 2372 3.278072 TAGAGGGGAGCGACGTGGT 62.278 63.158 0.00 0.00 0.00 4.16
2144 2373 2.439701 TAGAGGGGAGCGACGTGG 60.440 66.667 0.00 0.00 0.00 4.94
2145 2374 2.772691 GGTAGAGGGGAGCGACGTG 61.773 68.421 0.00 0.00 0.00 4.49
2146 2375 2.439883 GGTAGAGGGGAGCGACGT 60.440 66.667 0.00 0.00 0.00 4.34
2147 2376 3.217743 GGGTAGAGGGGAGCGACG 61.218 72.222 0.00 0.00 0.00 5.12
2148 2377 1.829096 GAGGGTAGAGGGGAGCGAC 60.829 68.421 0.00 0.00 0.00 5.19
2149 2378 2.314215 TGAGGGTAGAGGGGAGCGA 61.314 63.158 0.00 0.00 0.00 4.93
2150 2379 2.128507 GTGAGGGTAGAGGGGAGCG 61.129 68.421 0.00 0.00 0.00 5.03
2151 2380 2.128507 CGTGAGGGTAGAGGGGAGC 61.129 68.421 0.00 0.00 0.00 4.70
2152 2381 2.128507 GCGTGAGGGTAGAGGGGAG 61.129 68.421 0.00 0.00 0.00 4.30
2153 2382 2.043248 GCGTGAGGGTAGAGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
2154 2383 1.987855 TTGCGTGAGGGTAGAGGGG 60.988 63.158 0.00 0.00 0.00 4.79
2155 2384 1.218316 GTTGCGTGAGGGTAGAGGG 59.782 63.158 0.00 0.00 0.00 4.30
2156 2385 1.218316 GGTTGCGTGAGGGTAGAGG 59.782 63.158 0.00 0.00 0.00 3.69
2157 2386 0.108615 CTGGTTGCGTGAGGGTAGAG 60.109 60.000 0.00 0.00 0.00 2.43
2158 2387 1.972198 CTGGTTGCGTGAGGGTAGA 59.028 57.895 0.00 0.00 0.00 2.59
2159 2388 1.741770 GCTGGTTGCGTGAGGGTAG 60.742 63.158 0.00 0.00 0.00 3.18
2160 2389 2.046009 TTGCTGGTTGCGTGAGGGTA 62.046 55.000 0.00 0.00 46.63 3.69
2161 2390 2.697147 ATTGCTGGTTGCGTGAGGGT 62.697 55.000 0.00 0.00 46.63 4.34
2162 2391 1.526575 AATTGCTGGTTGCGTGAGGG 61.527 55.000 0.00 0.00 46.63 4.30
2163 2392 0.314935 AAATTGCTGGTTGCGTGAGG 59.685 50.000 0.00 0.00 46.63 3.86
2164 2393 1.788308 CAAAATTGCTGGTTGCGTGAG 59.212 47.619 0.00 0.00 46.63 3.51
2165 2394 1.537776 CCAAAATTGCTGGTTGCGTGA 60.538 47.619 0.00 0.00 46.63 4.35
2166 2395 0.860533 CCAAAATTGCTGGTTGCGTG 59.139 50.000 0.00 0.00 46.63 5.34
2167 2396 0.879839 GCCAAAATTGCTGGTTGCGT 60.880 50.000 8.28 0.00 46.63 5.24
2168 2397 0.879400 TGCCAAAATTGCTGGTTGCG 60.879 50.000 8.28 0.00 46.63 4.85
2169 2398 0.587768 GTGCCAAAATTGCTGGTTGC 59.412 50.000 8.28 0.00 43.25 4.17
2170 2399 1.228533 GGTGCCAAAATTGCTGGTTG 58.771 50.000 8.28 0.00 36.24 3.77
2171 2400 0.249826 CGGTGCCAAAATTGCTGGTT 60.250 50.000 8.28 0.00 36.24 3.67
2172 2401 1.367102 CGGTGCCAAAATTGCTGGT 59.633 52.632 8.28 0.00 36.24 4.00
2173 2402 2.028733 GCGGTGCCAAAATTGCTGG 61.029 57.895 2.96 2.96 36.99 4.85
2174 2403 3.553039 GCGGTGCCAAAATTGCTG 58.447 55.556 0.00 0.00 0.00 4.41
2197 2426 4.148825 CAAGAGGGCGGACGAGGG 62.149 72.222 0.00 0.00 0.00 4.30
2198 2427 4.821589 GCAAGAGGGCGGACGAGG 62.822 72.222 0.00 0.00 0.00 4.63
2199 2428 3.764466 AGCAAGAGGGCGGACGAG 61.764 66.667 0.00 0.00 39.27 4.18
2200 2429 4.069232 CAGCAAGAGGGCGGACGA 62.069 66.667 0.00 0.00 39.27 4.20
2202 2431 4.704833 TGCAGCAAGAGGGCGGAC 62.705 66.667 0.00 0.00 39.27 4.79
2203 2432 3.952508 TTGCAGCAAGAGGGCGGA 61.953 61.111 2.83 0.00 39.27 5.54
2204 2433 3.741476 GTTGCAGCAAGAGGGCGG 61.741 66.667 8.49 0.00 39.27 6.13
2205 2434 3.741476 GGTTGCAGCAAGAGGGCG 61.741 66.667 8.49 0.00 39.27 6.13
2206 2435 3.741476 CGGTTGCAGCAAGAGGGC 61.741 66.667 8.49 0.00 0.00 5.19
2207 2436 3.741476 GCGGTTGCAGCAAGAGGG 61.741 66.667 8.49 0.00 42.15 4.30
2208 2437 4.093952 CGCGGTTGCAGCAAGAGG 62.094 66.667 8.49 1.71 42.97 3.69
2209 2438 4.748679 GCGCGGTTGCAGCAAGAG 62.749 66.667 8.49 6.74 42.97 2.85
2250 2479 4.452733 CACGGGCGGAGGTTCTCC 62.453 72.222 3.96 3.96 46.44 3.71
2312 2541 2.543067 ATCAACAGGAAGCCCGGAGC 62.543 60.000 0.73 4.57 44.25 4.70
2313 2542 0.830648 TATCAACAGGAAGCCCGGAG 59.169 55.000 0.73 0.00 37.58 4.63
2314 2543 1.281419 TTATCAACAGGAAGCCCGGA 58.719 50.000 0.73 0.00 37.58 5.14
2315 2544 1.743394 GTTTATCAACAGGAAGCCCGG 59.257 52.381 0.00 0.00 37.58 5.73
2316 2545 2.678336 GAGTTTATCAACAGGAAGCCCG 59.322 50.000 0.00 0.00 35.05 6.13
2317 2546 2.678336 CGAGTTTATCAACAGGAAGCCC 59.322 50.000 0.00 0.00 35.05 5.19
2318 2547 3.596214 TCGAGTTTATCAACAGGAAGCC 58.404 45.455 0.00 0.00 35.05 4.35
2319 2548 4.093556 CCTTCGAGTTTATCAACAGGAAGC 59.906 45.833 13.28 0.00 40.10 3.86
2320 2549 4.093556 GCCTTCGAGTTTATCAACAGGAAG 59.906 45.833 12.38 12.38 40.58 3.46
2321 2550 4.000988 GCCTTCGAGTTTATCAACAGGAA 58.999 43.478 0.00 0.00 35.05 3.36
2322 2551 3.596214 GCCTTCGAGTTTATCAACAGGA 58.404 45.455 0.00 0.00 35.05 3.86
2323 2552 2.678336 GGCCTTCGAGTTTATCAACAGG 59.322 50.000 0.00 0.00 35.05 4.00
2324 2553 2.348666 CGGCCTTCGAGTTTATCAACAG 59.651 50.000 0.00 0.00 42.43 3.16
2325 2554 2.343101 CGGCCTTCGAGTTTATCAACA 58.657 47.619 0.00 0.00 42.43 3.33
2326 2555 1.062148 GCGGCCTTCGAGTTTATCAAC 59.938 52.381 0.00 0.00 42.43 3.18
2327 2556 1.365699 GCGGCCTTCGAGTTTATCAA 58.634 50.000 0.00 0.00 42.43 2.57
2328 2557 0.804544 CGCGGCCTTCGAGTTTATCA 60.805 55.000 8.37 0.00 42.43 2.15
2329 2558 1.488261 CCGCGGCCTTCGAGTTTATC 61.488 60.000 14.67 0.00 42.43 1.75
2330 2559 1.520787 CCGCGGCCTTCGAGTTTAT 60.521 57.895 14.67 0.00 42.43 1.40
2331 2560 2.125832 CCGCGGCCTTCGAGTTTA 60.126 61.111 14.67 0.00 42.43 2.01
2332 2561 2.999739 TTTCCGCGGCCTTCGAGTTT 63.000 55.000 23.51 0.00 42.43 2.66
2333 2562 2.999739 TTTTCCGCGGCCTTCGAGTT 63.000 55.000 23.51 0.00 42.43 3.01
2334 2563 3.524648 TTTTCCGCGGCCTTCGAGT 62.525 57.895 23.51 0.00 42.43 4.18
2335 2564 2.740826 TTTTCCGCGGCCTTCGAG 60.741 61.111 23.51 0.00 42.43 4.04
2336 2565 3.045492 GTTTTCCGCGGCCTTCGA 61.045 61.111 23.51 0.00 42.43 3.71
2337 2566 4.439472 CGTTTTCCGCGGCCTTCG 62.439 66.667 23.51 18.27 42.76 3.79
2338 2567 3.023591 CTCGTTTTCCGCGGCCTTC 62.024 63.158 23.51 10.15 36.19 3.46
2339 2568 2.999739 TTCTCGTTTTCCGCGGCCTT 63.000 55.000 23.51 0.00 36.19 4.35
2340 2569 3.524648 TTCTCGTTTTCCGCGGCCT 62.525 57.895 23.51 0.00 36.19 5.19
2341 2570 3.023591 CTTCTCGTTTTCCGCGGCC 62.024 63.158 23.51 7.09 36.19 6.13
2342 2571 2.025418 TCTTCTCGTTTTCCGCGGC 61.025 57.895 23.51 5.12 36.19 6.53
2343 2572 1.623973 GGTCTTCTCGTTTTCCGCGG 61.624 60.000 22.12 22.12 36.19 6.46
2344 2573 0.942410 TGGTCTTCTCGTTTTCCGCG 60.942 55.000 0.00 0.00 36.19 6.46
2345 2574 0.511653 GTGGTCTTCTCGTTTTCCGC 59.488 55.000 0.00 0.00 36.19 5.54
2346 2575 1.145803 GGTGGTCTTCTCGTTTTCCG 58.854 55.000 0.00 0.00 38.13 4.30
2347 2576 2.249844 TGGTGGTCTTCTCGTTTTCC 57.750 50.000 0.00 0.00 0.00 3.13
2348 2577 2.289820 GGTTGGTGGTCTTCTCGTTTTC 59.710 50.000 0.00 0.00 0.00 2.29
2349 2578 2.294979 GGTTGGTGGTCTTCTCGTTTT 58.705 47.619 0.00 0.00 0.00 2.43
2350 2579 1.476291 GGGTTGGTGGTCTTCTCGTTT 60.476 52.381 0.00 0.00 0.00 3.60
2351 2580 0.108019 GGGTTGGTGGTCTTCTCGTT 59.892 55.000 0.00 0.00 0.00 3.85
2352 2581 0.763223 AGGGTTGGTGGTCTTCTCGT 60.763 55.000 0.00 0.00 0.00 4.18
2353 2582 0.037232 GAGGGTTGGTGGTCTTCTCG 60.037 60.000 0.00 0.00 0.00 4.04
2354 2583 0.325272 GGAGGGTTGGTGGTCTTCTC 59.675 60.000 0.00 0.00 0.00 2.87
2355 2584 0.104409 AGGAGGGTTGGTGGTCTTCT 60.104 55.000 0.00 0.00 0.00 2.85
2356 2585 0.325272 GAGGAGGGTTGGTGGTCTTC 59.675 60.000 0.00 0.00 0.00 2.87
2357 2586 0.104409 AGAGGAGGGTTGGTGGTCTT 60.104 55.000 0.00 0.00 0.00 3.01
2358 2587 0.838122 CAGAGGAGGGTTGGTGGTCT 60.838 60.000 0.00 0.00 0.00 3.85
2359 2588 1.679898 CAGAGGAGGGTTGGTGGTC 59.320 63.158 0.00 0.00 0.00 4.02
2360 2589 3.906980 CAGAGGAGGGTTGGTGGT 58.093 61.111 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.