Multiple sequence alignment - TraesCS7A01G226400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G226400 chr7A 100.000 7243 0 0 1 7243 195743072 195735830 0.000000e+00 13376.0
1 TraesCS7A01G226400 chr7A 88.958 480 47 5 5810 6284 195645802 195645324 8.090000e-164 588.0
2 TraesCS7A01G226400 chr7A 89.706 408 35 6 322 727 195747961 195747559 1.390000e-141 514.0
3 TraesCS7A01G226400 chr7A 91.813 171 14 0 5003 5173 195645966 195645796 9.390000e-59 239.0
4 TraesCS7A01G226400 chr7A 87.958 191 8 5 799 974 195747551 195747361 2.050000e-50 211.0
5 TraesCS7A01G226400 chr7B 93.906 5711 257 54 755 6409 332159107 332164782 0.000000e+00 8534.0
6 TraesCS7A01G226400 chr7B 87.842 732 75 9 1 729 332158404 332159124 0.000000e+00 846.0
7 TraesCS7A01G226400 chr7B 88.438 666 51 15 5810 6465 332238632 332239281 0.000000e+00 780.0
8 TraesCS7A01G226400 chr7B 86.530 438 53 3 6807 7243 332170605 332171037 1.830000e-130 477.0
9 TraesCS7A01G226400 chr7D 94.954 4677 168 29 1582 6240 188299441 188304067 0.000000e+00 7267.0
10 TraesCS7A01G226400 chr7D 93.269 728 32 10 801 1522 188298632 188299348 0.000000e+00 1057.0
11 TraesCS7A01G226400 chr7D 93.712 652 34 3 6595 7243 188308275 188308922 0.000000e+00 970.0
12 TraesCS7A01G226400 chr7D 88.375 714 61 6 5 715 188297577 188298271 0.000000e+00 839.0
13 TraesCS7A01G226400 chr7D 83.607 122 18 2 2837 2956 188579141 188579262 5.940000e-21 113.0
14 TraesCS7A01G226400 chr5A 94.545 55 3 0 6548 6602 555067486 555067432 1.290000e-12 86.1
15 TraesCS7A01G226400 chr4A 96.078 51 2 0 6547 6597 528606281 528606331 4.660000e-12 84.2
16 TraesCS7A01G226400 chr4A 96.078 51 2 0 6547 6597 528646263 528646313 4.660000e-12 84.2
17 TraesCS7A01G226400 chr3A 96.078 51 2 0 6547 6597 610593534 610593484 4.660000e-12 84.2
18 TraesCS7A01G226400 chr2B 97.917 48 1 0 6549 6596 104016299 104016252 4.660000e-12 84.2
19 TraesCS7A01G226400 chr5D 96.000 50 2 0 6547 6596 353695143 353695094 1.670000e-11 82.4
20 TraesCS7A01G226400 chr5D 96.000 50 2 0 6547 6596 565056161 565056112 1.670000e-11 82.4
21 TraesCS7A01G226400 chr6A 89.062 64 5 2 6547 6609 192529044 192529106 2.170000e-10 78.7
22 TraesCS7A01G226400 chr6A 100.000 28 0 0 600 627 52402740 52402713 1.300000e-02 52.8
23 TraesCS7A01G226400 chr4B 91.228 57 5 0 6547 6603 553907 553963 2.170000e-10 78.7
24 TraesCS7A01G226400 chr5B 100.000 28 0 0 600 627 692707073 692707100 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G226400 chr7A 195735830 195743072 7242 True 13376.000000 13376 100.000000 1 7243 1 chr7A.!!$R1 7242
1 TraesCS7A01G226400 chr7A 195645324 195645966 642 True 413.500000 588 90.385500 5003 6284 2 chr7A.!!$R2 1281
2 TraesCS7A01G226400 chr7A 195747361 195747961 600 True 362.500000 514 88.832000 322 974 2 chr7A.!!$R3 652
3 TraesCS7A01G226400 chr7B 332158404 332164782 6378 False 4690.000000 8534 90.874000 1 6409 2 chr7B.!!$F3 6408
4 TraesCS7A01G226400 chr7B 332238632 332239281 649 False 780.000000 780 88.438000 5810 6465 1 chr7B.!!$F2 655
5 TraesCS7A01G226400 chr7D 188297577 188304067 6490 False 3054.333333 7267 92.199333 5 6240 3 chr7D.!!$F3 6235
6 TraesCS7A01G226400 chr7D 188308275 188308922 647 False 970.000000 970 93.712000 6595 7243 1 chr7D.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1346 0.247736 GCGGGCCTATCTACATCAGG 59.752 60.000 0.84 0.00 0.00 3.86 F
1335 1744 0.613853 TCCTTCAGGTACAGTCCCGG 60.614 60.000 0.00 0.00 36.34 5.73 F
1749 2197 0.950836 GGCAATTTTGGTTTGGCACC 59.049 50.000 5.25 0.00 45.88 5.01 F
1863 2312 1.160137 GACAGCGGCAGACTTCATTT 58.840 50.000 1.45 0.00 0.00 2.32 F
2893 3349 1.330655 CCCACTGTCCTGACGCCTAT 61.331 60.000 0.00 0.00 0.00 2.57 F
3327 3796 0.956902 AAGCGCTGACATGATGTGCA 60.957 50.000 12.58 0.11 39.38 4.57 F
3985 4455 1.786579 GTTGCTTTGAAACATCACCGC 59.213 47.619 0.00 0.00 0.00 5.68 F
4974 5446 2.289010 GGAAAGCATGGACAAGGGTTTG 60.289 50.000 0.00 0.00 40.24 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 2199 1.081840 GTTTTGCACCTGCTCGAGC 60.082 57.895 30.42 30.42 42.66 5.03 R
2879 3335 1.517361 CTGCATAGGCGTCAGGACA 59.483 57.895 0.00 0.00 45.35 4.02 R
3073 3540 1.750778 CTGCCCATGACACCCAATAAC 59.249 52.381 0.00 0.00 0.00 1.89 R
3286 3754 1.918262 ACCCCAGAGAAGCAATCATGA 59.082 47.619 0.00 0.00 0.00 3.07 R
4283 4755 2.040278 AGGCTCTGTCTGGCATTTTGTA 59.960 45.455 0.00 0.00 0.00 2.41 R
5001 5474 1.867233 GGAGCGATACGTTACTACCGA 59.133 52.381 0.00 0.00 0.00 4.69 R
5682 6160 0.388659 TGTGCCAACTTGTGAATGCC 59.611 50.000 0.00 0.00 0.00 4.40 R
6927 7418 0.036732 TGCCGCATCAAGAGTCCTTT 59.963 50.000 0.00 0.00 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.381590 GCAGAAAACCTCTCCAACAGTTT 59.618 43.478 0.00 0.00 34.02 2.66
45 46 3.953542 AAACCTCTCCAACAGTTTCCT 57.046 42.857 0.00 0.00 0.00 3.36
47 48 5.382664 AAACCTCTCCAACAGTTTCCTTA 57.617 39.130 0.00 0.00 0.00 2.69
69 70 9.720769 CCTTAAAAGTGTCCATAACTTTAGAGA 57.279 33.333 2.26 0.00 44.93 3.10
74 75 9.442047 AAAGTGTCCATAACTTTAGAGATTCTG 57.558 33.333 0.00 0.00 44.10 3.02
75 76 8.140112 AGTGTCCATAACTTTAGAGATTCTGT 57.860 34.615 0.00 0.00 0.00 3.41
76 77 9.256228 AGTGTCCATAACTTTAGAGATTCTGTA 57.744 33.333 0.00 0.00 0.00 2.74
84 85 7.674471 ACTTTAGAGATTCTGTAAAAGTGGC 57.326 36.000 14.72 0.00 30.76 5.01
85 86 7.224297 ACTTTAGAGATTCTGTAAAAGTGGCA 58.776 34.615 14.72 0.00 30.76 4.92
120 124 9.062674 GCAAGTTTACGGAAAGATAATCTTTTC 57.937 33.333 0.00 0.00 45.85 2.29
167 171 0.798776 CCGAAACTTCATCGCTTGCT 59.201 50.000 0.00 0.00 38.93 3.91
169 173 1.201965 CGAAACTTCATCGCTTGCTCC 60.202 52.381 0.00 0.00 33.07 4.70
202 206 1.743995 GGAACGCCGCAATACACCT 60.744 57.895 0.00 0.00 0.00 4.00
207 211 1.426041 CGCCGCAATACACCTGTACC 61.426 60.000 0.00 0.00 32.72 3.34
249 253 1.303317 CCTGCTACCAAACCGCCTT 60.303 57.895 0.00 0.00 0.00 4.35
296 300 4.230002 CGACACCCCACACACCGT 62.230 66.667 0.00 0.00 0.00 4.83
297 301 2.191109 GACACCCCACACACCGTT 59.809 61.111 0.00 0.00 0.00 4.44
302 306 3.656045 CCCACACACCGTTTCGCC 61.656 66.667 0.00 0.00 0.00 5.54
355 359 2.159476 GCTGTCACATGTGCCACTAATG 60.159 50.000 21.38 4.86 0.00 1.90
376 380 1.477923 GGCGGGTCTTGGGCAATTATA 60.478 52.381 0.00 0.00 0.00 0.98
447 452 2.904434 TCCCAGACAACTTCCTCTAACC 59.096 50.000 0.00 0.00 0.00 2.85
482 490 9.722056 GGTGTCATCAAGTTTTATTGATCATAC 57.278 33.333 0.00 0.00 44.68 2.39
489 497 8.175069 TCAAGTTTTATTGATCATACTTCACGC 58.825 33.333 0.00 0.00 34.31 5.34
497 505 0.869880 CATACTTCACGCGCGATGGA 60.870 55.000 39.36 26.24 0.00 3.41
560 568 5.070180 TCATCCCTGATCAAGAGAATGAGAC 59.930 44.000 0.00 0.00 31.76 3.36
563 571 5.427806 TCCCTGATCAAGAGAATGAGACAAT 59.572 40.000 0.00 0.00 31.76 2.71
594 616 4.067192 TCTATCGGCATCACCATTCAATG 58.933 43.478 0.00 0.00 39.03 2.82
595 617 0.740149 TCGGCATCACCATTCAATGC 59.260 50.000 0.00 0.00 43.95 3.56
596 618 0.742505 CGGCATCACCATTCAATGCT 59.257 50.000 6.53 0.00 44.09 3.79
597 619 1.268896 CGGCATCACCATTCAATGCTC 60.269 52.381 6.53 0.00 44.09 4.26
598 620 2.029623 GGCATCACCATTCAATGCTCT 58.970 47.619 6.53 0.00 44.09 4.09
599 621 3.216800 GGCATCACCATTCAATGCTCTA 58.783 45.455 6.53 0.00 44.09 2.43
600 622 3.004106 GGCATCACCATTCAATGCTCTAC 59.996 47.826 6.53 0.00 44.09 2.59
601 623 3.004106 GCATCACCATTCAATGCTCTACC 59.996 47.826 0.00 0.00 41.95 3.18
602 624 4.458397 CATCACCATTCAATGCTCTACCT 58.542 43.478 0.00 0.00 0.00 3.08
603 625 4.574674 TCACCATTCAATGCTCTACCTT 57.425 40.909 0.00 0.00 0.00 3.50
604 626 4.517285 TCACCATTCAATGCTCTACCTTC 58.483 43.478 0.00 0.00 0.00 3.46
605 627 4.019411 TCACCATTCAATGCTCTACCTTCA 60.019 41.667 0.00 0.00 0.00 3.02
606 628 4.701651 CACCATTCAATGCTCTACCTTCAA 59.298 41.667 0.00 0.00 0.00 2.69
607 629 5.183713 CACCATTCAATGCTCTACCTTCAAA 59.816 40.000 0.00 0.00 0.00 2.69
671 693 5.077564 TCACTACTGATATTCCCATACGCT 58.922 41.667 0.00 0.00 0.00 5.07
729 1090 4.386350 GCTTCGAAAGACAACTTCCTCTAC 59.614 45.833 0.00 0.00 41.84 2.59
731 1092 3.257624 TCGAAAGACAACTTCCTCTACCC 59.742 47.826 0.00 0.00 35.05 3.69
732 1093 3.616802 CGAAAGACAACTTCCTCTACCCC 60.617 52.174 0.00 0.00 35.05 4.95
733 1094 1.954035 AGACAACTTCCTCTACCCCC 58.046 55.000 0.00 0.00 0.00 5.40
734 1095 0.535797 GACAACTTCCTCTACCCCCG 59.464 60.000 0.00 0.00 0.00 5.73
735 1096 1.221021 CAACTTCCTCTACCCCCGC 59.779 63.158 0.00 0.00 0.00 6.13
736 1097 1.229400 AACTTCCTCTACCCCCGCA 60.229 57.895 0.00 0.00 0.00 5.69
737 1098 0.838987 AACTTCCTCTACCCCCGCAA 60.839 55.000 0.00 0.00 0.00 4.85
738 1099 0.838987 ACTTCCTCTACCCCCGCAAA 60.839 55.000 0.00 0.00 0.00 3.68
739 1100 0.326927 CTTCCTCTACCCCCGCAAAA 59.673 55.000 0.00 0.00 0.00 2.44
740 1101 0.772384 TTCCTCTACCCCCGCAAAAA 59.228 50.000 0.00 0.00 0.00 1.94
763 1124 9.663904 AAAAAGAAAAGCAAAAAGAAAGACAAC 57.336 25.926 0.00 0.00 0.00 3.32
764 1125 8.607441 AAAGAAAAGCAAAAAGAAAGACAACT 57.393 26.923 0.00 0.00 0.00 3.16
765 1126 8.607441 AAGAAAAGCAAAAAGAAAGACAACTT 57.393 26.923 0.00 0.00 38.05 2.66
766 1127 8.244494 AGAAAAGCAAAAAGAAAGACAACTTC 57.756 30.769 0.00 0.00 35.05 3.01
767 1128 6.968131 AAAGCAAAAAGAAAGACAACTTCC 57.032 33.333 0.00 0.00 35.05 3.46
768 1129 5.921962 AGCAAAAAGAAAGACAACTTCCT 57.078 34.783 0.00 0.00 35.05 3.36
769 1130 5.895928 AGCAAAAAGAAAGACAACTTCCTC 58.104 37.500 0.00 0.00 35.05 3.71
770 1131 5.654209 AGCAAAAAGAAAGACAACTTCCTCT 59.346 36.000 0.00 0.00 35.05 3.69
771 1132 6.828785 AGCAAAAAGAAAGACAACTTCCTCTA 59.171 34.615 0.00 0.00 35.05 2.43
772 1133 7.339466 AGCAAAAAGAAAGACAACTTCCTCTAA 59.661 33.333 0.00 0.00 35.05 2.10
773 1134 7.432545 GCAAAAAGAAAGACAACTTCCTCTAAC 59.567 37.037 0.00 0.00 35.05 2.34
774 1135 8.678199 CAAAAAGAAAGACAACTTCCTCTAACT 58.322 33.333 0.00 0.00 35.05 2.24
775 1136 8.809468 AAAAGAAAGACAACTTCCTCTAACTT 57.191 30.769 0.00 0.00 35.05 2.66
776 1137 8.809468 AAAGAAAGACAACTTCCTCTAACTTT 57.191 30.769 0.00 0.00 35.05 2.66
777 1138 8.809468 AAGAAAGACAACTTCCTCTAACTTTT 57.191 30.769 0.00 0.00 35.05 2.27
778 1139 8.809468 AGAAAGACAACTTCCTCTAACTTTTT 57.191 30.769 0.00 0.00 35.05 1.94
831 1224 6.517605 GTTGAACAACTTCCTCTAACTCTCT 58.482 40.000 9.98 0.00 38.25 3.10
847 1247 0.462759 CTCTTTGCGATGAGACCCCC 60.463 60.000 10.70 0.00 32.44 5.40
897 1305 2.408050 CTGGCTCATATGAAGCGTACC 58.592 52.381 6.90 2.81 0.00 3.34
938 1346 0.247736 GCGGGCCTATCTACATCAGG 59.752 60.000 0.84 0.00 0.00 3.86
1120 1529 2.835431 CGCACAAACCCCCAACCA 60.835 61.111 0.00 0.00 0.00 3.67
1335 1744 0.613853 TCCTTCAGGTACAGTCCCGG 60.614 60.000 0.00 0.00 36.34 5.73
1492 1902 4.371855 ACGTATGTATCAGTGACCAGTG 57.628 45.455 0.00 0.00 0.00 3.66
1523 1933 4.777140 TCGATCATGTTGCTTCGTTATG 57.223 40.909 0.00 0.00 33.52 1.90
1533 1943 3.325870 TGCTTCGTTATGACTCAAGTGG 58.674 45.455 0.00 0.00 0.00 4.00
1535 1945 3.123621 GCTTCGTTATGACTCAAGTGGTG 59.876 47.826 0.00 0.00 0.00 4.17
1599 2045 2.935238 GCAACTATTGGCAAGAGGTCGA 60.935 50.000 24.21 0.00 0.00 4.20
1612 2058 4.213564 AGAGGTCGATTTCTTTGCAGAT 57.786 40.909 0.00 0.00 0.00 2.90
1698 2146 9.547753 CACATACTACACAATAGCTAAATTCCT 57.452 33.333 0.00 0.00 0.00 3.36
1721 2169 5.940192 TTGGTACTTGCAGACAGTAATTG 57.060 39.130 0.00 0.00 0.00 2.32
1745 2193 2.871633 GTGTCAGGCAATTTTGGTTTGG 59.128 45.455 0.00 0.00 0.00 3.28
1746 2194 1.872952 GTCAGGCAATTTTGGTTTGGC 59.127 47.619 2.13 2.13 46.68 4.52
1749 2197 0.950836 GGCAATTTTGGTTTGGCACC 59.049 50.000 5.25 0.00 45.88 5.01
1849 2298 3.319137 TCACCTGATGTACTTGACAGC 57.681 47.619 0.00 0.00 45.09 4.40
1863 2312 1.160137 GACAGCGGCAGACTTCATTT 58.840 50.000 1.45 0.00 0.00 2.32
1871 2320 3.365820 CGGCAGACTTCATTTTCAATTGC 59.634 43.478 0.00 0.00 0.00 3.56
1967 2416 6.325993 TCATTGGGAGGAAGTATCAAATGA 57.674 37.500 0.00 0.00 32.93 2.57
1968 2417 6.730447 TCATTGGGAGGAAGTATCAAATGAA 58.270 36.000 0.00 0.00 32.67 2.57
2335 2790 4.640201 GCCATAAAGTTGAACAGCTGGATA 59.360 41.667 19.93 0.00 0.00 2.59
2361 2816 3.431626 CCACTTGGTGATTCGTATGCCTA 60.432 47.826 0.00 0.00 35.23 3.93
2386 2841 2.967459 TCTGCTTGTGCACATAAACG 57.033 45.000 22.39 8.71 45.31 3.60
2422 2877 6.712547 CACCTCAGAGTATTTTGGGATATTCC 59.287 42.308 0.00 0.00 35.23 3.01
2476 2931 4.136796 TCTTTGACAGTCACTTGATTGGG 58.863 43.478 1.52 0.00 36.27 4.12
2478 2933 4.371624 TTGACAGTCACTTGATTGGGAT 57.628 40.909 1.52 0.00 36.27 3.85
2515 2970 5.533154 AGAGTACGGATGTGAGAAGGATAAG 59.467 44.000 0.00 0.00 0.00 1.73
2549 3004 6.538742 GCTAAGTTGATATCAAGCAGGTGTAA 59.461 38.462 18.47 0.00 36.39 2.41
2627 3083 7.017319 ACTAGGTTTGCACTTAGTATTCCTT 57.983 36.000 0.00 0.00 42.51 3.36
2659 3115 4.218417 CCCACAAGCAACTTATTAGCAGTT 59.782 41.667 0.00 0.00 34.67 3.16
2800 3256 6.477033 AGCGTGAGATCATGTATGTCTTTAAC 59.523 38.462 4.10 0.00 35.38 2.01
2805 3261 9.803315 TGAGATCATGTATGTCTTTAACTGTAC 57.197 33.333 0.00 0.00 0.00 2.90
2893 3349 1.330655 CCCACTGTCCTGACGCCTAT 61.331 60.000 0.00 0.00 0.00 2.57
3019 3486 3.805823 CACCAAAAACTGTACGATTCCG 58.194 45.455 0.00 0.00 42.50 4.30
3052 3519 3.081061 TGGGATTCACTTTCATGGTTCG 58.919 45.455 0.00 0.00 0.00 3.95
3062 3529 5.759763 CACTTTCATGGTTCGGATGATGATA 59.240 40.000 0.00 0.00 29.96 2.15
3073 3540 7.307632 GGTTCGGATGATGATATCTCTTGTTTG 60.308 40.741 3.98 0.00 0.00 2.93
3083 3550 8.279970 TGATATCTCTTGTTTGTTATTGGGTG 57.720 34.615 3.98 0.00 0.00 4.61
3124 3591 4.440525 CCAGATAATGTTTGGCTGCGAAAT 60.441 41.667 12.85 0.47 0.00 2.17
3327 3796 0.956902 AAGCGCTGACATGATGTGCA 60.957 50.000 12.58 0.11 39.38 4.57
3346 3815 5.645929 TGTGCATCAACGGTTACTCAAATAT 59.354 36.000 0.00 0.00 0.00 1.28
3413 3882 8.888332 TGCATTCTTACATTTTGTTATGTACG 57.112 30.769 0.00 0.00 39.90 3.67
3636 4105 6.015940 GGTTTCATGACATCTTCAAGAAGGTT 60.016 38.462 9.73 0.00 41.67 3.50
3681 4150 8.308207 GTTTTCCTACCTGGCATAATTTTGTTA 58.692 33.333 0.00 0.00 35.26 2.41
3903 4373 2.159085 GGTCTGCACAGGTATGTAGTCC 60.159 54.545 0.00 0.00 37.65 3.85
3985 4455 1.786579 GTTGCTTTGAAACATCACCGC 59.213 47.619 0.00 0.00 0.00 5.68
4069 4540 6.878389 AGTTCTTTGTGAATCCTTCTGAGATC 59.122 38.462 0.00 0.00 36.99 2.75
4073 4544 5.850557 TGTGAATCCTTCTGAGATCTCTC 57.149 43.478 22.95 10.31 43.15 3.20
4226 4697 6.465948 AGATGCATTTAAAAGCAAATGGACA 58.534 32.000 20.65 0.00 45.25 4.02
4250 4721 8.713971 ACAAAGAAATCTTGGGAAAAGGTAAAT 58.286 29.630 2.76 0.00 36.12 1.40
4283 4755 9.783256 GTTTTACTGTATTCTTGTTGAAACTGT 57.217 29.630 0.00 0.00 38.29 3.55
4308 4780 2.436292 GCCAGACAGAGCCTGCTG 60.436 66.667 0.00 14.03 41.63 4.41
4468 4940 7.453393 TGGTTCCATGTCTATCTCCAATAATC 58.547 38.462 0.00 0.00 0.00 1.75
4471 4943 8.944029 GTTCCATGTCTATCTCCAATAATCATG 58.056 37.037 0.00 0.00 0.00 3.07
4584 5056 7.118496 AGTGTATTCCTTTCTGTATCTCCTG 57.882 40.000 0.00 0.00 0.00 3.86
4697 5169 3.193267 TGAAATCATTACTGGGCAGTTGC 59.807 43.478 0.00 0.00 42.54 4.17
4731 5203 6.463995 TGTTTACTCAGTGGCATTTTCTTT 57.536 33.333 0.00 0.00 0.00 2.52
4760 5232 9.787532 GCTGTGTATATGTTTACAATGTTGATT 57.212 29.630 0.00 0.00 34.05 2.57
4974 5446 2.289010 GGAAAGCATGGACAAGGGTTTG 60.289 50.000 0.00 0.00 40.24 2.93
5001 5474 9.520204 CTTGTCATTTCTACATGAGTTTGTTTT 57.480 29.630 0.00 0.00 33.69 2.43
5105 5579 7.759489 AGTCTATGTCTATCCATGACTTCTC 57.241 40.000 0.00 0.00 33.43 2.87
5161 5635 4.035017 GTGCTTGTGTTGTTGTACATGTC 58.965 43.478 0.00 0.00 0.00 3.06
5183 5657 3.125829 CCAACTTGGAATCACTGTGATCG 59.874 47.826 22.47 11.57 40.96 3.69
5199 5673 6.317140 ACTGTGATCGATGCATAAATTGTCTT 59.683 34.615 0.54 0.00 0.00 3.01
5592 6070 3.621715 GCTTAAATAGACAACCCACCTCG 59.378 47.826 0.00 0.00 0.00 4.63
5682 6160 3.648067 TCATCCTAGAAGGCATGGTAAGG 59.352 47.826 0.00 0.00 34.61 2.69
5733 6211 2.754552 TGAAGGCCATCACTAATTGCAC 59.245 45.455 6.57 0.00 0.00 4.57
5820 6298 4.194640 CTCGATCAAGATTGGAATGGTGT 58.805 43.478 0.00 0.00 0.00 4.16
5833 6311 5.595885 TGGAATGGTGTGTTGTTTTATGTG 58.404 37.500 0.00 0.00 0.00 3.21
5933 6413 8.448615 GTTACTGAAGTTCACAAACTACTGTTT 58.551 33.333 0.08 0.00 45.07 2.83
5994 6475 3.386726 AGTTTTTGGGTGGAAGGCTTTAC 59.613 43.478 0.00 4.08 0.00 2.01
6000 6481 1.132453 GGTGGAAGGCTTTACGATTGC 59.868 52.381 0.00 0.00 0.00 3.56
6027 6508 1.594331 AGTTCAACGAGGCCTGAAAC 58.406 50.000 12.00 7.10 33.52 2.78
6074 6555 6.769822 ACCAACCACATTGCATTCATTTTAAA 59.230 30.769 0.00 0.00 36.93 1.52
6112 6593 4.180817 CAATCCTACACTGAACGTATGCA 58.819 43.478 0.00 0.00 0.00 3.96
6117 6598 3.266510 ACACTGAACGTATGCATCCAT 57.733 42.857 0.19 0.00 35.44 3.41
6165 6646 3.446310 TTCGCTTGTTGTAGTGTGAGA 57.554 42.857 0.00 0.00 0.00 3.27
6167 6648 3.120792 TCGCTTGTTGTAGTGTGAGAAC 58.879 45.455 0.00 0.00 0.00 3.01
6168 6649 2.863740 CGCTTGTTGTAGTGTGAGAACA 59.136 45.455 0.00 0.00 31.29 3.18
6170 6651 4.024893 CGCTTGTTGTAGTGTGAGAACAAT 60.025 41.667 0.00 0.00 40.54 2.71
6245 6729 5.835113 ATAAGTGTAAATTGAGGCGCATT 57.165 34.783 10.83 0.00 0.00 3.56
6284 6768 1.574134 GCATATTGCGGCAAATTGCT 58.426 45.000 30.10 15.48 37.28 3.91
6292 6776 0.600782 CGGCAAATTGCTGGTGCTTT 60.601 50.000 18.45 0.00 45.66 3.51
6296 6780 1.529438 CAAATTGCTGGTGCTTTGCAG 59.471 47.619 0.00 0.00 40.08 4.41
6330 6818 1.578897 TGGGCTGGCTTGTGTAGATA 58.421 50.000 0.00 0.00 0.00 1.98
6332 6820 1.486726 GGGCTGGCTTGTGTAGATAGT 59.513 52.381 0.00 0.00 0.00 2.12
6333 6821 2.092914 GGGCTGGCTTGTGTAGATAGTT 60.093 50.000 0.00 0.00 0.00 2.24
6375 6863 8.950208 TGGTTTTGATTCTTTTATCGGTTTTT 57.050 26.923 0.00 0.00 0.00 1.94
6447 6935 8.842358 TCTACGAAAAAGATACAAACCAATCT 57.158 30.769 0.00 0.00 33.87 2.40
6465 6953 2.824041 GTGCCTACCGTGCATGGG 60.824 66.667 28.37 16.88 41.46 4.00
6466 6954 3.326578 TGCCTACCGTGCATGGGT 61.327 61.111 28.37 21.57 41.62 4.51
6467 6955 1.990614 TGCCTACCGTGCATGGGTA 60.991 57.895 28.37 21.53 38.99 3.69
6468 6956 1.523032 GCCTACCGTGCATGGGTAC 60.523 63.158 28.37 11.37 38.99 3.34
6469 6957 1.968050 GCCTACCGTGCATGGGTACT 61.968 60.000 28.37 10.38 38.99 2.73
6470 6958 0.179084 CCTACCGTGCATGGGTACTG 60.179 60.000 28.37 12.96 38.99 2.74
6471 6959 0.535335 CTACCGTGCATGGGTACTGT 59.465 55.000 28.37 9.25 38.99 3.55
6472 6960 0.248012 TACCGTGCATGGGTACTGTG 59.752 55.000 28.37 1.41 38.99 3.66
6473 6961 1.003839 CCGTGCATGGGTACTGTGT 60.004 57.895 17.90 0.00 0.00 3.72
6474 6962 0.605319 CCGTGCATGGGTACTGTGTT 60.605 55.000 17.90 0.00 0.00 3.32
6475 6963 1.338294 CCGTGCATGGGTACTGTGTTA 60.338 52.381 17.90 0.00 0.00 2.41
6476 6964 2.627945 CGTGCATGGGTACTGTGTTAT 58.372 47.619 0.00 0.00 0.00 1.89
6477 6965 3.006940 CGTGCATGGGTACTGTGTTATT 58.993 45.455 0.00 0.00 0.00 1.40
6478 6966 3.181511 CGTGCATGGGTACTGTGTTATTG 60.182 47.826 0.00 0.00 0.00 1.90
6479 6967 4.006989 GTGCATGGGTACTGTGTTATTGA 58.993 43.478 0.00 0.00 0.00 2.57
6480 6968 4.457603 GTGCATGGGTACTGTGTTATTGAA 59.542 41.667 0.00 0.00 0.00 2.69
6481 6969 4.699735 TGCATGGGTACTGTGTTATTGAAG 59.300 41.667 0.00 0.00 0.00 3.02
6482 6970 4.438744 GCATGGGTACTGTGTTATTGAAGC 60.439 45.833 0.00 0.00 0.00 3.86
6483 6971 4.359434 TGGGTACTGTGTTATTGAAGCA 57.641 40.909 0.00 0.00 0.00 3.91
6484 6972 4.720046 TGGGTACTGTGTTATTGAAGCAA 58.280 39.130 0.00 0.00 0.00 3.91
6485 6973 5.321102 TGGGTACTGTGTTATTGAAGCAAT 58.679 37.500 0.00 0.00 37.80 3.56
6486 6974 5.414454 TGGGTACTGTGTTATTGAAGCAATC 59.586 40.000 0.00 0.00 35.54 2.67
6487 6975 5.648092 GGGTACTGTGTTATTGAAGCAATCT 59.352 40.000 0.00 0.00 35.54 2.40
6488 6976 6.821665 GGGTACTGTGTTATTGAAGCAATCTA 59.178 38.462 0.00 0.00 35.54 1.98
6489 6977 7.201617 GGGTACTGTGTTATTGAAGCAATCTAC 60.202 40.741 0.00 0.00 35.54 2.59
6490 6978 6.408858 ACTGTGTTATTGAAGCAATCTACG 57.591 37.500 0.00 0.00 35.54 3.51
6491 6979 6.163476 ACTGTGTTATTGAAGCAATCTACGA 58.837 36.000 0.00 0.00 35.54 3.43
6492 6980 6.649141 ACTGTGTTATTGAAGCAATCTACGAA 59.351 34.615 0.00 0.00 35.54 3.85
6493 6981 7.172532 ACTGTGTTATTGAAGCAATCTACGAAA 59.827 33.333 0.00 0.00 35.54 3.46
6494 6982 7.866729 TGTGTTATTGAAGCAATCTACGAAAA 58.133 30.769 0.00 0.00 35.54 2.29
6495 6983 8.346300 TGTGTTATTGAAGCAATCTACGAAAAA 58.654 29.630 0.00 0.00 35.54 1.94
6496 6984 8.840867 GTGTTATTGAAGCAATCTACGAAAAAG 58.159 33.333 0.00 0.00 35.54 2.27
6497 6985 8.779303 TGTTATTGAAGCAATCTACGAAAAAGA 58.221 29.630 0.00 0.00 35.54 2.52
6498 6986 9.774742 GTTATTGAAGCAATCTACGAAAAAGAT 57.225 29.630 0.00 0.00 35.54 2.40
6501 6989 7.899178 TGAAGCAATCTACGAAAAAGATACA 57.101 32.000 0.00 0.00 33.32 2.29
6502 6990 8.317891 TGAAGCAATCTACGAAAAAGATACAA 57.682 30.769 0.00 0.00 33.32 2.41
6503 6991 8.779303 TGAAGCAATCTACGAAAAAGATACAAA 58.221 29.630 0.00 0.00 33.32 2.83
6504 6992 8.950403 AAGCAATCTACGAAAAAGATACAAAC 57.050 30.769 0.00 0.00 33.32 2.93
6505 6993 7.527457 AGCAATCTACGAAAAAGATACAAACC 58.473 34.615 0.00 0.00 33.32 3.27
6506 6994 7.174253 AGCAATCTACGAAAAAGATACAAACCA 59.826 33.333 0.00 0.00 33.32 3.67
6507 6995 7.806014 GCAATCTACGAAAAAGATACAAACCAA 59.194 33.333 0.00 0.00 33.32 3.67
6508 6996 9.672086 CAATCTACGAAAAAGATACAAACCAAA 57.328 29.630 0.00 0.00 33.32 3.28
6509 6997 9.673454 AATCTACGAAAAAGATACAAACCAAAC 57.327 29.630 0.00 0.00 33.32 2.93
6510 6998 7.641760 TCTACGAAAAAGATACAAACCAAACC 58.358 34.615 0.00 0.00 0.00 3.27
6511 6999 6.210287 ACGAAAAAGATACAAACCAAACCA 57.790 33.333 0.00 0.00 0.00 3.67
6512 7000 6.631962 ACGAAAAAGATACAAACCAAACCAA 58.368 32.000 0.00 0.00 0.00 3.67
6513 7001 7.269316 ACGAAAAAGATACAAACCAAACCAAT 58.731 30.769 0.00 0.00 0.00 3.16
6514 7002 7.436970 ACGAAAAAGATACAAACCAAACCAATC 59.563 33.333 0.00 0.00 0.00 2.67
6515 7003 7.651704 CGAAAAAGATACAAACCAAACCAATCT 59.348 33.333 0.00 0.00 0.00 2.40
6516 7004 8.887036 AAAAAGATACAAACCAAACCAATCTC 57.113 30.769 0.00 0.00 0.00 2.75
6517 7005 7.595819 AAAGATACAAACCAAACCAATCTCA 57.404 32.000 0.00 0.00 0.00 3.27
6518 7006 7.781324 AAGATACAAACCAAACCAATCTCAT 57.219 32.000 0.00 0.00 0.00 2.90
6519 7007 7.161773 AGATACAAACCAAACCAATCTCATG 57.838 36.000 0.00 0.00 0.00 3.07
6520 7008 6.721208 AGATACAAACCAAACCAATCTCATGT 59.279 34.615 0.00 0.00 0.00 3.21
6521 7009 5.200368 ACAAACCAAACCAATCTCATGTC 57.800 39.130 0.00 0.00 0.00 3.06
6522 7010 4.895297 ACAAACCAAACCAATCTCATGTCT 59.105 37.500 0.00 0.00 0.00 3.41
6523 7011 5.010012 ACAAACCAAACCAATCTCATGTCTC 59.990 40.000 0.00 0.00 0.00 3.36
6524 7012 4.371624 ACCAAACCAATCTCATGTCTCA 57.628 40.909 0.00 0.00 0.00 3.27
6525 7013 4.927049 ACCAAACCAATCTCATGTCTCAT 58.073 39.130 0.00 0.00 0.00 2.90
6526 7014 5.327732 ACCAAACCAATCTCATGTCTCATT 58.672 37.500 0.00 0.00 0.00 2.57
6527 7015 5.184479 ACCAAACCAATCTCATGTCTCATTG 59.816 40.000 0.00 0.00 0.00 2.82
6529 7017 3.894759 ACCAATCTCATGTCTCATTGGG 58.105 45.455 21.23 7.70 46.63 4.12
6530 7018 3.267812 ACCAATCTCATGTCTCATTGGGT 59.732 43.478 21.23 8.16 46.63 4.51
6531 7019 4.474651 ACCAATCTCATGTCTCATTGGGTA 59.525 41.667 21.23 0.00 46.63 3.69
6532 7020 5.044919 ACCAATCTCATGTCTCATTGGGTAA 60.045 40.000 21.23 0.00 46.63 2.85
6533 7021 6.066690 CCAATCTCATGTCTCATTGGGTAAT 58.933 40.000 14.68 0.00 41.11 1.89
6534 7022 7.147320 ACCAATCTCATGTCTCATTGGGTAATA 60.147 37.037 21.23 0.00 46.63 0.98
6535 7023 7.173907 CCAATCTCATGTCTCATTGGGTAATAC 59.826 40.741 14.68 0.00 41.11 1.89
6536 7024 7.623999 ATCTCATGTCTCATTGGGTAATACT 57.376 36.000 0.00 0.00 0.00 2.12
6537 7025 7.055667 TCTCATGTCTCATTGGGTAATACTC 57.944 40.000 0.00 0.00 0.00 2.59
6538 7026 6.042093 TCTCATGTCTCATTGGGTAATACTCC 59.958 42.308 0.00 0.00 0.00 3.85
6539 7027 5.071788 TCATGTCTCATTGGGTAATACTCCC 59.928 44.000 0.00 0.00 44.81 4.30
6540 7028 4.631234 TGTCTCATTGGGTAATACTCCCT 58.369 43.478 2.65 0.00 44.84 4.20
6541 7029 4.654262 TGTCTCATTGGGTAATACTCCCTC 59.346 45.833 2.65 0.00 44.84 4.30
6542 7030 4.040584 GTCTCATTGGGTAATACTCCCTCC 59.959 50.000 2.65 0.00 44.84 4.30
6543 7031 2.969950 TCATTGGGTAATACTCCCTCCG 59.030 50.000 2.65 0.00 44.84 4.63
6544 7032 2.555732 TTGGGTAATACTCCCTCCGT 57.444 50.000 2.65 0.00 44.84 4.69
6545 7033 2.555732 TGGGTAATACTCCCTCCGTT 57.444 50.000 2.65 0.00 44.84 4.44
6546 7034 2.391678 TGGGTAATACTCCCTCCGTTC 58.608 52.381 2.65 0.00 44.84 3.95
6547 7035 1.339291 GGGTAATACTCCCTCCGTTCG 59.661 57.143 0.00 0.00 41.58 3.95
6548 7036 2.027385 GGTAATACTCCCTCCGTTCGT 58.973 52.381 0.00 0.00 0.00 3.85
6549 7037 2.033927 GGTAATACTCCCTCCGTTCGTC 59.966 54.545 0.00 0.00 0.00 4.20
6550 7038 2.140839 AATACTCCCTCCGTTCGTCT 57.859 50.000 0.00 0.00 0.00 4.18
6551 7039 3.287867 AATACTCCCTCCGTTCGTCTA 57.712 47.619 0.00 0.00 0.00 2.59
6552 7040 2.322355 TACTCCCTCCGTTCGTCTAG 57.678 55.000 0.00 0.00 0.00 2.43
6553 7041 0.617413 ACTCCCTCCGTTCGTCTAGA 59.383 55.000 0.00 0.00 0.00 2.43
6554 7042 1.212441 ACTCCCTCCGTTCGTCTAGAT 59.788 52.381 0.00 0.00 0.00 1.98
6555 7043 2.437281 ACTCCCTCCGTTCGTCTAGATA 59.563 50.000 0.00 0.00 0.00 1.98
6556 7044 2.807392 CTCCCTCCGTTCGTCTAGATAC 59.193 54.545 0.00 0.00 0.00 2.24
6557 7045 2.171237 TCCCTCCGTTCGTCTAGATACA 59.829 50.000 0.00 0.00 0.00 2.29
6558 7046 3.147629 CCCTCCGTTCGTCTAGATACAT 58.852 50.000 0.00 0.00 0.00 2.29
6559 7047 3.188873 CCCTCCGTTCGTCTAGATACATC 59.811 52.174 0.00 0.00 0.00 3.06
6560 7048 3.188873 CCTCCGTTCGTCTAGATACATCC 59.811 52.174 0.00 0.00 0.00 3.51
6561 7049 3.812262 TCCGTTCGTCTAGATACATCCA 58.188 45.455 0.00 0.00 0.00 3.41
6562 7050 4.395625 TCCGTTCGTCTAGATACATCCAT 58.604 43.478 0.00 0.00 0.00 3.41
6563 7051 4.825634 TCCGTTCGTCTAGATACATCCATT 59.174 41.667 0.00 0.00 0.00 3.16
6564 7052 5.301045 TCCGTTCGTCTAGATACATCCATTT 59.699 40.000 0.00 0.00 0.00 2.32
6565 7053 5.629849 CCGTTCGTCTAGATACATCCATTTC 59.370 44.000 0.00 0.00 0.00 2.17
6566 7054 6.439599 CGTTCGTCTAGATACATCCATTTCT 58.560 40.000 0.00 0.00 0.00 2.52
6567 7055 6.360947 CGTTCGTCTAGATACATCCATTTCTG 59.639 42.308 0.00 0.00 0.00 3.02
6568 7056 6.961360 TCGTCTAGATACATCCATTTCTGT 57.039 37.500 0.00 0.00 0.00 3.41
6569 7057 6.739112 TCGTCTAGATACATCCATTTCTGTG 58.261 40.000 0.00 0.00 0.00 3.66
6570 7058 6.546034 TCGTCTAGATACATCCATTTCTGTGA 59.454 38.462 0.00 0.00 0.00 3.58
6571 7059 6.638873 CGTCTAGATACATCCATTTCTGTGAC 59.361 42.308 0.00 0.00 0.00 3.67
6572 7060 7.492524 GTCTAGATACATCCATTTCTGTGACA 58.507 38.462 0.00 0.00 0.00 3.58
6573 7061 7.981789 GTCTAGATACATCCATTTCTGTGACAA 59.018 37.037 0.00 0.00 0.00 3.18
6574 7062 6.992063 AGATACATCCATTTCTGTGACAAC 57.008 37.500 0.00 0.00 0.00 3.32
6575 7063 6.715280 AGATACATCCATTTCTGTGACAACT 58.285 36.000 0.00 0.00 0.00 3.16
6576 7064 7.851228 AGATACATCCATTTCTGTGACAACTA 58.149 34.615 0.00 0.00 0.00 2.24
6577 7065 8.321353 AGATACATCCATTTCTGTGACAACTAA 58.679 33.333 0.00 0.00 0.00 2.24
6578 7066 6.560253 ACATCCATTTCTGTGACAACTAAC 57.440 37.500 0.00 0.00 0.00 2.34
6579 7067 6.299141 ACATCCATTTCTGTGACAACTAACT 58.701 36.000 0.00 0.00 0.00 2.24
6580 7068 6.428159 ACATCCATTTCTGTGACAACTAACTC 59.572 38.462 0.00 0.00 0.00 3.01
6581 7069 5.305585 TCCATTTCTGTGACAACTAACTCC 58.694 41.667 0.00 0.00 0.00 3.85
6582 7070 4.152402 CCATTTCTGTGACAACTAACTCCG 59.848 45.833 0.00 0.00 0.00 4.63
6583 7071 4.659111 TTTCTGTGACAACTAACTCCGA 57.341 40.909 0.00 0.00 0.00 4.55
6584 7072 4.659111 TTCTGTGACAACTAACTCCGAA 57.341 40.909 0.00 0.00 0.00 4.30
6585 7073 3.973657 TCTGTGACAACTAACTCCGAAC 58.026 45.455 0.00 0.00 0.00 3.95
6586 7074 2.724690 CTGTGACAACTAACTCCGAACG 59.275 50.000 0.00 0.00 0.00 3.95
6587 7075 2.056577 GTGACAACTAACTCCGAACGG 58.943 52.381 6.94 6.94 0.00 4.44
6588 7076 1.955778 TGACAACTAACTCCGAACGGA 59.044 47.619 15.13 15.13 42.90 4.69
6729 7220 0.439985 CGTCAACTTGTGGCTGATCG 59.560 55.000 0.00 0.00 0.00 3.69
6762 7253 3.241701 CACATATTTTGCGTTTCGGCTT 58.758 40.909 0.00 0.00 0.00 4.35
6763 7254 3.059306 CACATATTTTGCGTTTCGGCTTG 59.941 43.478 0.00 0.00 0.00 4.01
6769 7260 2.010817 GCGTTTCGGCTTGCTGTTG 61.011 57.895 1.11 0.00 0.00 3.33
6780 7271 2.144833 TTGCTGTTGCCCGAATGCTG 62.145 55.000 0.00 0.00 38.71 4.41
6783 7274 2.126346 GTTGCCCGAATGCTGTGC 60.126 61.111 0.00 0.00 0.00 4.57
6787 7278 3.044059 GCCCGAATGCTGTGCTGAC 62.044 63.158 0.00 0.00 0.00 3.51
6800 7291 1.063174 GTGCTGACGATGATTTCCTGC 59.937 52.381 0.00 0.00 0.00 4.85
6807 7298 2.141517 CGATGATTTCCTGCTAGCTGG 58.858 52.381 29.57 29.57 36.53 4.85
6850 7341 1.173043 TCATGAAATGGTTGGGCGTC 58.827 50.000 0.00 0.00 46.73 5.19
6902 7393 1.403780 CCTCCGTGCTTGTACACCTAC 60.404 57.143 0.00 0.00 37.25 3.18
6904 7395 0.734942 CCGTGCTTGTACACCTACGG 60.735 60.000 21.95 21.95 43.93 4.02
6923 7414 1.785951 CTGAGCATGAGCACACACG 59.214 57.895 0.00 0.00 45.49 4.49
6927 7418 3.714963 CATGAGCACACACGCGCA 61.715 61.111 5.73 0.00 45.89 6.09
7021 7512 9.799106 AGTTTGATGGGGAGATTATAGTTTATG 57.201 33.333 0.00 0.00 0.00 1.90
7023 7514 9.793259 TTTGATGGGGAGATTATAGTTTATGTC 57.207 33.333 0.00 0.00 0.00 3.06
7024 7515 8.504811 TGATGGGGAGATTATAGTTTATGTCA 57.495 34.615 0.00 0.00 0.00 3.58
7076 7567 2.880963 TGTTTTGCCTGCCAAACTAC 57.119 45.000 16.63 1.15 42.81 2.73
7117 7608 7.648142 TGTTACACCTCTTGTCATTCATTTTC 58.352 34.615 0.00 0.00 39.91 2.29
7118 7609 7.502226 TGTTACACCTCTTGTCATTCATTTTCT 59.498 33.333 0.00 0.00 39.91 2.52
7159 7650 7.931015 ATCATTCCTAAATCCTAGTGGTGTA 57.069 36.000 0.00 0.00 34.23 2.90
7176 7667 8.941995 AGTGGTGTAGTCATATGTAGATATGT 57.058 34.615 16.96 4.49 41.59 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.128200 GGTTTTCTGCCCCCAACTTT 58.872 50.000 0.00 0.00 0.00 2.66
42 43 9.720769 CTCTAAAGTTATGGACACTTTTAAGGA 57.279 33.333 3.53 0.00 40.83 3.36
69 70 5.185828 GGGAAGAATGCCACTTTTACAGAAT 59.814 40.000 0.00 0.00 32.29 2.40
70 71 4.522789 GGGAAGAATGCCACTTTTACAGAA 59.477 41.667 0.00 0.00 32.29 3.02
74 75 2.415491 GCGGGAAGAATGCCACTTTTAC 60.415 50.000 0.00 0.00 32.29 2.01
75 76 1.816224 GCGGGAAGAATGCCACTTTTA 59.184 47.619 0.00 0.00 32.29 1.52
76 77 0.603065 GCGGGAAGAATGCCACTTTT 59.397 50.000 0.00 0.00 32.29 2.27
80 81 1.244019 ACTTGCGGGAAGAATGCCAC 61.244 55.000 16.51 0.00 32.29 5.01
81 82 0.539438 AACTTGCGGGAAGAATGCCA 60.539 50.000 16.51 0.00 32.29 4.92
82 83 0.603065 AAACTTGCGGGAAGAATGCC 59.397 50.000 16.51 0.00 35.42 4.40
84 85 3.117434 CGTAAACTTGCGGGAAGAATG 57.883 47.619 16.51 3.09 35.42 2.67
120 124 0.179067 TAGCCCGCCAAAAGGATACG 60.179 55.000 0.00 0.00 46.39 3.06
126 130 2.479560 GCAGTTATTAGCCCGCCAAAAG 60.480 50.000 0.00 0.00 0.00 2.27
149 153 1.201965 GGAGCAAGCGATGAAGTTTCG 60.202 52.381 0.00 0.00 39.55 3.46
283 287 2.203098 CGAAACGGTGTGTGGGGT 60.203 61.111 0.00 0.00 0.00 4.95
296 300 3.777910 GCGAGGGGTAGGGCGAAA 61.778 66.667 0.00 0.00 0.00 3.46
330 334 2.669569 GCACATGTGACAGCGGGT 60.670 61.111 29.80 0.00 0.00 5.28
355 359 2.847366 TAATTGCCCAAGACCCGCCC 62.847 60.000 0.00 0.00 0.00 6.13
482 490 0.229753 GTATTCCATCGCGCGTGAAG 59.770 55.000 30.98 22.23 0.00 3.02
484 492 0.458716 TTGTATTCCATCGCGCGTGA 60.459 50.000 30.98 26.23 0.00 4.35
488 496 3.064207 TCCTATTTGTATTCCATCGCGC 58.936 45.455 0.00 0.00 0.00 6.86
489 497 4.031765 CGATCCTATTTGTATTCCATCGCG 59.968 45.833 0.00 0.00 0.00 5.87
497 505 6.328148 TCCAACCCTACGATCCTATTTGTATT 59.672 38.462 0.00 0.00 0.00 1.89
538 546 4.967442 TGTCTCATTCTCTTGATCAGGGAT 59.033 41.667 4.83 0.00 29.23 3.85
560 568 5.181811 TGATGCCGATAGATTAGCCAAATTG 59.818 40.000 0.00 0.00 39.76 2.32
563 571 4.065088 GTGATGCCGATAGATTAGCCAAA 58.935 43.478 0.00 0.00 39.76 3.28
637 659 7.331440 GGAATATCAGTAGTGAGATCAAGCATG 59.669 40.741 8.11 0.00 33.32 4.06
671 693 0.770499 TCCATGCTGGAACACAAGGA 59.230 50.000 2.78 0.00 45.00 3.36
737 1098 9.663904 GTTGTCTTTCTTTTTGCTTTTCTTTTT 57.336 25.926 0.00 0.00 0.00 1.94
738 1099 9.056005 AGTTGTCTTTCTTTTTGCTTTTCTTTT 57.944 25.926 0.00 0.00 0.00 2.27
739 1100 8.607441 AGTTGTCTTTCTTTTTGCTTTTCTTT 57.393 26.923 0.00 0.00 0.00 2.52
740 1101 8.607441 AAGTTGTCTTTCTTTTTGCTTTTCTT 57.393 26.923 0.00 0.00 0.00 2.52
741 1102 7.331934 GGAAGTTGTCTTTCTTTTTGCTTTTCT 59.668 33.333 0.00 0.00 33.64 2.52
742 1103 7.331934 AGGAAGTTGTCTTTCTTTTTGCTTTTC 59.668 33.333 0.00 0.00 36.17 2.29
743 1104 7.161404 AGGAAGTTGTCTTTCTTTTTGCTTTT 58.839 30.769 0.00 0.00 36.17 2.27
744 1105 6.701340 AGGAAGTTGTCTTTCTTTTTGCTTT 58.299 32.000 0.00 0.00 36.17 3.51
745 1106 6.153510 AGAGGAAGTTGTCTTTCTTTTTGCTT 59.846 34.615 0.00 0.00 39.41 3.91
746 1107 5.654209 AGAGGAAGTTGTCTTTCTTTTTGCT 59.346 36.000 0.00 0.00 39.41 3.91
747 1108 5.895928 AGAGGAAGTTGTCTTTCTTTTTGC 58.104 37.500 0.00 0.00 39.41 3.68
748 1109 8.678199 AGTTAGAGGAAGTTGTCTTTCTTTTTG 58.322 33.333 0.00 0.00 39.41 2.44
749 1110 8.809468 AGTTAGAGGAAGTTGTCTTTCTTTTT 57.191 30.769 0.00 0.00 39.41 1.94
750 1111 8.809468 AAGTTAGAGGAAGTTGTCTTTCTTTT 57.191 30.769 0.00 0.00 39.41 2.27
751 1112 8.809468 AAAGTTAGAGGAAGTTGTCTTTCTTT 57.191 30.769 0.00 0.00 39.41 2.52
752 1113 8.809468 AAAAGTTAGAGGAAGTTGTCTTTCTT 57.191 30.769 0.00 0.00 39.41 2.52
753 1114 8.809468 AAAAAGTTAGAGGAAGTTGTCTTTCT 57.191 30.769 0.00 0.00 41.77 2.52
776 1137 8.614469 AAAAGTTGGATTCTCAACAACAAAAA 57.386 26.923 15.69 0.00 46.74 1.94
777 1138 8.614469 AAAAAGTTGGATTCTCAACAACAAAA 57.386 26.923 15.69 0.00 46.74 2.44
831 1224 1.299648 CAGGGGGTCTCATCGCAAA 59.700 57.895 0.00 0.00 0.00 3.68
863 1271 1.002134 GCCAGCCCAACTTCTGCTA 60.002 57.895 0.00 0.00 33.16 3.49
938 1346 1.580815 GCTACAGATGCTCTTGCCTC 58.419 55.000 0.00 0.00 38.71 4.70
976 1385 1.000385 GAGAGTCGCTGCAGATGCTAT 60.000 52.381 20.43 8.30 42.66 2.97
977 1386 0.383590 GAGAGTCGCTGCAGATGCTA 59.616 55.000 20.43 0.00 42.66 3.49
986 1395 0.096628 GCAATTGCAGAGAGTCGCTG 59.903 55.000 25.36 18.55 41.59 5.18
1151 1560 2.279120 CGACGAGCTCTCCATGCC 60.279 66.667 12.85 0.00 0.00 4.40
1380 1790 2.436542 TGGAAAAGGGTCAGAAGACGAA 59.563 45.455 0.00 0.00 45.92 3.85
1492 1902 4.510711 AGCAACATGATCGATCAATCAGAC 59.489 41.667 30.41 18.05 40.69 3.51
1523 1933 0.535102 CCACCACCACCACTTGAGTC 60.535 60.000 0.00 0.00 0.00 3.36
1533 1943 2.927028 ACTTGTCTTTACCACCACCAC 58.073 47.619 0.00 0.00 0.00 4.16
1535 1945 4.514066 CACTAACTTGTCTTTACCACCACC 59.486 45.833 0.00 0.00 0.00 4.61
1569 1979 7.094890 CCTCTTGCCAATAGTTGCTAATATCTG 60.095 40.741 0.00 0.00 0.00 2.90
1599 2045 5.300286 GCCCATACTACATCTGCAAAGAAAT 59.700 40.000 0.00 0.00 0.00 2.17
1612 2058 7.180946 AGCAGATATTTGATAGCCCATACTACA 59.819 37.037 0.00 0.00 0.00 2.74
1665 2112 6.986817 AGCTATTGTGTAGTATGTGTCCATTC 59.013 38.462 0.00 0.00 32.29 2.67
1698 2146 5.240623 CCAATTACTGTCTGCAAGTACCAAA 59.759 40.000 0.00 0.00 33.76 3.28
1721 2169 1.412343 ACCAAAATTGCCTGACACACC 59.588 47.619 0.00 0.00 0.00 4.16
1751 2199 1.081840 GTTTTGCACCTGCTCGAGC 60.082 57.895 30.42 30.42 42.66 5.03
1752 2200 1.576421 GGTTTTGCACCTGCTCGAG 59.424 57.895 8.45 8.45 43.29 4.04
1753 2201 3.744559 GGTTTTGCACCTGCTCGA 58.255 55.556 0.00 0.00 43.29 4.04
1765 2213 3.056891 CCGTGCCATCAGTAATTGGTTTT 60.057 43.478 0.00 0.00 35.34 2.43
1849 2298 3.365820 GCAATTGAAAATGAAGTCTGCCG 59.634 43.478 10.34 0.00 0.00 5.69
1897 2346 4.574828 GCCTAGTTCAAGTGAGTTGTTTCA 59.425 41.667 0.00 0.00 37.43 2.69
2102 2557 2.288825 TGTTCAAAACGCCACACCAAAA 60.289 40.909 0.00 0.00 0.00 2.44
2386 2841 3.350833 ACTCTGAGGTGAAATGGCATTC 58.649 45.455 14.04 7.83 0.00 2.67
2422 2877 6.966021 TCTTTGACCCTTTCTTCGTAAAATG 58.034 36.000 0.00 0.00 0.00 2.32
2463 2918 4.039124 ACCAAAACATCCCAATCAAGTGAC 59.961 41.667 0.00 0.00 0.00 3.67
2476 2931 5.237779 TCCGTACTCTTTTGACCAAAACATC 59.762 40.000 4.00 0.00 35.57 3.06
2478 2933 4.515361 TCCGTACTCTTTTGACCAAAACA 58.485 39.130 4.00 0.00 35.57 2.83
2627 3083 3.164268 AGTTGCTTGTGGGCATAAATCA 58.836 40.909 0.00 0.00 42.09 2.57
2634 3090 2.491693 GCTAATAAGTTGCTTGTGGGCA 59.508 45.455 0.00 0.00 40.74 5.36
2659 3115 2.496070 ACTGCGACAGGTTAATGCTAGA 59.504 45.455 10.80 0.00 35.51 2.43
2805 3261 3.273434 TCGAAAGGATGAAAGAGCATGG 58.727 45.455 0.00 0.00 0.00 3.66
2835 3291 4.007659 CCTTACCGCCTTAAGAACAATGT 58.992 43.478 3.36 0.00 31.60 2.71
2879 3335 1.517361 CTGCATAGGCGTCAGGACA 59.483 57.895 0.00 0.00 45.35 4.02
2893 3349 2.360350 GTGCCTGCCTTAGCTGCA 60.360 61.111 1.02 0.00 42.54 4.41
3019 3486 4.292977 GTGAATCCCACGAATCATTTCC 57.707 45.455 0.00 0.00 35.86 3.13
3062 3529 6.068010 TGACACCCAATAACAAACAAGAGAT 58.932 36.000 0.00 0.00 0.00 2.75
3073 3540 1.750778 CTGCCCATGACACCCAATAAC 59.249 52.381 0.00 0.00 0.00 1.89
3104 3571 6.494842 TCTAATTTCGCAGCCAAACATTATC 58.505 36.000 0.00 0.00 0.00 1.75
3124 3591 5.415701 GGTTTGGAGTGATTTGCAGATCTAA 59.584 40.000 17.28 0.00 0.00 2.10
3280 3748 3.434641 CAGAGAAGCAATCATGAACGTGT 59.565 43.478 0.00 0.00 0.00 4.49
3286 3754 1.918262 ACCCCAGAGAAGCAATCATGA 59.082 47.619 0.00 0.00 0.00 3.07
3327 3796 9.607988 TGTGATAATATTTGAGTAACCGTTGAT 57.392 29.630 0.00 0.00 0.00 2.57
3413 3882 4.817464 TGTACCTTCACCACACAACAATAC 59.183 41.667 0.00 0.00 0.00 1.89
3636 4105 9.423964 AGGAAAACCTTGTTACAATTTACCTTA 57.576 29.630 0.00 0.00 0.00 2.69
3681 4150 7.970061 CGACCAGAAATTATCACAACAATGAAT 59.030 33.333 0.00 0.00 30.82 2.57
3903 4373 9.165035 AGACCAATAAAACATTAATGCAATTGG 57.835 29.630 28.53 28.53 44.87 3.16
3985 4455 8.408601 CAGGTTGAATGGTCTTTCATATTAAGG 58.591 37.037 1.10 0.00 35.64 2.69
4109 4580 4.260091 GCAAAAACTTCTGCAAGCTTCAAG 60.260 41.667 0.00 0.00 38.48 3.02
4283 4755 2.040278 AGGCTCTGTCTGGCATTTTGTA 59.960 45.455 0.00 0.00 0.00 2.41
4528 5000 7.981789 TCACTGAGCGAGTTATTGATTTCTAAT 59.018 33.333 0.00 0.00 29.75 1.73
4584 5056 3.572255 TCAAATCCACCAACAAAGCTACC 59.428 43.478 0.00 0.00 0.00 3.18
4697 5169 9.325198 TGCCACTGAGTAAACATAGTTTATATG 57.675 33.333 5.73 0.00 0.00 1.78
4731 5203 8.450180 CAACATTGTAAACATATACACAGCTGA 58.550 33.333 23.35 0.00 35.60 4.26
4760 5232 6.181908 ACAAACTTAAGGTTGGTTGTACAGA 58.818 36.000 31.34 0.00 38.85 3.41
4940 5412 3.695830 TGCTTTCCAGTAGTTCCGAAT 57.304 42.857 0.00 0.00 0.00 3.34
4974 5446 6.672147 ACAAACTCATGTAGAAATGACAAGC 58.328 36.000 0.00 0.00 33.08 4.01
5001 5474 1.867233 GGAGCGATACGTTACTACCGA 59.133 52.381 0.00 0.00 0.00 4.69
5063 5537 8.641541 ACATAGACTTCAATGTGAACCATTTTT 58.358 29.630 0.00 0.00 41.93 1.94
5105 5579 5.396362 CACGAACACACTTTCAGCTTAATTG 59.604 40.000 0.00 0.00 0.00 2.32
5161 5635 3.125829 CGATCACAGTGATTCCAAGTTGG 59.874 47.826 17.43 16.36 37.20 3.77
5549 6027 9.842775 TTAAGCATCTGAGACAATCAATAGAAT 57.157 29.630 0.00 0.00 37.52 2.40
5592 6070 6.858993 CGCTAGACAAATCTATTACCTGAGAC 59.141 42.308 0.00 0.00 36.81 3.36
5682 6160 0.388659 TGTGCCAACTTGTGAATGCC 59.611 50.000 0.00 0.00 0.00 4.40
5797 6275 3.562973 CACCATTCCAATCTTGATCGAGG 59.437 47.826 10.19 0.00 0.00 4.63
5994 6475 3.218398 GTTGAACTTGAAGACGCAATCG 58.782 45.455 0.00 0.00 42.43 3.34
6000 6481 1.192534 GCCTCGTTGAACTTGAAGACG 59.807 52.381 0.00 0.00 35.24 4.18
6027 6508 1.030488 CATGCAGGGGCTTCAGAGTG 61.030 60.000 0.00 0.00 41.91 3.51
6074 6555 7.012704 GTGTAGGATTGCATCAGTAATCAATGT 59.987 37.037 8.21 0.00 45.31 2.71
6112 6593 4.987963 TCCACTTGCTATCATCATGGAT 57.012 40.909 0.00 0.00 29.85 3.41
6117 6598 7.828717 TGTAATTTCTTCCACTTGCTATCATCA 59.171 33.333 0.00 0.00 0.00 3.07
6240 6724 4.270808 GCAAATAGGGAATTCCAAAATGCG 59.729 41.667 25.67 9.29 38.24 4.73
6245 6729 2.167487 GCGGCAAATAGGGAATTCCAAA 59.833 45.455 25.67 13.20 38.24 3.28
6280 6764 1.457823 CCTCTGCAAAGCACCAGCAA 61.458 55.000 0.00 0.00 45.49 3.91
6284 6768 2.598394 GCCCTCTGCAAAGCACCA 60.598 61.111 0.00 0.00 40.77 4.17
6287 6771 2.359107 CTCGCCCTCTGCAAAGCA 60.359 61.111 0.00 0.00 41.33 3.91
6350 6838 8.950208 AAAAACCGATAAAAGAATCAAAACCA 57.050 26.923 0.00 0.00 0.00 3.67
6351 6839 8.211838 CGAAAAACCGATAAAAGAATCAAAACC 58.788 33.333 0.00 0.00 0.00 3.27
6426 6914 6.088085 GCACAGATTGGTTTGTATCTTTTTCG 59.912 38.462 0.00 0.00 0.00 3.46
6433 6921 4.335594 GGTAGGCACAGATTGGTTTGTATC 59.664 45.833 0.00 0.00 0.00 2.24
6437 6925 1.468520 CGGTAGGCACAGATTGGTTTG 59.531 52.381 0.00 0.00 0.00 2.93
6447 6935 2.046411 CCATGCACGGTAGGCACA 60.046 61.111 0.00 0.00 45.23 4.57
6465 6953 7.274904 TCGTAGATTGCTTCAATAACACAGTAC 59.725 37.037 0.00 0.00 33.90 2.73
6466 6954 7.317390 TCGTAGATTGCTTCAATAACACAGTA 58.683 34.615 0.00 0.00 33.90 2.74
6467 6955 6.163476 TCGTAGATTGCTTCAATAACACAGT 58.837 36.000 0.00 0.00 33.90 3.55
6468 6956 6.647212 TCGTAGATTGCTTCAATAACACAG 57.353 37.500 0.00 0.00 33.90 3.66
6469 6957 7.428282 TTTCGTAGATTGCTTCAATAACACA 57.572 32.000 0.00 0.00 33.90 3.72
6470 6958 8.722342 TTTTTCGTAGATTGCTTCAATAACAC 57.278 30.769 0.00 0.00 33.90 3.32
6471 6959 8.779303 TCTTTTTCGTAGATTGCTTCAATAACA 58.221 29.630 0.00 0.00 33.90 2.41
6472 6960 9.774742 ATCTTTTTCGTAGATTGCTTCAATAAC 57.225 29.630 0.00 0.00 33.90 1.89
6475 6963 8.946085 TGTATCTTTTTCGTAGATTGCTTCAAT 58.054 29.630 0.00 0.00 36.72 2.57
6476 6964 8.317891 TGTATCTTTTTCGTAGATTGCTTCAA 57.682 30.769 0.00 0.00 35.04 2.69
6477 6965 7.899178 TGTATCTTTTTCGTAGATTGCTTCA 57.101 32.000 0.00 0.00 35.04 3.02
6478 6966 9.052080 GTTTGTATCTTTTTCGTAGATTGCTTC 57.948 33.333 0.00 0.00 35.04 3.86
6479 6967 8.021396 GGTTTGTATCTTTTTCGTAGATTGCTT 58.979 33.333 0.00 0.00 35.04 3.91
6480 6968 7.174253 TGGTTTGTATCTTTTTCGTAGATTGCT 59.826 33.333 0.00 0.00 35.04 3.91
6481 6969 7.302524 TGGTTTGTATCTTTTTCGTAGATTGC 58.697 34.615 0.00 0.00 35.04 3.56
6482 6970 9.672086 TTTGGTTTGTATCTTTTTCGTAGATTG 57.328 29.630 0.00 0.00 35.04 2.67
6483 6971 9.673454 GTTTGGTTTGTATCTTTTTCGTAGATT 57.327 29.630 0.00 0.00 35.04 2.40
6484 6972 8.294577 GGTTTGGTTTGTATCTTTTTCGTAGAT 58.705 33.333 0.00 0.00 35.04 1.98
6485 6973 7.282675 TGGTTTGGTTTGTATCTTTTTCGTAGA 59.717 33.333 0.00 0.00 0.00 2.59
6486 6974 7.419204 TGGTTTGGTTTGTATCTTTTTCGTAG 58.581 34.615 0.00 0.00 0.00 3.51
6487 6975 7.330900 TGGTTTGGTTTGTATCTTTTTCGTA 57.669 32.000 0.00 0.00 0.00 3.43
6488 6976 6.210287 TGGTTTGGTTTGTATCTTTTTCGT 57.790 33.333 0.00 0.00 0.00 3.85
6489 6977 7.651704 AGATTGGTTTGGTTTGTATCTTTTTCG 59.348 33.333 0.00 0.00 0.00 3.46
6490 6978 8.887036 AGATTGGTTTGGTTTGTATCTTTTTC 57.113 30.769 0.00 0.00 0.00 2.29
6491 6979 8.482128 TGAGATTGGTTTGGTTTGTATCTTTTT 58.518 29.630 0.00 0.00 0.00 1.94
6492 6980 8.017418 TGAGATTGGTTTGGTTTGTATCTTTT 57.983 30.769 0.00 0.00 0.00 2.27
6493 6981 7.595819 TGAGATTGGTTTGGTTTGTATCTTT 57.404 32.000 0.00 0.00 0.00 2.52
6494 6982 7.233348 ACATGAGATTGGTTTGGTTTGTATCTT 59.767 33.333 0.00 0.00 0.00 2.40
6495 6983 6.721208 ACATGAGATTGGTTTGGTTTGTATCT 59.279 34.615 0.00 0.00 0.00 1.98
6496 6984 6.924111 ACATGAGATTGGTTTGGTTTGTATC 58.076 36.000 0.00 0.00 0.00 2.24
6497 6985 6.721208 AGACATGAGATTGGTTTGGTTTGTAT 59.279 34.615 0.00 0.00 0.00 2.29
6498 6986 6.068010 AGACATGAGATTGGTTTGGTTTGTA 58.932 36.000 0.00 0.00 0.00 2.41
6499 6987 4.895297 AGACATGAGATTGGTTTGGTTTGT 59.105 37.500 0.00 0.00 0.00 2.83
6500 6988 5.009911 TGAGACATGAGATTGGTTTGGTTTG 59.990 40.000 0.00 0.00 0.00 2.93
6501 6989 5.139727 TGAGACATGAGATTGGTTTGGTTT 58.860 37.500 0.00 0.00 0.00 3.27
6502 6990 4.728772 TGAGACATGAGATTGGTTTGGTT 58.271 39.130 0.00 0.00 0.00 3.67
6503 6991 4.371624 TGAGACATGAGATTGGTTTGGT 57.628 40.909 0.00 0.00 0.00 3.67
6504 6992 5.393787 CCAATGAGACATGAGATTGGTTTGG 60.394 44.000 0.00 0.00 39.95 3.28
6505 6993 5.393787 CCCAATGAGACATGAGATTGGTTTG 60.394 44.000 19.19 8.34 42.24 2.93
6506 6994 4.708421 CCCAATGAGACATGAGATTGGTTT 59.292 41.667 19.19 0.00 42.24 3.27
6507 6995 4.264083 ACCCAATGAGACATGAGATTGGTT 60.264 41.667 19.19 9.70 42.24 3.67
6508 6996 3.267812 ACCCAATGAGACATGAGATTGGT 59.732 43.478 19.19 10.75 42.24 3.67
6509 6997 3.894759 ACCCAATGAGACATGAGATTGG 58.105 45.455 16.30 16.30 43.06 3.16
6510 6998 7.935755 AGTATTACCCAATGAGACATGAGATTG 59.064 37.037 0.00 2.06 0.00 2.67
6511 6999 8.038862 AGTATTACCCAATGAGACATGAGATT 57.961 34.615 0.00 0.00 0.00 2.40
6512 7000 7.256475 GGAGTATTACCCAATGAGACATGAGAT 60.256 40.741 0.00 0.00 0.00 2.75
6513 7001 6.042093 GGAGTATTACCCAATGAGACATGAGA 59.958 42.308 0.00 0.00 0.00 3.27
6514 7002 6.226787 GGAGTATTACCCAATGAGACATGAG 58.773 44.000 0.00 0.00 0.00 2.90
6515 7003 5.071788 GGGAGTATTACCCAATGAGACATGA 59.928 44.000 0.00 0.00 46.05 3.07
6516 7004 5.308825 GGGAGTATTACCCAATGAGACATG 58.691 45.833 0.00 0.00 46.05 3.21
6517 7005 5.568620 GGGAGTATTACCCAATGAGACAT 57.431 43.478 0.00 0.00 46.05 3.06
6528 7016 2.027385 ACGAACGGAGGGAGTATTACC 58.973 52.381 0.00 0.00 0.00 2.85
6529 7017 2.948315 AGACGAACGGAGGGAGTATTAC 59.052 50.000 0.00 0.00 0.00 1.89
6530 7018 3.287867 AGACGAACGGAGGGAGTATTA 57.712 47.619 0.00 0.00 0.00 0.98
6531 7019 2.140839 AGACGAACGGAGGGAGTATT 57.859 50.000 0.00 0.00 0.00 1.89
6532 7020 2.437281 TCTAGACGAACGGAGGGAGTAT 59.563 50.000 0.00 0.00 0.00 2.12
6533 7021 1.833630 TCTAGACGAACGGAGGGAGTA 59.166 52.381 0.00 0.00 0.00 2.59
6534 7022 0.617413 TCTAGACGAACGGAGGGAGT 59.383 55.000 0.00 0.00 0.00 3.85
6535 7023 1.970092 ATCTAGACGAACGGAGGGAG 58.030 55.000 0.00 0.00 0.00 4.30
6536 7024 2.171237 TGTATCTAGACGAACGGAGGGA 59.829 50.000 0.00 0.00 0.00 4.20
6537 7025 2.569059 TGTATCTAGACGAACGGAGGG 58.431 52.381 0.00 0.00 0.00 4.30
6538 7026 3.188873 GGATGTATCTAGACGAACGGAGG 59.811 52.174 0.00 0.00 0.00 4.30
6539 7027 3.813724 TGGATGTATCTAGACGAACGGAG 59.186 47.826 0.00 0.00 0.00 4.63
6540 7028 3.812262 TGGATGTATCTAGACGAACGGA 58.188 45.455 0.00 0.00 0.00 4.69
6541 7029 4.768130 ATGGATGTATCTAGACGAACGG 57.232 45.455 0.00 0.00 0.00 4.44
6542 7030 6.360947 CAGAAATGGATGTATCTAGACGAACG 59.639 42.308 0.00 0.00 0.00 3.95
6543 7031 7.168302 CACAGAAATGGATGTATCTAGACGAAC 59.832 40.741 0.00 0.00 0.00 3.95
6544 7032 7.068226 TCACAGAAATGGATGTATCTAGACGAA 59.932 37.037 0.00 0.00 0.00 3.85
6545 7033 6.546034 TCACAGAAATGGATGTATCTAGACGA 59.454 38.462 0.00 0.00 0.00 4.20
6546 7034 6.638873 GTCACAGAAATGGATGTATCTAGACG 59.361 42.308 0.00 0.00 0.00 4.18
6547 7035 7.492524 TGTCACAGAAATGGATGTATCTAGAC 58.507 38.462 0.00 0.00 31.82 2.59
6548 7036 7.660030 TGTCACAGAAATGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
6549 7037 7.984050 AGTTGTCACAGAAATGGATGTATCTAG 59.016 37.037 0.00 0.00 0.00 2.43
6550 7038 7.851228 AGTTGTCACAGAAATGGATGTATCTA 58.149 34.615 0.00 0.00 0.00 1.98
6551 7039 6.715280 AGTTGTCACAGAAATGGATGTATCT 58.285 36.000 0.00 0.00 0.00 1.98
6552 7040 6.992063 AGTTGTCACAGAAATGGATGTATC 57.008 37.500 0.00 0.00 0.00 2.24
6553 7041 8.103305 AGTTAGTTGTCACAGAAATGGATGTAT 58.897 33.333 0.00 0.00 0.00 2.29
6554 7042 7.450074 AGTTAGTTGTCACAGAAATGGATGTA 58.550 34.615 0.00 0.00 0.00 2.29
6555 7043 6.299141 AGTTAGTTGTCACAGAAATGGATGT 58.701 36.000 0.00 0.00 0.00 3.06
6556 7044 6.128172 GGAGTTAGTTGTCACAGAAATGGATG 60.128 42.308 0.00 0.00 0.00 3.51
6557 7045 5.940470 GGAGTTAGTTGTCACAGAAATGGAT 59.060 40.000 0.00 0.00 0.00 3.41
6558 7046 5.305585 GGAGTTAGTTGTCACAGAAATGGA 58.694 41.667 0.00 0.00 0.00 3.41
6559 7047 4.152402 CGGAGTTAGTTGTCACAGAAATGG 59.848 45.833 0.00 0.00 0.00 3.16
6560 7048 4.988540 TCGGAGTTAGTTGTCACAGAAATG 59.011 41.667 0.00 0.00 0.00 2.32
6561 7049 5.209818 TCGGAGTTAGTTGTCACAGAAAT 57.790 39.130 0.00 0.00 0.00 2.17
6562 7050 4.659111 TCGGAGTTAGTTGTCACAGAAA 57.341 40.909 0.00 0.00 0.00 2.52
6563 7051 4.365723 GTTCGGAGTTAGTTGTCACAGAA 58.634 43.478 0.00 0.00 0.00 3.02
6564 7052 3.549423 CGTTCGGAGTTAGTTGTCACAGA 60.549 47.826 0.00 0.00 0.00 3.41
6565 7053 2.724690 CGTTCGGAGTTAGTTGTCACAG 59.275 50.000 0.00 0.00 0.00 3.66
6566 7054 2.544277 CCGTTCGGAGTTAGTTGTCACA 60.544 50.000 5.19 0.00 0.00 3.58
6567 7055 2.056577 CCGTTCGGAGTTAGTTGTCAC 58.943 52.381 5.19 0.00 0.00 3.67
6568 7056 1.955778 TCCGTTCGGAGTTAGTTGTCA 59.044 47.619 10.00 0.00 0.00 3.58
6569 7057 2.593257 CTCCGTTCGGAGTTAGTTGTC 58.407 52.381 26.86 0.00 44.93 3.18
6570 7058 2.719426 CTCCGTTCGGAGTTAGTTGT 57.281 50.000 26.86 0.00 44.93 3.32
6579 7067 2.092212 ACTATTACTCCCTCCGTTCGGA 60.092 50.000 13.34 13.34 0.00 4.55
6580 7068 2.305009 ACTATTACTCCCTCCGTTCGG 58.695 52.381 4.74 4.74 0.00 4.30
6581 7069 4.110482 CAAACTATTACTCCCTCCGTTCG 58.890 47.826 0.00 0.00 0.00 3.95
6582 7070 5.334724 TCAAACTATTACTCCCTCCGTTC 57.665 43.478 0.00 0.00 0.00 3.95
6583 7071 5.661759 AGATCAAACTATTACTCCCTCCGTT 59.338 40.000 0.00 0.00 0.00 4.44
6584 7072 5.209659 AGATCAAACTATTACTCCCTCCGT 58.790 41.667 0.00 0.00 0.00 4.69
6585 7073 5.793030 AGATCAAACTATTACTCCCTCCG 57.207 43.478 0.00 0.00 0.00 4.63
6617 7105 5.375417 TTCTTGCTTCAATACACATGTGG 57.625 39.130 28.64 11.78 34.19 4.17
6620 7108 8.853345 GTTGTAATTCTTGCTTCAATACACATG 58.147 33.333 0.00 0.00 0.00 3.21
6623 7111 8.690840 GTTGTTGTAATTCTTGCTTCAATACAC 58.309 33.333 0.00 0.00 0.00 2.90
6631 7119 8.389603 CAAATGTTGTTGTTGTAATTCTTGCTT 58.610 29.630 0.00 0.00 0.00 3.91
6685 7176 0.948623 CCATATGAATTCGGCGGCGA 60.949 55.000 31.46 31.46 0.00 5.54
6744 7235 2.094752 AGCAAGCCGAAACGCAAAATAT 60.095 40.909 0.00 0.00 0.00 1.28
6762 7253 2.282391 AGCATTCGGGCAACAGCA 60.282 55.556 0.00 0.00 39.74 4.41
6763 7254 2.180017 CAGCATTCGGGCAACAGC 59.820 61.111 0.00 0.00 39.74 4.40
6769 7260 2.747460 TCAGCACAGCATTCGGGC 60.747 61.111 0.00 0.00 0.00 6.13
6780 7271 1.063174 GCAGGAAATCATCGTCAGCAC 59.937 52.381 0.00 0.00 0.00 4.40
6783 7274 2.799412 GCTAGCAGGAAATCATCGTCAG 59.201 50.000 10.63 0.00 0.00 3.51
6787 7278 2.141517 CCAGCTAGCAGGAAATCATCG 58.858 52.381 21.03 0.00 0.00 3.84
6800 7291 6.586344 TCTCCAATTGTAAATCTCCAGCTAG 58.414 40.000 4.43 0.00 0.00 3.42
6807 7298 8.830580 TGATCGAATTCTCCAATTGTAAATCTC 58.169 33.333 4.43 0.00 31.94 2.75
6850 7341 3.555139 CGGCTGAAGAAAGCAGAGAATAG 59.445 47.826 0.00 0.00 45.43 1.73
6902 7393 2.435410 TGTGCTCATGCTCAGCCG 60.435 61.111 0.00 0.00 37.71 5.52
6904 7395 1.500844 GTGTGTGCTCATGCTCAGC 59.499 57.895 0.00 0.00 42.33 4.26
6919 7410 1.227556 AAGAGTCCTTTGCGCGTGT 60.228 52.632 8.43 0.00 0.00 4.49
6923 7414 0.179179 GCATCAAGAGTCCTTTGCGC 60.179 55.000 0.00 0.00 29.67 6.09
6927 7418 0.036732 TGCCGCATCAAGAGTCCTTT 59.963 50.000 0.00 0.00 0.00 3.11
6974 7465 5.613329 ACTCAACCAAAACCATACTTACGA 58.387 37.500 0.00 0.00 0.00 3.43
7020 7511 7.281841 TGCATATCTAGTCCATTGAATTGACA 58.718 34.615 11.34 0.00 0.00 3.58
7021 7512 7.094890 CCTGCATATCTAGTCCATTGAATTGAC 60.095 40.741 1.46 1.46 0.00 3.18
7023 7514 6.713903 ACCTGCATATCTAGTCCATTGAATTG 59.286 38.462 0.00 0.00 0.00 2.32
7024 7515 6.845908 ACCTGCATATCTAGTCCATTGAATT 58.154 36.000 0.00 0.00 0.00 2.17
7117 7608 8.386264 AGGAATGATATAGGGGTTGACATAAAG 58.614 37.037 0.00 0.00 0.00 1.85
7118 7609 8.287904 AGGAATGATATAGGGGTTGACATAAA 57.712 34.615 0.00 0.00 0.00 1.40
7137 7628 7.125792 ACTACACCACTAGGATTTAGGAATG 57.874 40.000 0.00 0.00 38.69 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.