Multiple sequence alignment - TraesCS7A01G226200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G226200 chr7A 100.000 2733 0 0 1 2733 195549195 195551927 0.000000e+00 5048.0
1 TraesCS7A01G226200 chr7A 84.722 360 36 5 752 1106 195733701 195734046 2.610000e-90 342.0
2 TraesCS7A01G226200 chr7A 82.026 306 52 3 226 530 593072836 593072533 9.710000e-65 257.0
3 TraesCS7A01G226200 chr7A 80.259 309 40 11 1360 1653 195568377 195568679 2.130000e-51 213.0
4 TraesCS7A01G226200 chr7A 91.011 89 2 5 68 153 290616484 290616399 6.180000e-22 115.0
5 TraesCS7A01G226200 chr7B 91.105 1158 90 9 1580 2732 332255270 332254121 0.000000e+00 1555.0
6 TraesCS7A01G226200 chr7B 93.143 525 27 3 654 1170 332256385 332255862 0.000000e+00 761.0
7 TraesCS7A01G226200 chr7B 93.852 244 12 1 1188 1431 332255773 332255533 5.560000e-97 364.0
8 TraesCS7A01G226200 chr7B 81.195 452 53 11 667 1113 332243326 332242902 4.360000e-88 335.0
9 TraesCS7A01G226200 chr7B 92.105 228 18 0 1444 1671 332255442 332255215 3.390000e-84 322.0
10 TraesCS7A01G226200 chr7B 82.228 377 47 6 752 1123 332172971 332172610 9.510000e-80 307.0
11 TraesCS7A01G226200 chr7B 95.000 120 6 0 533 652 332256554 332256435 3.590000e-44 189.0
12 TraesCS7A01G226200 chr7B 80.488 82 13 3 1394 1472 328802732 328802651 2.940000e-05 60.2
13 TraesCS7A01G226200 chr7D 92.336 1083 72 7 1444 2519 188360541 188359463 0.000000e+00 1530.0
14 TraesCS7A01G226200 chr7D 93.492 630 30 5 533 1158 188361860 188361238 0.000000e+00 926.0
15 TraesCS7A01G226200 chr7D 93.243 222 12 1 1210 1431 188360850 188360632 9.440000e-85 324.0
16 TraesCS7A01G226200 chr7D 91.827 208 13 4 2525 2731 188359421 188359217 1.240000e-73 287.0
17 TraesCS7A01G226200 chr7D 87.383 214 27 0 900 1113 188319255 188319042 2.100000e-61 246.0
18 TraesCS7A01G226200 chr7D 75.000 176 29 10 1394 1563 185927281 185927115 1.760000e-07 67.6
19 TraesCS7A01G226200 chr5A 82.295 305 50 4 230 531 559787339 559787642 7.510000e-66 261.0
20 TraesCS7A01G226200 chr5A 81.646 316 53 5 229 540 299295103 299294789 9.710000e-65 257.0
21 TraesCS7A01G226200 chr5A 81.877 309 52 4 226 531 538101167 538101474 9.710000e-65 257.0
22 TraesCS7A01G226200 chr2A 81.967 305 53 2 229 531 409644292 409643988 9.710000e-65 257.0
23 TraesCS7A01G226200 chr2A 81.613 310 54 3 225 531 628728249 628727940 1.260000e-63 254.0
24 TraesCS7A01G226200 chr2A 81.579 304 54 2 230 531 743375496 743375193 1.620000e-62 250.0
25 TraesCS7A01G226200 chr4A 81.877 309 49 6 228 531 631371719 631371413 1.260000e-63 254.0
26 TraesCS7A01G226200 chr1D 81.579 304 54 2 230 531 14667362 14667665 1.620000e-62 250.0
27 TraesCS7A01G226200 chr5D 91.011 89 4 3 66 153 450210990 450211075 1.720000e-22 117.0
28 TraesCS7A01G226200 chr5D 92.683 82 1 3 74 153 356899629 356899551 2.220000e-21 113.0
29 TraesCS7A01G226200 chr5D 92.593 81 2 3 73 153 556641896 556641820 2.220000e-21 113.0
30 TraesCS7A01G226200 chr3D 94.805 77 1 2 78 154 584272045 584272118 1.720000e-22 117.0
31 TraesCS7A01G226200 chr3D 91.566 83 3 3 72 153 172597461 172597540 8.000000e-21 111.0
32 TraesCS7A01G226200 chr1B 94.737 76 3 1 68 143 516890994 516891068 1.720000e-22 117.0
33 TraesCS7A01G226200 chr1B 94.737 76 3 1 68 143 516916536 516916610 1.720000e-22 117.0
34 TraesCS7A01G226200 chr1B 91.011 89 2 5 67 153 16522412 16522496 6.180000e-22 115.0
35 TraesCS7A01G226200 chr6B 100.000 38 0 0 2455 2492 394536673 394536636 1.360000e-08 71.3
36 TraesCS7A01G226200 chr6A 91.837 49 2 1 2444 2492 84416699 84416745 1.760000e-07 67.6
37 TraesCS7A01G226200 chr3B 91.837 49 2 1 2444 2492 92210738 92210692 1.760000e-07 67.6
38 TraesCS7A01G226200 chrUn 93.333 45 1 1 2448 2492 423256983 423257025 6.320000e-07 65.8
39 TraesCS7A01G226200 chrUn 97.368 38 1 0 2455 2492 441344333 441344296 6.320000e-07 65.8
40 TraesCS7A01G226200 chr6D 93.333 45 1 1 2448 2492 277318602 277318644 6.320000e-07 65.8
41 TraesCS7A01G226200 chr4D 93.333 45 1 1 2448 2492 123308816 123308858 6.320000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G226200 chr7A 195549195 195551927 2732 False 5048.00 5048 100.0000 1 2733 1 chr7A.!!$F1 2732
1 TraesCS7A01G226200 chr7B 332254121 332256554 2433 True 638.20 1555 93.0410 533 2732 5 chr7B.!!$R4 2199
2 TraesCS7A01G226200 chr7D 188359217 188361860 2643 True 766.75 1530 92.7245 533 2731 4 chr7D.!!$R3 2198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.039617 TGTGCCATTTTAGTGCGTGC 60.040 50.0 0.00 0.0 0.00 5.34 F
358 359 0.108186 ATGCGCATTCAGTCGGAGAA 60.108 50.0 19.28 0.0 39.69 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 2010 0.469917 CTGGATGACCATAACCGCCT 59.530 55.0 0.0 0.0 45.87 5.52 R
2229 2755 0.106918 AAGTGTGGTGCTCGGGAAAA 60.107 50.0 0.0 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.986477 ATGTTGTGACTTATAAATTTTGCTCC 57.014 30.769 0.00 0.00 0.00 4.70
31 32 7.946207 TGTTGTGACTTATAAATTTTGCTCCA 58.054 30.769 0.00 0.00 0.00 3.86
32 33 7.865385 TGTTGTGACTTATAAATTTTGCTCCAC 59.135 33.333 0.00 0.00 0.00 4.02
33 34 7.517614 TGTGACTTATAAATTTTGCTCCACA 57.482 32.000 0.00 2.39 0.00 4.17
34 35 7.946207 TGTGACTTATAAATTTTGCTCCACAA 58.054 30.769 0.00 0.00 36.13 3.33
35 36 7.865385 TGTGACTTATAAATTTTGCTCCACAAC 59.135 33.333 0.00 0.00 38.23 3.32
36 37 7.865385 GTGACTTATAAATTTTGCTCCACAACA 59.135 33.333 0.00 0.00 38.23 3.33
37 38 7.865385 TGACTTATAAATTTTGCTCCACAACAC 59.135 33.333 0.00 0.00 38.23 3.32
38 39 7.951591 ACTTATAAATTTTGCTCCACAACACT 58.048 30.769 0.00 0.00 38.23 3.55
39 40 7.867403 ACTTATAAATTTTGCTCCACAACACTG 59.133 33.333 0.00 0.00 38.23 3.66
40 41 3.457610 AATTTTGCTCCACAACACTGG 57.542 42.857 0.00 0.00 38.23 4.00
41 42 1.846007 TTTTGCTCCACAACACTGGT 58.154 45.000 0.00 0.00 38.23 4.00
42 43 1.388547 TTTGCTCCACAACACTGGTC 58.611 50.000 0.00 0.00 38.23 4.02
43 44 0.546122 TTGCTCCACAACACTGGTCT 59.454 50.000 0.00 0.00 31.73 3.85
44 45 0.546122 TGCTCCACAACACTGGTCTT 59.454 50.000 0.00 0.00 32.50 3.01
45 46 1.230324 GCTCCACAACACTGGTCTTC 58.770 55.000 0.00 0.00 32.50 2.87
46 47 1.475034 GCTCCACAACACTGGTCTTCA 60.475 52.381 0.00 0.00 32.50 3.02
47 48 2.917933 CTCCACAACACTGGTCTTCAA 58.082 47.619 0.00 0.00 32.50 2.69
48 49 2.614057 CTCCACAACACTGGTCTTCAAC 59.386 50.000 0.00 0.00 32.50 3.18
49 50 2.026729 TCCACAACACTGGTCTTCAACA 60.027 45.455 0.00 0.00 32.50 3.33
50 51 2.752354 CCACAACACTGGTCTTCAACAA 59.248 45.455 0.00 0.00 0.00 2.83
51 52 3.427503 CCACAACACTGGTCTTCAACAAC 60.428 47.826 0.00 0.00 0.00 3.32
52 53 2.752903 ACAACACTGGTCTTCAACAACC 59.247 45.455 0.00 0.00 36.03 3.77
53 54 1.663695 ACACTGGTCTTCAACAACCG 58.336 50.000 0.00 0.00 38.45 4.44
54 55 1.065709 ACACTGGTCTTCAACAACCGT 60.066 47.619 0.00 0.00 38.45 4.83
55 56 2.014128 CACTGGTCTTCAACAACCGTT 58.986 47.619 0.00 0.00 38.45 4.44
62 63 2.101185 CAACAACCGTTGTGCGCA 59.899 55.556 17.51 5.66 46.20 6.09
63 64 2.101380 AACAACCGTTGTGCGCAC 59.899 55.556 33.11 33.11 44.59 5.34
64 65 3.726631 AACAACCGTTGTGCGCACG 62.727 57.895 33.22 22.50 44.59 5.34
65 66 4.230863 CAACCGTTGTGCGCACGT 62.231 61.111 33.22 22.61 39.71 4.49
66 67 4.230863 AACCGTTGTGCGCACGTG 62.231 61.111 33.22 24.32 39.71 4.49
68 69 4.936248 CCGTTGTGCGCACGTGTG 62.936 66.667 33.22 24.45 39.71 3.82
69 70 4.217111 CGTTGTGCGCACGTGTGT 62.217 61.111 33.22 0.00 0.00 3.72
81 82 3.433709 CACGTGTGTGCATGTAAGTAC 57.566 47.619 7.58 0.00 42.48 2.73
82 83 3.057019 CACGTGTGTGCATGTAAGTACT 58.943 45.455 7.58 0.00 42.48 2.73
83 84 3.121279 CACGTGTGTGCATGTAAGTACTC 59.879 47.826 7.58 0.00 42.48 2.59
84 85 3.005472 ACGTGTGTGCATGTAAGTACTCT 59.995 43.478 0.00 0.00 42.54 3.24
85 86 3.608506 CGTGTGTGCATGTAAGTACTCTC 59.391 47.826 0.00 0.00 0.00 3.20
86 87 4.616143 CGTGTGTGCATGTAAGTACTCTCT 60.616 45.833 0.00 0.00 0.00 3.10
87 88 4.859798 GTGTGTGCATGTAAGTACTCTCTC 59.140 45.833 0.00 0.00 0.00 3.20
88 89 4.082190 TGTGTGCATGTAAGTACTCTCTCC 60.082 45.833 0.00 0.00 0.00 3.71
89 90 3.128764 TGTGCATGTAAGTACTCTCTCCG 59.871 47.826 0.00 0.00 0.00 4.63
90 91 3.128938 GTGCATGTAAGTACTCTCTCCGT 59.871 47.826 0.00 0.00 0.00 4.69
91 92 3.762288 TGCATGTAAGTACTCTCTCCGTT 59.238 43.478 0.00 0.00 0.00 4.44
92 93 4.142447 TGCATGTAAGTACTCTCTCCGTTC 60.142 45.833 0.00 0.00 0.00 3.95
93 94 4.734108 GCATGTAAGTACTCTCTCCGTTCC 60.734 50.000 0.00 0.00 0.00 3.62
94 95 4.025040 TGTAAGTACTCTCTCCGTTCCA 57.975 45.455 0.00 0.00 0.00 3.53
95 96 4.401022 TGTAAGTACTCTCTCCGTTCCAA 58.599 43.478 0.00 0.00 0.00 3.53
96 97 4.828939 TGTAAGTACTCTCTCCGTTCCAAA 59.171 41.667 0.00 0.00 0.00 3.28
97 98 5.479375 TGTAAGTACTCTCTCCGTTCCAAAT 59.521 40.000 0.00 0.00 0.00 2.32
98 99 5.485209 AAGTACTCTCTCCGTTCCAAATT 57.515 39.130 0.00 0.00 0.00 1.82
99 100 6.600882 AAGTACTCTCTCCGTTCCAAATTA 57.399 37.500 0.00 0.00 0.00 1.40
100 101 5.963594 AGTACTCTCTCCGTTCCAAATTAC 58.036 41.667 0.00 0.00 0.00 1.89
101 102 5.715753 AGTACTCTCTCCGTTCCAAATTACT 59.284 40.000 0.00 0.00 0.00 2.24
102 103 5.074584 ACTCTCTCCGTTCCAAATTACTC 57.925 43.478 0.00 0.00 0.00 2.59
103 104 4.106029 TCTCTCCGTTCCAAATTACTCG 57.894 45.455 0.00 0.00 0.00 4.18
104 105 3.508793 TCTCTCCGTTCCAAATTACTCGT 59.491 43.478 0.00 0.00 0.00 4.18
105 106 3.841643 TCTCCGTTCCAAATTACTCGTC 58.158 45.455 0.00 0.00 0.00 4.20
106 107 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
107 108 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
108 109 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
109 110 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
110 111 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
111 112 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
112 113 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
113 114 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
114 115 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
115 116 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
116 117 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
117 118 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
118 119 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
119 120 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
120 121 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
121 122 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
122 123 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
123 124 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
124 125 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
125 126 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
126 127 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
127 128 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
140 141 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
141 142 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
142 143 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
143 144 4.519191 TTTGAACTAAAACCACGACGAC 57.481 40.909 0.00 0.00 0.00 4.34
144 145 2.118683 TGAACTAAAACCACGACGACG 58.881 47.619 5.58 5.58 45.75 5.12
145 146 2.223456 TGAACTAAAACCACGACGACGA 60.223 45.455 15.32 0.00 42.66 4.20
146 147 2.042104 ACTAAAACCACGACGACGAG 57.958 50.000 15.32 5.96 42.66 4.18
147 148 1.334869 ACTAAAACCACGACGACGAGT 59.665 47.619 15.32 8.05 42.66 4.18
148 149 2.548057 ACTAAAACCACGACGACGAGTA 59.452 45.455 15.32 0.00 42.66 2.59
149 150 2.490328 AAAACCACGACGACGAGTAA 57.510 45.000 15.32 0.00 42.66 2.24
150 151 2.712057 AAACCACGACGACGAGTAAT 57.288 45.000 15.32 1.66 42.66 1.89
151 152 2.712057 AACCACGACGACGAGTAATT 57.288 45.000 15.32 0.00 42.66 1.40
152 153 2.712057 ACCACGACGACGAGTAATTT 57.288 45.000 15.32 0.00 42.66 1.82
153 154 3.017265 ACCACGACGACGAGTAATTTT 57.983 42.857 15.32 0.00 42.66 1.82
154 155 4.159377 ACCACGACGACGAGTAATTTTA 57.841 40.909 15.32 0.00 42.66 1.52
155 156 4.737054 ACCACGACGACGAGTAATTTTAT 58.263 39.130 15.32 0.00 42.66 1.40
156 157 4.560035 ACCACGACGACGAGTAATTTTATG 59.440 41.667 15.32 0.00 42.66 1.90
157 158 4.560035 CCACGACGACGAGTAATTTTATGT 59.440 41.667 15.32 0.00 42.66 2.29
158 159 5.061311 CCACGACGACGAGTAATTTTATGTT 59.939 40.000 15.32 0.00 42.66 2.71
159 160 5.944135 CACGACGACGAGTAATTTTATGTTG 59.056 40.000 15.32 0.00 42.66 3.33
160 161 5.858049 ACGACGACGAGTAATTTTATGTTGA 59.142 36.000 15.32 0.00 42.66 3.18
161 162 6.363088 ACGACGACGAGTAATTTTATGTTGAA 59.637 34.615 15.32 0.00 42.66 2.69
162 163 6.887763 CGACGACGAGTAATTTTATGTTGAAG 59.112 38.462 0.00 0.00 42.66 3.02
163 164 7.410087 CGACGACGAGTAATTTTATGTTGAAGT 60.410 37.037 0.00 0.00 42.66 3.01
164 165 8.746922 ACGACGAGTAATTTTATGTTGAAGTA 57.253 30.769 0.00 0.00 0.00 2.24
165 166 9.362539 ACGACGAGTAATTTTATGTTGAAGTAT 57.637 29.630 0.00 0.00 0.00 2.12
180 181 8.862325 TGTTGAAGTATATTCACACCAAATCT 57.138 30.769 0.00 0.00 0.00 2.40
181 182 9.952030 TGTTGAAGTATATTCACACCAAATCTA 57.048 29.630 0.00 0.00 0.00 1.98
186 187 9.905713 AAGTATATTCACACCAAATCTATGTGT 57.094 29.630 3.74 0.00 43.42 3.72
190 191 3.153369 ACACCAAATCTATGTGTGCCA 57.847 42.857 0.00 0.00 41.40 4.92
191 192 3.700538 ACACCAAATCTATGTGTGCCAT 58.299 40.909 0.00 0.00 41.40 4.40
192 193 4.088634 ACACCAAATCTATGTGTGCCATT 58.911 39.130 0.00 0.00 41.40 3.16
193 194 4.527816 ACACCAAATCTATGTGTGCCATTT 59.472 37.500 0.00 0.00 41.40 2.32
194 195 5.011943 ACACCAAATCTATGTGTGCCATTTT 59.988 36.000 0.00 0.00 41.40 1.82
195 196 6.210385 ACACCAAATCTATGTGTGCCATTTTA 59.790 34.615 0.00 0.00 41.40 1.52
196 197 6.753279 CACCAAATCTATGTGTGCCATTTTAG 59.247 38.462 0.00 0.00 34.86 1.85
197 198 6.437162 ACCAAATCTATGTGTGCCATTTTAGT 59.563 34.615 0.00 0.00 34.86 2.24
198 199 6.753279 CCAAATCTATGTGTGCCATTTTAGTG 59.247 38.462 0.00 0.00 34.86 2.74
199 200 4.963276 TCTATGTGTGCCATTTTAGTGC 57.037 40.909 0.00 0.00 34.86 4.40
200 201 2.634982 ATGTGTGCCATTTTAGTGCG 57.365 45.000 0.00 0.00 0.00 5.34
201 202 1.313772 TGTGTGCCATTTTAGTGCGT 58.686 45.000 0.00 0.00 0.00 5.24
202 203 1.001924 TGTGTGCCATTTTAGTGCGTG 60.002 47.619 0.00 0.00 0.00 5.34
203 204 0.039617 TGTGCCATTTTAGTGCGTGC 60.040 50.000 0.00 0.00 0.00 5.34
204 205 1.065031 GTGCCATTTTAGTGCGTGCG 61.065 55.000 0.00 0.00 0.00 5.34
205 206 1.209127 GCCATTTTAGTGCGTGCGT 59.791 52.632 0.00 0.00 0.00 5.24
206 207 1.065031 GCCATTTTAGTGCGTGCGTG 61.065 55.000 0.00 0.00 0.00 5.34
207 208 0.237235 CCATTTTAGTGCGTGCGTGT 59.763 50.000 0.00 0.00 0.00 4.49
208 209 1.317332 CATTTTAGTGCGTGCGTGTG 58.683 50.000 0.00 0.00 0.00 3.82
209 210 0.941542 ATTTTAGTGCGTGCGTGTGT 59.058 45.000 0.00 0.00 0.00 3.72
210 211 1.568606 TTTTAGTGCGTGCGTGTGTA 58.431 45.000 0.00 0.00 0.00 2.90
211 212 1.568606 TTTAGTGCGTGCGTGTGTAA 58.431 45.000 0.00 0.00 0.00 2.41
212 213 1.133407 TTAGTGCGTGCGTGTGTAAG 58.867 50.000 0.00 0.00 0.00 2.34
213 214 1.279527 TAGTGCGTGCGTGTGTAAGC 61.280 55.000 0.00 0.00 35.88 3.09
214 215 2.586357 TGCGTGCGTGTGTAAGCA 60.586 55.556 0.00 0.00 42.15 3.91
215 216 2.170985 GCGTGCGTGTGTAAGCAG 59.829 61.111 0.00 0.00 41.89 4.24
216 217 2.307309 GCGTGCGTGTGTAAGCAGA 61.307 57.895 0.00 0.00 41.89 4.26
217 218 1.626654 GCGTGCGTGTGTAAGCAGAT 61.627 55.000 0.00 0.00 41.89 2.90
218 219 1.624487 CGTGCGTGTGTAAGCAGATA 58.376 50.000 0.00 0.00 41.89 1.98
219 220 2.193447 CGTGCGTGTGTAAGCAGATAT 58.807 47.619 0.00 0.00 41.89 1.63
220 221 2.603110 CGTGCGTGTGTAAGCAGATATT 59.397 45.455 0.00 0.00 41.89 1.28
221 222 3.062099 CGTGCGTGTGTAAGCAGATATTT 59.938 43.478 0.00 0.00 41.89 1.40
222 223 4.435518 CGTGCGTGTGTAAGCAGATATTTT 60.436 41.667 0.00 0.00 41.89 1.82
223 224 5.220322 CGTGCGTGTGTAAGCAGATATTTTA 60.220 40.000 0.00 0.00 41.89 1.52
224 225 6.509517 CGTGCGTGTGTAAGCAGATATTTTAT 60.510 38.462 0.00 0.00 41.89 1.40
225 226 7.306341 CGTGCGTGTGTAAGCAGATATTTTATA 60.306 37.037 0.00 0.00 41.89 0.98
226 227 8.495949 GTGCGTGTGTAAGCAGATATTTTATAT 58.504 33.333 0.00 0.00 41.89 0.86
227 228 8.495148 TGCGTGTGTAAGCAGATATTTTATATG 58.505 33.333 0.00 0.00 36.37 1.78
228 229 8.495949 GCGTGTGTAAGCAGATATTTTATATGT 58.504 33.333 0.00 0.00 0.00 2.29
229 230 9.797473 CGTGTGTAAGCAGATATTTTATATGTG 57.203 33.333 0.00 0.00 0.00 3.21
230 231 9.599322 GTGTGTAAGCAGATATTTTATATGTGC 57.401 33.333 16.60 16.60 42.40 4.57
231 232 8.495148 TGTGTAAGCAGATATTTTATATGTGCG 58.505 33.333 17.66 0.00 45.37 5.34
232 233 8.708742 GTGTAAGCAGATATTTTATATGTGCGA 58.291 33.333 17.66 10.66 45.37 5.10
233 234 9.267084 TGTAAGCAGATATTTTATATGTGCGAA 57.733 29.630 17.66 10.53 45.37 4.70
234 235 9.530129 GTAAGCAGATATTTTATATGTGCGAAC 57.470 33.333 17.66 15.91 45.37 3.95
235 236 7.133891 AGCAGATATTTTATATGTGCGAACC 57.866 36.000 17.66 0.00 45.37 3.62
236 237 6.710295 AGCAGATATTTTATATGTGCGAACCA 59.290 34.615 17.66 0.00 45.37 3.67
237 238 7.228507 AGCAGATATTTTATATGTGCGAACCAA 59.771 33.333 17.66 0.00 45.37 3.67
238 239 7.323656 GCAGATATTTTATATGTGCGAACCAAC 59.676 37.037 11.47 0.00 35.13 3.77
239 240 7.803189 CAGATATTTTATATGTGCGAACCAACC 59.197 37.037 0.00 0.00 0.00 3.77
240 241 7.719633 AGATATTTTATATGTGCGAACCAACCT 59.280 33.333 0.00 0.00 0.00 3.50
241 242 8.911918 ATATTTTATATGTGCGAACCAACCTA 57.088 30.769 0.00 0.00 0.00 3.08
242 243 7.817418 ATTTTATATGTGCGAACCAACCTAT 57.183 32.000 0.00 0.00 0.00 2.57
243 244 6.612247 TTTATATGTGCGAACCAACCTATG 57.388 37.500 0.00 0.00 0.00 2.23
244 245 2.779755 ATGTGCGAACCAACCTATGA 57.220 45.000 0.00 0.00 0.00 2.15
245 246 2.779755 TGTGCGAACCAACCTATGAT 57.220 45.000 0.00 0.00 0.00 2.45
246 247 3.066291 TGTGCGAACCAACCTATGATT 57.934 42.857 0.00 0.00 0.00 2.57
247 248 4.209307 TGTGCGAACCAACCTATGATTA 57.791 40.909 0.00 0.00 0.00 1.75
248 249 4.188462 TGTGCGAACCAACCTATGATTAG 58.812 43.478 0.00 0.00 0.00 1.73
249 250 4.081365 TGTGCGAACCAACCTATGATTAGA 60.081 41.667 0.00 0.00 0.00 2.10
250 251 5.057149 GTGCGAACCAACCTATGATTAGAT 58.943 41.667 0.00 0.00 0.00 1.98
251 252 5.050091 GTGCGAACCAACCTATGATTAGATG 60.050 44.000 0.00 0.00 0.00 2.90
252 253 4.452455 GCGAACCAACCTATGATTAGATGG 59.548 45.833 0.00 0.00 37.82 3.51
253 254 5.611374 CGAACCAACCTATGATTAGATGGT 58.389 41.667 0.00 0.00 42.46 3.55
254 255 6.055588 CGAACCAACCTATGATTAGATGGTT 58.944 40.000 16.35 16.35 46.67 3.67
260 261 6.131972 ACCTATGATTAGATGGTTGGATGG 57.868 41.667 0.00 0.00 0.00 3.51
261 262 5.851693 ACCTATGATTAGATGGTTGGATGGA 59.148 40.000 0.00 0.00 0.00 3.41
262 263 6.176183 CCTATGATTAGATGGTTGGATGGAC 58.824 44.000 0.00 0.00 0.00 4.02
263 264 5.651612 ATGATTAGATGGTTGGATGGACA 57.348 39.130 0.00 0.00 0.00 4.02
264 265 5.449297 TGATTAGATGGTTGGATGGACAA 57.551 39.130 0.00 0.00 0.00 3.18
274 275 3.644966 TGGATGGACAACAGTATTCCC 57.355 47.619 0.00 0.00 0.00 3.97
275 276 2.916269 TGGATGGACAACAGTATTCCCA 59.084 45.455 0.00 0.00 0.00 4.37
276 277 3.054434 TGGATGGACAACAGTATTCCCAG 60.054 47.826 0.00 0.00 0.00 4.45
277 278 2.489938 TGGACAACAGTATTCCCAGC 57.510 50.000 0.00 0.00 0.00 4.85
278 279 1.004277 TGGACAACAGTATTCCCAGCC 59.996 52.381 0.00 0.00 0.00 4.85
279 280 1.682087 GGACAACAGTATTCCCAGCCC 60.682 57.143 0.00 0.00 0.00 5.19
280 281 1.004277 GACAACAGTATTCCCAGCCCA 59.996 52.381 0.00 0.00 0.00 5.36
281 282 1.640670 ACAACAGTATTCCCAGCCCAT 59.359 47.619 0.00 0.00 0.00 4.00
282 283 2.301346 CAACAGTATTCCCAGCCCATC 58.699 52.381 0.00 0.00 0.00 3.51
283 284 1.595311 ACAGTATTCCCAGCCCATCA 58.405 50.000 0.00 0.00 0.00 3.07
284 285 1.492176 ACAGTATTCCCAGCCCATCAG 59.508 52.381 0.00 0.00 0.00 2.90
285 286 1.143813 AGTATTCCCAGCCCATCAGG 58.856 55.000 0.00 0.00 39.47 3.86
286 287 1.140312 GTATTCCCAGCCCATCAGGA 58.860 55.000 0.00 0.00 38.24 3.86
287 288 1.707427 GTATTCCCAGCCCATCAGGAT 59.293 52.381 0.00 0.00 38.24 3.24
288 289 1.238615 ATTCCCAGCCCATCAGGATT 58.761 50.000 0.00 0.00 38.24 3.01
289 290 0.552848 TTCCCAGCCCATCAGGATTC 59.447 55.000 0.00 0.00 38.24 2.52
290 291 0.624206 TCCCAGCCCATCAGGATTCA 60.624 55.000 0.00 0.00 38.24 2.57
291 292 0.259647 CCCAGCCCATCAGGATTCAA 59.740 55.000 0.00 0.00 38.24 2.69
292 293 1.688772 CCAGCCCATCAGGATTCAAG 58.311 55.000 0.00 0.00 38.24 3.02
293 294 1.064166 CCAGCCCATCAGGATTCAAGT 60.064 52.381 0.00 0.00 38.24 3.16
294 295 2.295885 CAGCCCATCAGGATTCAAGTC 58.704 52.381 0.00 0.00 38.24 3.01
295 296 1.213926 AGCCCATCAGGATTCAAGTCC 59.786 52.381 0.00 0.00 38.24 3.85
303 304 3.425162 AGGATTCAAGTCCTGGTGTTC 57.575 47.619 0.00 0.00 46.76 3.18
304 305 2.076863 GGATTCAAGTCCTGGTGTTCG 58.923 52.381 0.00 0.00 35.32 3.95
305 306 1.464997 GATTCAAGTCCTGGTGTTCGC 59.535 52.381 0.00 0.00 0.00 4.70
306 307 0.179234 TTCAAGTCCTGGTGTTCGCA 59.821 50.000 0.00 0.00 0.00 5.10
307 308 0.396435 TCAAGTCCTGGTGTTCGCAT 59.604 50.000 0.00 0.00 0.00 4.73
308 309 1.202758 TCAAGTCCTGGTGTTCGCATT 60.203 47.619 0.00 0.00 0.00 3.56
309 310 1.608590 CAAGTCCTGGTGTTCGCATTT 59.391 47.619 0.00 0.00 0.00 2.32
310 311 2.811431 CAAGTCCTGGTGTTCGCATTTA 59.189 45.455 0.00 0.00 0.00 1.40
311 312 3.350219 AGTCCTGGTGTTCGCATTTAT 57.650 42.857 0.00 0.00 0.00 1.40
312 313 3.686016 AGTCCTGGTGTTCGCATTTATT 58.314 40.909 0.00 0.00 0.00 1.40
313 314 3.689649 AGTCCTGGTGTTCGCATTTATTC 59.310 43.478 0.00 0.00 0.00 1.75
314 315 3.689649 GTCCTGGTGTTCGCATTTATTCT 59.310 43.478 0.00 0.00 0.00 2.40
315 316 3.689161 TCCTGGTGTTCGCATTTATTCTG 59.311 43.478 0.00 0.00 0.00 3.02
316 317 3.689161 CCTGGTGTTCGCATTTATTCTGA 59.311 43.478 0.00 0.00 0.00 3.27
317 318 4.155826 CCTGGTGTTCGCATTTATTCTGAA 59.844 41.667 0.00 0.00 0.00 3.02
318 319 5.163622 CCTGGTGTTCGCATTTATTCTGAAT 60.164 40.000 8.14 8.14 0.00 2.57
319 320 6.266168 TGGTGTTCGCATTTATTCTGAATT 57.734 33.333 8.38 0.00 0.00 2.17
320 321 6.686630 TGGTGTTCGCATTTATTCTGAATTT 58.313 32.000 8.38 0.00 0.00 1.82
321 322 7.821652 TGGTGTTCGCATTTATTCTGAATTTA 58.178 30.769 8.38 0.00 0.00 1.40
322 323 8.465999 TGGTGTTCGCATTTATTCTGAATTTAT 58.534 29.630 8.38 0.16 0.00 1.40
323 324 9.301153 GGTGTTCGCATTTATTCTGAATTTATT 57.699 29.630 8.38 0.00 0.00 1.40
337 338 9.771534 TTCTGAATTTATTTCAAAATTTCCGGT 57.228 25.926 0.00 0.00 43.64 5.28
338 339 9.202273 TCTGAATTTATTTCAAAATTTCCGGTG 57.798 29.630 0.00 0.00 43.64 4.94
339 340 9.202273 CTGAATTTATTTCAAAATTTCCGGTGA 57.798 29.630 0.00 0.00 43.64 4.02
340 341 9.717942 TGAATTTATTTCAAAATTTCCGGTGAT 57.282 25.926 0.00 0.00 41.38 3.06
341 342 9.971744 GAATTTATTTCAAAATTTCCGGTGATG 57.028 29.630 0.00 0.00 38.77 3.07
342 343 6.959671 TTATTTCAAAATTTCCGGTGATGC 57.040 33.333 0.00 0.00 0.00 3.91
343 344 2.627863 TCAAAATTTCCGGTGATGCG 57.372 45.000 0.00 0.00 0.00 4.73
344 345 0.991344 CAAAATTTCCGGTGATGCGC 59.009 50.000 0.00 0.00 0.00 6.09
345 346 0.600557 AAAATTTCCGGTGATGCGCA 59.399 45.000 14.96 14.96 0.00 6.09
346 347 0.817013 AAATTTCCGGTGATGCGCAT 59.183 45.000 25.66 25.66 0.00 4.73
347 348 0.817013 AATTTCCGGTGATGCGCATT 59.183 45.000 26.12 8.31 0.00 3.56
348 349 0.381801 ATTTCCGGTGATGCGCATTC 59.618 50.000 26.12 19.54 0.00 2.67
349 350 0.957888 TTTCCGGTGATGCGCATTCA 60.958 50.000 26.12 19.83 0.00 2.57
350 351 1.368345 TTCCGGTGATGCGCATTCAG 61.368 55.000 26.12 19.44 0.00 3.02
351 352 2.108514 CCGGTGATGCGCATTCAGT 61.109 57.895 26.12 0.98 0.00 3.41
352 353 1.349627 CGGTGATGCGCATTCAGTC 59.650 57.895 26.12 12.97 0.00 3.51
353 354 1.349627 GGTGATGCGCATTCAGTCG 59.650 57.895 26.12 0.00 0.00 4.18
354 355 1.349627 GTGATGCGCATTCAGTCGG 59.650 57.895 26.12 0.00 0.00 4.79
355 356 1.083806 GTGATGCGCATTCAGTCGGA 61.084 55.000 26.12 0.00 0.00 4.55
356 357 0.807275 TGATGCGCATTCAGTCGGAG 60.807 55.000 26.12 0.00 0.00 4.63
357 358 0.528466 GATGCGCATTCAGTCGGAGA 60.528 55.000 26.12 0.00 0.00 3.71
358 359 0.108186 ATGCGCATTCAGTCGGAGAA 60.108 50.000 19.28 0.00 39.69 2.87
359 360 0.737367 TGCGCATTCAGTCGGAGAAG 60.737 55.000 5.66 0.00 39.69 2.85
360 361 1.424493 GCGCATTCAGTCGGAGAAGG 61.424 60.000 0.30 0.00 39.69 3.46
361 362 0.108615 CGCATTCAGTCGGAGAAGGT 60.109 55.000 0.00 0.00 39.69 3.50
362 363 1.134367 CGCATTCAGTCGGAGAAGGTA 59.866 52.381 0.00 0.00 39.69 3.08
363 364 2.223829 CGCATTCAGTCGGAGAAGGTAT 60.224 50.000 0.00 0.00 39.69 2.73
364 365 3.738281 CGCATTCAGTCGGAGAAGGTATT 60.738 47.826 0.00 0.00 39.69 1.89
365 366 4.192317 GCATTCAGTCGGAGAAGGTATTT 58.808 43.478 0.00 0.00 39.69 1.40
366 367 4.271291 GCATTCAGTCGGAGAAGGTATTTC 59.729 45.833 0.00 0.00 39.69 2.17
367 368 4.467198 TTCAGTCGGAGAAGGTATTTCC 57.533 45.455 0.00 0.00 39.69 3.13
371 372 1.836383 CGGAGAAGGTATTTCCGTCG 58.164 55.000 4.11 0.00 46.66 5.12
372 373 1.402968 CGGAGAAGGTATTTCCGTCGA 59.597 52.381 4.11 0.00 46.66 4.20
373 374 2.793933 CGGAGAAGGTATTTCCGTCGAC 60.794 54.545 5.18 5.18 46.66 4.20
374 375 2.426381 GGAGAAGGTATTTCCGTCGACT 59.574 50.000 14.70 0.00 46.66 4.18
375 376 3.629398 GGAGAAGGTATTTCCGTCGACTA 59.371 47.826 14.70 0.00 46.66 2.59
376 377 4.497173 GGAGAAGGTATTTCCGTCGACTAC 60.497 50.000 14.70 8.57 46.66 2.73
387 388 2.670635 TCGACTACGAGACGCCTAC 58.329 57.895 0.00 0.00 43.81 3.18
388 389 1.142185 TCGACTACGAGACGCCTACG 61.142 60.000 0.00 0.00 43.81 3.51
389 390 1.640604 GACTACGAGACGCCTACGG 59.359 63.158 0.00 0.00 46.04 4.02
399 400 2.793946 GCCTACGGCGACTTCGTA 59.206 61.111 16.62 0.00 39.62 3.43
400 401 1.137404 GCCTACGGCGACTTCGTAA 59.863 57.895 16.62 0.00 41.62 3.18
401 402 0.456653 GCCTACGGCGACTTCGTAAA 60.457 55.000 16.62 0.00 41.62 2.01
402 403 1.981254 CCTACGGCGACTTCGTAAAA 58.019 50.000 16.62 0.00 41.62 1.52
403 404 2.533266 CCTACGGCGACTTCGTAAAAT 58.467 47.619 16.62 0.00 41.62 1.82
404 405 2.533129 CCTACGGCGACTTCGTAAAATC 59.467 50.000 16.62 0.00 41.62 2.17
405 406 2.358939 ACGGCGACTTCGTAAAATCT 57.641 45.000 16.62 0.00 42.22 2.40
406 407 2.257034 ACGGCGACTTCGTAAAATCTC 58.743 47.619 16.62 0.00 42.22 2.75
407 408 2.256174 CGGCGACTTCGTAAAATCTCA 58.744 47.619 0.00 0.00 42.22 3.27
408 409 2.664568 CGGCGACTTCGTAAAATCTCAA 59.335 45.455 0.00 0.00 42.22 3.02
409 410 3.241678 CGGCGACTTCGTAAAATCTCAAG 60.242 47.826 0.00 0.00 42.22 3.02
410 411 3.924686 GGCGACTTCGTAAAATCTCAAGA 59.075 43.478 0.00 0.00 42.22 3.02
411 412 4.567159 GGCGACTTCGTAAAATCTCAAGAT 59.433 41.667 0.00 0.00 42.22 2.40
412 413 5.484958 GCGACTTCGTAAAATCTCAAGATG 58.515 41.667 0.00 0.00 42.22 2.90
413 414 5.288712 GCGACTTCGTAAAATCTCAAGATGA 59.711 40.000 0.00 0.00 42.22 2.92
414 415 6.019479 GCGACTTCGTAAAATCTCAAGATGAT 60.019 38.462 0.00 0.00 42.22 2.45
415 416 7.167635 GCGACTTCGTAAAATCTCAAGATGATA 59.832 37.037 0.00 0.00 42.22 2.15
416 417 9.186323 CGACTTCGTAAAATCTCAAGATGATAT 57.814 33.333 0.00 0.00 32.83 1.63
418 419 8.768955 ACTTCGTAAAATCTCAAGATGATATGC 58.231 33.333 0.00 0.00 34.49 3.14
419 420 7.658179 TCGTAAAATCTCAAGATGATATGCC 57.342 36.000 0.00 0.00 34.49 4.40
420 421 6.366061 TCGTAAAATCTCAAGATGATATGCCG 59.634 38.462 0.00 0.00 34.49 5.69
421 422 6.366061 CGTAAAATCTCAAGATGATATGCCGA 59.634 38.462 0.00 0.00 34.49 5.54
422 423 6.551385 AAAATCTCAAGATGATATGCCGAC 57.449 37.500 0.00 0.00 34.49 4.79
423 424 5.480642 AATCTCAAGATGATATGCCGACT 57.519 39.130 0.00 0.00 34.49 4.18
424 425 4.944619 TCTCAAGATGATATGCCGACTT 57.055 40.909 0.00 0.00 0.00 3.01
425 426 6.596309 ATCTCAAGATGATATGCCGACTTA 57.404 37.500 0.00 0.00 32.68 2.24
426 427 6.018589 TCTCAAGATGATATGCCGACTTAG 57.981 41.667 0.00 0.00 0.00 2.18
427 428 5.536538 TCTCAAGATGATATGCCGACTTAGT 59.463 40.000 0.00 0.00 0.00 2.24
428 429 5.773575 TCAAGATGATATGCCGACTTAGTC 58.226 41.667 1.64 1.64 0.00 2.59
429 430 5.536538 TCAAGATGATATGCCGACTTAGTCT 59.463 40.000 10.83 0.00 0.00 3.24
430 431 6.040955 TCAAGATGATATGCCGACTTAGTCTT 59.959 38.462 10.83 0.00 0.00 3.01
431 432 6.412362 AGATGATATGCCGACTTAGTCTTT 57.588 37.500 10.83 0.00 0.00 2.52
432 433 6.451393 AGATGATATGCCGACTTAGTCTTTC 58.549 40.000 10.83 0.26 0.00 2.62
433 434 4.607955 TGATATGCCGACTTAGTCTTTCG 58.392 43.478 10.83 0.00 0.00 3.46
434 435 4.337274 TGATATGCCGACTTAGTCTTTCGA 59.663 41.667 10.83 0.00 34.62 3.71
435 436 3.587797 ATGCCGACTTAGTCTTTCGAA 57.412 42.857 10.83 0.00 34.62 3.71
436 437 2.942710 TGCCGACTTAGTCTTTCGAAG 58.057 47.619 10.83 0.00 34.62 3.79
437 438 2.555325 TGCCGACTTAGTCTTTCGAAGA 59.445 45.455 10.83 0.00 34.62 2.87
438 439 3.192844 TGCCGACTTAGTCTTTCGAAGAT 59.807 43.478 10.83 0.00 40.18 2.40
439 440 3.548268 GCCGACTTAGTCTTTCGAAGATG 59.452 47.826 10.83 0.00 40.18 2.90
440 441 3.548268 CCGACTTAGTCTTTCGAAGATGC 59.452 47.826 10.83 0.00 40.18 3.91
441 442 4.416620 CGACTTAGTCTTTCGAAGATGCT 58.583 43.478 10.83 0.00 40.18 3.79
442 443 4.497608 CGACTTAGTCTTTCGAAGATGCTC 59.502 45.833 10.83 0.00 40.18 4.26
443 444 5.392767 ACTTAGTCTTTCGAAGATGCTCA 57.607 39.130 0.00 0.00 40.18 4.26
444 445 5.971763 ACTTAGTCTTTCGAAGATGCTCAT 58.028 37.500 0.00 0.00 40.18 2.90
445 446 7.101652 ACTTAGTCTTTCGAAGATGCTCATA 57.898 36.000 0.00 0.00 40.18 2.15
446 447 7.199766 ACTTAGTCTTTCGAAGATGCTCATAG 58.800 38.462 0.00 0.00 40.18 2.23
447 448 4.942852 AGTCTTTCGAAGATGCTCATAGG 58.057 43.478 0.00 0.00 40.18 2.57
448 449 4.646945 AGTCTTTCGAAGATGCTCATAGGA 59.353 41.667 0.00 0.00 40.18 2.94
449 450 5.127845 AGTCTTTCGAAGATGCTCATAGGAA 59.872 40.000 0.00 0.00 40.18 3.36
450 451 5.988561 GTCTTTCGAAGATGCTCATAGGAAT 59.011 40.000 0.00 0.00 40.18 3.01
451 452 7.014711 AGTCTTTCGAAGATGCTCATAGGAATA 59.985 37.037 0.00 0.00 40.18 1.75
452 453 7.328249 GTCTTTCGAAGATGCTCATAGGAATAG 59.672 40.741 0.00 0.00 40.18 1.73
453 454 5.651387 TCGAAGATGCTCATAGGAATAGG 57.349 43.478 0.00 0.00 0.00 2.57
454 455 5.325239 TCGAAGATGCTCATAGGAATAGGA 58.675 41.667 0.00 0.00 0.00 2.94
455 456 5.954752 TCGAAGATGCTCATAGGAATAGGAT 59.045 40.000 0.00 0.00 0.00 3.24
456 457 6.041511 CGAAGATGCTCATAGGAATAGGATG 58.958 44.000 0.00 0.00 0.00 3.51
457 458 6.350864 CGAAGATGCTCATAGGAATAGGATGT 60.351 42.308 0.00 0.00 0.00 3.06
458 459 6.297080 AGATGCTCATAGGAATAGGATGTG 57.703 41.667 0.00 0.00 0.00 3.21
459 460 4.277515 TGCTCATAGGAATAGGATGTGC 57.722 45.455 0.00 0.00 33.82 4.57
460 461 3.257393 GCTCATAGGAATAGGATGTGCG 58.743 50.000 0.00 0.00 0.00 5.34
461 462 3.306364 GCTCATAGGAATAGGATGTGCGT 60.306 47.826 0.00 0.00 0.00 5.24
462 463 4.082190 GCTCATAGGAATAGGATGTGCGTA 60.082 45.833 0.00 0.00 0.00 4.42
463 464 5.394663 GCTCATAGGAATAGGATGTGCGTAT 60.395 44.000 0.00 0.00 0.00 3.06
464 465 6.208988 TCATAGGAATAGGATGTGCGTATC 57.791 41.667 0.00 0.00 0.00 2.24
465 466 5.952347 TCATAGGAATAGGATGTGCGTATCT 59.048 40.000 0.80 0.00 0.00 1.98
466 467 7.116736 TCATAGGAATAGGATGTGCGTATCTA 58.883 38.462 0.80 0.00 0.00 1.98
467 468 5.646577 AGGAATAGGATGTGCGTATCTAC 57.353 43.478 0.80 0.00 0.00 2.59
468 469 5.077564 AGGAATAGGATGTGCGTATCTACA 58.922 41.667 0.80 0.00 0.00 2.74
469 470 5.717178 AGGAATAGGATGTGCGTATCTACAT 59.283 40.000 0.00 0.00 40.04 2.29
470 471 6.211584 AGGAATAGGATGTGCGTATCTACATT 59.788 38.462 0.00 0.00 37.63 2.71
471 472 6.531948 GGAATAGGATGTGCGTATCTACATTC 59.468 42.308 0.00 0.00 37.63 2.67
472 473 4.937201 AGGATGTGCGTATCTACATTCA 57.063 40.909 0.00 0.00 37.63 2.57
473 474 5.474578 AGGATGTGCGTATCTACATTCAT 57.525 39.130 0.00 0.00 37.63 2.57
474 475 6.590234 AGGATGTGCGTATCTACATTCATA 57.410 37.500 0.00 0.00 37.63 2.15
475 476 7.175347 AGGATGTGCGTATCTACATTCATAT 57.825 36.000 0.00 0.00 37.63 1.78
476 477 7.038048 AGGATGTGCGTATCTACATTCATATG 58.962 38.462 0.00 0.00 37.63 1.78
477 478 7.035612 GGATGTGCGTATCTACATTCATATGA 58.964 38.462 0.00 0.00 37.63 2.15
478 479 7.545615 GGATGTGCGTATCTACATTCATATGAA 59.454 37.037 20.07 20.07 37.63 2.57
479 480 9.091784 GATGTGCGTATCTACATTCATATGAAT 57.908 33.333 22.65 22.65 44.93 2.57
504 505 9.717892 ATGAGTGTATATACGTATTTATGAGCG 57.282 33.333 14.33 0.00 0.00 5.03
505 506 7.695201 TGAGTGTATATACGTATTTATGAGCGC 59.305 37.037 14.33 0.00 0.00 5.92
506 507 7.759465 AGTGTATATACGTATTTATGAGCGCT 58.241 34.615 11.27 11.27 0.00 5.92
507 508 8.242053 AGTGTATATACGTATTTATGAGCGCTT 58.758 33.333 13.26 0.00 0.00 4.68
508 509 9.494479 GTGTATATACGTATTTATGAGCGCTTA 57.506 33.333 13.26 8.30 0.00 3.09
509 510 9.494479 TGTATATACGTATTTATGAGCGCTTAC 57.506 33.333 13.26 8.08 0.00 2.34
510 511 5.987264 ATACGTATTTATGAGCGCTTACG 57.013 39.130 26.72 26.72 44.07 3.18
511 512 3.699067 ACGTATTTATGAGCGCTTACGT 58.301 40.909 27.79 27.79 42.83 3.57
512 513 4.107622 ACGTATTTATGAGCGCTTACGTT 58.892 39.130 27.79 16.72 41.81 3.99
513 514 4.563976 ACGTATTTATGAGCGCTTACGTTT 59.436 37.500 27.79 13.32 41.81 3.60
514 515 4.890654 CGTATTTATGAGCGCTTACGTTTG 59.109 41.667 22.50 3.02 42.83 2.93
515 516 4.939509 ATTTATGAGCGCTTACGTTTGT 57.060 36.364 13.26 0.00 42.83 2.83
516 517 6.291217 CGTATTTATGAGCGCTTACGTTTGTA 60.291 38.462 22.50 2.01 42.83 2.41
517 518 4.828291 TTATGAGCGCTTACGTTTGTAC 57.172 40.909 13.26 0.00 42.83 2.90
518 519 2.427232 TGAGCGCTTACGTTTGTACT 57.573 45.000 13.26 0.00 42.83 2.73
519 520 2.055838 TGAGCGCTTACGTTTGTACTG 58.944 47.619 13.26 0.00 42.83 2.74
520 521 1.389106 GAGCGCTTACGTTTGTACTGG 59.611 52.381 13.26 0.00 42.83 4.00
521 522 0.441145 GCGCTTACGTTTGTACTGGG 59.559 55.000 0.00 0.00 42.83 4.45
522 523 1.787012 CGCTTACGTTTGTACTGGGT 58.213 50.000 0.00 0.00 33.53 4.51
523 524 2.137523 CGCTTACGTTTGTACTGGGTT 58.862 47.619 0.00 0.00 33.53 4.11
524 525 3.316283 CGCTTACGTTTGTACTGGGTTA 58.684 45.455 0.00 0.00 33.53 2.85
525 526 3.740321 CGCTTACGTTTGTACTGGGTTAA 59.260 43.478 0.00 0.00 33.53 2.01
526 527 4.210955 CGCTTACGTTTGTACTGGGTTAAA 59.789 41.667 0.00 0.00 33.53 1.52
527 528 5.277250 CGCTTACGTTTGTACTGGGTTAAAA 60.277 40.000 0.00 0.00 33.53 1.52
528 529 6.493978 GCTTACGTTTGTACTGGGTTAAAAA 58.506 36.000 0.00 0.00 0.00 1.94
592 594 5.745312 TGGTCGATTCAATATAGCAGGAT 57.255 39.130 0.00 0.00 0.00 3.24
673 723 7.903145 TCTACTTTGTTAGCTGATCTTGGTTA 58.097 34.615 0.00 0.00 0.00 2.85
695 745 3.393800 CCAAGTGGTTCTACACACTCTG 58.606 50.000 0.00 0.00 46.49 3.35
741 791 0.894835 AAATGTCAATGCCCCGTTCC 59.105 50.000 0.00 0.00 0.00 3.62
791 852 3.850122 CGAGATATACCAATGCTCGGA 57.150 47.619 0.00 0.00 43.25 4.55
864 925 4.918810 ATTGAAGGTTGAAACTTTCGCT 57.081 36.364 11.85 1.53 44.95 4.93
877 938 4.043037 ACTTTCGCTCCCGTCTATTAAG 57.957 45.455 0.00 0.00 35.54 1.85
879 940 3.431922 TTCGCTCCCGTCTATTAAGTG 57.568 47.619 0.00 0.00 35.54 3.16
880 941 1.066605 TCGCTCCCGTCTATTAAGTGC 59.933 52.381 0.00 0.00 35.54 4.40
886 947 2.098607 CCCGTCTATTAAGTGCACGAGA 59.901 50.000 12.01 7.68 32.08 4.04
887 948 3.243434 CCCGTCTATTAAGTGCACGAGAT 60.243 47.826 12.01 8.97 32.08 2.75
888 949 4.023450 CCCGTCTATTAAGTGCACGAGATA 60.023 45.833 12.01 9.63 32.08 1.98
889 950 5.147865 CCGTCTATTAAGTGCACGAGATAG 58.852 45.833 20.76 20.76 32.08 2.08
890 951 5.049612 CCGTCTATTAAGTGCACGAGATAGA 60.050 44.000 23.31 23.31 32.08 1.98
891 952 5.846994 CGTCTATTAAGTGCACGAGATAGAC 59.153 44.000 32.33 32.33 40.82 2.59
931 998 4.285292 CCTTGCGTCGTCTATAAATACGT 58.715 43.478 0.00 0.00 39.99 3.57
1059 1126 1.037030 CCTCGCTCCTGCTTCTCTCT 61.037 60.000 0.00 0.00 36.97 3.10
1063 1130 1.473258 GCTCCTGCTTCTCTCTCAGA 58.527 55.000 0.00 0.00 36.03 3.27
1113 1180 7.517614 TGATGCTAAAGGTTTGTCAAACATA 57.482 32.000 25.72 15.61 43.15 2.29
1116 1183 9.423061 GATGCTAAAGGTTTGTCAAACATATTT 57.577 29.630 25.72 22.47 43.15 1.40
1117 1184 8.810652 TGCTAAAGGTTTGTCAAACATATTTC 57.189 30.769 25.72 10.47 43.15 2.17
1118 1185 7.870445 TGCTAAAGGTTTGTCAAACATATTTCC 59.130 33.333 25.72 16.99 43.15 3.13
1174 1241 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1175 1242 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1178 1245 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1180 1247 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1181 1248 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1182 1249 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1185 1252 3.885901 CTCTCTCTCTCTCTCTCTCTCGA 59.114 52.174 0.00 0.00 0.00 4.04
1406 1829 1.273154 TGGTAACGGTGGAGGGTATGA 60.273 52.381 0.00 0.00 42.51 2.15
1474 1954 2.404559 GTGGGTATGGTGGAGGATACA 58.595 52.381 0.00 0.00 41.41 2.29
1560 2040 2.751436 CATCCAGGCAACGGTGGG 60.751 66.667 0.90 0.00 46.39 4.61
1590 2073 0.179018 GCGGCTTTGGTGGAGGATAT 60.179 55.000 0.00 0.00 0.00 1.63
1615 2098 2.580276 GCGGTGGATACGGTGGAA 59.420 61.111 0.00 0.00 42.51 3.53
1621 2104 1.485066 GTGGATACGGTGGAAGTGGAT 59.515 52.381 0.00 0.00 42.51 3.41
1653 2172 2.766651 GGCGGGTATGGTGGAGGA 60.767 66.667 0.00 0.00 0.00 3.71
1706 2225 2.558795 GCTATCCTTGAGACGGCTATGA 59.441 50.000 0.00 0.00 0.00 2.15
1709 2228 2.666317 TCCTTGAGACGGCTATGATGA 58.334 47.619 0.00 0.00 0.00 2.92
1711 2230 3.068732 TCCTTGAGACGGCTATGATGAAG 59.931 47.826 0.00 0.00 0.00 3.02
1719 2238 2.301296 CGGCTATGATGAAGGAGGTCAT 59.699 50.000 0.00 0.00 41.01 3.06
1794 2317 7.532571 TCTGTGATGTGCTTGAATAAAAGATG 58.467 34.615 0.00 0.00 0.00 2.90
1808 2331 7.828717 TGAATAAAAGATGTGTCCTTATGCTCA 59.171 33.333 0.00 0.00 0.00 4.26
1841 2364 5.700832 TGTAATGTTGAGAAATCGAGCAAGT 59.299 36.000 0.00 0.00 0.00 3.16
1910 2433 7.442062 CCTTTCAAATTGATAGTGTTTGGCTTT 59.558 33.333 11.43 0.00 34.48 3.51
1942 2468 7.502226 TGGGCTTTGGTTACTAATGATAAGATG 59.498 37.037 0.00 0.00 0.00 2.90
1943 2469 7.719633 GGGCTTTGGTTACTAATGATAAGATGA 59.280 37.037 0.00 0.00 0.00 2.92
1944 2470 9.289782 GGCTTTGGTTACTAATGATAAGATGAT 57.710 33.333 0.00 0.00 0.00 2.45
1990 2516 6.837471 AGTGTAGTCTTGGTTTAGTCCTAG 57.163 41.667 0.00 0.00 0.00 3.02
2083 2609 3.745975 CGTGTGTTTACATGATGTGGTCT 59.254 43.478 8.61 0.00 44.82 3.85
2106 2632 5.982356 TCAGAGTCAATATTCCTTGTCTGG 58.018 41.667 0.00 0.00 33.41 3.86
2229 2755 2.173143 TGGGTTCTCGGTAAACCAAACT 59.827 45.455 13.88 0.00 43.29 2.66
2311 2837 2.222819 GCTGTCGGAAAAATACTCAGCG 60.223 50.000 0.00 0.00 37.62 5.18
2339 2866 4.911514 AAACACTCAACCAATACACACC 57.088 40.909 0.00 0.00 0.00 4.16
2492 3020 3.096852 TGGAAGCTCTCGAACCTATTCA 58.903 45.455 0.00 0.00 34.14 2.57
2497 3025 4.363999 AGCTCTCGAACCTATTCATTTCG 58.636 43.478 0.00 0.00 42.75 3.46
2524 3054 3.819564 CATAGATGGAGTGTTTCGGGA 57.180 47.619 0.00 0.00 0.00 5.14
2533 3098 2.616842 GAGTGTTTCGGGACATGTTTGT 59.383 45.455 0.00 0.00 39.32 2.83
2539 3104 5.533154 TGTTTCGGGACATGTTTGTAGAATT 59.467 36.000 0.00 0.00 35.79 2.17
2543 3108 4.600062 GGGACATGTTTGTAGAATTCCCT 58.400 43.478 0.00 0.00 35.79 4.20
2545 3110 6.365520 GGGACATGTTTGTAGAATTCCCTAT 58.634 40.000 0.00 0.00 35.79 2.57
2557 3122 0.901827 TTCCCTATGCAAGCGACTCA 59.098 50.000 0.00 0.00 0.00 3.41
2673 3239 1.433837 GACACGTGACCCGCTTTGTT 61.434 55.000 25.01 0.00 41.42 2.83
2679 3245 1.336755 GTGACCCGCTTTGTTGAATGT 59.663 47.619 0.00 0.00 0.00 2.71
2684 3250 0.109781 CGCTTTGTTGAATGTCGGGG 60.110 55.000 0.00 0.00 0.00 5.73
2732 3299 6.843069 TTTTAGCAGTGAAAAATCTTTGCC 57.157 33.333 0.00 0.00 32.21 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.584157 TGGAGCAAAATTTATAAGTCACAACAT 58.416 29.630 0.00 0.00 0.00 2.71
6 7 7.865385 GTGGAGCAAAATTTATAAGTCACAACA 59.135 33.333 0.00 0.00 0.00 3.33
7 8 7.865385 TGTGGAGCAAAATTTATAAGTCACAAC 59.135 33.333 0.00 0.00 0.00 3.32
8 9 7.946207 TGTGGAGCAAAATTTATAAGTCACAA 58.054 30.769 0.00 0.00 0.00 3.33
9 10 7.517614 TGTGGAGCAAAATTTATAAGTCACA 57.482 32.000 0.00 0.62 0.00 3.58
10 11 7.865385 TGTTGTGGAGCAAAATTTATAAGTCAC 59.135 33.333 0.00 0.00 39.03 3.67
11 12 7.865385 GTGTTGTGGAGCAAAATTTATAAGTCA 59.135 33.333 0.00 0.00 39.03 3.41
12 13 8.082242 AGTGTTGTGGAGCAAAATTTATAAGTC 58.918 33.333 0.00 0.00 39.03 3.01
13 14 7.867403 CAGTGTTGTGGAGCAAAATTTATAAGT 59.133 33.333 0.00 0.00 39.03 2.24
14 15 7.329226 CCAGTGTTGTGGAGCAAAATTTATAAG 59.671 37.037 0.00 0.00 40.44 1.73
15 16 7.151308 CCAGTGTTGTGGAGCAAAATTTATAA 58.849 34.615 0.00 0.00 40.44 0.98
16 17 6.266558 ACCAGTGTTGTGGAGCAAAATTTATA 59.733 34.615 0.00 0.00 40.44 0.98
17 18 5.070313 ACCAGTGTTGTGGAGCAAAATTTAT 59.930 36.000 0.00 0.00 40.44 1.40
18 19 4.404073 ACCAGTGTTGTGGAGCAAAATTTA 59.596 37.500 0.00 0.00 40.44 1.40
19 20 3.197549 ACCAGTGTTGTGGAGCAAAATTT 59.802 39.130 0.00 0.00 40.44 1.82
20 21 2.765699 ACCAGTGTTGTGGAGCAAAATT 59.234 40.909 0.00 0.00 40.44 1.82
21 22 2.362077 GACCAGTGTTGTGGAGCAAAAT 59.638 45.455 0.00 0.00 40.44 1.82
22 23 1.748493 GACCAGTGTTGTGGAGCAAAA 59.252 47.619 0.00 0.00 40.44 2.44
23 24 1.064758 AGACCAGTGTTGTGGAGCAAA 60.065 47.619 0.00 0.00 40.44 3.68
24 25 0.546122 AGACCAGTGTTGTGGAGCAA 59.454 50.000 0.00 0.00 40.44 3.91
25 26 0.546122 AAGACCAGTGTTGTGGAGCA 59.454 50.000 0.00 0.00 40.44 4.26
26 27 1.230324 GAAGACCAGTGTTGTGGAGC 58.770 55.000 0.00 0.00 40.44 4.70
27 28 2.614057 GTTGAAGACCAGTGTTGTGGAG 59.386 50.000 0.00 0.00 40.44 3.86
28 29 2.026729 TGTTGAAGACCAGTGTTGTGGA 60.027 45.455 0.00 0.00 40.44 4.02
29 30 2.364632 TGTTGAAGACCAGTGTTGTGG 58.635 47.619 0.00 0.00 44.01 4.17
30 31 3.427503 GGTTGTTGAAGACCAGTGTTGTG 60.428 47.826 0.00 0.00 35.95 3.33
31 32 2.752903 GGTTGTTGAAGACCAGTGTTGT 59.247 45.455 0.00 0.00 35.95 3.32
32 33 2.223249 CGGTTGTTGAAGACCAGTGTTG 60.223 50.000 0.00 0.00 35.63 3.33
33 34 2.014128 CGGTTGTTGAAGACCAGTGTT 58.986 47.619 0.00 0.00 35.63 3.32
34 35 1.065709 ACGGTTGTTGAAGACCAGTGT 60.066 47.619 0.00 0.00 35.63 3.55
35 36 1.663695 ACGGTTGTTGAAGACCAGTG 58.336 50.000 0.00 0.00 35.63 3.66
36 37 2.413310 AACGGTTGTTGAAGACCAGT 57.587 45.000 0.00 0.00 36.81 4.00
46 47 2.101380 GTGCGCACAACGGTTGTT 59.899 55.556 34.52 6.93 43.23 2.83
47 48 4.230863 CGTGCGCACAACGGTTGT 62.231 61.111 37.03 20.23 46.75 3.32
48 49 4.230863 ACGTGCGCACAACGGTTG 62.231 61.111 37.03 22.26 43.93 3.77
49 50 4.230863 CACGTGCGCACAACGGTT 62.231 61.111 37.03 12.94 43.93 4.44
51 52 4.936248 CACACGTGCGCACAACGG 62.936 66.667 37.03 24.03 43.93 4.44
53 54 2.647481 CACACACGTGCGCACAAC 60.647 61.111 37.03 13.96 36.06 3.32
61 62 3.057019 AGTACTTACATGCACACACGTG 58.943 45.455 15.48 15.48 46.56 4.49
62 63 3.005472 AGAGTACTTACATGCACACACGT 59.995 43.478 0.00 0.00 0.00 4.49
63 64 3.575630 AGAGTACTTACATGCACACACG 58.424 45.455 0.00 0.00 0.00 4.49
64 65 4.810790 AGAGAGTACTTACATGCACACAC 58.189 43.478 0.00 0.00 0.00 3.82
65 66 4.082190 GGAGAGAGTACTTACATGCACACA 60.082 45.833 0.00 0.00 0.00 3.72
66 67 4.425520 GGAGAGAGTACTTACATGCACAC 58.574 47.826 0.00 0.00 0.00 3.82
67 68 3.128764 CGGAGAGAGTACTTACATGCACA 59.871 47.826 0.00 0.00 0.00 4.57
68 69 3.128938 ACGGAGAGAGTACTTACATGCAC 59.871 47.826 0.00 0.00 0.00 4.57
69 70 3.353557 ACGGAGAGAGTACTTACATGCA 58.646 45.455 0.00 0.00 0.00 3.96
70 71 4.352887 GAACGGAGAGAGTACTTACATGC 58.647 47.826 0.00 0.00 0.00 4.06
71 72 4.398358 TGGAACGGAGAGAGTACTTACATG 59.602 45.833 0.00 0.00 0.00 3.21
72 73 4.597004 TGGAACGGAGAGAGTACTTACAT 58.403 43.478 0.00 0.00 0.00 2.29
73 74 4.025040 TGGAACGGAGAGAGTACTTACA 57.975 45.455 0.00 0.00 0.00 2.41
74 75 5.382618 TTTGGAACGGAGAGAGTACTTAC 57.617 43.478 0.00 0.00 0.00 2.34
75 76 6.600882 AATTTGGAACGGAGAGAGTACTTA 57.399 37.500 0.00 0.00 0.00 2.24
76 77 5.485209 AATTTGGAACGGAGAGAGTACTT 57.515 39.130 0.00 0.00 0.00 2.24
77 78 5.715753 AGTAATTTGGAACGGAGAGAGTACT 59.284 40.000 0.00 0.00 0.00 2.73
78 79 5.963594 AGTAATTTGGAACGGAGAGAGTAC 58.036 41.667 0.00 0.00 0.00 2.73
79 80 5.163683 CGAGTAATTTGGAACGGAGAGAGTA 60.164 44.000 0.00 0.00 0.00 2.59
80 81 4.380655 CGAGTAATTTGGAACGGAGAGAGT 60.381 45.833 0.00 0.00 0.00 3.24
81 82 4.106197 CGAGTAATTTGGAACGGAGAGAG 58.894 47.826 0.00 0.00 0.00 3.20
82 83 3.508793 ACGAGTAATTTGGAACGGAGAGA 59.491 43.478 0.00 0.00 0.00 3.10
83 84 3.846360 ACGAGTAATTTGGAACGGAGAG 58.154 45.455 0.00 0.00 0.00 3.20
84 85 3.671433 CGACGAGTAATTTGGAACGGAGA 60.671 47.826 0.00 0.00 0.00 3.71
85 86 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
86 87 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
87 88 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
88 89 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
89 90 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
90 91 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
91 92 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
92 93 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
93 94 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
94 95 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
95 96 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
96 97 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
97 98 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
98 99 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
99 100 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
100 101 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
101 102 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
102 103 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
103 104 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
116 117 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
117 118 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
118 119 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
119 120 5.967088 GTCGTCGTGGTTTTAGTTCAAATTT 59.033 36.000 0.00 0.00 0.00 1.82
120 121 5.504392 GTCGTCGTGGTTTTAGTTCAAATT 58.496 37.500 0.00 0.00 0.00 1.82
121 122 4.318263 CGTCGTCGTGGTTTTAGTTCAAAT 60.318 41.667 0.00 0.00 0.00 2.32
122 123 3.000122 CGTCGTCGTGGTTTTAGTTCAAA 60.000 43.478 0.00 0.00 0.00 2.69
123 124 2.535166 CGTCGTCGTGGTTTTAGTTCAA 59.465 45.455 0.00 0.00 0.00 2.69
124 125 2.118683 CGTCGTCGTGGTTTTAGTTCA 58.881 47.619 0.00 0.00 0.00 3.18
125 126 2.384382 TCGTCGTCGTGGTTTTAGTTC 58.616 47.619 1.33 0.00 38.33 3.01
126 127 2.223572 ACTCGTCGTCGTGGTTTTAGTT 60.224 45.455 8.79 0.00 38.33 2.24
127 128 1.334869 ACTCGTCGTCGTGGTTTTAGT 59.665 47.619 8.79 0.00 38.33 2.24
128 129 2.042104 ACTCGTCGTCGTGGTTTTAG 57.958 50.000 8.79 0.00 38.33 1.85
129 130 3.617540 TTACTCGTCGTCGTGGTTTTA 57.382 42.857 8.79 0.00 38.33 1.52
130 131 2.490328 TTACTCGTCGTCGTGGTTTT 57.510 45.000 8.79 0.00 38.33 2.43
131 132 2.712057 ATTACTCGTCGTCGTGGTTT 57.288 45.000 8.79 0.00 38.33 3.27
132 133 2.712057 AATTACTCGTCGTCGTGGTT 57.288 45.000 8.79 0.00 38.33 3.67
133 134 2.712057 AAATTACTCGTCGTCGTGGT 57.288 45.000 8.79 8.38 38.33 4.16
134 135 4.560035 ACATAAAATTACTCGTCGTCGTGG 59.440 41.667 8.79 3.31 38.33 4.94
135 136 5.675778 ACATAAAATTACTCGTCGTCGTG 57.324 39.130 1.33 2.08 38.33 4.35
136 137 5.858049 TCAACATAAAATTACTCGTCGTCGT 59.142 36.000 1.33 0.00 38.33 4.34
137 138 6.308710 TCAACATAAAATTACTCGTCGTCG 57.691 37.500 0.00 0.00 38.55 5.12
138 139 7.727017 ACTTCAACATAAAATTACTCGTCGTC 58.273 34.615 0.00 0.00 0.00 4.20
139 140 7.647907 ACTTCAACATAAAATTACTCGTCGT 57.352 32.000 0.00 0.00 0.00 4.34
154 155 9.466497 AGATTTGGTGTGAATATACTTCAACAT 57.534 29.630 0.00 0.00 0.00 2.71
155 156 8.862325 AGATTTGGTGTGAATATACTTCAACA 57.138 30.769 0.00 0.00 0.00 3.33
160 161 9.905713 ACACATAGATTTGGTGTGAATATACTT 57.094 29.630 11.23 0.00 44.48 2.24
170 171 3.153369 TGGCACACATAGATTTGGTGT 57.847 42.857 0.00 0.00 45.96 4.16
185 186 1.065031 CGCACGCACTAAAATGGCAC 61.065 55.000 0.00 0.00 0.00 5.01
186 187 1.208870 CGCACGCACTAAAATGGCA 59.791 52.632 0.00 0.00 0.00 4.92
187 188 1.065031 CACGCACGCACTAAAATGGC 61.065 55.000 0.00 0.00 0.00 4.40
188 189 0.237235 ACACGCACGCACTAAAATGG 59.763 50.000 0.00 0.00 0.00 3.16
189 190 1.317332 CACACGCACGCACTAAAATG 58.683 50.000 0.00 0.00 0.00 2.32
190 191 0.941542 ACACACGCACGCACTAAAAT 59.058 45.000 0.00 0.00 0.00 1.82
191 192 1.568606 TACACACGCACGCACTAAAA 58.431 45.000 0.00 0.00 0.00 1.52
192 193 1.523515 CTTACACACGCACGCACTAAA 59.476 47.619 0.00 0.00 0.00 1.85
193 194 1.133407 CTTACACACGCACGCACTAA 58.867 50.000 0.00 0.00 0.00 2.24
194 195 1.279527 GCTTACACACGCACGCACTA 61.280 55.000 0.00 0.00 0.00 2.74
195 196 2.594962 GCTTACACACGCACGCACT 61.595 57.895 0.00 0.00 0.00 4.40
196 197 2.127758 GCTTACACACGCACGCAC 60.128 61.111 0.00 0.00 0.00 5.34
197 198 2.586357 TGCTTACACACGCACGCA 60.586 55.556 0.00 0.00 0.00 5.24
198 199 1.626654 ATCTGCTTACACACGCACGC 61.627 55.000 0.00 0.00 31.95 5.34
199 200 1.624487 TATCTGCTTACACACGCACG 58.376 50.000 0.00 0.00 31.95 5.34
200 201 4.600012 AAATATCTGCTTACACACGCAC 57.400 40.909 0.00 0.00 31.95 5.34
201 202 6.918892 ATAAAATATCTGCTTACACACGCA 57.081 33.333 0.00 0.00 34.54 5.24
202 203 8.495949 ACATATAAAATATCTGCTTACACACGC 58.504 33.333 0.00 0.00 0.00 5.34
203 204 9.797473 CACATATAAAATATCTGCTTACACACG 57.203 33.333 0.00 0.00 0.00 4.49
204 205 9.599322 GCACATATAAAATATCTGCTTACACAC 57.401 33.333 1.37 0.00 0.00 3.82
205 206 8.495148 CGCACATATAAAATATCTGCTTACACA 58.505 33.333 5.87 0.00 0.00 3.72
206 207 8.708742 TCGCACATATAAAATATCTGCTTACAC 58.291 33.333 5.87 0.00 0.00 2.90
207 208 8.825667 TCGCACATATAAAATATCTGCTTACA 57.174 30.769 5.87 0.00 0.00 2.41
208 209 9.530129 GTTCGCACATATAAAATATCTGCTTAC 57.470 33.333 5.87 1.65 0.00 2.34
209 210 8.717821 GGTTCGCACATATAAAATATCTGCTTA 58.282 33.333 5.87 0.00 0.00 3.09
210 211 7.228507 TGGTTCGCACATATAAAATATCTGCTT 59.771 33.333 5.87 0.00 0.00 3.91
211 212 6.710295 TGGTTCGCACATATAAAATATCTGCT 59.290 34.615 5.87 0.00 0.00 4.24
212 213 6.898041 TGGTTCGCACATATAAAATATCTGC 58.102 36.000 0.00 0.00 0.00 4.26
213 214 7.803189 GGTTGGTTCGCACATATAAAATATCTG 59.197 37.037 0.00 0.00 0.00 2.90
214 215 7.719633 AGGTTGGTTCGCACATATAAAATATCT 59.280 33.333 0.00 0.00 0.00 1.98
215 216 7.871853 AGGTTGGTTCGCACATATAAAATATC 58.128 34.615 0.00 0.00 0.00 1.63
216 217 7.817418 AGGTTGGTTCGCACATATAAAATAT 57.183 32.000 0.00 0.00 0.00 1.28
217 218 8.779303 CATAGGTTGGTTCGCACATATAAAATA 58.221 33.333 0.00 0.00 0.00 1.40
218 219 7.500892 TCATAGGTTGGTTCGCACATATAAAAT 59.499 33.333 0.00 0.00 0.00 1.82
219 220 6.824196 TCATAGGTTGGTTCGCACATATAAAA 59.176 34.615 0.00 0.00 0.00 1.52
220 221 6.350103 TCATAGGTTGGTTCGCACATATAAA 58.650 36.000 0.00 0.00 0.00 1.40
221 222 5.919755 TCATAGGTTGGTTCGCACATATAA 58.080 37.500 0.00 0.00 0.00 0.98
222 223 5.538849 TCATAGGTTGGTTCGCACATATA 57.461 39.130 0.00 0.00 0.00 0.86
223 224 4.415881 TCATAGGTTGGTTCGCACATAT 57.584 40.909 0.00 0.00 0.00 1.78
224 225 3.897141 TCATAGGTTGGTTCGCACATA 57.103 42.857 0.00 0.00 0.00 2.29
225 226 2.779755 TCATAGGTTGGTTCGCACAT 57.220 45.000 0.00 0.00 0.00 3.21
226 227 2.779755 ATCATAGGTTGGTTCGCACA 57.220 45.000 0.00 0.00 0.00 4.57
227 228 4.439057 TCTAATCATAGGTTGGTTCGCAC 58.561 43.478 0.00 0.00 29.37 5.34
228 229 4.746535 TCTAATCATAGGTTGGTTCGCA 57.253 40.909 0.00 0.00 29.37 5.10
229 230 4.452455 CCATCTAATCATAGGTTGGTTCGC 59.548 45.833 0.00 0.00 32.52 4.70
230 231 5.611374 ACCATCTAATCATAGGTTGGTTCG 58.389 41.667 0.00 0.00 40.31 3.95
236 237 6.332635 TCCATCCAACCATCTAATCATAGGTT 59.667 38.462 0.00 0.00 42.94 3.50
237 238 5.851693 TCCATCCAACCATCTAATCATAGGT 59.148 40.000 0.00 0.00 0.00 3.08
238 239 6.176183 GTCCATCCAACCATCTAATCATAGG 58.824 44.000 0.00 0.00 0.00 2.57
239 240 6.772605 TGTCCATCCAACCATCTAATCATAG 58.227 40.000 0.00 0.00 0.00 2.23
240 241 6.762077 TGTCCATCCAACCATCTAATCATA 57.238 37.500 0.00 0.00 0.00 2.15
241 242 5.651612 TGTCCATCCAACCATCTAATCAT 57.348 39.130 0.00 0.00 0.00 2.45
242 243 5.192927 GTTGTCCATCCAACCATCTAATCA 58.807 41.667 0.00 0.00 39.01 2.57
243 244 5.192927 TGTTGTCCATCCAACCATCTAATC 58.807 41.667 0.00 0.00 43.22 1.75
244 245 5.191727 TGTTGTCCATCCAACCATCTAAT 57.808 39.130 0.00 0.00 43.22 1.73
245 246 4.042809 ACTGTTGTCCATCCAACCATCTAA 59.957 41.667 0.00 0.00 43.22 2.10
246 247 3.587061 ACTGTTGTCCATCCAACCATCTA 59.413 43.478 0.00 0.00 43.22 1.98
247 248 2.376518 ACTGTTGTCCATCCAACCATCT 59.623 45.455 0.00 0.00 43.22 2.90
248 249 2.795329 ACTGTTGTCCATCCAACCATC 58.205 47.619 0.00 0.00 43.22 3.51
249 250 2.978156 ACTGTTGTCCATCCAACCAT 57.022 45.000 0.00 0.00 43.22 3.55
250 251 4.331968 GAATACTGTTGTCCATCCAACCA 58.668 43.478 0.00 0.00 43.22 3.67
251 252 3.694566 GGAATACTGTTGTCCATCCAACC 59.305 47.826 4.96 0.00 43.22 3.77
252 253 3.694566 GGGAATACTGTTGTCCATCCAAC 59.305 47.826 10.51 0.00 43.95 3.77
253 254 3.332187 TGGGAATACTGTTGTCCATCCAA 59.668 43.478 10.51 0.00 32.70 3.53
254 255 2.916269 TGGGAATACTGTTGTCCATCCA 59.084 45.455 10.51 0.00 32.70 3.41
255 256 3.545703 CTGGGAATACTGTTGTCCATCC 58.454 50.000 10.51 0.00 32.70 3.51
256 257 2.945668 GCTGGGAATACTGTTGTCCATC 59.054 50.000 10.51 0.00 32.70 3.51
257 258 2.357154 GGCTGGGAATACTGTTGTCCAT 60.357 50.000 10.51 0.00 32.70 3.41
258 259 1.004277 GGCTGGGAATACTGTTGTCCA 59.996 52.381 10.51 2.87 32.70 4.02
259 260 1.682087 GGGCTGGGAATACTGTTGTCC 60.682 57.143 1.80 1.80 0.00 4.02
260 261 1.004277 TGGGCTGGGAATACTGTTGTC 59.996 52.381 0.00 0.00 0.00 3.18
261 262 1.072266 TGGGCTGGGAATACTGTTGT 58.928 50.000 0.00 0.00 0.00 3.32
262 263 2.301346 GATGGGCTGGGAATACTGTTG 58.699 52.381 0.00 0.00 0.00 3.33
263 264 1.922447 TGATGGGCTGGGAATACTGTT 59.078 47.619 0.00 0.00 0.00 3.16
264 265 1.492176 CTGATGGGCTGGGAATACTGT 59.508 52.381 0.00 0.00 0.00 3.55
265 266 1.202855 CCTGATGGGCTGGGAATACTG 60.203 57.143 0.00 0.00 32.31 2.74
266 267 1.143813 CCTGATGGGCTGGGAATACT 58.856 55.000 0.00 0.00 32.31 2.12
267 268 1.140312 TCCTGATGGGCTGGGAATAC 58.860 55.000 0.00 0.00 36.34 1.89
268 269 2.138535 ATCCTGATGGGCTGGGAATA 57.861 50.000 0.00 0.00 36.34 1.75
269 270 1.146566 GAATCCTGATGGGCTGGGAAT 59.853 52.381 0.00 0.00 36.34 3.01
270 271 0.552848 GAATCCTGATGGGCTGGGAA 59.447 55.000 0.00 0.00 36.34 3.97
271 272 0.624206 TGAATCCTGATGGGCTGGGA 60.624 55.000 0.00 0.00 36.34 4.37
272 273 0.259647 TTGAATCCTGATGGGCTGGG 59.740 55.000 0.00 0.00 36.34 4.45
273 274 1.064166 ACTTGAATCCTGATGGGCTGG 60.064 52.381 0.00 0.00 36.97 4.85
274 275 2.295885 GACTTGAATCCTGATGGGCTG 58.704 52.381 0.00 0.00 34.39 4.85
275 276 1.213926 GGACTTGAATCCTGATGGGCT 59.786 52.381 0.00 0.00 35.68 5.19
276 277 1.685148 GGACTTGAATCCTGATGGGC 58.315 55.000 0.00 0.00 35.68 5.36
284 285 2.076863 CGAACACCAGGACTTGAATCC 58.923 52.381 0.00 0.00 39.28 3.01
285 286 1.464997 GCGAACACCAGGACTTGAATC 59.535 52.381 0.00 0.00 0.00 2.52
286 287 1.202758 TGCGAACACCAGGACTTGAAT 60.203 47.619 0.00 0.00 0.00 2.57
287 288 0.179234 TGCGAACACCAGGACTTGAA 59.821 50.000 0.00 0.00 0.00 2.69
288 289 0.396435 ATGCGAACACCAGGACTTGA 59.604 50.000 0.00 0.00 0.00 3.02
289 290 1.238439 AATGCGAACACCAGGACTTG 58.762 50.000 0.00 0.00 0.00 3.16
290 291 1.981256 AAATGCGAACACCAGGACTT 58.019 45.000 0.00 0.00 0.00 3.01
291 292 2.851263 TAAATGCGAACACCAGGACT 57.149 45.000 0.00 0.00 0.00 3.85
292 293 3.689649 AGAATAAATGCGAACACCAGGAC 59.310 43.478 0.00 0.00 0.00 3.85
293 294 3.689161 CAGAATAAATGCGAACACCAGGA 59.311 43.478 0.00 0.00 0.00 3.86
294 295 3.689161 TCAGAATAAATGCGAACACCAGG 59.311 43.478 0.00 0.00 0.00 4.45
295 296 4.944962 TCAGAATAAATGCGAACACCAG 57.055 40.909 0.00 0.00 0.00 4.00
296 297 5.895636 ATTCAGAATAAATGCGAACACCA 57.104 34.783 0.00 0.00 0.00 4.17
297 298 8.856490 ATAAATTCAGAATAAATGCGAACACC 57.144 30.769 0.00 0.00 0.00 4.16
314 315 9.717942 ATCACCGGAAATTTTGAAATAAATTCA 57.282 25.926 9.46 0.00 46.22 2.57
315 316 9.971744 CATCACCGGAAATTTTGAAATAAATTC 57.028 29.630 9.46 0.00 36.87 2.17
316 317 8.450180 GCATCACCGGAAATTTTGAAATAAATT 58.550 29.630 9.46 0.00 38.90 1.82
317 318 7.201513 CGCATCACCGGAAATTTTGAAATAAAT 60.202 33.333 9.46 0.00 0.00 1.40
318 319 6.090088 CGCATCACCGGAAATTTTGAAATAAA 59.910 34.615 9.46 0.00 0.00 1.40
319 320 5.574830 CGCATCACCGGAAATTTTGAAATAA 59.425 36.000 9.46 0.00 0.00 1.40
320 321 5.098893 CGCATCACCGGAAATTTTGAAATA 58.901 37.500 9.46 0.00 0.00 1.40
321 322 3.925913 CGCATCACCGGAAATTTTGAAAT 59.074 39.130 9.46 0.00 0.00 2.17
322 323 3.312828 CGCATCACCGGAAATTTTGAAA 58.687 40.909 9.46 0.00 0.00 2.69
323 324 2.924454 GCGCATCACCGGAAATTTTGAA 60.924 45.455 9.46 0.00 0.00 2.69
324 325 1.402194 GCGCATCACCGGAAATTTTGA 60.402 47.619 9.46 0.00 0.00 2.69
325 326 0.991344 GCGCATCACCGGAAATTTTG 59.009 50.000 9.46 0.00 0.00 2.44
326 327 0.600557 TGCGCATCACCGGAAATTTT 59.399 45.000 9.46 0.00 0.00 1.82
327 328 0.817013 ATGCGCATCACCGGAAATTT 59.183 45.000 19.28 0.00 30.90 1.82
328 329 0.817013 AATGCGCATCACCGGAAATT 59.183 45.000 25.53 0.76 30.90 1.82
329 330 0.381801 GAATGCGCATCACCGGAAAT 59.618 50.000 25.53 3.87 30.90 2.17
330 331 0.957888 TGAATGCGCATCACCGGAAA 60.958 50.000 25.53 2.10 30.90 3.13
331 332 1.368345 CTGAATGCGCATCACCGGAA 61.368 55.000 25.53 4.46 30.90 4.30
332 333 1.815003 CTGAATGCGCATCACCGGA 60.815 57.895 25.53 4.80 0.00 5.14
333 334 2.040213 GACTGAATGCGCATCACCGG 62.040 60.000 25.53 21.21 0.00 5.28
334 335 1.349627 GACTGAATGCGCATCACCG 59.650 57.895 25.53 18.28 0.00 4.94
335 336 1.349627 CGACTGAATGCGCATCACC 59.650 57.895 25.53 16.03 0.00 4.02
336 337 1.083806 TCCGACTGAATGCGCATCAC 61.084 55.000 25.53 20.34 0.00 3.06
337 338 0.807275 CTCCGACTGAATGCGCATCA 60.807 55.000 25.53 20.60 0.00 3.07
338 339 0.528466 TCTCCGACTGAATGCGCATC 60.528 55.000 25.53 17.12 0.00 3.91
339 340 0.108186 TTCTCCGACTGAATGCGCAT 60.108 50.000 19.28 19.28 0.00 4.73
340 341 0.737367 CTTCTCCGACTGAATGCGCA 60.737 55.000 14.96 14.96 0.00 6.09
341 342 1.424493 CCTTCTCCGACTGAATGCGC 61.424 60.000 0.00 0.00 0.00 6.09
342 343 0.108615 ACCTTCTCCGACTGAATGCG 60.109 55.000 0.00 0.00 0.00 4.73
343 344 2.961526 TACCTTCTCCGACTGAATGC 57.038 50.000 0.00 0.00 0.00 3.56
344 345 4.811557 GGAAATACCTTCTCCGACTGAATG 59.188 45.833 0.00 0.00 34.17 2.67
345 346 5.024785 GGAAATACCTTCTCCGACTGAAT 57.975 43.478 0.00 0.00 34.17 2.57
346 347 4.467198 GGAAATACCTTCTCCGACTGAA 57.533 45.455 0.00 0.00 34.17 3.02
353 354 2.426381 AGTCGACGGAAATACCTTCTCC 59.574 50.000 10.46 0.00 35.16 3.71
354 355 3.779271 AGTCGACGGAAATACCTTCTC 57.221 47.619 10.46 0.00 35.16 2.87
355 356 4.629251 GTAGTCGACGGAAATACCTTCT 57.371 45.455 10.46 0.00 35.16 2.85
368 369 0.300193 GTAGGCGTCTCGTAGTCGAC 59.700 60.000 7.70 7.70 41.35 4.20
369 370 1.142185 CGTAGGCGTCTCGTAGTCGA 61.142 60.000 0.00 0.00 44.12 4.20
370 371 1.272131 CGTAGGCGTCTCGTAGTCG 59.728 63.158 0.00 0.00 38.55 4.18
371 372 1.640604 CCGTAGGCGTCTCGTAGTC 59.359 63.158 0.00 0.00 46.14 2.59
372 373 3.805267 CCGTAGGCGTCTCGTAGT 58.195 61.111 0.00 0.00 46.14 2.73
384 385 3.432782 AGATTTTACGAAGTCGCCGTAG 58.567 45.455 0.00 0.00 43.93 3.51
385 386 3.119884 TGAGATTTTACGAAGTCGCCGTA 60.120 43.478 0.00 0.00 43.93 4.02
386 387 2.257034 GAGATTTTACGAAGTCGCCGT 58.743 47.619 0.00 0.00 43.93 5.68
387 388 2.256174 TGAGATTTTACGAAGTCGCCG 58.744 47.619 0.00 0.00 43.93 6.46
388 389 3.924686 TCTTGAGATTTTACGAAGTCGCC 59.075 43.478 0.00 0.00 43.93 5.54
389 390 5.288712 TCATCTTGAGATTTTACGAAGTCGC 59.711 40.000 0.00 0.00 35.39 5.19
390 391 6.871044 TCATCTTGAGATTTTACGAAGTCG 57.129 37.500 0.00 0.00 35.39 4.18
392 393 8.768955 GCATATCATCTTGAGATTTTACGAAGT 58.231 33.333 0.00 0.00 37.29 3.01
393 394 8.226448 GGCATATCATCTTGAGATTTTACGAAG 58.774 37.037 0.00 0.00 31.21 3.79
394 395 7.095649 CGGCATATCATCTTGAGATTTTACGAA 60.096 37.037 0.00 0.00 31.21 3.85
395 396 6.366061 CGGCATATCATCTTGAGATTTTACGA 59.634 38.462 0.00 0.00 31.21 3.43
396 397 6.366061 TCGGCATATCATCTTGAGATTTTACG 59.634 38.462 0.00 0.00 31.21 3.18
397 398 7.386299 AGTCGGCATATCATCTTGAGATTTTAC 59.614 37.037 0.00 0.00 31.21 2.01
398 399 7.445121 AGTCGGCATATCATCTTGAGATTTTA 58.555 34.615 0.00 0.00 31.21 1.52
399 400 6.294473 AGTCGGCATATCATCTTGAGATTTT 58.706 36.000 0.00 0.00 31.21 1.82
400 401 5.862845 AGTCGGCATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
401 402 5.480642 AGTCGGCATATCATCTTGAGATT 57.519 39.130 0.00 0.00 31.21 2.40
402 403 5.480642 AAGTCGGCATATCATCTTGAGAT 57.519 39.130 0.00 0.00 34.56 2.75
403 404 4.944619 AAGTCGGCATATCATCTTGAGA 57.055 40.909 0.00 0.00 0.00 3.27
404 405 5.777802 ACTAAGTCGGCATATCATCTTGAG 58.222 41.667 0.00 0.00 0.00 3.02
405 406 5.536538 AGACTAAGTCGGCATATCATCTTGA 59.463 40.000 0.00 0.00 37.67 3.02
406 407 5.777802 AGACTAAGTCGGCATATCATCTTG 58.222 41.667 0.00 0.00 37.67 3.02
407 408 6.412362 AAGACTAAGTCGGCATATCATCTT 57.588 37.500 0.00 0.00 37.67 2.40
408 409 6.412362 AAAGACTAAGTCGGCATATCATCT 57.588 37.500 0.00 0.00 37.67 2.90
409 410 5.343593 CGAAAGACTAAGTCGGCATATCATC 59.656 44.000 0.00 0.00 37.67 2.92
410 411 5.009710 TCGAAAGACTAAGTCGGCATATCAT 59.990 40.000 0.00 0.00 37.67 2.45
411 412 4.337274 TCGAAAGACTAAGTCGGCATATCA 59.663 41.667 0.00 0.00 37.67 2.15
412 413 4.856664 TCGAAAGACTAAGTCGGCATATC 58.143 43.478 0.00 0.00 37.67 1.63
413 414 4.913335 TCGAAAGACTAAGTCGGCATAT 57.087 40.909 0.00 0.00 37.67 1.78
414 415 4.397103 TCTTCGAAAGACTAAGTCGGCATA 59.603 41.667 0.00 0.00 41.84 3.14
415 416 3.192844 TCTTCGAAAGACTAAGTCGGCAT 59.807 43.478 0.00 0.00 41.84 4.40
416 417 2.555325 TCTTCGAAAGACTAAGTCGGCA 59.445 45.455 0.00 0.00 41.84 5.69
417 418 3.213249 TCTTCGAAAGACTAAGTCGGC 57.787 47.619 0.00 0.00 41.84 5.54
418 419 3.548268 GCATCTTCGAAAGACTAAGTCGG 59.452 47.826 0.00 0.00 41.01 4.79
419 420 4.416620 AGCATCTTCGAAAGACTAAGTCG 58.583 43.478 0.00 0.00 41.01 4.18
420 421 5.403246 TGAGCATCTTCGAAAGACTAAGTC 58.597 41.667 0.00 0.00 41.01 3.01
421 422 5.392767 TGAGCATCTTCGAAAGACTAAGT 57.607 39.130 0.00 0.00 41.01 2.24
422 423 6.640499 CCTATGAGCATCTTCGAAAGACTAAG 59.360 42.308 0.00 0.00 41.01 2.18
423 424 6.321435 TCCTATGAGCATCTTCGAAAGACTAA 59.679 38.462 0.00 0.00 41.01 2.24
424 425 5.828328 TCCTATGAGCATCTTCGAAAGACTA 59.172 40.000 0.00 0.00 41.01 2.59
425 426 4.646945 TCCTATGAGCATCTTCGAAAGACT 59.353 41.667 0.00 0.00 41.01 3.24
426 427 4.938080 TCCTATGAGCATCTTCGAAAGAC 58.062 43.478 0.00 0.00 41.01 3.01
427 428 5.598416 TTCCTATGAGCATCTTCGAAAGA 57.402 39.130 0.00 0.00 42.69 2.52
428 429 6.589523 CCTATTCCTATGAGCATCTTCGAAAG 59.410 42.308 0.00 0.00 34.92 2.62
429 430 6.267699 TCCTATTCCTATGAGCATCTTCGAAA 59.732 38.462 0.00 0.00 34.92 3.46
430 431 5.775195 TCCTATTCCTATGAGCATCTTCGAA 59.225 40.000 0.00 0.00 34.92 3.71
431 432 5.325239 TCCTATTCCTATGAGCATCTTCGA 58.675 41.667 0.00 0.00 34.92 3.71
432 433 5.651387 TCCTATTCCTATGAGCATCTTCG 57.349 43.478 0.00 0.00 34.92 3.79
433 434 6.817641 CACATCCTATTCCTATGAGCATCTTC 59.182 42.308 0.00 0.00 34.92 2.87
434 435 6.709281 CACATCCTATTCCTATGAGCATCTT 58.291 40.000 0.00 0.00 34.92 2.40
435 436 5.338219 GCACATCCTATTCCTATGAGCATCT 60.338 44.000 0.00 0.00 37.23 2.90
436 437 4.874966 GCACATCCTATTCCTATGAGCATC 59.125 45.833 0.00 0.00 37.23 3.91
437 438 4.622457 CGCACATCCTATTCCTATGAGCAT 60.622 45.833 0.00 0.00 37.14 3.79
438 439 3.306294 CGCACATCCTATTCCTATGAGCA 60.306 47.826 0.00 0.00 37.14 4.26
439 440 3.257393 CGCACATCCTATTCCTATGAGC 58.743 50.000 0.00 0.00 34.95 4.26
440 441 4.527509 ACGCACATCCTATTCCTATGAG 57.472 45.455 0.00 0.00 0.00 2.90
441 442 5.952347 AGATACGCACATCCTATTCCTATGA 59.048 40.000 0.00 0.00 0.00 2.15
442 443 6.214191 AGATACGCACATCCTATTCCTATG 57.786 41.667 0.00 0.00 0.00 2.23
443 444 6.890268 TGTAGATACGCACATCCTATTCCTAT 59.110 38.462 0.00 0.00 0.00 2.57
444 445 6.243148 TGTAGATACGCACATCCTATTCCTA 58.757 40.000 0.00 0.00 0.00 2.94
445 446 5.077564 TGTAGATACGCACATCCTATTCCT 58.922 41.667 0.00 0.00 0.00 3.36
446 447 5.386958 TGTAGATACGCACATCCTATTCC 57.613 43.478 0.00 0.00 0.00 3.01
447 448 7.090808 TGAATGTAGATACGCACATCCTATTC 58.909 38.462 0.00 0.00 34.32 1.75
448 449 6.993079 TGAATGTAGATACGCACATCCTATT 58.007 36.000 0.00 0.00 34.32 1.73
449 450 6.590234 TGAATGTAGATACGCACATCCTAT 57.410 37.500 0.00 0.00 34.32 2.57
450 451 6.590234 ATGAATGTAGATACGCACATCCTA 57.410 37.500 0.00 0.00 34.32 2.94
451 452 4.937201 TGAATGTAGATACGCACATCCT 57.063 40.909 0.00 0.00 34.32 3.24
452 453 7.035612 TCATATGAATGTAGATACGCACATCC 58.964 38.462 1.98 0.00 34.32 3.51
453 454 8.466086 TTCATATGAATGTAGATACGCACATC 57.534 34.615 14.23 0.00 34.32 3.06
478 479 9.717892 CGCTCATAAATACGTATATACACTCAT 57.282 33.333 8.83 0.00 0.00 2.90
479 480 7.695201 GCGCTCATAAATACGTATATACACTCA 59.305 37.037 8.83 0.00 0.00 3.41
480 481 7.909121 AGCGCTCATAAATACGTATATACACTC 59.091 37.037 2.64 0.00 0.00 3.51
481 482 7.759465 AGCGCTCATAAATACGTATATACACT 58.241 34.615 2.64 0.04 0.00 3.55
482 483 7.966157 AGCGCTCATAAATACGTATATACAC 57.034 36.000 2.64 0.00 0.00 2.90
483 484 9.494479 GTAAGCGCTCATAAATACGTATATACA 57.506 33.333 12.06 0.00 0.00 2.29
484 485 8.668069 CGTAAGCGCTCATAAATACGTATATAC 58.332 37.037 22.50 10.61 33.45 1.47
485 486 8.390354 ACGTAAGCGCTCATAAATACGTATATA 58.610 33.333 30.50 5.70 45.00 0.86
486 487 7.246311 ACGTAAGCGCTCATAAATACGTATAT 58.754 34.615 30.50 13.94 45.00 0.86
487 488 6.602179 ACGTAAGCGCTCATAAATACGTATA 58.398 36.000 30.50 6.71 45.00 1.47
488 489 5.455392 ACGTAAGCGCTCATAAATACGTAT 58.545 37.500 30.50 14.80 45.00 3.06
489 490 4.847633 ACGTAAGCGCTCATAAATACGTA 58.152 39.130 30.50 7.38 45.00 3.57
490 491 3.699067 ACGTAAGCGCTCATAAATACGT 58.301 40.909 27.79 27.79 42.92 3.57
491 492 4.687458 AACGTAAGCGCTCATAAATACG 57.313 40.909 26.72 26.72 42.83 3.06
492 493 5.792631 ACAAACGTAAGCGCTCATAAATAC 58.207 37.500 12.06 7.57 42.83 1.89
493 494 6.753279 AGTACAAACGTAAGCGCTCATAAATA 59.247 34.615 12.06 0.00 42.83 1.40
494 495 4.939509 ACAAACGTAAGCGCTCATAAAT 57.060 36.364 12.06 0.00 42.83 1.40
495 496 4.925054 AGTACAAACGTAAGCGCTCATAAA 59.075 37.500 12.06 0.00 42.83 1.40
496 497 4.325204 CAGTACAAACGTAAGCGCTCATAA 59.675 41.667 12.06 0.00 42.83 1.90
497 498 3.855379 CAGTACAAACGTAAGCGCTCATA 59.145 43.478 12.06 0.00 42.83 2.15
498 499 2.666508 CAGTACAAACGTAAGCGCTCAT 59.333 45.455 12.06 0.00 42.83 2.90
499 500 2.055838 CAGTACAAACGTAAGCGCTCA 58.944 47.619 12.06 0.00 42.83 4.26
500 501 1.389106 CCAGTACAAACGTAAGCGCTC 59.611 52.381 12.06 0.00 42.83 5.03
501 502 1.425412 CCAGTACAAACGTAAGCGCT 58.575 50.000 2.64 2.64 42.83 5.92
502 503 0.441145 CCCAGTACAAACGTAAGCGC 59.559 55.000 0.00 0.00 42.83 5.92
503 504 1.787012 ACCCAGTACAAACGTAAGCG 58.213 50.000 0.00 0.00 45.62 4.68
504 505 5.671742 TTTAACCCAGTACAAACGTAAGC 57.328 39.130 0.00 0.00 45.62 3.09
529 530 8.427012 CGTGTTGTGTACGTATACAAAATAGTT 58.573 33.333 31.25 0.00 42.99 2.24
530 531 7.062138 CCGTGTTGTGTACGTATACAAAATAGT 59.938 37.037 31.25 0.00 42.99 2.12
531 532 7.062138 ACCGTGTTGTGTACGTATACAAAATAG 59.938 37.037 31.25 23.87 42.99 1.73
586 588 5.929697 TTCATTGATCGATTACATCCTGC 57.070 39.130 0.00 0.00 0.00 4.85
592 594 9.435688 AATTATCGGATTCATTGATCGATTACA 57.564 29.630 18.31 0.00 0.00 2.41
685 735 5.434408 AGTACGTATGATCCAGAGTGTGTA 58.566 41.667 0.00 0.00 0.00 2.90
695 745 2.364324 TGGCCTTGAGTACGTATGATCC 59.636 50.000 3.32 0.00 0.00 3.36
741 791 1.040646 TGATTAGCTAGTGCCTCCCG 58.959 55.000 0.00 0.00 40.80 5.14
745 803 4.026744 TCAGACTTGATTAGCTAGTGCCT 58.973 43.478 0.00 0.00 40.80 4.75
791 852 2.492484 GCTAGGATATGATCGAACCGGT 59.508 50.000 0.00 0.00 0.00 5.28
831 892 9.394477 GTTTCAACCTTCAATAACTTCATGTAC 57.606 33.333 0.00 0.00 0.00 2.90
838 899 6.695713 GCGAAAGTTTCAACCTTCAATAACTT 59.304 34.615 15.67 0.00 37.41 2.66
864 925 2.093890 TCGTGCACTTAATAGACGGGA 58.906 47.619 16.19 0.00 0.00 5.14
877 938 3.002451 ACGTCTATGTCTATCTCGTGCAC 59.998 47.826 6.82 6.82 0.00 4.57
879 940 3.546617 CACGTCTATGTCTATCTCGTGC 58.453 50.000 0.00 0.00 39.97 5.34
880 941 3.002348 TGCACGTCTATGTCTATCTCGTG 59.998 47.826 9.81 9.81 46.00 4.35
886 947 3.733443 TGCATGCACGTCTATGTCTAT 57.267 42.857 18.46 0.00 0.00 1.98
887 948 3.383761 CATGCATGCACGTCTATGTCTA 58.616 45.455 25.37 0.00 0.00 2.59
888 949 2.207590 CATGCATGCACGTCTATGTCT 58.792 47.619 25.37 0.00 0.00 3.41
889 950 2.657960 CATGCATGCACGTCTATGTC 57.342 50.000 25.37 4.20 0.00 3.06
915 982 8.838961 GCTAGAATTGACGTATTTATAGACGAC 58.161 37.037 7.34 1.91 41.30 4.34
931 998 6.071728 TGAGATGATATCGCTGCTAGAATTGA 60.072 38.462 0.00 0.00 0.00 2.57
1087 1154 6.272318 TGTTTGACAAACCTTTAGCATCAAG 58.728 36.000 24.58 0.00 40.67 3.02
1113 1180 4.728860 AGAGAGAGAGAGAGAGAGGGAAAT 59.271 45.833 0.00 0.00 0.00 2.17
1116 1183 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
1117 1184 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
1118 1185 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
1205 1598 7.451255 TGTCCATGGAAATGACTTAATTTCTGT 59.549 33.333 18.20 0.00 43.25 3.41
1208 1613 9.956720 CTATGTCCATGGAAATGACTTAATTTC 57.043 33.333 25.50 5.08 43.07 2.17
1220 1625 5.962031 AGGTACTGTACTATGTCCATGGAAA 59.038 40.000 18.20 12.73 37.18 3.13
1386 1791 1.196911 CATACCCTCCACCGTTACCA 58.803 55.000 0.00 0.00 0.00 3.25
1406 1829 2.626683 CCATAGCCTCCCCCATTGTTTT 60.627 50.000 0.00 0.00 0.00 2.43
1441 1864 2.757894 TACCCACCACCATTGTTTGT 57.242 45.000 0.00 0.00 0.00 2.83
1442 1865 2.233431 CCATACCCACCACCATTGTTTG 59.767 50.000 0.00 0.00 0.00 2.93
1474 1954 2.659428 GCCACCATGCCTAGAATTTCT 58.341 47.619 4.03 4.03 0.00 2.52
1522 2002 2.567615 GACCATAACCGCCTCCATATCT 59.432 50.000 0.00 0.00 0.00 1.98
1530 2010 0.469917 CTGGATGACCATAACCGCCT 59.530 55.000 0.00 0.00 45.87 5.52
1577 2057 1.563879 CACCACCATATCCTCCACCAA 59.436 52.381 0.00 0.00 0.00 3.67
1590 2073 2.608059 TATCCACCGCCACCACCA 60.608 61.111 0.00 0.00 0.00 4.17
1615 2098 0.830648 CCACCACCGTATCATCCACT 59.169 55.000 0.00 0.00 0.00 4.00
1621 2104 2.666207 GCCACCACCACCGTATCA 59.334 61.111 0.00 0.00 0.00 2.15
1653 2172 2.695585 GATCCTCCACCATAACCTCCT 58.304 52.381 0.00 0.00 0.00 3.69
1706 2225 7.146715 ACTCATTCATTATGACCTCCTTCAT 57.853 36.000 0.00 0.00 38.35 2.57
1709 2228 7.921041 TCTACTCATTCATTATGACCTCCTT 57.079 36.000 0.00 0.00 38.35 3.36
1711 2230 9.814899 CATATCTACTCATTCATTATGACCTCC 57.185 37.037 0.00 0.00 38.35 4.30
1762 2282 4.329392 TCAAGCACATCACAGATCAACAT 58.671 39.130 0.00 0.00 0.00 2.71
1794 2317 5.928839 CACCTATATGTGAGCATAAGGACAC 59.071 44.000 2.20 0.00 40.55 3.67
1808 2331 9.261180 CGATTTCTCAACATTACACCTATATGT 57.739 33.333 0.00 0.00 36.56 2.29
1889 2412 8.514594 TCTAGAAAGCCAAACACTATCAATTTG 58.485 33.333 0.00 0.00 33.90 2.32
1890 2413 8.635765 TCTAGAAAGCCAAACACTATCAATTT 57.364 30.769 0.00 0.00 0.00 1.82
1910 2433 6.385759 TCATTAGTAACCAAAGCCCATCTAGA 59.614 38.462 0.00 0.00 0.00 2.43
1942 2468 7.786178 TGGTGCACATATTAGTCTGTTAATC 57.214 36.000 20.43 0.00 0.00 1.75
1943 2469 7.829211 ACTTGGTGCACATATTAGTCTGTTAAT 59.171 33.333 20.43 0.00 0.00 1.40
1944 2470 7.119116 CACTTGGTGCACATATTAGTCTGTTAA 59.881 37.037 20.43 0.00 0.00 2.01
1948 2474 4.937620 ACACTTGGTGCACATATTAGTCTG 59.062 41.667 20.43 5.77 36.98 3.51
1990 2516 9.282247 CATCAATGCATGTTCTAAAACTAGTTC 57.718 33.333 8.95 0.00 36.30 3.01
2006 2532 5.596772 TCCAAATCTGATGTCATCAATGCAT 59.403 36.000 16.20 0.00 39.11 3.96
2007 2533 4.951094 TCCAAATCTGATGTCATCAATGCA 59.049 37.500 16.20 0.00 39.11 3.96
2083 2609 5.627735 GCCAGACAAGGAATATTGACTCTGA 60.628 44.000 0.00 0.00 36.28 3.27
2212 2738 4.338964 GGGAAAAGTTTGGTTTACCGAGAA 59.661 41.667 0.00 0.00 39.43 2.87
2229 2755 0.106918 AAGTGTGGTGCTCGGGAAAA 60.107 50.000 0.00 0.00 0.00 2.29
2296 2822 2.682856 TGGCATCGCTGAGTATTTTTCC 59.317 45.455 0.00 0.00 0.00 3.13
2311 2837 3.451141 TTGGTTGAGTGTTTTGGCATC 57.549 42.857 0.00 0.00 0.00 3.91
2339 2866 0.528017 TGTCACTAGCTCTCGGCAAG 59.472 55.000 0.00 0.00 44.79 4.01
2447 2975 7.816995 CCATTTCAATATGTCTTTCCGGAAAAA 59.183 33.333 28.62 15.41 0.00 1.94
2452 2980 6.449635 TTCCATTTCAATATGTCTTTCCGG 57.550 37.500 0.00 0.00 0.00 5.14
2463 2991 4.876107 GGTTCGAGAGCTTCCATTTCAATA 59.124 41.667 0.00 0.00 0.00 1.90
2520 3050 3.377172 GGGAATTCTACAAACATGTCCCG 59.623 47.826 5.23 0.00 34.50 5.14
2524 3054 6.186957 TGCATAGGGAATTCTACAAACATGT 58.813 36.000 5.23 0.00 0.00 3.21
2533 3098 3.388024 AGTCGCTTGCATAGGGAATTCTA 59.612 43.478 14.14 0.00 46.12 2.10
2539 3104 0.461548 CTGAGTCGCTTGCATAGGGA 59.538 55.000 10.21 10.21 42.92 4.20
2543 3108 1.807139 TTTGCTGAGTCGCTTGCATA 58.193 45.000 8.13 0.00 35.27 3.14
2545 3110 1.807139 TATTTGCTGAGTCGCTTGCA 58.193 45.000 8.13 2.95 0.00 4.08
2584 3149 2.867368 TCGTCAAACGTTTGCTGTATGT 59.133 40.909 31.42 0.00 43.14 2.29
2585 3150 3.059868 ACTCGTCAAACGTTTGCTGTATG 60.060 43.478 31.42 20.72 43.14 2.39
2586 3151 3.128349 ACTCGTCAAACGTTTGCTGTAT 58.872 40.909 31.42 16.24 43.14 2.29
2587 3152 2.542597 ACTCGTCAAACGTTTGCTGTA 58.457 42.857 31.42 15.07 43.14 2.74
2589 3154 2.030457 AGAACTCGTCAAACGTTTGCTG 59.970 45.455 31.42 25.04 43.14 4.41
2590 3155 2.277084 AGAACTCGTCAAACGTTTGCT 58.723 42.857 31.42 19.49 43.14 3.91
2591 3156 2.284417 AGAGAACTCGTCAAACGTTTGC 59.716 45.455 31.42 24.57 43.14 3.68
2592 3157 3.550275 TGAGAGAACTCGTCAAACGTTTG 59.450 43.478 30.63 30.63 45.25 2.93
2673 3239 4.812476 CGAGCGCCCCGACATTCA 62.812 66.667 13.63 0.00 0.00 2.57
2684 3250 1.003851 TATAGTTGTTTGCCGAGCGC 58.996 50.000 0.00 0.00 38.31 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.