Multiple sequence alignment - TraesCS7A01G225100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G225100 chr7A 100.000 5551 0 0 1 5551 194326154 194320604 0.000000e+00 10251.0
1 TraesCS7A01G225100 chr7A 78.679 863 161 21 1508 2351 573128270 573127412 2.260000e-153 553.0
2 TraesCS7A01G225100 chr7A 89.538 325 30 4 406 728 701904823 701904501 5.180000e-110 409.0
3 TraesCS7A01G225100 chr7A 79.651 172 28 5 36 201 191729002 191728832 3.510000e-22 117.0
4 TraesCS7A01G225100 chr7A 78.947 114 16 7 5380 5488 172974720 172974830 2.770000e-08 71.3
5 TraesCS7A01G225100 chr7A 100.000 32 0 0 734 765 194325329 194325298 6.010000e-05 60.2
6 TraesCS7A01G225100 chr7A 100.000 32 0 0 826 857 194325421 194325390 6.010000e-05 60.2
7 TraesCS7A01G225100 chr7D 95.981 1717 46 5 780 2476 189429494 189431207 0.000000e+00 2767.0
8 TraesCS7A01G225100 chr7D 93.447 1114 47 11 2514 3623 189431214 189432305 0.000000e+00 1629.0
9 TraesCS7A01G225100 chr7D 93.359 768 32 8 3659 4426 189432306 189433054 0.000000e+00 1118.0
10 TraesCS7A01G225100 chr7D 93.151 438 22 5 4422 4853 189435816 189436251 2.180000e-178 636.0
11 TraesCS7A01G225100 chr7D 84.472 644 55 31 4939 5550 189436373 189437003 1.330000e-165 593.0
12 TraesCS7A01G225100 chr7D 77.921 856 174 15 1508 2351 505616503 505615651 2.290000e-143 520.0
13 TraesCS7A01G225100 chr7D 90.458 262 20 2 1 257 189429084 189429345 1.920000e-89 340.0
14 TraesCS7A01G225100 chr7B 95.491 1730 34 13 780 2476 334321485 334323203 0.000000e+00 2723.0
15 TraesCS7A01G225100 chr7B 91.934 1277 54 19 3659 4913 334324248 334325497 0.000000e+00 1742.0
16 TraesCS7A01G225100 chr7B 92.898 521 18 9 2514 3028 334323210 334323717 0.000000e+00 739.0
17 TraesCS7A01G225100 chr7B 78.271 856 171 15 1508 2351 533614607 533613755 2.280000e-148 536.0
18 TraesCS7A01G225100 chr7B 86.732 407 41 9 3198 3599 365276385 365276783 1.840000e-119 440.0
19 TraesCS7A01G225100 chr7B 87.770 278 30 4 3348 3623 334323972 334324247 6.940000e-84 322.0
20 TraesCS7A01G225100 chr7B 88.261 230 11 5 2803 3027 365276141 365276359 1.530000e-65 261.0
21 TraesCS7A01G225100 chr7B 91.391 151 12 1 3198 3347 334323742 334323892 7.290000e-49 206.0
22 TraesCS7A01G225100 chr6D 86.297 883 115 6 1507 2388 363597029 363596152 0.000000e+00 955.0
23 TraesCS7A01G225100 chr6D 89.164 323 35 0 406 728 276120255 276120577 2.410000e-108 403.0
24 TraesCS7A01G225100 chr6D 89.130 322 35 0 407 728 428190806 428191127 8.660000e-108 401.0
25 TraesCS7A01G225100 chr6D 77.231 325 58 16 5148 5462 62148135 62147817 5.720000e-40 176.0
26 TraesCS7A01G225100 chr6D 80.982 163 22 8 42 197 328770983 328770823 2.720000e-23 121.0
27 TraesCS7A01G225100 chr6D 100.000 40 0 0 2474 2513 429468412 429468451 2.140000e-09 75.0
28 TraesCS7A01G225100 chr6A 86.007 879 118 5 1507 2384 504624712 504623838 0.000000e+00 937.0
29 TraesCS7A01G225100 chr6A 89.297 327 34 1 406 731 595449640 595449966 5.180000e-110 409.0
30 TraesCS7A01G225100 chr6B 85.277 883 124 6 1507 2388 548384261 548383384 0.000000e+00 905.0
31 TraesCS7A01G225100 chr3B 87.192 406 41 7 3198 3599 824084587 824084985 8.480000e-123 451.0
32 TraesCS7A01G225100 chr3B 88.745 231 10 4 2803 3028 824084343 824084562 9.170000e-68 268.0
33 TraesCS7A01G225100 chr3B 100.000 41 0 0 2474 2514 532665628 532665588 5.960000e-10 76.8
34 TraesCS7A01G225100 chr1D 89.198 324 35 0 405 728 337905277 337905600 6.700000e-109 405.0
35 TraesCS7A01G225100 chr1D 87.906 339 39 2 393 731 237801346 237801682 1.120000e-106 398.0
36 TraesCS7A01G225100 chr1D 100.000 42 0 0 2474 2515 66242542 66242583 1.660000e-10 78.7
37 TraesCS7A01G225100 chr4A 87.714 350 36 2 387 736 511827403 511827745 8.660000e-108 401.0
38 TraesCS7A01G225100 chr4A 87.143 350 38 3 387 729 552824313 552824662 1.870000e-104 390.0
39 TraesCS7A01G225100 chr4A 81.928 83 8 6 5385 5464 60185624 60185546 4.640000e-06 63.9
40 TraesCS7A01G225100 chr3D 89.610 308 32 0 421 728 289991009 289990702 5.210000e-105 392.0
41 TraesCS7A01G225100 chr3D 76.344 279 47 19 5228 5496 576580184 576579915 1.250000e-26 132.0
42 TraesCS7A01G225100 chr3D 76.442 208 36 11 5322 5520 329705202 329705405 3.540000e-17 100.0
43 TraesCS7A01G225100 chr3D 100.000 41 0 0 2474 2514 432025697 432025657 5.960000e-10 76.8
44 TraesCS7A01G225100 chrUn 78.648 281 45 14 5149 5422 83801900 83801628 7.390000e-39 172.0
45 TraesCS7A01G225100 chrUn 78.648 281 45 14 5149 5422 83849192 83848920 7.390000e-39 172.0
46 TraesCS7A01G225100 chrUn 78.648 281 45 14 5149 5422 281117133 281117405 7.390000e-39 172.0
47 TraesCS7A01G225100 chrUn 78.723 282 43 15 5149 5422 367125199 367124927 7.390000e-39 172.0
48 TraesCS7A01G225100 chrUn 78.648 281 45 14 5149 5422 367321187 367320915 7.390000e-39 172.0
49 TraesCS7A01G225100 chrUn 80.667 150 24 3 43 187 47732574 47732425 1.630000e-20 111.0
50 TraesCS7A01G225100 chr3A 76.947 321 55 19 5150 5462 208723457 208723148 1.240000e-36 165.0
51 TraesCS7A01G225100 chr3A 100.000 40 0 0 2474 2513 672868090 672868129 2.140000e-09 75.0
52 TraesCS7A01G225100 chr1B 82.803 157 19 4 48 198 662463962 662463808 3.490000e-27 134.0
53 TraesCS7A01G225100 chr4D 89.423 104 11 0 36 139 65583506 65583403 1.250000e-26 132.0
54 TraesCS7A01G225100 chr4D 100.000 43 0 0 2474 2516 365184004 365183962 4.610000e-11 80.5
55 TraesCS7A01G225100 chr4B 82.166 157 24 3 34 187 96277584 96277429 1.250000e-26 132.0
56 TraesCS7A01G225100 chr4B 100.000 42 0 0 2474 2515 48101575 48101534 1.660000e-10 78.7
57 TraesCS7A01G225100 chr2A 79.762 168 28 4 37 198 750382150 750382317 3.510000e-22 117.0
58 TraesCS7A01G225100 chr5A 80.255 157 27 3 34 187 617172947 617172792 1.260000e-21 115.0
59 TraesCS7A01G225100 chr2D 97.778 45 1 0 2474 2518 618082812 618082768 1.660000e-10 78.7
60 TraesCS7A01G225100 chr2D 100.000 40 0 0 2474 2513 21932647 21932608 2.140000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G225100 chr7A 194320604 194326154 5550 True 3457.133333 10251 100.000000 1 5551 3 chr7A.!!$R4 5550
1 TraesCS7A01G225100 chr7A 573127412 573128270 858 True 553.000000 553 78.679000 1508 2351 1 chr7A.!!$R2 843
2 TraesCS7A01G225100 chr7D 189429084 189437003 7919 False 1180.500000 2767 91.811333 1 5550 6 chr7D.!!$F1 5549
3 TraesCS7A01G225100 chr7D 505615651 505616503 852 True 520.000000 520 77.921000 1508 2351 1 chr7D.!!$R1 843
4 TraesCS7A01G225100 chr7B 334321485 334325497 4012 False 1146.400000 2723 91.896800 780 4913 5 chr7B.!!$F1 4133
5 TraesCS7A01G225100 chr7B 533613755 533614607 852 True 536.000000 536 78.271000 1508 2351 1 chr7B.!!$R1 843
6 TraesCS7A01G225100 chr7B 365276141 365276783 642 False 350.500000 440 87.496500 2803 3599 2 chr7B.!!$F2 796
7 TraesCS7A01G225100 chr6D 363596152 363597029 877 True 955.000000 955 86.297000 1507 2388 1 chr6D.!!$R3 881
8 TraesCS7A01G225100 chr6A 504623838 504624712 874 True 937.000000 937 86.007000 1507 2384 1 chr6A.!!$R1 877
9 TraesCS7A01G225100 chr6B 548383384 548384261 877 True 905.000000 905 85.277000 1507 2388 1 chr6B.!!$R1 881
10 TraesCS7A01G225100 chr3B 824084343 824084985 642 False 359.500000 451 87.968500 2803 3599 2 chr3B.!!$F1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 503 0.037160 GACTTGGGTCGGGCCTTAAA 59.963 55.0 0.84 0.00 37.43 1.52 F
731 799 0.105778 GAGATGGCCAGGACTAGTGC 59.894 60.0 13.05 6.22 0.00 4.40 F
764 832 0.106419 ACGAAGCCCCAAAGTCCAAA 60.106 50.0 0.00 0.00 0.00 3.28 F
955 1023 0.107831 CCCCAATTCTTCCGCCGATA 59.892 55.0 0.00 0.00 0.00 2.92 F
2511 2633 0.318441 ATCGTGTGTGTAGCAGTGCT 59.682 50.0 23.44 23.44 43.41 4.40 F
2512 2634 0.318699 TCGTGTGTGTAGCAGTGCTC 60.319 55.0 23.64 13.85 40.44 4.26 F
4204 4423 0.324091 ATGTCCGAGGAGGTACCGTT 60.324 55.0 6.18 0.00 44.74 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2412 2527 1.585297 AAACAATTGCAGCAACAGGC 58.415 45.000 10.85 0.0 45.30 4.85 R
2510 2632 0.107703 TTGCCCCGATTGCAGTAGAG 60.108 55.000 0.00 0.0 40.35 2.43 R
2511 2633 0.107703 CTTGCCCCGATTGCAGTAGA 60.108 55.000 0.00 0.0 40.35 2.59 R
2867 2990 0.965439 CCCCCGAAACAAAAGATGCA 59.035 50.000 0.00 0.0 0.00 3.96 R
3929 4148 0.038744 CCCACTGCCTGAAGACCAAT 59.961 55.000 0.00 0.0 0.00 3.16 R
4333 4553 0.623617 ATGGAGACCAAGGTACCCCC 60.624 60.000 8.74 0.0 36.95 5.40 R
5061 8151 3.601443 ACTTCATCGAACCAGGAAGAG 57.399 47.619 16.03 0.0 39.20 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.580691 GGTCGAATGTGAGTTGATTATGACA 59.419 40.000 0.00 0.00 0.00 3.58
27 28 6.258727 GGTCGAATGTGAGTTGATTATGACAT 59.741 38.462 0.00 0.00 0.00 3.06
32 33 6.726258 TGTGAGTTGATTATGACATGACAC 57.274 37.500 0.00 0.00 0.00 3.67
76 77 2.645838 AAGGCATTGCTCGGATATGT 57.354 45.000 8.82 0.00 0.00 2.29
78 79 2.498167 AGGCATTGCTCGGATATGTTC 58.502 47.619 8.82 0.00 0.00 3.18
88 89 3.724374 TCGGATATGTTCGGAATGGTTC 58.276 45.455 0.00 0.00 31.37 3.62
138 139 0.253044 ATGGTTGGATCTGGTGACGG 59.747 55.000 0.00 0.00 38.41 4.79
152 158 2.202623 ACGGAATCAGCGTCGCTC 60.203 61.111 18.76 6.18 36.40 5.03
154 160 2.586357 GGAATCAGCGTCGCTCCC 60.586 66.667 18.76 12.29 36.40 4.30
158 164 0.321653 AATCAGCGTCGCTCCCTTTT 60.322 50.000 18.76 3.90 36.40 2.27
175 181 3.061965 CCTTTTTGAAGGCGTTGTTGTTG 59.938 43.478 0.00 0.00 32.43 3.33
178 184 3.577649 TTGAAGGCGTTGTTGTTGAAA 57.422 38.095 0.00 0.00 0.00 2.69
192 198 1.784283 GTTGAAAAACATCGTTGCCCG 59.216 47.619 0.00 0.00 38.13 6.13
217 223 1.078426 GTTGCGGAGGGTGTATGCT 60.078 57.895 0.00 0.00 0.00 3.79
224 230 3.431207 GCGGAGGGTGTATGCTTTTAGTA 60.431 47.826 0.00 0.00 0.00 1.82
226 232 5.510179 GCGGAGGGTGTATGCTTTTAGTATA 60.510 44.000 0.00 0.00 0.00 1.47
264 330 7.201617 GCTTTATGCTCCATTTTAAGTACGTCT 60.202 37.037 0.00 0.00 38.95 4.18
284 350 8.891671 ACGTCTTAACCTTCACACTTATTTTA 57.108 30.769 0.00 0.00 0.00 1.52
350 418 8.926715 AAAACTCCTCACTATTTTGTTTTGTC 57.073 30.769 0.00 0.00 35.65 3.18
351 419 7.881775 AACTCCTCACTATTTTGTTTTGTCT 57.118 32.000 0.00 0.00 0.00 3.41
352 420 7.264373 ACTCCTCACTATTTTGTTTTGTCTG 57.736 36.000 0.00 0.00 0.00 3.51
353 421 6.828785 ACTCCTCACTATTTTGTTTTGTCTGT 59.171 34.615 0.00 0.00 0.00 3.41
354 422 7.990886 ACTCCTCACTATTTTGTTTTGTCTGTA 59.009 33.333 0.00 0.00 0.00 2.74
355 423 8.378172 TCCTCACTATTTTGTTTTGTCTGTAG 57.622 34.615 0.00 0.00 0.00 2.74
356 424 8.208224 TCCTCACTATTTTGTTTTGTCTGTAGA 58.792 33.333 0.00 0.00 0.00 2.59
357 425 8.836413 CCTCACTATTTTGTTTTGTCTGTAGAA 58.164 33.333 0.00 0.00 0.00 2.10
358 426 9.651718 CTCACTATTTTGTTTTGTCTGTAGAAC 57.348 33.333 0.00 0.00 0.00 3.01
359 427 8.617809 TCACTATTTTGTTTTGTCTGTAGAACC 58.382 33.333 0.00 0.00 0.00 3.62
360 428 7.860872 CACTATTTTGTTTTGTCTGTAGAACCC 59.139 37.037 0.00 0.00 0.00 4.11
361 429 7.778382 ACTATTTTGTTTTGTCTGTAGAACCCT 59.222 33.333 0.00 0.00 0.00 4.34
362 430 9.280174 CTATTTTGTTTTGTCTGTAGAACCCTA 57.720 33.333 0.00 0.00 0.00 3.53
363 431 6.930667 TTTGTTTTGTCTGTAGAACCCTAC 57.069 37.500 0.00 0.00 44.26 3.18
371 439 2.398252 GTAGAACCCTACAAGGCCAC 57.602 55.000 5.01 0.00 43.63 5.01
372 440 1.626825 GTAGAACCCTACAAGGCCACA 59.373 52.381 5.01 0.00 43.63 4.17
373 441 0.400594 AGAACCCTACAAGGCCACAC 59.599 55.000 5.01 0.00 32.73 3.82
374 442 0.109723 GAACCCTACAAGGCCACACA 59.890 55.000 5.01 0.00 32.73 3.72
375 443 0.179001 AACCCTACAAGGCCACACAC 60.179 55.000 5.01 0.00 32.73 3.82
376 444 1.303317 CCCTACAAGGCCACACACC 60.303 63.158 5.01 0.00 32.73 4.16
377 445 1.671054 CCTACAAGGCCACACACCG 60.671 63.158 5.01 0.00 0.00 4.94
378 446 1.671054 CTACAAGGCCACACACCGG 60.671 63.158 5.01 0.00 0.00 5.28
384 452 2.742372 GCCACACACCGGCTACAG 60.742 66.667 0.00 0.00 46.56 2.74
385 453 2.741092 CCACACACCGGCTACAGT 59.259 61.111 0.00 0.00 0.00 3.55
386 454 1.667830 CCACACACCGGCTACAGTG 60.668 63.158 0.00 5.67 39.93 3.66
387 455 2.030562 ACACACCGGCTACAGTGC 59.969 61.111 0.00 0.00 37.51 4.40
398 466 3.821421 GCTACAGTGCCAGTTATACCT 57.179 47.619 0.00 0.00 0.00 3.08
399 467 3.458189 GCTACAGTGCCAGTTATACCTG 58.542 50.000 0.00 0.00 0.00 4.00
406 474 2.276732 CCAGTTATACCTGGCCATGG 57.723 55.000 5.51 13.05 45.19 3.66
407 475 1.202927 CCAGTTATACCTGGCCATGGG 60.203 57.143 20.97 16.10 45.19 4.00
432 500 3.647771 GGACTTGGGTCGGGCCTT 61.648 66.667 0.84 0.00 42.97 4.35
433 501 2.295602 GGACTTGGGTCGGGCCTTA 61.296 63.158 0.84 0.00 42.97 2.69
434 502 1.681076 GACTTGGGTCGGGCCTTAA 59.319 57.895 0.84 0.00 37.43 1.85
435 503 0.037160 GACTTGGGTCGGGCCTTAAA 59.963 55.000 0.84 0.00 37.43 1.52
436 504 0.479378 ACTTGGGTCGGGCCTTAAAA 59.521 50.000 0.84 0.00 37.43 1.52
437 505 1.133419 ACTTGGGTCGGGCCTTAAAAA 60.133 47.619 0.84 0.00 37.43 1.94
438 506 1.544246 CTTGGGTCGGGCCTTAAAAAG 59.456 52.381 0.84 0.00 37.43 2.27
439 507 0.896479 TGGGTCGGGCCTTAAAAAGC 60.896 55.000 0.84 0.00 37.43 3.51
445 513 1.589630 GGCCTTAAAAAGCCCACGG 59.410 57.895 0.00 0.00 43.76 4.94
458 526 1.165270 CCCACGGCAGAAAACTAAGG 58.835 55.000 0.00 0.00 0.00 2.69
459 527 0.521735 CCACGGCAGAAAACTAAGGC 59.478 55.000 0.00 0.00 0.00 4.35
460 528 0.521735 CACGGCAGAAAACTAAGGCC 59.478 55.000 0.00 0.00 41.20 5.19
461 529 0.400594 ACGGCAGAAAACTAAGGCCT 59.599 50.000 0.00 0.00 42.43 5.19
462 530 1.626825 ACGGCAGAAAACTAAGGCCTA 59.373 47.619 5.16 0.00 42.43 3.93
463 531 2.280628 CGGCAGAAAACTAAGGCCTAG 58.719 52.381 5.16 6.69 42.43 3.02
464 532 2.644676 GGCAGAAAACTAAGGCCTAGG 58.355 52.381 5.16 3.67 41.39 3.02
465 533 2.017782 GCAGAAAACTAAGGCCTAGGC 58.982 52.381 26.55 26.55 41.06 3.93
475 543 3.060866 GCCTAGGCCCTACCATCG 58.939 66.667 24.19 0.00 43.14 3.84
476 544 2.584391 GCCTAGGCCCTACCATCGG 61.584 68.421 24.19 0.00 43.14 4.18
477 545 1.913762 CCTAGGCCCTACCATCGGG 60.914 68.421 0.00 0.00 44.89 5.14
482 550 4.561155 CCCTACCATCGGGCCTAT 57.439 61.111 0.84 0.00 37.90 2.57
483 551 2.773458 CCCTACCATCGGGCCTATT 58.227 57.895 0.84 0.00 37.90 1.73
484 552 1.064825 CCCTACCATCGGGCCTATTT 58.935 55.000 0.84 0.00 37.90 1.40
485 553 1.423921 CCCTACCATCGGGCCTATTTT 59.576 52.381 0.84 0.00 37.90 1.82
486 554 2.158519 CCCTACCATCGGGCCTATTTTT 60.159 50.000 0.84 0.00 37.90 1.94
504 572 2.003937 TTTAAACCCAACTCTGGCCC 57.996 50.000 0.00 0.00 41.99 5.80
505 573 0.854218 TTAAACCCAACTCTGGCCCA 59.146 50.000 0.00 0.00 41.99 5.36
506 574 1.080638 TAAACCCAACTCTGGCCCAT 58.919 50.000 0.00 0.00 41.99 4.00
507 575 0.251787 AAACCCAACTCTGGCCCATC 60.252 55.000 0.00 0.00 41.99 3.51
508 576 1.142688 AACCCAACTCTGGCCCATCT 61.143 55.000 0.00 0.00 41.99 2.90
509 577 1.225704 CCCAACTCTGGCCCATCTC 59.774 63.158 0.00 0.00 41.99 2.75
510 578 1.153289 CCAACTCTGGCCCATCTCG 60.153 63.158 0.00 0.00 35.39 4.04
511 579 1.599047 CAACTCTGGCCCATCTCGT 59.401 57.895 0.00 0.00 0.00 4.18
512 580 0.824109 CAACTCTGGCCCATCTCGTA 59.176 55.000 0.00 0.00 0.00 3.43
513 581 1.207089 CAACTCTGGCCCATCTCGTAA 59.793 52.381 0.00 0.00 0.00 3.18
514 582 1.568504 ACTCTGGCCCATCTCGTAAA 58.431 50.000 0.00 0.00 0.00 2.01
515 583 1.906574 ACTCTGGCCCATCTCGTAAAA 59.093 47.619 0.00 0.00 0.00 1.52
516 584 2.304761 ACTCTGGCCCATCTCGTAAAAA 59.695 45.455 0.00 0.00 0.00 1.94
517 585 2.939103 CTCTGGCCCATCTCGTAAAAAG 59.061 50.000 0.00 0.00 0.00 2.27
518 586 1.401905 CTGGCCCATCTCGTAAAAAGC 59.598 52.381 0.00 0.00 0.00 3.51
519 587 0.738975 GGCCCATCTCGTAAAAAGCC 59.261 55.000 0.00 0.00 0.00 4.35
520 588 0.738975 GCCCATCTCGTAAAAAGCCC 59.261 55.000 0.00 0.00 0.00 5.19
521 589 1.682087 GCCCATCTCGTAAAAAGCCCT 60.682 52.381 0.00 0.00 0.00 5.19
522 590 2.017049 CCCATCTCGTAAAAAGCCCTG 58.983 52.381 0.00 0.00 0.00 4.45
523 591 2.355716 CCCATCTCGTAAAAAGCCCTGA 60.356 50.000 0.00 0.00 0.00 3.86
524 592 3.343617 CCATCTCGTAAAAAGCCCTGAA 58.656 45.455 0.00 0.00 0.00 3.02
525 593 3.756434 CCATCTCGTAAAAAGCCCTGAAA 59.244 43.478 0.00 0.00 0.00 2.69
526 594 4.217550 CCATCTCGTAAAAAGCCCTGAAAA 59.782 41.667 0.00 0.00 0.00 2.29
527 595 5.393962 CATCTCGTAAAAAGCCCTGAAAAG 58.606 41.667 0.00 0.00 0.00 2.27
528 596 3.252458 TCTCGTAAAAAGCCCTGAAAAGC 59.748 43.478 0.00 0.00 0.00 3.51
529 597 3.219281 TCGTAAAAAGCCCTGAAAAGCT 58.781 40.909 0.00 0.00 42.40 3.74
530 598 3.252458 TCGTAAAAAGCCCTGAAAAGCTC 59.748 43.478 0.00 0.00 38.74 4.09
531 599 3.253432 CGTAAAAAGCCCTGAAAAGCTCT 59.747 43.478 0.00 0.00 38.74 4.09
532 600 4.261614 CGTAAAAAGCCCTGAAAAGCTCTT 60.262 41.667 0.00 0.00 38.74 2.85
533 601 5.048991 CGTAAAAAGCCCTGAAAAGCTCTTA 60.049 40.000 0.00 0.00 38.74 2.10
534 602 5.459536 AAAAAGCCCTGAAAAGCTCTTAG 57.540 39.130 0.00 0.00 38.74 2.18
535 603 2.121291 AGCCCTGAAAAGCTCTTAGC 57.879 50.000 0.00 0.00 42.84 3.09
544 612 4.035435 GCTCTTAGCGCTTAGGGC 57.965 61.111 30.09 30.09 41.91 5.19
545 613 1.595655 GCTCTTAGCGCTTAGGGCC 60.596 63.158 32.68 17.44 42.59 5.80
546 614 1.300233 CTCTTAGCGCTTAGGGCCG 60.300 63.158 22.14 7.03 42.59 6.13
547 615 2.017559 CTCTTAGCGCTTAGGGCCGT 62.018 60.000 22.14 2.24 42.59 5.68
548 616 1.883084 CTTAGCGCTTAGGGCCGTG 60.883 63.158 18.68 4.34 42.59 4.94
549 617 3.379865 TTAGCGCTTAGGGCCGTGG 62.380 63.158 18.68 1.94 42.59 4.94
566 634 3.630289 GGCCGAGCCTCTTCCTTA 58.370 61.111 7.58 0.00 46.69 2.69
567 635 1.905512 GGCCGAGCCTCTTCCTTAA 59.094 57.895 7.58 0.00 46.69 1.85
568 636 0.252197 GGCCGAGCCTCTTCCTTAAA 59.748 55.000 7.58 0.00 46.69 1.52
569 637 1.339727 GGCCGAGCCTCTTCCTTAAAA 60.340 52.381 7.58 0.00 46.69 1.52
570 638 2.644676 GCCGAGCCTCTTCCTTAAAAT 58.355 47.619 0.00 0.00 0.00 1.82
571 639 2.356069 GCCGAGCCTCTTCCTTAAAATG 59.644 50.000 0.00 0.00 0.00 2.32
572 640 2.356069 CCGAGCCTCTTCCTTAAAATGC 59.644 50.000 0.00 0.00 0.00 3.56
573 641 3.274288 CGAGCCTCTTCCTTAAAATGCT 58.726 45.455 0.00 0.00 0.00 3.79
574 642 4.442706 CGAGCCTCTTCCTTAAAATGCTA 58.557 43.478 0.00 0.00 0.00 3.49
575 643 4.876107 CGAGCCTCTTCCTTAAAATGCTAA 59.124 41.667 0.00 0.00 0.00 3.09
576 644 5.529060 CGAGCCTCTTCCTTAAAATGCTAAT 59.471 40.000 0.00 0.00 0.00 1.73
577 645 6.706270 CGAGCCTCTTCCTTAAAATGCTAATA 59.294 38.462 0.00 0.00 0.00 0.98
578 646 7.389053 CGAGCCTCTTCCTTAAAATGCTAATAT 59.611 37.037 0.00 0.00 0.00 1.28
579 647 8.401490 AGCCTCTTCCTTAAAATGCTAATATG 57.599 34.615 0.00 0.00 0.00 1.78
580 648 7.449704 AGCCTCTTCCTTAAAATGCTAATATGG 59.550 37.037 0.00 0.00 0.00 2.74
581 649 7.597386 CCTCTTCCTTAAAATGCTAATATGGC 58.403 38.462 0.00 0.00 0.00 4.40
582 650 7.231317 CCTCTTCCTTAAAATGCTAATATGGCA 59.769 37.037 6.16 6.16 44.05 4.92
583 651 8.532186 TCTTCCTTAAAATGCTAATATGGCAA 57.468 30.769 7.54 0.00 43.14 4.52
584 652 8.632679 TCTTCCTTAAAATGCTAATATGGCAAG 58.367 33.333 7.54 1.68 43.14 4.01
585 653 6.748132 TCCTTAAAATGCTAATATGGCAAGC 58.252 36.000 7.54 1.96 43.14 4.01
586 654 5.928264 CCTTAAAATGCTAATATGGCAAGCC 59.072 40.000 3.61 3.61 43.14 4.35
587 655 4.341366 AAAATGCTAATATGGCAAGCCC 57.659 40.909 8.89 0.00 43.14 5.19
595 663 3.978193 TGGCAAGCCCAATCCCGT 61.978 61.111 8.89 0.00 41.82 5.28
596 664 3.140814 GGCAAGCCCAATCCCGTC 61.141 66.667 0.00 0.00 0.00 4.79
597 665 3.140814 GCAAGCCCAATCCCGTCC 61.141 66.667 0.00 0.00 0.00 4.79
598 666 2.354729 CAAGCCCAATCCCGTCCA 59.645 61.111 0.00 0.00 0.00 4.02
599 667 1.750399 CAAGCCCAATCCCGTCCAG 60.750 63.158 0.00 0.00 0.00 3.86
600 668 2.983879 AAGCCCAATCCCGTCCAGG 61.984 63.158 0.00 0.00 40.63 4.45
602 670 4.506255 CCCAATCCCGTCCAGGCC 62.506 72.222 0.00 0.00 39.21 5.19
603 671 4.506255 CCAATCCCGTCCAGGCCC 62.506 72.222 0.00 0.00 39.21 5.80
604 672 3.411517 CAATCCCGTCCAGGCCCT 61.412 66.667 0.00 0.00 39.21 5.19
605 673 3.411517 AATCCCGTCCAGGCCCTG 61.412 66.667 2.91 2.91 39.21 4.45
624 692 3.248043 CCGATGGGCTCAAAACTCA 57.752 52.632 0.00 0.00 0.00 3.41
625 693 1.089920 CCGATGGGCTCAAAACTCAG 58.910 55.000 0.00 0.00 0.00 3.35
626 694 1.611673 CCGATGGGCTCAAAACTCAGT 60.612 52.381 0.00 0.00 0.00 3.41
627 695 1.734465 CGATGGGCTCAAAACTCAGTC 59.266 52.381 0.00 0.00 0.00 3.51
628 696 2.087646 GATGGGCTCAAAACTCAGTCC 58.912 52.381 0.00 0.00 34.68 3.85
629 697 0.110486 TGGGCTCAAAACTCAGTCCC 59.890 55.000 0.00 0.00 32.93 4.46
630 698 0.110486 GGGCTCAAAACTCAGTCCCA 59.890 55.000 0.00 0.00 32.68 4.37
631 699 1.478654 GGGCTCAAAACTCAGTCCCAA 60.479 52.381 0.00 0.00 32.68 4.12
632 700 1.882623 GGCTCAAAACTCAGTCCCAAG 59.117 52.381 0.00 0.00 0.00 3.61
633 701 1.268079 GCTCAAAACTCAGTCCCAAGC 59.732 52.381 0.00 0.00 0.00 4.01
634 702 1.882623 CTCAAAACTCAGTCCCAAGCC 59.117 52.381 0.00 0.00 0.00 4.35
635 703 0.961753 CAAAACTCAGTCCCAAGCCC 59.038 55.000 0.00 0.00 0.00 5.19
636 704 0.555769 AAAACTCAGTCCCAAGCCCA 59.444 50.000 0.00 0.00 0.00 5.36
637 705 0.111253 AAACTCAGTCCCAAGCCCAG 59.889 55.000 0.00 0.00 0.00 4.45
638 706 2.045536 CTCAGTCCCAAGCCCAGC 60.046 66.667 0.00 0.00 0.00 4.85
639 707 3.635268 CTCAGTCCCAAGCCCAGCC 62.635 68.421 0.00 0.00 0.00 4.85
640 708 4.748144 CAGTCCCAAGCCCAGCCC 62.748 72.222 0.00 0.00 0.00 5.19
642 710 4.066139 GTCCCAAGCCCAGCCCAT 62.066 66.667 0.00 0.00 0.00 4.00
643 711 4.064768 TCCCAAGCCCAGCCCATG 62.065 66.667 0.00 0.00 0.00 3.66
644 712 4.064768 CCCAAGCCCAGCCCATGA 62.065 66.667 0.00 0.00 0.00 3.07
645 713 2.441532 CCAAGCCCAGCCCATGAG 60.442 66.667 0.00 0.00 0.00 2.90
646 714 3.145551 CAAGCCCAGCCCATGAGC 61.146 66.667 0.00 0.00 0.00 4.26
647 715 3.664888 AAGCCCAGCCCATGAGCA 61.665 61.111 0.76 0.00 34.23 4.26
648 716 3.228243 AAGCCCAGCCCATGAGCAA 62.228 57.895 0.76 0.00 34.23 3.91
649 717 3.145551 GCCCAGCCCATGAGCAAG 61.146 66.667 0.76 0.00 34.23 4.01
650 718 2.357836 CCCAGCCCATGAGCAAGT 59.642 61.111 0.76 0.00 34.23 3.16
651 719 1.751927 CCCAGCCCATGAGCAAGTC 60.752 63.158 0.76 0.00 34.23 3.01
652 720 1.751927 CCAGCCCATGAGCAAGTCC 60.752 63.158 0.76 0.00 34.23 3.85
653 721 1.001764 CAGCCCATGAGCAAGTCCA 60.002 57.895 0.76 0.00 34.23 4.02
654 722 0.395311 CAGCCCATGAGCAAGTCCAT 60.395 55.000 0.76 0.00 34.23 3.41
655 723 0.333993 AGCCCATGAGCAAGTCCATT 59.666 50.000 0.76 0.00 34.23 3.16
656 724 0.458669 GCCCATGAGCAAGTCCATTG 59.541 55.000 0.00 0.00 42.20 2.82
657 725 1.108776 CCCATGAGCAAGTCCATTGG 58.891 55.000 0.00 0.00 39.47 3.16
658 726 1.108776 CCATGAGCAAGTCCATTGGG 58.891 55.000 2.09 0.00 39.47 4.12
659 727 0.458669 CATGAGCAAGTCCATTGGGC 59.541 55.000 0.00 0.00 39.47 5.36
660 728 0.685458 ATGAGCAAGTCCATTGGGCC 60.685 55.000 3.00 0.00 39.47 5.80
661 729 1.000396 GAGCAAGTCCATTGGGCCT 60.000 57.895 4.53 0.00 39.47 5.19
662 730 0.255890 GAGCAAGTCCATTGGGCCTA 59.744 55.000 4.53 0.00 39.47 3.93
663 731 0.257039 AGCAAGTCCATTGGGCCTAG 59.743 55.000 4.53 0.00 39.47 3.02
664 732 0.753111 GCAAGTCCATTGGGCCTAGG 60.753 60.000 3.67 3.67 39.47 3.02
665 733 0.753111 CAAGTCCATTGGGCCTAGGC 60.753 60.000 26.55 26.55 41.06 3.93
679 747 4.009370 GCCTAGGCCCTAGATTTTAGTG 57.991 50.000 24.19 0.80 36.26 2.74
680 748 3.807561 GCCTAGGCCCTAGATTTTAGTGC 60.808 52.174 24.19 7.44 36.26 4.40
681 749 3.244596 CCTAGGCCCTAGATTTTAGTGCC 60.245 52.174 19.72 0.16 38.19 5.01
682 750 1.141053 AGGCCCTAGATTTTAGTGCCG 59.859 52.381 0.00 0.00 41.91 5.69
683 751 1.594331 GCCCTAGATTTTAGTGCCGG 58.406 55.000 0.00 0.00 0.00 6.13
684 752 1.814248 GCCCTAGATTTTAGTGCCGGG 60.814 57.143 2.18 0.00 0.00 5.73
685 753 1.594331 CCTAGATTTTAGTGCCGGGC 58.406 55.000 13.32 13.32 0.00 6.13
686 754 1.594331 CTAGATTTTAGTGCCGGGCC 58.406 55.000 17.97 8.02 0.00 5.80
687 755 1.141053 CTAGATTTTAGTGCCGGGCCT 59.859 52.381 17.97 15.25 0.00 5.19
688 756 0.394352 AGATTTTAGTGCCGGGCCTG 60.394 55.000 17.97 3.88 0.00 4.85
689 757 1.379843 ATTTTAGTGCCGGGCCTGG 60.380 57.895 27.88 27.88 0.00 4.45
690 758 2.854300 ATTTTAGTGCCGGGCCTGGG 62.854 60.000 32.27 20.14 0.00 4.45
726 794 2.765807 CCGGAGATGGCCAGGACT 60.766 66.667 13.05 10.74 0.00 3.85
727 795 1.457643 CCGGAGATGGCCAGGACTA 60.458 63.158 13.05 0.00 0.00 2.59
728 796 1.467678 CCGGAGATGGCCAGGACTAG 61.468 65.000 13.05 8.19 0.00 2.57
729 797 0.757188 CGGAGATGGCCAGGACTAGT 60.757 60.000 13.05 0.00 0.00 2.57
730 798 0.755686 GGAGATGGCCAGGACTAGTG 59.244 60.000 13.05 0.00 0.00 2.74
731 799 0.105778 GAGATGGCCAGGACTAGTGC 59.894 60.000 13.05 6.22 0.00 4.40
732 800 1.227380 GATGGCCAGGACTAGTGCG 60.227 63.158 13.05 4.17 0.00 5.34
733 801 1.676678 GATGGCCAGGACTAGTGCGA 61.677 60.000 13.05 0.00 0.00 5.10
734 802 1.680522 ATGGCCAGGACTAGTGCGAG 61.681 60.000 13.05 5.59 0.00 5.03
735 803 2.352032 GGCCAGGACTAGTGCGAGT 61.352 63.158 8.90 0.00 0.00 4.18
736 804 1.139947 GCCAGGACTAGTGCGAGTC 59.860 63.158 8.90 4.24 44.39 3.36
741 809 2.264124 GACTAGTGCGAGTCCCACA 58.736 57.895 10.46 0.00 40.07 4.17
742 810 0.109226 GACTAGTGCGAGTCCCACAC 60.109 60.000 10.46 4.34 40.07 3.82
743 811 1.215647 CTAGTGCGAGTCCCACACC 59.784 63.158 10.46 0.00 35.69 4.16
744 812 2.227089 CTAGTGCGAGTCCCACACCC 62.227 65.000 10.46 0.00 35.69 4.61
745 813 3.936203 GTGCGAGTCCCACACCCA 61.936 66.667 2.98 0.00 33.50 4.51
746 814 3.936203 TGCGAGTCCCACACCCAC 61.936 66.667 0.00 0.00 0.00 4.61
748 816 3.299977 CGAGTCCCACACCCACGA 61.300 66.667 0.00 0.00 0.00 4.35
749 817 2.863346 CGAGTCCCACACCCACGAA 61.863 63.158 0.00 0.00 0.00 3.85
750 818 1.004918 GAGTCCCACACCCACGAAG 60.005 63.158 0.00 0.00 0.00 3.79
751 819 2.668550 GTCCCACACCCACGAAGC 60.669 66.667 0.00 0.00 0.00 3.86
752 820 3.948719 TCCCACACCCACGAAGCC 61.949 66.667 0.00 0.00 0.00 4.35
755 823 4.263572 CACACCCACGAAGCCCCA 62.264 66.667 0.00 0.00 0.00 4.96
756 824 3.494254 ACACCCACGAAGCCCCAA 61.494 61.111 0.00 0.00 0.00 4.12
757 825 2.203422 CACCCACGAAGCCCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
758 826 2.115266 ACCCACGAAGCCCCAAAG 59.885 61.111 0.00 0.00 0.00 2.77
759 827 2.115266 CCCACGAAGCCCCAAAGT 59.885 61.111 0.00 0.00 0.00 2.66
760 828 1.971695 CCCACGAAGCCCCAAAGTC 60.972 63.158 0.00 0.00 0.00 3.01
761 829 1.971695 CCACGAAGCCCCAAAGTCC 60.972 63.158 0.00 0.00 0.00 3.85
762 830 1.228124 CACGAAGCCCCAAAGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
763 831 0.821711 CACGAAGCCCCAAAGTCCAA 60.822 55.000 0.00 0.00 0.00 3.53
764 832 0.106419 ACGAAGCCCCAAAGTCCAAA 60.106 50.000 0.00 0.00 0.00 3.28
765 833 1.036707 CGAAGCCCCAAAGTCCAAAA 58.963 50.000 0.00 0.00 0.00 2.44
766 834 1.410882 CGAAGCCCCAAAGTCCAAAAA 59.589 47.619 0.00 0.00 0.00 1.94
797 865 2.436911 ACTGTTTTGTCCGTAGAACCCT 59.563 45.455 0.00 0.00 0.00 4.34
822 890 1.985662 CCACCCACCGGCTACAGTA 60.986 63.158 0.00 0.00 0.00 2.74
839 907 2.211410 TACCAGTCCCACACCCACG 61.211 63.158 0.00 0.00 0.00 4.94
931 999 0.252012 CCTCACCACCCTCTCACTCT 60.252 60.000 0.00 0.00 0.00 3.24
940 1008 1.553417 CCCTCTCACTCTTCTTCCCCA 60.553 57.143 0.00 0.00 0.00 4.96
955 1023 0.107831 CCCCAATTCTTCCGCCGATA 59.892 55.000 0.00 0.00 0.00 2.92
1037 1106 3.268032 CCCCCTTCCCAGCTTGGT 61.268 66.667 3.35 0.00 35.17 3.67
1198 1272 1.827399 AACCGCTCCACCGATGAAGT 61.827 55.000 0.00 0.00 0.00 3.01
1395 1469 2.122813 CCTCCCCCATCTACCGCT 60.123 66.667 0.00 0.00 0.00 5.52
1942 2046 1.034292 GCCGTTCCCCTACGAGTACT 61.034 60.000 0.00 0.00 43.99 2.73
2265 2369 1.152819 CATCTACCTCCCCGACGGA 60.153 63.158 17.49 0.00 38.83 4.69
2412 2527 2.562298 CCCTGCTCTAGCCTTCTCTATG 59.438 54.545 0.00 0.00 41.18 2.23
2413 2528 2.029110 CCTGCTCTAGCCTTCTCTATGC 60.029 54.545 0.00 0.00 41.18 3.14
2476 2598 3.837213 ATCCAACAAAGATTCGTGCAG 57.163 42.857 0.00 0.00 0.00 4.41
2477 2599 2.844946 TCCAACAAAGATTCGTGCAGA 58.155 42.857 0.00 0.00 0.00 4.26
2478 2600 3.411446 TCCAACAAAGATTCGTGCAGAT 58.589 40.909 0.00 0.00 0.00 2.90
2480 2602 3.410850 CAACAAAGATTCGTGCAGATCG 58.589 45.455 0.00 0.00 0.00 3.69
2481 2603 2.688507 ACAAAGATTCGTGCAGATCGT 58.311 42.857 0.00 0.00 0.00 3.73
2482 2604 2.413112 ACAAAGATTCGTGCAGATCGTG 59.587 45.455 0.00 0.00 0.00 4.35
2496 2618 5.334435 CAGATCGTGCATGAATTTATCGT 57.666 39.130 13.65 0.00 0.00 3.73
2497 2619 5.135330 CAGATCGTGCATGAATTTATCGTG 58.865 41.667 13.65 2.83 46.09 4.35
2498 2620 4.811024 AGATCGTGCATGAATTTATCGTGT 59.189 37.500 13.65 0.00 45.27 4.49
2499 2621 4.257536 TCGTGCATGAATTTATCGTGTG 57.742 40.909 6.04 0.00 45.27 3.82
2500 2622 3.682377 TCGTGCATGAATTTATCGTGTGT 59.318 39.130 6.04 0.00 45.27 3.72
2501 2623 3.780279 CGTGCATGAATTTATCGTGTGTG 59.220 43.478 0.00 0.00 45.27 3.82
2502 2624 4.668941 CGTGCATGAATTTATCGTGTGTGT 60.669 41.667 0.00 0.00 45.27 3.72
2503 2625 5.445275 CGTGCATGAATTTATCGTGTGTGTA 60.445 40.000 0.00 0.00 45.27 2.90
2504 2626 5.959527 GTGCATGAATTTATCGTGTGTGTAG 59.040 40.000 0.00 0.00 45.27 2.74
2505 2627 4.963953 GCATGAATTTATCGTGTGTGTAGC 59.036 41.667 0.00 0.00 45.27 3.58
2506 2628 5.447144 GCATGAATTTATCGTGTGTGTAGCA 60.447 40.000 0.00 0.00 45.27 3.49
2507 2629 5.778161 TGAATTTATCGTGTGTGTAGCAG 57.222 39.130 0.00 0.00 0.00 4.24
2508 2630 5.234752 TGAATTTATCGTGTGTGTAGCAGT 58.765 37.500 0.00 0.00 0.00 4.40
2509 2631 5.120053 TGAATTTATCGTGTGTGTAGCAGTG 59.880 40.000 0.00 0.00 0.00 3.66
2510 2632 1.990799 TATCGTGTGTGTAGCAGTGC 58.009 50.000 7.13 7.13 0.00 4.40
2511 2633 0.318441 ATCGTGTGTGTAGCAGTGCT 59.682 50.000 23.44 23.44 43.41 4.40
2512 2634 0.318699 TCGTGTGTGTAGCAGTGCTC 60.319 55.000 23.64 13.85 40.44 4.26
2548 2670 4.452890 CAAGATATCCTTGTTTACCGCG 57.547 45.455 0.00 0.00 45.52 6.46
2615 2737 1.808945 CTCCAGTCACTGTCCATTTGC 59.191 52.381 3.56 0.00 0.00 3.68
2718 2841 5.359860 CCACTGTTTTGTTCCTTTCCTTACT 59.640 40.000 0.00 0.00 0.00 2.24
2719 2842 6.544564 CCACTGTTTTGTTCCTTTCCTTACTA 59.455 38.462 0.00 0.00 0.00 1.82
2764 2887 1.134946 GTCCATTGCGGGATTTTCTGG 59.865 52.381 0.00 0.00 39.62 3.86
2798 2921 3.434167 CCCTACATCAAATACTGCTGGCT 60.434 47.826 0.00 0.00 0.00 4.75
2840 2963 7.495934 TCCTGAGTTACTCTTTTGTTTTCTGAG 59.504 37.037 13.86 0.00 0.00 3.35
2841 2964 7.281100 CCTGAGTTACTCTTTTGTTTTCTGAGT 59.719 37.037 13.86 0.00 40.52 3.41
2862 2985 6.488344 TGAGTGTGAACCTAAAATTGTGCATA 59.512 34.615 0.00 0.00 0.00 3.14
2863 2986 7.013750 TGAGTGTGAACCTAAAATTGTGCATAA 59.986 33.333 0.00 0.00 0.00 1.90
2864 2987 7.895759 AGTGTGAACCTAAAATTGTGCATAAT 58.104 30.769 2.38 2.38 0.00 1.28
2865 2988 8.367156 AGTGTGAACCTAAAATTGTGCATAATT 58.633 29.630 14.94 14.94 31.87 1.40
2866 2989 8.434661 GTGTGAACCTAAAATTGTGCATAATTG 58.565 33.333 20.41 11.27 31.05 2.32
2867 2990 8.147058 TGTGAACCTAAAATTGTGCATAATTGT 58.853 29.630 20.41 17.63 31.05 2.71
2868 2991 8.434661 GTGAACCTAAAATTGTGCATAATTGTG 58.565 33.333 20.41 13.32 31.05 3.33
2869 2992 6.966435 ACCTAAAATTGTGCATAATTGTGC 57.034 33.333 20.41 19.24 45.25 4.57
2882 3005 6.235642 GCATAATTGTGCATCTTTTGTTTCG 58.764 36.000 20.86 0.00 44.43 3.46
2999 3122 1.216122 GCGATGAGAGTCAATCAGCC 58.784 55.000 0.00 0.00 29.24 4.85
3044 3172 3.507233 TCCTGCACAAATGAAAGGACATC 59.493 43.478 0.00 0.00 36.05 3.06
3078 3206 3.366396 CTTTGGCTAGTCCTGACTCCTA 58.634 50.000 2.48 0.00 42.54 2.94
3083 3211 3.070302 GGCTAGTCCTGACTCCTAAATGG 59.930 52.174 2.48 0.00 42.54 3.16
3091 3219 4.547671 CTGACTCCTAAATGGGGACTCTA 58.452 47.826 0.00 0.00 39.16 2.43
3109 3237 6.351371 GGACTCTACTTTGGATGTGATCTTGA 60.351 42.308 0.00 0.00 0.00 3.02
3125 3253 7.879677 TGTGATCTTGACTGTCTAATTTCACAT 59.120 33.333 19.82 0.74 35.97 3.21
3140 3268 9.423061 CTAATTTCACATTTAGAAAACCTTGGG 57.577 33.333 0.00 0.00 38.36 4.12
3149 3277 4.687901 AGAAAACCTTGGGTGAAATTGG 57.312 40.909 0.00 0.00 35.34 3.16
3156 3284 3.420893 CTTGGGTGAAATTGGCTGTAGA 58.579 45.455 0.00 0.00 0.00 2.59
3162 3290 4.142381 GGTGAAATTGGCTGTAGATGTTCC 60.142 45.833 0.00 0.00 0.00 3.62
3201 3329 2.421073 ACGATCAGGTTGACAATGCATG 59.579 45.455 0.00 0.00 0.00 4.06
3410 3619 5.983540 AGAAAAAGTGTTTGCCACCATTTA 58.016 33.333 0.00 0.00 45.74 1.40
3530 3741 6.612247 TTGTGTTGACATCAGACGTTAATT 57.388 33.333 0.00 0.00 30.13 1.40
3535 3746 6.932400 TGTTGACATCAGACGTTAATTAACCT 59.068 34.615 20.08 10.58 32.69 3.50
3548 3759 7.700656 ACGTTAATTAACCTAATCATGCTTTGC 59.299 33.333 20.08 0.00 32.69 3.68
3623 3834 1.745087 CTGTGTGCAACCTGAGTGTTT 59.255 47.619 0.00 0.00 34.36 2.83
3624 3835 2.164219 CTGTGTGCAACCTGAGTGTTTT 59.836 45.455 0.00 0.00 34.36 2.43
3625 3836 2.560542 TGTGTGCAACCTGAGTGTTTTT 59.439 40.909 0.00 0.00 34.36 1.94
3648 3859 3.790089 TTTGGAGAAGGAGGAAAGACC 57.210 47.619 0.00 0.00 39.35 3.85
3649 3860 1.657804 TGGAGAAGGAGGAAAGACCC 58.342 55.000 0.00 0.00 40.05 4.46
3650 3861 0.913205 GGAGAAGGAGGAAAGACCCC 59.087 60.000 0.00 0.00 40.05 4.95
3651 3862 1.556002 GGAGAAGGAGGAAAGACCCCT 60.556 57.143 0.00 0.00 39.75 4.79
3652 3863 1.557371 GAGAAGGAGGAAAGACCCCTG 59.443 57.143 0.00 0.00 38.64 4.45
3653 3864 0.621082 GAAGGAGGAAAGACCCCTGG 59.379 60.000 0.00 0.00 38.64 4.45
3654 3865 1.501654 AAGGAGGAAAGACCCCTGGC 61.502 60.000 0.00 0.00 38.64 4.85
3655 3866 2.677848 GAGGAAAGACCCCTGGCC 59.322 66.667 0.00 0.00 40.05 5.36
3656 3867 1.925972 GAGGAAAGACCCCTGGCCT 60.926 63.158 3.32 0.00 40.05 5.19
3657 3868 1.916206 GAGGAAAGACCCCTGGCCTC 61.916 65.000 3.32 0.00 40.05 4.70
3667 3878 1.448540 CCTGGCCTCGTTGCTGTAG 60.449 63.158 3.32 0.00 0.00 2.74
4015 4234 1.601903 GGATCGCAAATACGCCATTCA 59.398 47.619 0.00 0.00 0.00 2.57
4023 4242 0.740737 ATACGCCATTCAAGCAAGGC 59.259 50.000 0.00 0.00 43.61 4.35
4052 4271 1.570967 CACTGGTGTGCACATGTCG 59.429 57.895 24.69 14.00 37.38 4.35
4119 4338 8.923270 TGATCAGATACTACCATTATCACAACA 58.077 33.333 0.00 0.00 0.00 3.33
4189 4408 2.159198 CCAATGGCAGCAAGGTAATGTC 60.159 50.000 0.00 0.00 0.00 3.06
4204 4423 0.324091 ATGTCCGAGGAGGTACCGTT 60.324 55.000 6.18 0.00 44.74 4.44
4262 4481 1.807573 CAAGCGCTTCGAGGAGGAC 60.808 63.158 22.21 0.00 0.00 3.85
4333 4553 7.984391 TGGTACATACATAATGCTGTTCTTTG 58.016 34.615 0.00 0.00 39.39 2.77
4372 4592 1.071699 TCTGTGCCACTAAACCCAGTC 59.928 52.381 0.00 0.00 0.00 3.51
4379 4599 2.487265 CCACTAAACCCAGTCTGCAACT 60.487 50.000 0.00 0.00 39.44 3.16
4417 4637 1.377725 CAGCATTCTTGGCTCCGGT 60.378 57.895 0.00 0.00 40.23 5.28
4441 7427 2.806288 ATTCGACGCATTTCCTTTCG 57.194 45.000 0.00 0.00 0.00 3.46
4615 7605 1.067295 TTCCTGCATGTGGAGAGGTT 58.933 50.000 2.87 0.00 35.31 3.50
4637 7627 4.522114 TGACACATTTGGAGTTGTCAAGA 58.478 39.130 0.86 0.00 34.01 3.02
4699 7691 0.040058 AAGGTGCCATGGATCTTGCA 59.960 50.000 18.40 1.15 0.00 4.08
4717 7709 1.960471 GCACCCTGTAGGCTAGAGACA 60.960 57.143 19.45 3.94 40.58 3.41
4736 7728 7.427214 AGAGACAAGAGTGTTTCTAACTGTAC 58.573 38.462 0.00 0.00 45.01 2.90
4776 7768 1.395045 TCCTGGATGGAGCAGTAGCG 61.395 60.000 0.00 0.00 40.56 4.26
4809 7801 2.832129 TCAAGATCTGGTCTGGTGTACC 59.168 50.000 0.00 0.00 37.23 3.34
4861 7874 0.174162 ATACACCGAACACCCGTAGC 59.826 55.000 0.00 0.00 0.00 3.58
4881 7894 2.203070 GGCTACCCCATGAGCGTG 60.203 66.667 0.00 0.00 39.72 5.34
4924 7937 4.501714 CGCCCGTACCAAGCGCTA 62.502 66.667 12.05 0.00 43.72 4.26
4926 7939 2.574929 CCCGTACCAAGCGCTACA 59.425 61.111 12.05 0.00 0.00 2.74
4984 8068 2.357034 CCCGGTCACACAACCTCG 60.357 66.667 0.00 0.00 37.15 4.63
5006 8091 9.961265 CCTCGTATGTTTATGTACATCTTTCTA 57.039 33.333 12.68 0.00 39.39 2.10
5061 8151 7.873719 TTTCCTTTTCCCCTTTTTCATTTTC 57.126 32.000 0.00 0.00 0.00 2.29
5071 8163 5.305386 CCCTTTTTCATTTTCTCTTCCTGGT 59.695 40.000 0.00 0.00 0.00 4.00
5081 8173 3.165875 TCTCTTCCTGGTTCGATGAAGT 58.834 45.455 0.00 0.00 36.47 3.01
5102 8194 8.474025 TGAAGTTTTTCCGCAAAATATATGGAT 58.526 29.630 0.00 0.00 36.72 3.41
5103 8195 9.313118 GAAGTTTTTCCGCAAAATATATGGATT 57.687 29.630 0.00 0.00 36.72 3.01
5104 8196 9.665719 AAGTTTTTCCGCAAAATATATGGATTT 57.334 25.926 0.00 0.00 36.72 2.17
5180 8272 5.584253 TCAACGAACTTTTCCCAAATTCA 57.416 34.783 0.00 0.00 0.00 2.57
5190 8282 8.212317 ACTTTTCCCAAATTCAATGAACTTTG 57.788 30.769 16.60 16.60 0.00 2.77
5197 8289 8.124199 CCCAAATTCAATGAACTTTGTTTCAAG 58.876 33.333 19.38 10.01 38.95 3.02
5205 8297 7.992180 ATGAACTTTGTTTCAAGTCAATGAC 57.008 32.000 5.02 5.02 38.95 3.06
5207 8299 5.913137 ACTTTGTTTCAAGTCAATGACCA 57.087 34.783 10.12 0.00 32.18 4.02
5212 8304 8.558973 TTTGTTTCAAGTCAATGACCATTTTT 57.441 26.923 10.12 0.00 32.18 1.94
5267 8359 8.422973 TGATGAACTTTTCTTCAAATTTGGTG 57.577 30.769 17.90 10.89 39.83 4.17
5268 8360 8.256605 TGATGAACTTTTCTTCAAATTTGGTGA 58.743 29.630 17.90 12.86 39.83 4.02
5269 8361 9.097257 GATGAACTTTTCTTCAAATTTGGTGAA 57.903 29.630 17.90 17.29 33.85 3.18
5298 8390 7.928908 TTTCAAATCAATGAACCTTTCTTCG 57.071 32.000 0.00 0.00 38.95 3.79
5310 8402 4.911390 ACCTTTCTTCGGATTGATGAACT 58.089 39.130 0.00 0.00 39.63 3.01
5437 8567 6.879188 TTTTCAAAAATCCGTGAACACTTC 57.121 33.333 3.51 0.00 33.58 3.01
5444 8574 9.030301 CAAAAATCCGTGAACACTTCTAAAATT 57.970 29.630 3.51 0.00 0.00 1.82
5449 8579 8.610248 TCCGTGAACACTTCTAAAATTATGAA 57.390 30.769 3.51 0.00 0.00 2.57
5451 8581 9.840427 CCGTGAACACTTCTAAAATTATGAATT 57.160 29.630 3.51 0.00 0.00 2.17
5550 8683 1.000955 GCGAACAGGAGAAAGAGGACA 59.999 52.381 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.580691 TGTCATAATCAACTCACATTCGACC 59.419 40.000 0.00 0.00 0.00 4.79
42 43 9.185192 GAGCAATGCCTTTAATAATGTAATGAC 57.815 33.333 0.00 0.00 0.00 3.06
76 77 3.263170 TCATCCAGAAGAACCATTCCGAA 59.737 43.478 0.00 0.00 0.00 4.30
78 79 3.266510 TCATCCAGAAGAACCATTCCG 57.733 47.619 0.00 0.00 0.00 4.30
88 89 7.414984 GCAAGAATCTAGGTTTTCATCCAGAAG 60.415 40.741 0.00 0.00 37.57 2.85
138 139 0.741221 AAAGGGAGCGACGCTGATTC 60.741 55.000 29.85 12.95 39.88 2.52
139 140 0.321653 AAAAGGGAGCGACGCTGATT 60.322 50.000 29.85 15.54 39.88 2.57
154 160 3.923461 TCAACAACAACGCCTTCAAAAAG 59.077 39.130 0.00 0.00 0.00 2.27
158 164 3.577649 TTTCAACAACAACGCCTTCAA 57.422 38.095 0.00 0.00 0.00 2.69
203 209 3.261981 ACTAAAAGCATACACCCTCCG 57.738 47.619 0.00 0.00 0.00 4.63
264 330 9.629878 TTGTCCTAAAATAAGTGTGAAGGTTAA 57.370 29.630 0.00 0.00 0.00 2.01
284 350 9.251440 GAATTTTATTTACTACCCCTTTGTCCT 57.749 33.333 0.00 0.00 0.00 3.85
334 402 7.860872 GGGTTCTACAGACAAAACAAAATAGTG 59.139 37.037 0.00 0.00 0.00 2.74
338 406 7.937649 GTAGGGTTCTACAGACAAAACAAAAT 58.062 34.615 0.00 0.00 43.95 1.82
352 420 1.626825 TGTGGCCTTGTAGGGTTCTAC 59.373 52.381 3.32 0.00 44.57 2.59
353 421 1.626825 GTGTGGCCTTGTAGGGTTCTA 59.373 52.381 3.32 0.00 35.37 2.10
354 422 0.400594 GTGTGGCCTTGTAGGGTTCT 59.599 55.000 3.32 0.00 35.37 3.01
355 423 0.109723 TGTGTGGCCTTGTAGGGTTC 59.890 55.000 3.32 0.00 35.37 3.62
356 424 0.179001 GTGTGTGGCCTTGTAGGGTT 60.179 55.000 3.32 0.00 35.37 4.11
357 425 1.454539 GTGTGTGGCCTTGTAGGGT 59.545 57.895 3.32 0.00 35.37 4.34
358 426 1.303317 GGTGTGTGGCCTTGTAGGG 60.303 63.158 3.32 0.00 35.37 3.53
359 427 1.671054 CGGTGTGTGGCCTTGTAGG 60.671 63.158 3.32 0.00 38.80 3.18
360 428 1.671054 CCGGTGTGTGGCCTTGTAG 60.671 63.158 3.32 0.00 0.00 2.74
361 429 2.428187 CCGGTGTGTGGCCTTGTA 59.572 61.111 3.32 0.00 0.00 2.41
368 436 1.667830 CACTGTAGCCGGTGTGTGG 60.668 63.158 1.90 0.00 42.07 4.17
369 437 3.951332 CACTGTAGCCGGTGTGTG 58.049 61.111 1.90 2.06 42.07 3.82
378 446 3.458189 CAGGTATAACTGGCACTGTAGC 58.542 50.000 10.15 0.00 40.38 3.58
388 456 1.819305 GCCCATGGCCAGGTATAACTG 60.819 57.143 17.55 11.08 44.06 3.16
389 457 0.478507 GCCCATGGCCAGGTATAACT 59.521 55.000 17.55 0.00 44.06 2.24
390 458 3.036431 GCCCATGGCCAGGTATAAC 57.964 57.895 17.55 0.00 44.06 1.89
415 483 1.844544 TTAAGGCCCGACCCAAGTCC 61.845 60.000 0.00 0.00 40.12 3.85
416 484 0.037160 TTTAAGGCCCGACCCAAGTC 59.963 55.000 0.00 0.00 40.58 3.01
417 485 0.479378 TTTTAAGGCCCGACCCAAGT 59.521 50.000 0.00 0.00 40.58 3.16
418 486 1.544246 CTTTTTAAGGCCCGACCCAAG 59.456 52.381 0.00 0.00 40.58 3.61
419 487 1.623163 CTTTTTAAGGCCCGACCCAA 58.377 50.000 0.00 0.00 40.58 4.12
420 488 0.896479 GCTTTTTAAGGCCCGACCCA 60.896 55.000 0.00 0.00 40.58 4.51
421 489 1.888018 GCTTTTTAAGGCCCGACCC 59.112 57.895 0.00 0.00 40.58 4.46
439 507 1.165270 CCTTAGTTTTCTGCCGTGGG 58.835 55.000 0.00 0.00 0.00 4.61
440 508 0.521735 GCCTTAGTTTTCTGCCGTGG 59.478 55.000 0.00 0.00 0.00 4.94
441 509 0.521735 GGCCTTAGTTTTCTGCCGTG 59.478 55.000 0.00 0.00 31.55 4.94
442 510 0.400594 AGGCCTTAGTTTTCTGCCGT 59.599 50.000 0.00 0.00 46.67 5.68
443 511 2.280628 CTAGGCCTTAGTTTTCTGCCG 58.719 52.381 12.58 0.00 46.67 5.69
444 512 2.644676 CCTAGGCCTTAGTTTTCTGCC 58.355 52.381 12.58 0.00 42.48 4.85
445 513 2.017782 GCCTAGGCCTTAGTTTTCTGC 58.982 52.381 24.19 0.65 34.56 4.26
458 526 2.584391 CCGATGGTAGGGCCTAGGC 61.584 68.421 26.55 26.55 38.35 3.93
459 527 1.913762 CCCGATGGTAGGGCCTAGG 60.914 68.421 15.05 11.18 42.77 3.02
460 528 3.793060 CCCGATGGTAGGGCCTAG 58.207 66.667 15.05 1.15 42.77 3.02
466 534 2.951229 AAAATAGGCCCGATGGTAGG 57.049 50.000 0.00 0.00 0.00 3.18
483 551 2.701423 GGGCCAGAGTTGGGTTTAAAAA 59.299 45.455 4.39 0.00 45.16 1.94
484 552 2.321719 GGGCCAGAGTTGGGTTTAAAA 58.678 47.619 4.39 0.00 45.16 1.52
485 553 1.218196 TGGGCCAGAGTTGGGTTTAAA 59.782 47.619 0.00 0.00 45.16 1.52
486 554 0.854218 TGGGCCAGAGTTGGGTTTAA 59.146 50.000 0.00 0.00 45.16 1.52
487 555 1.005450 GATGGGCCAGAGTTGGGTTTA 59.995 52.381 13.78 0.00 45.16 2.01
488 556 0.251787 GATGGGCCAGAGTTGGGTTT 60.252 55.000 13.78 0.00 45.16 3.27
489 557 1.142688 AGATGGGCCAGAGTTGGGTT 61.143 55.000 13.78 0.00 45.16 4.11
490 558 1.542375 AGATGGGCCAGAGTTGGGT 60.542 57.895 13.78 0.00 45.16 4.51
491 559 1.225704 GAGATGGGCCAGAGTTGGG 59.774 63.158 13.78 0.00 45.16 4.12
493 561 0.824109 TACGAGATGGGCCAGAGTTG 59.176 55.000 13.78 5.30 0.00 3.16
494 562 1.568504 TTACGAGATGGGCCAGAGTT 58.431 50.000 13.78 0.00 0.00 3.01
495 563 1.568504 TTTACGAGATGGGCCAGAGT 58.431 50.000 13.78 11.49 0.00 3.24
496 564 2.691409 TTTTACGAGATGGGCCAGAG 57.309 50.000 13.78 5.55 0.00 3.35
497 565 2.939640 GCTTTTTACGAGATGGGCCAGA 60.940 50.000 13.78 0.00 0.00 3.86
498 566 1.401905 GCTTTTTACGAGATGGGCCAG 59.598 52.381 13.78 0.00 0.00 4.85
499 567 1.459450 GCTTTTTACGAGATGGGCCA 58.541 50.000 9.61 9.61 0.00 5.36
500 568 0.738975 GGCTTTTTACGAGATGGGCC 59.261 55.000 0.00 0.00 0.00 5.80
501 569 0.738975 GGGCTTTTTACGAGATGGGC 59.261 55.000 0.00 0.00 0.00 5.36
502 570 2.017049 CAGGGCTTTTTACGAGATGGG 58.983 52.381 0.00 0.00 0.00 4.00
503 571 2.985896 TCAGGGCTTTTTACGAGATGG 58.014 47.619 0.00 0.00 0.00 3.51
504 572 5.371115 TTTTCAGGGCTTTTTACGAGATG 57.629 39.130 0.00 0.00 0.00 2.90
505 573 4.082733 GCTTTTCAGGGCTTTTTACGAGAT 60.083 41.667 0.00 0.00 0.00 2.75
506 574 3.252458 GCTTTTCAGGGCTTTTTACGAGA 59.748 43.478 0.00 0.00 0.00 4.04
507 575 3.253432 AGCTTTTCAGGGCTTTTTACGAG 59.747 43.478 0.00 0.00 34.96 4.18
508 576 3.219281 AGCTTTTCAGGGCTTTTTACGA 58.781 40.909 0.00 0.00 34.96 3.43
509 577 3.253432 AGAGCTTTTCAGGGCTTTTTACG 59.747 43.478 0.00 0.00 39.05 3.18
510 578 4.855715 AGAGCTTTTCAGGGCTTTTTAC 57.144 40.909 0.00 0.00 39.05 2.01
511 579 5.048013 GCTAAGAGCTTTTCAGGGCTTTTTA 60.048 40.000 0.00 0.00 38.45 1.52
512 580 4.262207 GCTAAGAGCTTTTCAGGGCTTTTT 60.262 41.667 0.00 0.00 38.45 1.94
513 581 3.256879 GCTAAGAGCTTTTCAGGGCTTTT 59.743 43.478 0.00 0.00 38.45 2.27
514 582 2.822561 GCTAAGAGCTTTTCAGGGCTTT 59.177 45.455 0.00 0.00 38.45 3.51
515 583 2.441410 GCTAAGAGCTTTTCAGGGCTT 58.559 47.619 0.00 0.00 38.45 4.35
516 584 1.677217 CGCTAAGAGCTTTTCAGGGCT 60.677 52.381 0.00 0.00 39.60 5.19
517 585 0.729690 CGCTAAGAGCTTTTCAGGGC 59.270 55.000 0.00 0.00 39.60 5.19
518 586 0.729690 GCGCTAAGAGCTTTTCAGGG 59.270 55.000 0.00 0.28 39.60 4.45
519 587 1.731720 AGCGCTAAGAGCTTTTCAGG 58.268 50.000 8.99 0.00 43.24 3.86
527 595 1.595655 GGCCCTAAGCGCTAAGAGC 60.596 63.158 12.05 12.32 45.17 4.09
528 596 1.300233 CGGCCCTAAGCGCTAAGAG 60.300 63.158 12.05 8.76 45.17 2.85
529 597 2.056223 ACGGCCCTAAGCGCTAAGA 61.056 57.895 12.05 0.00 45.17 2.10
530 598 1.883084 CACGGCCCTAAGCGCTAAG 60.883 63.158 12.05 1.58 45.17 2.18
531 599 2.185867 CACGGCCCTAAGCGCTAA 59.814 61.111 12.05 0.00 45.17 3.09
532 600 3.845259 CCACGGCCCTAAGCGCTA 61.845 66.667 12.05 0.00 45.17 4.26
550 618 2.109425 TTTTAAGGAAGAGGCTCGGC 57.891 50.000 9.22 4.97 0.00 5.54
551 619 2.356069 GCATTTTAAGGAAGAGGCTCGG 59.644 50.000 9.22 0.00 0.00 4.63
552 620 3.274288 AGCATTTTAAGGAAGAGGCTCG 58.726 45.455 9.22 0.00 0.00 5.03
553 621 6.951062 ATTAGCATTTTAAGGAAGAGGCTC 57.049 37.500 6.34 6.34 0.00 4.70
554 622 7.449704 CCATATTAGCATTTTAAGGAAGAGGCT 59.550 37.037 0.00 0.00 0.00 4.58
555 623 7.597386 CCATATTAGCATTTTAAGGAAGAGGC 58.403 38.462 0.00 0.00 0.00 4.70
556 624 7.231317 TGCCATATTAGCATTTTAAGGAAGAGG 59.769 37.037 0.00 0.00 34.69 3.69
557 625 8.169977 TGCCATATTAGCATTTTAAGGAAGAG 57.830 34.615 0.00 0.00 34.69 2.85
558 626 8.532186 TTGCCATATTAGCATTTTAAGGAAGA 57.468 30.769 0.00 0.00 40.59 2.87
559 627 7.383300 GCTTGCCATATTAGCATTTTAAGGAAG 59.617 37.037 0.00 0.00 40.59 3.46
560 628 7.209475 GCTTGCCATATTAGCATTTTAAGGAA 58.791 34.615 0.00 0.00 40.59 3.36
561 629 6.239289 GGCTTGCCATATTAGCATTTTAAGGA 60.239 38.462 6.79 0.00 40.59 3.36
562 630 5.928264 GGCTTGCCATATTAGCATTTTAAGG 59.072 40.000 6.79 0.00 40.59 2.69
563 631 5.928264 GGGCTTGCCATATTAGCATTTTAAG 59.072 40.000 14.04 0.00 40.59 1.85
564 632 5.365025 TGGGCTTGCCATATTAGCATTTTAA 59.635 36.000 14.04 0.00 40.59 1.52
565 633 4.898265 TGGGCTTGCCATATTAGCATTTTA 59.102 37.500 14.04 0.00 40.59 1.52
566 634 3.710677 TGGGCTTGCCATATTAGCATTTT 59.289 39.130 14.04 0.00 40.59 1.82
567 635 3.307506 TGGGCTTGCCATATTAGCATTT 58.692 40.909 14.04 0.00 40.59 2.32
568 636 2.961510 TGGGCTTGCCATATTAGCATT 58.038 42.857 14.04 0.00 40.59 3.56
569 637 2.681319 TGGGCTTGCCATATTAGCAT 57.319 45.000 14.04 0.00 40.59 3.79
570 638 2.450867 TTGGGCTTGCCATATTAGCA 57.549 45.000 14.04 0.00 38.81 3.49
571 639 2.232208 GGATTGGGCTTGCCATATTAGC 59.768 50.000 14.04 0.00 0.00 3.09
572 640 2.827921 GGGATTGGGCTTGCCATATTAG 59.172 50.000 14.04 0.00 0.00 1.73
573 641 2.817463 CGGGATTGGGCTTGCCATATTA 60.817 50.000 14.04 0.00 0.00 0.98
574 642 1.720781 GGGATTGGGCTTGCCATATT 58.279 50.000 14.04 0.00 0.00 1.28
575 643 0.540365 CGGGATTGGGCTTGCCATAT 60.540 55.000 14.04 5.77 0.00 1.78
576 644 1.152777 CGGGATTGGGCTTGCCATA 60.153 57.895 14.04 0.74 0.00 2.74
577 645 2.442643 CGGGATTGGGCTTGCCAT 60.443 61.111 14.04 0.00 0.00 4.40
578 646 3.936772 GACGGGATTGGGCTTGCCA 62.937 63.158 14.04 0.00 0.00 4.92
579 647 3.140814 GACGGGATTGGGCTTGCC 61.141 66.667 2.49 2.49 0.00 4.52
580 648 3.140814 GGACGGGATTGGGCTTGC 61.141 66.667 0.00 0.00 0.00 4.01
581 649 1.750399 CTGGACGGGATTGGGCTTG 60.750 63.158 0.00 0.00 0.00 4.01
582 650 2.677228 CTGGACGGGATTGGGCTT 59.323 61.111 0.00 0.00 0.00 4.35
583 651 3.411517 CCTGGACGGGATTGGGCT 61.412 66.667 0.00 0.00 0.00 5.19
585 653 4.506255 GGCCTGGACGGGATTGGG 62.506 72.222 0.00 0.00 0.00 4.12
586 654 4.506255 GGGCCTGGACGGGATTGG 62.506 72.222 0.84 0.00 0.00 3.16
587 655 3.411517 AGGGCCTGGACGGGATTG 61.412 66.667 4.50 0.00 0.00 2.67
588 656 3.411517 CAGGGCCTGGACGGGATT 61.412 66.667 26.34 0.00 0.00 3.01
606 674 1.089920 CTGAGTTTTGAGCCCATCGG 58.910 55.000 0.00 0.00 0.00 4.18
607 675 1.734465 GACTGAGTTTTGAGCCCATCG 59.266 52.381 0.00 0.00 0.00 3.84
608 676 2.087646 GGACTGAGTTTTGAGCCCATC 58.912 52.381 0.00 0.00 0.00 3.51
609 677 1.272147 GGGACTGAGTTTTGAGCCCAT 60.272 52.381 0.29 0.00 34.25 4.00
610 678 0.110486 GGGACTGAGTTTTGAGCCCA 59.890 55.000 0.29 0.00 34.25 5.36
611 679 0.110486 TGGGACTGAGTTTTGAGCCC 59.890 55.000 0.00 0.00 34.67 5.19
612 680 1.882623 CTTGGGACTGAGTTTTGAGCC 59.117 52.381 0.00 0.00 0.00 4.70
613 681 1.268079 GCTTGGGACTGAGTTTTGAGC 59.732 52.381 0.00 0.00 0.00 4.26
614 682 1.882623 GGCTTGGGACTGAGTTTTGAG 59.117 52.381 0.00 0.00 0.00 3.02
615 683 1.478654 GGGCTTGGGACTGAGTTTTGA 60.479 52.381 0.00 0.00 0.00 2.69
616 684 0.961753 GGGCTTGGGACTGAGTTTTG 59.038 55.000 0.00 0.00 0.00 2.44
617 685 0.555769 TGGGCTTGGGACTGAGTTTT 59.444 50.000 0.00 0.00 0.00 2.43
618 686 0.111253 CTGGGCTTGGGACTGAGTTT 59.889 55.000 0.00 0.00 0.00 2.66
619 687 1.763770 CTGGGCTTGGGACTGAGTT 59.236 57.895 0.00 0.00 0.00 3.01
620 688 2.900106 GCTGGGCTTGGGACTGAGT 61.900 63.158 0.00 0.00 0.00 3.41
621 689 2.045536 GCTGGGCTTGGGACTGAG 60.046 66.667 0.00 0.00 0.00 3.35
622 690 3.650950 GGCTGGGCTTGGGACTGA 61.651 66.667 0.00 0.00 0.00 3.41
623 691 4.748144 GGGCTGGGCTTGGGACTG 62.748 72.222 0.00 0.00 0.00 3.51
625 693 4.066139 ATGGGCTGGGCTTGGGAC 62.066 66.667 0.00 0.00 0.00 4.46
626 694 4.064768 CATGGGCTGGGCTTGGGA 62.065 66.667 0.00 0.00 0.00 4.37
627 695 4.064768 TCATGGGCTGGGCTTGGG 62.065 66.667 0.00 0.00 0.00 4.12
628 696 2.441532 CTCATGGGCTGGGCTTGG 60.442 66.667 0.00 0.00 0.00 3.61
633 701 1.751927 GACTTGCTCATGGGCTGGG 60.752 63.158 20.42 10.99 0.00 4.45
634 702 1.751927 GGACTTGCTCATGGGCTGG 60.752 63.158 20.42 13.55 0.00 4.85
635 703 0.395311 ATGGACTTGCTCATGGGCTG 60.395 55.000 20.42 13.99 0.00 4.85
636 704 0.333993 AATGGACTTGCTCATGGGCT 59.666 50.000 20.42 0.00 0.00 5.19
637 705 0.458669 CAATGGACTTGCTCATGGGC 59.541 55.000 11.75 11.75 0.00 5.36
638 706 1.108776 CCAATGGACTTGCTCATGGG 58.891 55.000 0.00 0.00 33.20 4.00
639 707 1.108776 CCCAATGGACTTGCTCATGG 58.891 55.000 0.00 0.00 33.20 3.66
640 708 0.458669 GCCCAATGGACTTGCTCATG 59.541 55.000 0.00 0.00 33.20 3.07
641 709 0.685458 GGCCCAATGGACTTGCTCAT 60.685 55.000 0.00 0.00 36.35 2.90
642 710 1.304381 GGCCCAATGGACTTGCTCA 60.304 57.895 0.00 0.00 36.35 4.26
643 711 3.608432 GGCCCAATGGACTTGCTC 58.392 61.111 0.00 0.00 36.35 4.26
658 726 3.807561 GCACTAAAATCTAGGGCCTAGGC 60.808 52.174 34.38 26.55 37.98 3.93
659 727 4.009370 GCACTAAAATCTAGGGCCTAGG 57.991 50.000 34.38 21.80 37.98 3.02
664 732 1.594331 CCGGCACTAAAATCTAGGGC 58.406 55.000 0.00 0.00 42.93 5.19
665 733 1.814248 GCCCGGCACTAAAATCTAGGG 60.814 57.143 3.91 0.00 40.49 3.53
666 734 1.594331 GCCCGGCACTAAAATCTAGG 58.406 55.000 3.91 0.00 0.00 3.02
667 735 1.141053 AGGCCCGGCACTAAAATCTAG 59.859 52.381 12.58 0.00 0.00 2.43
668 736 1.134220 CAGGCCCGGCACTAAAATCTA 60.134 52.381 12.58 0.00 0.00 1.98
669 737 0.394352 CAGGCCCGGCACTAAAATCT 60.394 55.000 12.58 0.00 0.00 2.40
670 738 1.384222 CCAGGCCCGGCACTAAAATC 61.384 60.000 12.58 0.00 0.00 2.17
671 739 1.379843 CCAGGCCCGGCACTAAAAT 60.380 57.895 12.58 0.00 0.00 1.82
672 740 2.034999 CCAGGCCCGGCACTAAAA 59.965 61.111 12.58 0.00 0.00 1.52
673 741 4.041762 CCCAGGCCCGGCACTAAA 62.042 66.667 12.58 0.00 0.00 1.85
709 777 1.457643 TAGTCCTGGCCATCTCCGG 60.458 63.158 5.51 3.08 0.00 5.14
710 778 0.757188 ACTAGTCCTGGCCATCTCCG 60.757 60.000 5.51 0.00 0.00 4.63
711 779 0.755686 CACTAGTCCTGGCCATCTCC 59.244 60.000 5.51 0.00 0.00 3.71
712 780 0.105778 GCACTAGTCCTGGCCATCTC 59.894 60.000 5.51 0.00 0.00 2.75
713 781 1.680522 CGCACTAGTCCTGGCCATCT 61.681 60.000 5.51 8.22 0.00 2.90
714 782 1.227380 CGCACTAGTCCTGGCCATC 60.227 63.158 5.51 0.00 0.00 3.51
715 783 1.680522 CTCGCACTAGTCCTGGCCAT 61.681 60.000 5.51 0.00 0.00 4.40
716 784 2.283604 TCGCACTAGTCCTGGCCA 60.284 61.111 4.71 4.71 0.00 5.36
717 785 2.286127 GACTCGCACTAGTCCTGGCC 62.286 65.000 0.00 0.00 40.06 5.36
718 786 1.139947 GACTCGCACTAGTCCTGGC 59.860 63.158 0.00 0.00 40.06 4.85
723 791 2.264124 TGTGGGACTCGCACTAGTC 58.736 57.895 22.68 0.00 45.53 2.59
724 792 4.513777 TGTGGGACTCGCACTAGT 57.486 55.556 22.68 0.00 45.53 2.57
729 797 3.936203 GTGGGTGTGGGACTCGCA 61.936 66.667 0.00 0.00 35.41 5.10
731 799 2.765250 CTTCGTGGGTGTGGGACTCG 62.765 65.000 0.00 0.00 0.00 4.18
732 800 1.004918 CTTCGTGGGTGTGGGACTC 60.005 63.158 0.00 0.00 0.00 3.36
733 801 3.148084 CTTCGTGGGTGTGGGACT 58.852 61.111 0.00 0.00 0.00 3.85
734 802 2.668550 GCTTCGTGGGTGTGGGAC 60.669 66.667 0.00 0.00 0.00 4.46
735 803 3.948719 GGCTTCGTGGGTGTGGGA 61.949 66.667 0.00 0.00 0.00 4.37
738 806 3.783362 TTGGGGCTTCGTGGGTGTG 62.783 63.158 0.00 0.00 0.00 3.82
739 807 2.976494 CTTTGGGGCTTCGTGGGTGT 62.976 60.000 0.00 0.00 0.00 4.16
740 808 2.203422 TTTGGGGCTTCGTGGGTG 60.203 61.111 0.00 0.00 0.00 4.61
741 809 2.115266 CTTTGGGGCTTCGTGGGT 59.885 61.111 0.00 0.00 0.00 4.51
742 810 1.971695 GACTTTGGGGCTTCGTGGG 60.972 63.158 0.00 0.00 0.00 4.61
743 811 1.971695 GGACTTTGGGGCTTCGTGG 60.972 63.158 0.00 0.00 0.00 4.94
744 812 0.821711 TTGGACTTTGGGGCTTCGTG 60.822 55.000 0.00 0.00 0.00 4.35
745 813 0.106419 TTTGGACTTTGGGGCTTCGT 60.106 50.000 0.00 0.00 0.00 3.85
746 814 1.036707 TTTTGGACTTTGGGGCTTCG 58.963 50.000 0.00 0.00 0.00 3.79
765 833 4.142469 CGGACAAAACAGTGAGGAGTTTTT 60.142 41.667 0.00 0.00 43.26 1.94
766 834 3.377172 CGGACAAAACAGTGAGGAGTTTT 59.623 43.478 0.00 0.00 45.77 2.43
767 835 2.943033 CGGACAAAACAGTGAGGAGTTT 59.057 45.455 0.00 0.00 39.46 2.66
768 836 2.093128 ACGGACAAAACAGTGAGGAGTT 60.093 45.455 0.00 0.00 0.00 3.01
769 837 1.485066 ACGGACAAAACAGTGAGGAGT 59.515 47.619 0.00 0.00 0.00 3.85
770 838 2.240493 ACGGACAAAACAGTGAGGAG 57.760 50.000 0.00 0.00 0.00 3.69
771 839 2.960384 TCTACGGACAAAACAGTGAGGA 59.040 45.455 0.00 0.00 0.00 3.71
772 840 3.380479 TCTACGGACAAAACAGTGAGG 57.620 47.619 0.00 0.00 0.00 3.86
773 841 3.493503 GGTTCTACGGACAAAACAGTGAG 59.506 47.826 0.00 0.00 0.00 3.51
774 842 3.460103 GGTTCTACGGACAAAACAGTGA 58.540 45.455 0.00 0.00 0.00 3.41
775 843 2.546789 GGGTTCTACGGACAAAACAGTG 59.453 50.000 0.00 0.00 0.00 3.66
776 844 2.436911 AGGGTTCTACGGACAAAACAGT 59.563 45.455 0.00 0.00 0.00 3.55
777 845 3.121738 AGGGTTCTACGGACAAAACAG 57.878 47.619 0.00 0.00 0.00 3.16
778 846 3.387374 TGTAGGGTTCTACGGACAAAACA 59.613 43.478 0.00 0.00 46.65 2.83
797 865 3.642503 CCGGTGGGTGGCCTTGTA 61.643 66.667 3.32 0.00 0.00 2.41
822 890 3.556306 CGTGGGTGTGGGACTGGT 61.556 66.667 0.00 0.00 0.00 4.00
839 907 0.969149 CCTTTGGACTTTGGGGCTTC 59.031 55.000 0.00 0.00 0.00 3.86
867 935 3.138283 GTGGGTATGGGATTGATTCCTCA 59.862 47.826 0.00 0.00 44.75 3.86
910 978 2.997315 TGAGAGGGTGGTGAGGCG 60.997 66.667 0.00 0.00 0.00 5.52
931 999 1.615919 GGCGGAAGAATTGGGGAAGAA 60.616 52.381 0.00 0.00 0.00 2.52
940 1008 2.632996 TGGAGATATCGGCGGAAGAATT 59.367 45.455 7.21 0.00 0.00 2.17
955 1023 1.073397 GGGATGGGGGAGTGGAGAT 60.073 63.158 0.00 0.00 0.00 2.75
1483 1569 2.354729 CCGGGATGGCAAGGTTGA 59.645 61.111 0.00 0.00 0.00 3.18
1942 2046 3.197614 CGAGGAGCCGCAGTAGAA 58.802 61.111 0.00 0.00 0.00 2.10
2265 2369 4.680537 ACCTCCTCCAGCGACCGT 62.681 66.667 0.00 0.00 0.00 4.83
2412 2527 1.585297 AAACAATTGCAGCAACAGGC 58.415 45.000 10.85 0.00 45.30 4.85
2413 2528 3.123959 GCATAAACAATTGCAGCAACAGG 59.876 43.478 10.85 5.47 38.72 4.00
2476 2598 4.900182 CACACGATAAATTCATGCACGATC 59.100 41.667 0.00 0.00 0.00 3.69
2477 2599 4.332543 ACACACGATAAATTCATGCACGAT 59.667 37.500 0.00 0.00 0.00 3.73
2478 2600 3.682377 ACACACGATAAATTCATGCACGA 59.318 39.130 0.00 0.00 0.00 4.35
2480 2602 4.722194 ACACACACGATAAATTCATGCAC 58.278 39.130 0.00 0.00 0.00 4.57
2481 2603 5.447144 GCTACACACACGATAAATTCATGCA 60.447 40.000 0.00 0.00 0.00 3.96
2482 2604 4.963953 GCTACACACACGATAAATTCATGC 59.036 41.667 0.00 0.00 0.00 4.06
2483 2605 6.105657 TGCTACACACACGATAAATTCATG 57.894 37.500 0.00 0.00 0.00 3.07
2484 2606 5.874810 ACTGCTACACACACGATAAATTCAT 59.125 36.000 0.00 0.00 0.00 2.57
2485 2607 5.120053 CACTGCTACACACACGATAAATTCA 59.880 40.000 0.00 0.00 0.00 2.57
2486 2608 5.550981 CACTGCTACACACACGATAAATTC 58.449 41.667 0.00 0.00 0.00 2.17
2487 2609 4.142902 GCACTGCTACACACACGATAAATT 60.143 41.667 0.00 0.00 0.00 1.82
2488 2610 3.370978 GCACTGCTACACACACGATAAAT 59.629 43.478 0.00 0.00 0.00 1.40
2489 2611 2.734606 GCACTGCTACACACACGATAAA 59.265 45.455 0.00 0.00 0.00 1.40
2490 2612 2.029380 AGCACTGCTACACACACGATAA 60.029 45.455 0.21 0.00 36.99 1.75
2491 2613 1.544246 AGCACTGCTACACACACGATA 59.456 47.619 0.21 0.00 36.99 2.92
2492 2614 0.318441 AGCACTGCTACACACACGAT 59.682 50.000 0.21 0.00 36.99 3.73
2493 2615 0.318699 GAGCACTGCTACACACACGA 60.319 55.000 2.71 0.00 39.88 4.35
2494 2616 0.319040 AGAGCACTGCTACACACACG 60.319 55.000 2.71 0.00 39.88 4.49
2495 2617 2.029828 AGTAGAGCACTGCTACACACAC 60.030 50.000 2.71 0.00 39.88 3.82
2496 2618 2.239400 AGTAGAGCACTGCTACACACA 58.761 47.619 2.71 0.00 39.88 3.72
2506 2628 0.176680 CCCGATTGCAGTAGAGCACT 59.823 55.000 0.00 0.00 45.61 4.40
2507 2629 0.811616 CCCCGATTGCAGTAGAGCAC 60.812 60.000 0.00 0.00 45.61 4.40
2508 2630 1.522092 CCCCGATTGCAGTAGAGCA 59.478 57.895 0.00 0.00 43.99 4.26
2509 2631 1.889573 GCCCCGATTGCAGTAGAGC 60.890 63.158 0.00 0.00 0.00 4.09
2510 2632 0.107703 TTGCCCCGATTGCAGTAGAG 60.108 55.000 0.00 0.00 40.35 2.43
2511 2633 0.107703 CTTGCCCCGATTGCAGTAGA 60.108 55.000 0.00 0.00 40.35 2.59
2512 2634 0.107703 TCTTGCCCCGATTGCAGTAG 60.108 55.000 0.00 0.00 40.35 2.57
2594 2716 2.430465 CAAATGGACAGTGACTGGAGG 58.570 52.381 17.92 0.00 35.51 4.30
2695 2818 6.451064 AGTAAGGAAAGGAACAAAACAGTG 57.549 37.500 0.00 0.00 0.00 3.66
2718 2841 5.876357 AGGTCAAACTGCCTTCAACTTATA 58.124 37.500 0.00 0.00 0.00 0.98
2719 2842 4.729868 AGGTCAAACTGCCTTCAACTTAT 58.270 39.130 0.00 0.00 0.00 1.73
2764 2887 4.342862 TGATGTAGGGCTGAGCTAAATC 57.657 45.455 3.72 0.59 0.00 2.17
2840 2963 8.434661 CAATTATGCACAATTTTAGGTTCACAC 58.565 33.333 0.00 0.00 0.00 3.82
2841 2964 8.147058 ACAATTATGCACAATTTTAGGTTCACA 58.853 29.630 0.00 0.00 0.00 3.58
2862 2985 4.057432 CCCGAAACAAAAGATGCACAATT 58.943 39.130 0.00 0.00 0.00 2.32
2863 2986 3.554752 CCCCGAAACAAAAGATGCACAAT 60.555 43.478 0.00 0.00 0.00 2.71
2864 2987 2.223923 CCCCGAAACAAAAGATGCACAA 60.224 45.455 0.00 0.00 0.00 3.33
2865 2988 1.339610 CCCCGAAACAAAAGATGCACA 59.660 47.619 0.00 0.00 0.00 4.57
2866 2989 1.336795 CCCCCGAAACAAAAGATGCAC 60.337 52.381 0.00 0.00 0.00 4.57
2867 2990 0.965439 CCCCCGAAACAAAAGATGCA 59.035 50.000 0.00 0.00 0.00 3.96
2868 2991 0.966179 ACCCCCGAAACAAAAGATGC 59.034 50.000 0.00 0.00 0.00 3.91
2869 2992 3.681593 TCTACCCCCGAAACAAAAGATG 58.318 45.455 0.00 0.00 0.00 2.90
2870 2993 3.329814 ACTCTACCCCCGAAACAAAAGAT 59.670 43.478 0.00 0.00 0.00 2.40
2871 2994 2.707257 ACTCTACCCCCGAAACAAAAGA 59.293 45.455 0.00 0.00 0.00 2.52
2882 3005 4.713321 TGTTTATGTAGTGACTCTACCCCC 59.287 45.833 11.22 0.00 45.99 5.40
2999 3122 4.188462 TGCTGGTTTCACCGATGTAATAG 58.812 43.478 0.00 0.00 42.58 1.73
3060 3188 3.468071 TTTAGGAGTCAGGACTAGCCA 57.532 47.619 1.20 0.00 42.66 4.75
3078 3206 4.292306 ACATCCAAAGTAGAGTCCCCATTT 59.708 41.667 0.00 0.00 0.00 2.32
3083 3211 4.407296 AGATCACATCCAAAGTAGAGTCCC 59.593 45.833 0.00 0.00 0.00 4.46
3091 3219 4.978099 ACAGTCAAGATCACATCCAAAGT 58.022 39.130 0.00 0.00 0.00 2.66
3125 3253 6.587273 CCAATTTCACCCAAGGTTTTCTAAA 58.413 36.000 0.00 0.00 31.02 1.85
3140 3268 4.437390 CGGAACATCTACAGCCAATTTCAC 60.437 45.833 0.00 0.00 0.00 3.18
3149 3277 0.461961 AGGCTCGGAACATCTACAGC 59.538 55.000 0.00 0.00 0.00 4.40
3156 3284 5.250200 TGTTTTGTTATAGGCTCGGAACAT 58.750 37.500 8.93 0.00 32.19 2.71
3162 3290 4.914312 TCGTTGTTTTGTTATAGGCTCG 57.086 40.909 0.00 0.00 0.00 5.03
3195 3323 4.399219 CCTTCTCATGGAGAATCATGCAT 58.601 43.478 8.95 0.00 45.84 3.96
3201 3329 7.230108 TGAATATTTGCCTTCTCATGGAGAATC 59.770 37.037 8.95 5.57 45.84 2.52
3221 3349 6.992123 TGCAGGACGAACTAATTGATGAATAT 59.008 34.615 0.00 0.00 0.00 1.28
3410 3619 3.244561 ACTTTCAGATTGGGTCACGACAT 60.245 43.478 0.00 0.00 0.00 3.06
3467 3678 7.492020 GCATAGAATAGAGTATCAGCAATCTGG 59.508 40.741 0.00 0.00 40.69 3.86
3508 3719 7.307514 GGTTAATTAACGTCTGATGTCAACACA 60.308 37.037 19.48 0.00 37.07 3.72
3530 3741 3.974719 TGGGCAAAGCATGATTAGGTTA 58.025 40.909 0.00 0.00 0.00 2.85
3535 3746 3.634504 ACTGATGGGCAAAGCATGATTA 58.365 40.909 0.00 0.00 0.00 1.75
3548 3759 5.182001 CCTAGTGAAGAAACAAACTGATGGG 59.818 44.000 0.00 0.00 0.00 4.00
3626 3837 4.470602 GGTCTTTCCTCCTTCTCCAAAAA 58.529 43.478 0.00 0.00 0.00 1.94
3627 3838 3.181433 GGGTCTTTCCTCCTTCTCCAAAA 60.181 47.826 0.00 0.00 36.25 2.44
3628 3839 2.375509 GGGTCTTTCCTCCTTCTCCAAA 59.624 50.000 0.00 0.00 36.25 3.28
3629 3840 1.985895 GGGTCTTTCCTCCTTCTCCAA 59.014 52.381 0.00 0.00 36.25 3.53
3630 3841 1.657804 GGGTCTTTCCTCCTTCTCCA 58.342 55.000 0.00 0.00 36.25 3.86
3631 3842 0.913205 GGGGTCTTTCCTCCTTCTCC 59.087 60.000 0.00 0.00 36.25 3.71
3632 3843 1.557371 CAGGGGTCTTTCCTCCTTCTC 59.443 57.143 0.00 0.00 37.41 2.87
3633 3844 1.662686 CAGGGGTCTTTCCTCCTTCT 58.337 55.000 0.00 0.00 37.41 2.85
3634 3845 0.621082 CCAGGGGTCTTTCCTCCTTC 59.379 60.000 0.00 0.00 37.41 3.46
3635 3846 1.501654 GCCAGGGGTCTTTCCTCCTT 61.502 60.000 0.00 0.00 37.41 3.36
3636 3847 1.925972 GCCAGGGGTCTTTCCTCCT 60.926 63.158 0.00 0.00 37.41 3.69
3637 3848 2.677848 GCCAGGGGTCTTTCCTCC 59.322 66.667 0.00 0.00 37.41 4.30
3638 3849 1.916206 GAGGCCAGGGGTCTTTCCTC 61.916 65.000 5.01 0.00 38.01 3.71
3639 3850 1.925972 GAGGCCAGGGGTCTTTCCT 60.926 63.158 5.01 0.00 38.01 3.36
3640 3851 2.677848 GAGGCCAGGGGTCTTTCC 59.322 66.667 5.01 0.00 38.01 3.13
3641 3852 2.125766 AACGAGGCCAGGGGTCTTTC 62.126 60.000 5.01 0.00 38.01 2.62
3642 3853 2.154074 AACGAGGCCAGGGGTCTTT 61.154 57.895 5.01 0.00 38.01 2.52
3643 3854 2.529389 AACGAGGCCAGGGGTCTT 60.529 61.111 5.01 0.00 38.01 3.01
3644 3855 3.322466 CAACGAGGCCAGGGGTCT 61.322 66.667 5.01 0.00 42.15 3.85
3648 3859 2.859273 CTACAGCAACGAGGCCAGGG 62.859 65.000 5.01 0.00 0.00 4.45
3649 3860 1.448540 CTACAGCAACGAGGCCAGG 60.449 63.158 5.01 0.00 0.00 4.45
3650 3861 0.530744 TACTACAGCAACGAGGCCAG 59.469 55.000 5.01 0.00 0.00 4.85
3651 3862 0.970640 TTACTACAGCAACGAGGCCA 59.029 50.000 5.01 0.00 0.00 5.36
3652 3863 2.311124 ATTACTACAGCAACGAGGCC 57.689 50.000 0.00 0.00 0.00 5.19
3653 3864 3.000727 ACAATTACTACAGCAACGAGGC 58.999 45.455 0.00 0.00 0.00 4.70
3654 3865 6.588756 TCTTAACAATTACTACAGCAACGAGG 59.411 38.462 0.00 0.00 0.00 4.63
3655 3866 7.576750 TCTTAACAATTACTACAGCAACGAG 57.423 36.000 0.00 0.00 0.00 4.18
3656 3867 7.095523 GGTTCTTAACAATTACTACAGCAACGA 60.096 37.037 0.00 0.00 0.00 3.85
3657 3868 7.013529 GGTTCTTAACAATTACTACAGCAACG 58.986 38.462 0.00 0.00 0.00 4.10
3735 3946 7.700234 GTGTCAGTTGTGTTTCATTCATTTACA 59.300 33.333 0.00 0.00 0.00 2.41
3880 4091 1.735973 TGCTAGACAGATCGCGCAT 59.264 52.632 8.75 0.00 32.34 4.73
3924 4143 2.040813 ACTGCCTGAAGACCAATCACAT 59.959 45.455 0.00 0.00 0.00 3.21
3925 4144 1.421268 ACTGCCTGAAGACCAATCACA 59.579 47.619 0.00 0.00 0.00 3.58
3926 4145 1.808945 CACTGCCTGAAGACCAATCAC 59.191 52.381 0.00 0.00 0.00 3.06
3927 4146 1.271543 CCACTGCCTGAAGACCAATCA 60.272 52.381 0.00 0.00 0.00 2.57
3928 4147 1.457346 CCACTGCCTGAAGACCAATC 58.543 55.000 0.00 0.00 0.00 2.67
3929 4148 0.038744 CCCACTGCCTGAAGACCAAT 59.961 55.000 0.00 0.00 0.00 3.16
3930 4149 1.455849 CCCACTGCCTGAAGACCAA 59.544 57.895 0.00 0.00 0.00 3.67
3931 4150 2.528818 CCCCACTGCCTGAAGACCA 61.529 63.158 0.00 0.00 0.00 4.02
4023 4242 0.963856 ACACCAGTGGAGCATGCATG 60.964 55.000 22.70 22.70 39.99 4.06
4052 4271 1.467342 GTCCTCCCGTACACATTTTGC 59.533 52.381 0.00 0.00 0.00 3.68
4119 4338 2.484417 GCTCCTCCATGACATTGATCGT 60.484 50.000 0.00 0.00 0.00 3.73
4189 4408 1.986575 GACGAACGGTACCTCCTCGG 61.987 65.000 22.99 6.43 37.94 4.63
4262 4481 1.732259 GAATAGACCACGCCAACTGTG 59.268 52.381 0.00 0.00 37.09 3.66
4307 4527 8.623903 CAAAGAACAGCATTATGTATGTACCAT 58.376 33.333 5.82 0.00 36.57 3.55
4333 4553 0.623617 ATGGAGACCAAGGTACCCCC 60.624 60.000 8.74 0.00 36.95 5.40
4372 4592 6.131544 ACCAAAACTTTACACTAGTTGCAG 57.868 37.500 0.00 0.00 36.06 4.41
4379 4599 6.116806 TGCTGAGAACCAAAACTTTACACTA 58.883 36.000 0.00 0.00 0.00 2.74
4441 7427 7.968405 TGAGCTTAAAGAACAACAAAGAAGAAC 59.032 33.333 0.00 0.00 0.00 3.01
4497 7486 7.192852 AGAATCTGATAATGTCCAACAGTCT 57.807 36.000 0.00 0.00 0.00 3.24
4498 7487 7.768120 AGAAGAATCTGATAATGTCCAACAGTC 59.232 37.037 0.00 0.00 33.59 3.51
4535 7525 0.107017 AGGCACTCAACACTGCTGTT 60.107 50.000 0.00 0.00 41.61 3.16
4615 7605 4.522114 TCTTGACAACTCCAAATGTGTCA 58.478 39.130 1.37 1.37 34.95 3.58
4637 7627 7.052873 CACTCAGGAATCATACCAGAAGAATT 58.947 38.462 0.00 0.00 0.00 2.17
4717 7709 6.781507 ACTAGGGTACAGTTAGAAACACTCTT 59.218 38.462 0.00 0.00 35.41 2.85
4776 7768 5.619220 ACCAGATCTTGATTCCTATGCTTC 58.381 41.667 0.00 0.00 0.00 3.86
4809 7801 2.028658 AGCTCACATGACACAGTACAGG 60.029 50.000 0.00 0.00 0.00 4.00
4869 7882 0.107017 AGGAAATCACGCTCATGGGG 60.107 55.000 0.00 0.00 0.00 4.96
4881 7894 0.250513 AGAGCGTCCCACAGGAAATC 59.749 55.000 0.00 0.00 46.38 2.17
4930 7943 1.032114 AATGGCCTGTAAGCGCCTTC 61.032 55.000 2.29 0.00 46.44 3.46
4937 7950 3.505680 TGCACTGTAAAATGGCCTGTAAG 59.494 43.478 3.32 0.00 0.00 2.34
4972 8056 5.543714 ACATAAACATACGAGGTTGTGTGA 58.456 37.500 6.64 0.00 35.26 3.58
5045 8135 5.539955 CAGGAAGAGAAAATGAAAAAGGGGA 59.460 40.000 0.00 0.00 0.00 4.81
5061 8151 3.601443 ACTTCATCGAACCAGGAAGAG 57.399 47.619 16.03 0.00 39.20 2.85
5071 8163 3.972950 TTGCGGAAAAACTTCATCGAA 57.027 38.095 0.00 0.00 0.00 3.71
5162 8254 6.701400 AGTTCATTGAATTTGGGAAAAGTTCG 59.299 34.615 1.78 0.00 0.00 3.95
5180 8272 7.492344 GGTCATTGACTTGAAACAAAGTTCATT 59.508 33.333 16.02 0.00 40.48 2.57
5363 8455 9.992910 TTCATCAAATTCAAGATAAGTTCATCG 57.007 29.630 0.00 0.00 0.00 3.84
5403 8515 8.365210 CACGGATTTTTGAAAATAAGTTCATCG 58.635 33.333 1.93 0.00 38.64 3.84
5407 8519 9.026074 TGTTCACGGATTTTTGAAAATAAGTTC 57.974 29.630 1.93 0.00 38.64 3.01
5413 8525 7.264947 AGAAGTGTTCACGGATTTTTGAAAAT 58.735 30.769 1.54 1.54 41.06 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.